Query psy11849
Match_columns 94
No_of_seqs 126 out of 589
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:30:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 99.8 9.9E-19 2.1E-23 136.3 6.3 69 1-92 180-251 (274)
2 PF01151 ELO: GNS1/SUR4 family 99.6 1.8E-15 4E-20 114.4 5.3 72 1-92 159-235 (250)
3 PTZ00251 fatty acid elongase; 99.6 3.6E-15 7.9E-20 115.6 7.0 74 1-92 179-255 (272)
4 KOG3072|consensus 98.5 9.9E-08 2.1E-12 75.3 3.1 70 1-92 186-258 (282)
5 PF11952 DUF3469: Protein of u 14.3 1E+02 0.0022 20.3 1.2 14 65-78 46-59 (87)
6 PF04061 ORMDL: ORMDL family ; 12.3 5.4E+02 0.012 18.5 4.5 35 59-93 22-56 (136)
7 COG2917 Intracellular septatio 9.5 3E+02 0.0065 20.8 2.5 25 18-42 40-65 (180)
8 PF15333 TAF1D: TATA box-bindi 9.3 1.5E+02 0.0034 23.0 0.9 16 15-30 113-128 (217)
9 KOG3319|consensus 8.1 8.6E+02 0.019 18.0 4.3 30 63-92 37-66 (153)
10 KOG2925|consensus 7.6 66 0.0014 24.0 -1.7 17 6-22 47-63 (167)
No 1
>KOG3071|consensus
Probab=99.76 E-value=9.9e-19 Score=136.31 Aligned_cols=69 Identities=42% Similarity=0.710 Sum_probs=63.3
Q ss_pred CchhhHHHhhCCCccchhhhhhhhhhhhhHHHHHHHHHHhhhhhhcCCCchHHHHHHHHHHHhhh-hc-cCCCCcHH-HH
Q psy11849 1 MYFYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIFDCGYPKLLQFTLVFFHSAQV-LI-FDCGYPKL-VA 77 (94)
Q Consensus 1 MY~YY~~sa~g~~~~~~lw~Kk~iT~lQivQF~i~~~h~~~~~~~~c~~~~~~qf~~i~~h~~~~-l~-~~C~~p~~-~~ 77 (94)
||+||++||+||++|+++||||++|.+|++||+++.+|. .+. ++ +||++|++ ++
T Consensus 180 MY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~-----------------------~~~~~~~~~c~~~~~~~~ 236 (274)
T KOG3071|consen 180 MYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHT-----------------------LYVHLFKPGCCFGIGAWA 236 (274)
T ss_pred HHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHH-----------------------hheeeecCCCCCchHHHH
Confidence 899999999999999999999999999999999999998 344 44 59999999 88
Q ss_pred HHHHHHHHHHHHhcc
Q psy11849 78 ALLLLHSTIFFCLFS 92 (94)
Q Consensus 78 ~~~~~~~~~~l~LF~ 92 (94)
..+..++++|+.||+
T Consensus 237 ~~~~~~~~~~l~LF~ 251 (274)
T KOG3071|consen 237 FNGSVINVSFLLLFS 251 (274)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999999999996
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.58 E-value=1.8e-15 Score=114.40 Aligned_cols=72 Identities=39% Similarity=0.729 Sum_probs=59.6
Q ss_pred CchhhHHHhhCCCccchhhhhhhhhhhhhHHHHHHHHHHhhhhhhcCCCchHHHHHHHHHHHhhhhc--cCC---CCcHH
Q psy11849 1 MYFYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIFDCGYPKLLQFTLVFFHSAQVLI--FDC---GYPKL 75 (94)
Q Consensus 1 MY~YY~~sa~g~~~~~~lw~Kk~iT~lQivQF~i~~~h~~~~~~~~c~~~~~~qf~~i~~h~~~~l~--~~C---~~p~~ 75 (94)
||+||+++|+|.| +...||||+||.+||+||++++++..++.+ .... .|| ++|+.
T Consensus 159 MY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~-------------------~~~~~~~~C~~~~~~~~ 218 (250)
T PF01151_consen 159 MYSYYFLSALGIR-KVPRWWKKYITSLQIVQFVIGIVHTVYALY-------------------YYFFPGGDCDTSGYPKF 218 (250)
T ss_pred HHHHHHHHhcccc-cchhHHHHHHhHHhhhhhHHHHHHHHHHhh-------------------eeccCCCCCCcchhHHH
Confidence 8999999999954 122699999999999999999999865531 1111 489 88999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy11849 76 VAALLLLHSTIFFCLFS 92 (94)
Q Consensus 76 ~~~~~~~~~~~~l~LF~ 92 (94)
...+...+.+++++||+
T Consensus 219 ~~~~~~~~~~s~l~LF~ 235 (250)
T PF01151_consen 219 NAILGLVYYVSYLYLFI 235 (250)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999996
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=99.58 E-value=3.6e-15 Score=115.57 Aligned_cols=74 Identities=28% Similarity=0.318 Sum_probs=59.7
Q ss_pred CchhhHHHhhCCCccchhhhhhhhhhhhhHHHHHHHHHHhhhhhh--cCCCchHHHHHHHHHHHhhhhccCCCCcH-HHH
Q psy11849 1 MYFYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIF--DCGYPKLLQFTLVFFHSAQVLIFDCGYPK-LVA 77 (94)
Q Consensus 1 MY~YY~~sa~g~~~~~~lw~Kk~iT~lQivQF~i~~~h~~~~~~~--~c~~~~~~qf~~i~~h~~~~l~~~C~~p~-~~~ 77 (94)
||+||++||+||+ +...||||+||.+||+||+++++|..+++.. ||.+ -.+|++|+ ...
T Consensus 179 MY~YY~lsa~g~~-~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~-----------------~~~C~~~~~~~~ 240 (272)
T PTZ00251 179 MYFYFALSEAGFK-KLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGD-----------------PKGCSGTTMATA 240 (272)
T ss_pred HHHHHHHHhcCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-----------------CCCCCCchHHHH
Confidence 8999999999997 2223699999999999999999998766431 2332 13799998 777
Q ss_pred HHHHHHHHHHHHhcc
Q psy11849 78 ALLLLHSTIFFCLFS 92 (94)
Q Consensus 78 ~~~~~~~~~~l~LF~ 92 (94)
.....+++++++||+
T Consensus 241 ~~~~~~~~s~l~LF~ 255 (272)
T PTZ00251 241 RGQLMIYIFNFYLFS 255 (272)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788889999999996
No 4
>KOG3072|consensus
Probab=98.47 E-value=9.9e-08 Score=75.25 Aligned_cols=70 Identities=27% Similarity=0.391 Sum_probs=54.5
Q ss_pred CchhhHHHhhCCCccchhhhhhhhhhhhhHHHHHHHHHHhhhhhhcCCCchHHHHHHHHHHHhhhh-cc--CCCCcHHHH
Q psy11849 1 MYFYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIFDCGYPKLLQFTLVFFHSAQVL-IF--DCGYPKLVA 77 (94)
Q Consensus 1 MY~YY~~sa~g~~~~~~lw~Kk~iT~lQivQF~i~~~h~~~~~~~~c~~~~~~qf~~i~~h~~~~l-~~--~C~~p~~~~ 77 (94)
||+||+++|+|.|.+| |..+-+|.+|++||++...-.. |-.... .. +|.......
T Consensus 186 MY~YY~lrsl~ir~Pk--~vam~iTtlQi~Qm~i~~~i~~--------------------~v~~~~~~~~~~c~~s~~~~ 243 (282)
T KOG3072|consen 186 MYSYYALRSLGIRLPK--SVAMAITTLQIVQMVIGCYIGT--------------------HVYYVKHTHQLLCQQSYKNL 243 (282)
T ss_pred HHHHHHHHHcCCCCCh--HHHHHHHHHHHHHHHHHHheee--------------------EEEEEEecCCeeeeeeccch
Confidence 8999999999999885 7999999999999987754331 001111 11 399888888
Q ss_pred HHHHHHHHHHHHhcc
Q psy11849 78 ALLLLHSTIFFCLFS 92 (94)
Q Consensus 78 ~~~~~~~~~~l~LF~ 92 (94)
.+..+..+++++||+
T Consensus 244 ~l~~~my~syfvLf~ 258 (282)
T KOG3072|consen 244 SLCFLMYISYFVLFA 258 (282)
T ss_pred hhHHHHHHHHHHHHH
Confidence 899999999999986
No 5
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=14.34 E-value=1e+02 Score=20.25 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=10.3
Q ss_pred hhccCCCCcHHHHH
Q psy11849 65 VLIFDCGYPKLVAA 78 (94)
Q Consensus 65 ~l~~~C~~p~~~~~ 78 (94)
..|.+|+||..++-
T Consensus 46 ~~fLGC~Yp~~~m~ 59 (87)
T PF11952_consen 46 MEFLGCRYPPEVME 59 (87)
T ss_pred HHHHhcCCCHHHHH
Confidence 35579999987664
No 6
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=12.30 E-value=5.4e+02 Score=18.48 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHHhhhhccCCCCcHHHHHHHHHHHHHHHHhccC
Q psy11849 59 FFHSAQVLIFDCGYPKLVAALLLLHSTIFFCLFSW 93 (94)
Q Consensus 59 ~~h~~~~l~~~C~~p~~~~~~~~~~~~~~l~LF~~ 93 (94)
..|.....++.|..+..+...-+.+++..+++|=|
T Consensus 22 ~~~l~~~~ip~~s~~~~WTltn~~h~~~ty~~fHw 56 (136)
T PF04061_consen 22 LLKLILLSIPGFSQEWAWTLTNLIHNIITYIFFHW 56 (136)
T ss_pred HHHHHHHhccCCCccchhHHHHHHHHHHHHhheee
Confidence 34445556688999999999999999999888854
No 7
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=9.48 E-value=3e+02 Score=20.82 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=20.7
Q ss_pred hhhh-hhhhhhhhHHHHHHHHHHhhh
Q psy11849 18 LWWK-RHLTTLQLLQFTLVFFHSAQV 42 (94)
Q Consensus 18 lw~K-k~iT~lQivQF~i~~~h~~~~ 42 (94)
+|+| |.+.++|++-++++.+.+.-.
T Consensus 40 ~w~~~rkv~km~l~s~~~v~vFG~lT 65 (180)
T COG2917 40 LWIKYRKVEKMQLISGVVVVVFGGLT 65 (180)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchhH
Confidence 5888 999999999998888777443
No 8
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=9.27 E-value=1.5e+02 Score=22.98 Aligned_cols=16 Identities=44% Similarity=0.493 Sum_probs=13.7
Q ss_pred cchhhhhhhhhhhhhH
Q psy11849 15 QKYLWWKRHLTTLQLL 30 (94)
Q Consensus 15 ~~~lw~Kk~iT~lQiv 30 (94)
+|+++||+.+|-=|-|
T Consensus 113 rK~lpwk~iL~yEQav 128 (217)
T PF15333_consen 113 RKPLPWKKILTYEQAV 128 (217)
T ss_pred CCCccHHHHhhHHHHH
Confidence 5789999999998865
No 9
>KOG3319|consensus
Probab=8.06 E-value=8.6e+02 Score=17.95 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=22.8
Q ss_pred hhhhccCCCCcHHHHHHHHHHHHHHHHhcc
Q psy11849 63 AQVLIFDCGYPKLVAALLLLHSTIFFCLFS 92 (94)
Q Consensus 63 ~~~l~~~C~~p~~~~~~~~~~~~~~l~LF~ 92 (94)
....++.|.-|..+...-+.+++..++.|=
T Consensus 37 ~~ls~p~~s~~~aWTltnl~h~~~tyi~fH 66 (153)
T KOG3319|consen 37 VLLSIPFVSPPWAWTLTNLIHNIGTYIFFH 66 (153)
T ss_pred HHHhCccCCcchhHHHHHHHHHHhHheeEE
Confidence 444567888888888888888888777664
No 10
>KOG2925|consensus
Probab=7.59 E-value=66 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.2
Q ss_pred HHHhhCCCccchhhhhh
Q psy11849 6 MVSAMGPEYQKYLWWKR 22 (94)
Q Consensus 6 ~~sa~g~~~~~~lw~Kk 22 (94)
++.+|.+++|+.+|.+|
T Consensus 47 ~lvsmP~KfRksiWiRR 63 (167)
T KOG2925|consen 47 SLVSMPAKFRKSIWIRR 63 (167)
T ss_pred eeeeCCHhhhhceEEee
Confidence 35677888888889876
Done!