Query psy11849
Match_columns 94
No_of_seqs 126 out of 589
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:30:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tn2_A C-C motif chemokine 4; 5.6 1.8E+02 0.0061 17.1 0.6 12 18-29 57-68 (68)
2 2a2f_X Exocyst complex compone 4.6 3.3E+02 0.011 20.6 1.7 19 22-40 132-150 (325)
3 2i32_E Histone regulatory homo 3.8 1.1E+02 0.0037 18.3 -1.3 11 21-31 43-53 (57)
4 3g4p_A Beta-lactamase OXA-24; 3.0 5.5E+02 0.019 18.2 1.6 17 22-38 141-157 (244)
5 4avp_A ETS translocation varia 2.8 5.1E+02 0.018 16.7 1.2 24 9-39 1-24 (106)
6 1r9i_A MU-conotoxin PIIIA; cys 2.8 3.3E+02 0.011 13.6 0.2 6 70-75 5-10 (26)
7 2ko6_A Uncharacterized protein 2.7 4.5E+02 0.015 16.8 0.7 14 19-32 17-31 (89)
8 1f9q_A Platelet factor 4; bloo 2.4 6.8E+02 0.023 14.3 1.2 11 18-28 58-68 (70)
9 1ogd_A High affinity ribose tr 2.3 3.6E+02 0.012 17.9 -0.2 15 60-74 19-33 (131)
10 3hbr_A OXA-48; class D beta-la 2.3 5.2E+02 0.018 18.6 0.7 16 22-37 162-177 (265)
No 1
>3tn2_A C-C motif chemokine 4; cytokine; 1.60A {Homo sapiens} PDB: 1hum_A 1hun_A 2x6l_A 3kkh_A 1je4_A 2ffk_B 2fin_B
Probab=5.60 E-value=1.8e+02 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.6
Q ss_pred hhhhhhhhhhhh
Q psy11849 18 LWWKRHLTTLQL 29 (94)
Q Consensus 18 lw~Kk~iT~lQi 29 (94)
-|.|+++..++|
T Consensus 57 ~WVq~~i~~Ldl 68 (68)
T 3tn2_A 57 SWVQEYVYDLEL 68 (68)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 499999988764
No 2
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=4.61 E-value=3.3e+02 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.8
Q ss_pred hhhhhhhhHHHHHHHHHHh
Q psy11849 22 RHLTTLQLLQFTLVFFHSA 40 (94)
Q Consensus 22 k~iT~lQivQF~i~~~h~~ 40 (94)
++++..|++|.++.+-|.-
T Consensus 132 ~~~~l~qi~Qi~iNl~~le 150 (325)
T 2a2f_X 132 PSITLTQLIQIIIDTQYLE 150 (325)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHH
Confidence 4778899999999988863
No 3
>2i32_E Histone regulatory homolog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens}
Probab=3.78 E-value=1.1e+02 Score=18.30 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=6.2
Q ss_pred hhhhhhhhhHH
Q psy11849 21 KRHLTTLQLLQ 31 (94)
Q Consensus 21 Kk~iT~lQivQ 31 (94)
|+-||.+|+.|
T Consensus 43 Krritp~~I~p 53 (57)
T 2i32_E 43 RRRITPLCIAQ 53 (57)
T ss_dssp CEEEECEEC--
T ss_pred cccccceecCC
Confidence 56677777654
No 4
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=2.99 E-value=5.5e+02 Score=18.20 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.4
Q ss_pred hhhhhhhhHHHHHHHHH
Q psy11849 22 RHLTTLQLLQFTLVFFH 38 (94)
Q Consensus 22 k~iT~lQivQF~i~~~h 38 (94)
--||++|+++|.-.+..
T Consensus 141 l~isP~e~~~~~~~l~~ 157 (244)
T 3g4p_A 141 LKITPVQEVNFADDLAH 157 (244)
T ss_dssp CCBCHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHh
Confidence 45899999999766654
No 5
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=2.83 E-value=5.1e+02 Score=16.71 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=9.7
Q ss_pred hhCCCccchhhhhhhhhhhhhHHHHHHHHHH
Q psy11849 9 AMGPEYQKYLWWKRHLTTLQLLQFTLVFFHS 39 (94)
Q Consensus 9 a~g~~~~~~lw~Kk~iT~lQivQF~i~~~h~ 39 (94)
++||.+++. -.+|+-||..-++-.
T Consensus 1 ~~~~~~~~~-------g~i~LwqFL~~LL~d 24 (106)
T 4avp_A 1 SMGPTSQRR-------GSLQLWQFLVALLDD 24 (106)
T ss_dssp -----------------CCCHHHHHHHHHHC
T ss_pred CCCCCCCCC-------CcEeHHHHHHHHHcC
Confidence 466665432 236888887766554
No 6
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=2.80 E-value=3.3e+02 Score=13.64 Aligned_cols=6 Identities=67% Similarity=1.769 Sum_probs=3.7
Q ss_pred CCCcHH
Q psy11849 70 CGYPKL 75 (94)
Q Consensus 70 C~~p~~ 75 (94)
|++|+.
T Consensus 5 C~~Pk~ 10 (26)
T 1r9i_A 5 CGFPKS 10 (26)
T ss_dssp TTSTTG
T ss_pred cCCCCc
Confidence 677753
No 7
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=2.72 E-value=4.5e+02 Score=16.77 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=10.3
Q ss_pred hhh-hhhhhhhhHHH
Q psy11849 19 WWK-RHLTTLQLLQF 32 (94)
Q Consensus 19 w~K-k~iT~lQivQF 32 (94)
|-| +.+..+|++|=
T Consensus 17 W~k~~dLnL~q~Lqk 31 (89)
T 2ko6_A 17 WQKEPDFNLLQFLQK 31 (89)
T ss_dssp HHSSTTSCHHHHHHH
T ss_pred hhcCCCccHHHHHHH
Confidence 555 78888887775
No 8
>1f9q_A Platelet factor 4; blood clotting; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 1rhp_A 1f9s_A 1f9r_A 1pfm_A 1pfn_A 1plf_A
Probab=2.39 E-value=6.8e+02 Score=14.27 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=7.9
Q ss_pred hhhhhhhhhhh
Q psy11849 18 LWWKRHLTTLQ 28 (94)
Q Consensus 18 lw~Kk~iT~lQ 28 (94)
-|.|+++..+.
T Consensus 58 ~WVk~~i~~l~ 68 (70)
T 1f9q_A 58 PLYKKIIKKLL 68 (70)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 48888887653
No 9
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=2.32 E-value=3.6e+02 Score=17.92 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=9.8
Q ss_pred HHHhhhhccCCCCcH
Q psy11849 60 FHSAQVLIFDCGYPK 74 (94)
Q Consensus 60 ~h~~~~l~~~C~~p~ 74 (94)
.|.-..++-|||+|-
T Consensus 19 GH~D~ivIaDag~P~ 33 (131)
T 1ogd_A 19 GHTDKIVIADAGLPV 33 (131)
T ss_dssp CTTCEEEEECTTCCC
T ss_pred CCCCeEEEecCCCCC
Confidence 343555667999884
No 10
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=2.32 E-value=5.2e+02 Score=18.64 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=11.9
Q ss_pred hhhhhhhhHHHHHHHH
Q psy11849 22 RHLTTLQLLQFTLVFF 37 (94)
Q Consensus 22 k~iT~lQivQF~i~~~ 37 (94)
--+|++|+++++--+.
T Consensus 162 l~iTPlq~a~~~~~i~ 177 (265)
T 3hbr_A 162 IRISATEQISFLRKLY 177 (265)
T ss_dssp CCEEHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH
Confidence 4589999999865543
Done!