Query psy11849
Match_columns 94
No_of_seqs 126 out of 589
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 20:30:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11849.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11849hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bl2a1 f.1.4.1 (A:6-134) Bcl- 5.7 73 0.0053 19.7 0.4 18 9-29 54-71 (129)
2 d2ob5a1 c.133.1.1 (A:1-147) Hy 3.5 96 0.007 19.2 -0.3 16 60-75 21-36 (147)
3 d1q90b_ f.21.1.2 (B:) Cytochro 3.4 6E+02 0.043 16.3 4.3 34 53-86 89-123 (212)
4 d1h8ba_ a.39.1.7 (A:) alpha-Ac 3.3 1.3E+02 0.0097 17.0 0.3 15 19-34 28-42 (73)
5 d1mgsa_ d.9.1.1 (A:) Melanoma 3.0 2.2E+02 0.016 15.3 1.0 11 18-28 57-67 (73)
6 d1su3a1 a.20.1.2 (A:32-98) Fib 2.9 1.8E+02 0.013 15.6 0.6 7 68-74 59-65 (67)
7 d2axtf1 f.23.38.1 (F:11-45) Cy 2.8 1.1E+02 0.0078 15.2 -0.5 13 19-31 22-34 (35)
8 d1f9ra_ d.9.1.1 (A:) Platelet 2.8 2.6E+02 0.019 14.6 1.2 10 18-27 53-62 (65)
9 d2es4d1 a.137.15.1 (D:53-332) 2.5 2.1E+02 0.015 18.3 0.6 24 3-26 37-62 (280)
10 d1slma1 a.20.1.2 (A:16-80) Str 2.4 2.3E+02 0.017 15.1 0.6 6 68-73 58-63 (65)
No 1
>d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=5.67 E-value=73 Score=19.67 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=12.3
Q ss_pred hhCCCccchhhhhhhhhhhhh
Q psy11849 9 AMGPEYQKYLWWKRHLTTLQL 29 (94)
Q Consensus 9 a~g~~~~~~lw~Kk~iT~lQi 29 (94)
-.||..+ -||+.++++=-
T Consensus 54 dygpalk---nwkrdlsklft 71 (129)
T d3bl2a1 54 DYGPALK---NWKRDLSKLFT 71 (129)
T ss_dssp CSTTGGG---GHHHHHHHHHH
T ss_pred ccchHHH---HHHHHHHHHHH
Confidence 3567654 49999988643
No 2
>d2ob5a1 c.133.1.1 (A:1-147) Hypothetical protein Atu2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.55 E-value=96 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=11.2
Q ss_pred HHHhhhhccCCCCcHH
Q psy11849 60 FHSAQVLIFDCGYPKL 75 (94)
Q Consensus 60 ~h~~~~l~~~C~~p~~ 75 (94)
.|--..++.|||||-.
T Consensus 21 GHgD~ivIaDa~fP~~ 36 (147)
T d2ob5a1 21 GHGDTLVISDTNFPSD 36 (147)
T ss_dssp CTTCEEEEECSSSCHH
T ss_pred CCCCeEEEeCCCCCCc
Confidence 3436667789999854
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.36 E-value=6e+02 Score=16.34 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhccC-CCCcHHHHHHHHHHHHH
Q psy11849 53 LQFTLVFFHSAQVLIFD-CGYPKLVAALLLLHSTI 86 (94)
Q Consensus 53 ~qf~~i~~h~~~~l~~~-C~~p~~~~~~~~~~~~~ 86 (94)
+-+..+..|.....+.+ =+-||...|+...-...
T Consensus 89 ~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~ 123 (212)
T d1q90b_ 89 MMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAV 123 (212)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcccceehHhHHHHH
Confidence 34677788988877754 36688888776654433
No 4
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.33 E-value=1.3e+02 Score=16.96 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=7.5
Q ss_pred hhhhhhhhhhhHHHHH
Q psy11849 19 WWKRHLTTLQLLQFTL 34 (94)
Q Consensus 19 w~Kk~iT~lQivQF~i 34 (94)
-.++.||+=| +++++
T Consensus 28 dL~~~L~peq-aeyc~ 42 (73)
T d1h8ba_ 28 ELRRELPPDQ-AQYCI 42 (73)
T ss_dssp HHHHHSCHHH-HHHHH
T ss_pred HHHhhcCHHH-HHHHH
Confidence 3555555554 35544
No 5
>d1mgsa_ d.9.1.1 (A:) Melanoma growth stimulating activity (MGSA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=2.2e+02 Score=15.26 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=8.2
Q ss_pred hhhhhhhhhhh
Q psy11849 18 LWWKRHLTTLQ 28 (94)
Q Consensus 18 lw~Kk~iT~lQ 28 (94)
-|.|+++..++
T Consensus 57 ~WVkk~i~~l~ 67 (73)
T d1mgsa_ 57 PIVKKIIEKML 67 (73)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 38898887664
No 6
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.92 E-value=1.8e+02 Score=15.60 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=5.2
Q ss_pred cCCCCcH
Q psy11849 68 FDCGYPK 74 (94)
Q Consensus 68 ~~C~~p~ 74 (94)
++||.|-
T Consensus 59 PRCGvpD 65 (67)
T d1su3a1 59 PRCGVPD 65 (67)
T ss_dssp CBCSSCS
T ss_pred CCCCCCC
Confidence 6898873
No 7
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.84 E-value=1.1e+02 Score=15.20 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=8.4
Q ss_pred hhhhhhhhhhhHH
Q psy11849 19 WWKRHLTTLQLLQ 31 (94)
Q Consensus 19 w~Kk~iT~lQivQ 31 (94)
+.--.||.+|-+|
T Consensus 22 fFlGai~aMqfiq 34 (35)
T d2axtf1 22 FFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hhHhHHHHHHHhh
Confidence 4556677777655
No 8
>d1f9ra_ d.9.1.1 (A:) Platelet factor 4, PF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.79 E-value=2.6e+02 Score=14.63 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=6.8
Q ss_pred hhhhhhhhhh
Q psy11849 18 LWWKRHLTTL 27 (94)
Q Consensus 18 lw~Kk~iT~l 27 (94)
-|.|+++..+
T Consensus 53 ~WVk~~ikkl 62 (65)
T d1f9ra_ 53 PLYKKIIKKL 62 (65)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3888877653
No 9
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=2.52 E-value=2.1e+02 Score=18.32 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=14.6
Q ss_pred hhhHHHhhCCCccchh--hhhhhhhh
Q psy11849 3 FYYMVSAMGPEYQKYL--WWKRHLTT 26 (94)
Q Consensus 3 ~YY~~sa~g~~~~~~l--w~Kk~iT~ 26 (94)
+=||+|+.|.....-+ +.+.+|+.
T Consensus 37 fdYfls~~ge~~~~~~~a~v~~~i~~ 62 (280)
T d2es4d1 37 FDYCLTAQGELTPAALDALVRREIAA 62 (280)
T ss_dssp HHHHHTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHHh
Confidence 3488999998642222 45666643
No 10
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=2.41 E-value=2.3e+02 Score=15.07 Aligned_cols=6 Identities=50% Similarity=1.137 Sum_probs=0.0
Q ss_pred cCCCCc
Q psy11849 68 FDCGYP 73 (94)
Q Consensus 68 ~~C~~p 73 (94)
++||.|
T Consensus 58 PRCGvp 63 (65)
T d1slma1 58 PRCGVP 63 (65)
T ss_dssp CBCSSC
T ss_pred CCCCCC
Done!