RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11849
         (94 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 1   MYFYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIFDCGYPKLLQFTLVFF 60
           MYFYY ++A+G      +WWK+++T LQ++QF L   H    L           F     
Sbjct: 157 MYFYYFLAALGAR-GLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGCGGPFPKAVR 215


>gnl|CDD|222520 pfam14065, DUF4255, Protein of unknown function (DUF4255).  This
           family of proteins is functionally uncharacterized. This
           family of proteins is found in bacteria and archaea.
           Proteins in this family are typically between 190 and
           320 amino acids in length.
          Length = 179

 Score = 26.5 bits (59), Expect = 1.7
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 9/41 (21%)

Query: 3   FYYMVSAMGPEYQKYLWWKRHLTTLQLLQFTLVFFHSAQVL 43
            +Y+V+A         +   +   L+LL   L F     VL
Sbjct: 80  LHYLVTA---------YADDYEEELRLLGRVLQFLQDNPVL 111


>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
           prediction only].
          Length = 218

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 40  AQVLIFDCGYPKLLQFTLVFFHSAQVLIFD 69
           A VL+ D G   L +  L F    QV +F 
Sbjct: 173 AAVLVGDPGRAYLPKKRLEFLAIYQVPMFR 202


>gnl|CDD|216152 pfam00852, Glyco_transf_10, Glycosyltransferase family 10
           (fucosyltransferase).  This family of
           Fucosyltransferases are the enzymes transferring fucose
           from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This
           family is know as glycosyltransferase family 10.
          Length = 353

 Score = 26.1 bits (58), Expect = 3.0
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 13  EYQKYLWWKRHLTTLQLLQFT 33
           EY++Y  W++          +
Sbjct: 302 EYRRYFEWRKKYRVANQRLLS 322


>gnl|CDD|226330 COG3808, OVP1, Inorganic pyrophosphatase [Energy production and
           conversion].
          Length = 703

 Score = 26.2 bits (58), Expect = 3.1
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 34  LVFFHSAQVLIFDCGYPKLLQFTLVFFHSAQVLIFDCGYPKLVAALLL 81
           LV F +     FD  Y         +F     L  D   P +VA LLL
Sbjct: 485 LVLFAA---YSFDLKYFAANGKPYPYFADMGALSLDLSNPYVVAGLLL 529


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.338    0.147    0.513 

Gapped
Lambda     K      H
   0.267   0.0751    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,764,370
Number of extensions: 389334
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 29
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 53 (24.2 bits)