RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11849
         (94 letters)



>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
           aeruginosa}
          Length = 412

 Score = 28.3 bits (64), Expect = 0.30
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 68  FDCGYPKLVAALLLLHSTIFFCLF 91
           F  G P+LV+AL  + S   +  F
Sbjct: 256 FMVGNPELVSALARIKSYHDYGTF 279


>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
           {Staphylococcus aureus}
          Length = 404

 Score = 28.3 bits (64), Expect = 0.34
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 68  FDCGYPKLVAALLLLHSTIFFCLF 91
           F  G   ++ AL    +     +F
Sbjct: 264 FAVGNKDMIQALKKYQTHTNAGMF 287


>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
           enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
           {Thermus thermophilus}
          Length = 376

 Score = 27.9 bits (63), Expect = 0.38
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 68  FDCGYPKLVAALLLLHSTIFFCLF 91
           F  G  + +A L  +   I F  +
Sbjct: 241 FALGSEEALARLERVKGVIDFNQY 264


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.8 bits (53), Expect = 5.1
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 14  YQKYLWWKRHLTTLQLLQFTLVFFHSAQVLIFDCGYPKLLQFTLVFFHSA 63
           Y+ Y+         +L+   L F    +  +    Y  LL+  L+    A
Sbjct: 530 YKPYIC-DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.338    0.147    0.513 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,421,057
Number of extensions: 66414
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 6
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.9 bits)