BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1185
(131 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 282 AAGLTKVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQ 341
Query: 114 EEPDTETMSKVLML 127
EEPD ETMSKV +L
Sbjct: 342 EEPDAETMSKVKVL 355
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ C+EEKLKE+FE YG+++RVK+IKDYAF+HFEDR AI
Sbjct: 349 MSKVKVLYVRNLTQDCSEEKLKESFEVYGKIDRVKKIKDYAFIHFEDRDNAI 400
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL+ VIIY+SPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 278 APGLTDVIIYTSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 337
Query: 114 EEPDTETMSKVLML 127
EEPD+ETMSKV +L
Sbjct: 338 EEPDSETMSKVKVL 351
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRIKDYAFVHFEDRQEAI------- 52
MSKVKVLYVRNLTQ TEEKLKE FE++ GRVERVK+I+DYAFVHFEDR++A+
Sbjct: 345 MSKVKVLYVRNLTQEVTEEKLKEVFEEFGGRVERVKKIRDYAFVHFEDREDALRALEKNN 404
Query: 53 --TVTGLSQVIIYSSPDDNKKNR 73
G + + P +KK R
Sbjct: 405 NREAGGAPMEVSLAKPPSDKKKR 427
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEYDSHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 328 TAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 387
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 388 EEPDEQTMSKVKVL 401
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 395 MSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 454
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 455 KEVGASNIEVSLAKPPSDKKK 475
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEYDSHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 272 TAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 332 EEPDEQTMSKVKVL 345
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEVGASNIEVSLAKPPSDKKK 419
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 312 APGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 371
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 372 EEPDEQTMSKVRVL 385
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 49/52 (94%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYAF+HFEDR A+
Sbjct: 379 MSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYAFIHFEDRDNAV 430
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 259 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 318
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 319 EEPDEQTMSKVRVL 332
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 49/52 (94%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYAF+HFEDR A+
Sbjct: 326 MSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYAFIHFEDRDNAV 377
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 268 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 327
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 328 EEPDEQTMSKVRVL 341
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYAFVHFE+R A+
Sbjct: 335 MSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYAFVHFEERDNAV 386
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 268 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 327
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 328 EEPDEQTMSKVRVL 341
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYAFVHFE+R A+
Sbjct: 335 MSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYAFVHFEERDNAV 386
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEYDSHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 272 TAGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 332 EEPDEQTMSKVKVL 345
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEIGASNIEVSLAKPPSDKKK 419
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 268 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 327
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 328 EEPDEQTMSKVRVL 341
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYV+NLTQ C+EEKLKE FEQYG +ERVK+IKDYAFVHFE+R A+
Sbjct: 335 MSKVRVLYVKNLTQDCSEEKLKEVFEQYGNIERVKKIKDYAFVHFEERDNAV 386
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 265 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 324
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 325 EEPDEQTMSKVRVL 338
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 49/52 (94%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYAF+HFEDR A+
Sbjct: 332 MSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYAFIHFEDRDNAV 383
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQ
Sbjct: 268 APGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQ 327
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 328 EEPDEQTMSKVRVL 341
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYAFVHFE+R A+
Sbjct: 335 MSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYAFVHFEERDNAV 386
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 68/74 (91%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 269 TAGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQ 328
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 329 EEPDEQTMSKVRVL 342
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 49/52 (94%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKV+VLYVRNLTQ C+EEKLKE FEQYG++ERVK+IKDYAF+HFE+R+ A+
Sbjct: 336 MSKVRVLYVRNLTQDCSEEKLKECFEQYGKIERVKKIKDYAFIHFEERECAV 387
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 5/86 (5%)
Query: 47 DRQEAIT-----VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
DR E I GL +VIIYSSPDD KKNRGFCFLEYDSHK+ASLAK+RL TGR+KVW
Sbjct: 260 DRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVW 319
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
GCDIIVDWADPQEEPD +TMSKV +L
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVL 345
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEVGASNIEVSLAKPPSDKKK 419
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 282 TAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 341
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 342 EEPDEQTMSKVKVL 355
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ +EEKLKEAFE YG+VERVK+IKDYAF+HFEDR+ A+
Sbjct: 349 MSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERVKKIKDYAFIHFEDRENAV 400
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 272 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 332 EEPDEQTMSKVKVL 345
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ TEEKLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEIGASNIEVSLAKPPSDKKK 419
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 68/76 (89%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
+ GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWAD
Sbjct: 9 MLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWAD 68
Query: 112 PQEEPDTETMSKVLML 127
PQEEPD +TMSKV +L
Sbjct: 69 PQEEPDEQTMSKVKVL 84
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 45/52 (86%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ TEE LKE FE+YG VERVK+IKDYAFVHFEDR A+
Sbjct: 78 MSKVKVLYVRNLTQEITEEALKEEFERYGNVERVKKIKDYAFVHFEDRDCAV 129
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 274 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 333
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 334 EEPDEQTMSKVKVL 347
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 341 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 400
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 401 KEIGASNIEVSLAKPPSDKKK 421
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 5/86 (5%)
Query: 47 DRQEAIT-----VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
DR E I GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVW
Sbjct: 291 DRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVW 350
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
GCDIIVDWADPQEEPD +TMSKV +L
Sbjct: 351 GCDIIVDWADPQEEPDEQTMSKVKVL 376
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 370 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 429
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 430 KEIGASNIEVSLAKPPSDKKK 450
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 322 TAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 381
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 382 EEPDEQTMSKVKVL 395
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 45/52 (86%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ TEE LKE FE+YG VERVK+IKDYAFVHFEDR A+
Sbjct: 389 MSKVKVLYVRNLTQEITEEALKEEFERYGNVERVKKIKDYAFVHFEDRDCAV 440
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 307 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 366
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 367 EEPDEQTMSKVKVL 380
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 374 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 433
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 434 KEIGASNIEVSLAKPPSDKKK 454
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 311 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 370
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 371 EEPDEQTMSKVKVL 384
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 49 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 108
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 109 EEPDEQTMSKVKVL 122
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 116 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 175
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 176 KEIGASNIEVSLAKPPSDKKK 196
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 5/86 (5%)
Query: 47 DRQEAIT-----VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
DR E I GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVW
Sbjct: 299 DRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVW 358
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
GCDIIVDWADPQEEPD +TMSKV +L
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVL 384
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 285 TAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 344
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 345 EEPDEQTMSKVKVL 358
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ +EEKLKEAFE YG+VERVK+IKDYAF+HFEDR+ A+
Sbjct: 352 MSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERVKKIKDYAFIHFEDRENAV 403
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 269 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 328
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 329 EEPDEQTMSKVKVL 342
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 230 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 289
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 290 EEPDEQTMSKVKVL 303
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 297 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 356
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 357 KEIGASNIEVSLAKPPSDKKK 377
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 272 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 332 EEPDEQTMSKVKVL 345
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ TEEKLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEIGASNIEVSLAKPPSDKKK 419
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 272 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 332 EEPDEQTMSKVKVL 345
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 339 MSKVKVLYVRNLTQDVSEDKLKEHFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 398
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 399 KEIGASNIEVSLAKPPSDKKK 419
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 5/86 (5%)
Query: 47 DRQEAIT-----VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
DR E I GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVW
Sbjct: 257 DRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVW 316
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
GCDIIVDWADPQEEPD +TMSKV +L
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVL 342
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 311 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 370
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 371 EEPDEQTMSKVKVL 384
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 339 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 398
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 399 EEPDEQTMSKVKVL 412
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 406 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 465
Query: 60 VIIYSS 65
I +S
Sbjct: 466 KEIGAS 471
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 311 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 370
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 371 EEPDEQTMSKVKVL 384
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 303 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 362
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 363 EEPDEQTMSKVKVL 376
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 370 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 429
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 430 KEIGASNIEVSLAKPPSDKKK 450
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 235 TAGLMEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 294
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 295 EEPDEQTMSKVKVL 308
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54
MSKVKVLYVRNLTQ +EEKLKE+FEQ+G+VERVK+IKDYAF+HFEDR A+
Sbjct: 302 MSKVKVLYVRNLTQDTSEEKLKESFEQFGKVERVKKIKDYAFIHFEDRDHAVNA 355
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 269 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 328
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 329 EEPDEQTMSKVKVL 342
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 311 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 370
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 371 EEPDEQTMSKVKVL 384
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 303 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 362
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 363 EEPDEQTMSKVKVL 376
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 370 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 429
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 430 KEIGASNIEVSLAKPPSDKKK 450
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 269 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 328
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 329 EEPDEQTMSKVKVL 342
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 274 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 333
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 334 EEPDEQTMSKVKVL 347
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 341 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 400
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 401 KEIGASNIEVSLAKPPSDKKK 421
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 311 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 370
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 371 EEPDEQTMSKVKVL 384
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 378 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 437
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 438 KEIGASNIEVSLAKPPSDKKK 458
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 68/74 (91%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVW CDIIVDWADPQ
Sbjct: 265 APGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQ 324
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 325 EEPDEETMAKVKVL 338
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNLT TEEKLKE FE +GRVERVK+IKDYAFVHFE+R A+
Sbjct: 332 MAKVKVLYVRNLTTDVTEEKLKELFEAHGRVERVKKIKDYAFVHFEERDHAV 383
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 269 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 328
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 329 EEPDEQTMSKVKVL 342
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 69/74 (93%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD +KNRGFCFLEYDSHKSASLAK+RL+TGR+K++GCDIIVDWADPQ
Sbjct: 280 TAGLAEVIIYSSPDDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQ 339
Query: 114 EEPDTETMSKVLML 127
EEPD +TMS+V +L
Sbjct: 340 EEPDNDTMSRVKVL 353
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
MS+VKVLYVRNLTQ TEEKLKEAFE +G ++RVK+IKDYAFVHFE+R +A+
Sbjct: 347 MSRVKVLYVRNLTQEFTEEKLKEAFEAHGPIQRVKKIKDYAFVHFEERDDAVQAMDALNG 406
Query: 53 -TVTGLS-QVIIYSSPDDNKK 71
T+ G + +V + P D KK
Sbjct: 407 HTLYGANLEVSLAKPPSDRKK 427
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQ
Sbjct: 303 TAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQ 362
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 363 EEPDEQTMSKVKVL 376
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 370 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 429
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 430 KEIGASNIEVSLAKPPSDKKK 450
>gi|322800627|gb|EFZ21594.1| hypothetical protein SINV_10312 [Solenopsis invicta]
Length = 93
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 67/70 (95%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVWGCDIIVDWADPQEE
Sbjct: 1 GLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEE 60
Query: 116 PDTETMSKVL 125
PD +TMSK+
Sbjct: 61 PDEQTMSKIF 70
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 68/74 (91%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL++VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL+TGR+KVW CDIIVDWADPQ
Sbjct: 272 APGLTEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQ 331
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 332 EEPDQETMAKVKVL 345
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 53/81 (65%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQ- 59
M+KVKVLYVRNLT TEE+LKE FEQ+GRVERVK+IKDYAFVHFE+R A+ Q
Sbjct: 339 MAKVKVLYVRNLTADVTEERLKELFEQHGRVERVKKIKDYAFVHFEERDHAVKAMNQLQG 398
Query: 60 ---------VIIYSSPDDNKK 71
V + P D KK
Sbjct: 399 KDLCGAPMEVSLAKPPSDKKK 419
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 67/77 (87%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVW CDIIVDWA
Sbjct: 270 AKHAPGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWA 329
Query: 111 DPQEEPDTETMSKVLML 127
DPQEEPD +TMSKV +L
Sbjct: 330 DPQEEPDEQTMSKVKVL 346
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
MSKVKVLYVRNLTQ +EEKLKE+FEQ+GRVERVK+IKDYAFVHFEDR A+
Sbjct: 340 MSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERVKKIKDYAFVHFEDRDNAVKAMKDLDG 399
Query: 54 --VTGLS-QVIIYSSPDDNKK 71
V G + +V + P D KK
Sbjct: 400 KEVGGSNIEVSLAKPPSDKKK 420
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 66/74 (89%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVW CDIIVDWADPQ
Sbjct: 273 TAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQ 332
Query: 114 EEPDTETMSKVLML 127
EEPD +TMSKV +L
Sbjct: 333 EEPDEQTMSKVKVL 346
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
MSKVKVLYVRNLTQ +EEKLKE+FEQ+GRVERVK+IKDYAFVHFEDR A+
Sbjct: 340 MSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERVKKIKDYAFVHFEDRDNAVKAMKDLDG 399
Query: 54 --VTGLS-QVIIYSSPDDNKK 71
V G + +V + P D KK
Sbjct: 400 KEVGGSNIEVSLAKPPSDKKK 420
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 66/74 (89%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
+GL++VIIYSSPDD +KNRGFCFLEYDSHK+AS+AK+RL+ KVWGCDIIVDWADPQ
Sbjct: 264 TSGLTEVIIYSSPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQ 323
Query: 114 EEPDTETMSKVLML 127
EEPD ETMSKV +L
Sbjct: 324 EEPDDETMSKVKVL 337
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLTQ TE +LKE FE +G VERVK+IKDYAF+HF DR A+
Sbjct: 331 MSKVKVLYVRNLTQEVTENRLKETFEVHGSVERVKKIKDYAFIHFNDRGCAL 382
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 57 LSQVIIYSSPDD-NKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
L+ VI+Y+ DD KKNRGF FLEYDSHKSAS+AK++L GR +VW CDIIVDWADPQEE
Sbjct: 281 LTDVIVYNVADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEE 340
Query: 116 PDTETMSKVLML 127
PD ETMSKV +L
Sbjct: 341 PDEETMSKVKVL 352
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54
MSKVKVLYVRNL Q TE++++E FE +G+VERVK+IKDY FVHFE+R+ A+
Sbjct: 346 MSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERVKKIKDYGFVHFEEREHALAA 399
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPD-DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
GL VIIY S + +N+KNRGF FLEYDSHKSAS AK++L+TGRLKVW CD+IVDWADP +
Sbjct: 264 GLVDVIIYRSAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVD 323
Query: 115 EPDTETMSKVLML 127
PD ETMSKV +L
Sbjct: 324 NPDDETMSKVKVL 336
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLT TE+ +KE F ++G++ER K++KDY F+HFEDR +AI
Sbjct: 330 MSKVKVLYVRNLTSEVTEDIMKEKFGEFGKIERAKKVKDYGFIHFEDRDDAI 381
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG-CDIIVDWADP 112
V GL+ VIIY P+D KKNRGF FL ++SHK+ASLA++RL +GR+KVWG ++ VDWADP
Sbjct: 279 VGGLTDVIIYHMPEDRKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADP 338
Query: 113 QEEPDTETMSKVLML 127
QEEPD ETM+KV +L
Sbjct: 339 QEEPDEETMAKVKVL 353
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV------ 54
M+KVKVLYVRNLT EEKLKEAF+ +G VERVK++KDY FVHFE+R A+
Sbjct: 347 MAKVKVLYVRNLTPDAEEEKLKEAFQAFGTVERVKKLKDYCFVHFEERDAAVKAMEELNG 406
Query: 55 ----TGLSQVIIYSSPDDNKKNR 73
+ + + P +NKK +
Sbjct: 407 KEVEGSVVDISLAKPPSENKKKK 429
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 53/57 (92%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
+NRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQEEPD TMSKV +L
Sbjct: 1 ENRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEGTMSKVKVL 57
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNLT +EEKLKE FE YGRVERVK+IKDYAFVH+EDR +
Sbjct: 51 MSKVKVLYVRNLTHDISEEKLKEHFENYGRVERVKKIKDYAFVHYEDRDNTV 102
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 57 LSQVIIYSSPD-DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
L+ VIIY S + +N+KNRGF FLEY+SHK+AS AK++L++GR KVWGCD+IVDWADP ++
Sbjct: 269 LTDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVIVDWADPIDD 328
Query: 116 PDTETMSKVLML 127
PD++TMSKV +L
Sbjct: 329 PDSDTMSKVKVL 340
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLT TE+ LKE F +YG+VERVK+IKDY F+HFE+R +A+ + G++
Sbjct: 334 MSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERVKKIKDYGFIHFEERDDAVKAMEGMNG 393
Query: 59 --------QVIIYSSPDDNKK 71
+V + P +NKK
Sbjct: 394 QKLGKLEMEVSLAKPPSENKK 414
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 51 AITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109
A+ +T GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+W
Sbjct: 2 AVGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 61
Query: 110 ADPQEEPDTETMSKVLML 127
ADP EEPD E M+KV +L
Sbjct: 62 ADPVEEPDPEVMAKVKVL 79
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 73 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 124
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WA
Sbjct: 219 AKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWA 278
Query: 111 DPQEEPDTETMSKVLML 127
DP EEPD+E M+KV +L
Sbjct: 279 DPIEEPDSEVMAKVKVL 295
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+GR+ERVK++KDYAF+HF++R A+
Sbjct: 289 MAKVKVLFVRNLANSVTEEILEKSFGQFGRLERVKKLKDYAFIHFDERDSAVKALAEMNG 348
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 349 KDLEGEHIDIVFAKPPDQKR 368
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 213 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 272
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 273 PDPEVMAKVKVL 284
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 278 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 329
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 272 GLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VR L TEE L++ F Q+G++ERVK++KDYAFVHFE+R A+
Sbjct: 337 MAKVKVLFVRKLATAVTEELLEKTFSQFGKLERVKKLKDYAFVHFEERDAAVKAMEEMNG 396
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+ + P D K+
Sbjct: 397 KELGGEEIEIVLAKPPDKKR 416
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 270 GLQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 329
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 330 PDPEVMAKVKVL 341
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAFVHFE+R A+
Sbjct: 335 MAKVKVLFVRNLATAVTEELLEKTFAQFGKLERVKKLKDYAFVHFEERDAAVRAMDEMNG 394
Query: 53 -TVTGLSQVIIYSSPDDNKK 71
V G I+ + P D K+
Sbjct: 395 KEVGGEEIEIVLAKPPDKKR 414
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 270 GLQEVILYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 329
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 330 PDPEVMAKVKVL 341
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAFVHFE+R A+
Sbjct: 335 MAKVKVLFVRNLATAVTEELLEKTFAQFGKLERVKKLKDYAFVHFEERDAAVRAMDEMNG 394
Query: 53 -TVTGLSQVIIYSSPDDNKK 71
V G I+ + P D K+
Sbjct: 395 KEVGGEEIEIVLAKPPDKKR 414
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Query: 49 QEAITVTGLSQ----VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
+E VTGL++ VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG
Sbjct: 264 EEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV 323
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+WADP EEPD E M+KV +L
Sbjct: 324 VTVEWADPVEEPDPEVMAKVKVL 346
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 340 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 391
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Query: 49 QEAITVTGLSQ----VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
+E VTGL++ VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG
Sbjct: 264 EEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV 323
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+WADP EEPD E M+KV +L
Sbjct: 324 VTVEWADPVEEPDPEVMAKVKVL 346
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 340 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 391
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 234 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 293
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 294 PDPEVMAKVKVL 305
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 350
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 234 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 293
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 294 PDPEVMAKVKVL 305
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 350
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Query: 49 QEAITVTGLSQ----VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
+E VTGL++ VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG
Sbjct: 125 EEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV 184
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+WADP EEPD E M+KV +L
Sbjct: 185 VTVEWADPVEEPDPEVMAKVKVL 207
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 201 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 252
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 3 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 62
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 63 PDPEVMAKVKVL 74
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 68 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 119
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 234 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 293
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 294 PDPEVMAKVKVL 305
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 350
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 234 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 293
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 294 PDPEVMAKVKVL 305
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 350
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 247 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 306
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 307 PDPEVMAKVKVL 318
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 312 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 363
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KELEGEEIEIVLAKPPDKKRKER 419
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 112 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 171
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 172 PDPEVMAKVKVL 183
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 177 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 228
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 234 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 293
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 294 PDPEVMAKVKVL 305
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 350
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 112 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 171
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 172 PDPEVMAKVKVL 183
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 177 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 228
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 112 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 171
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 172 PDPEVMAKVKVL 183
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 177 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 228
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP +E
Sbjct: 272 GLMEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEIMAKVKVL 343
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATPVTEELLEKTFSQFGKLERVKKLKDYAFVHFEDRDAAVKAMQEMNC 396
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+ + P D K+
Sbjct: 397 KELEGEEIEIVLAKPPDKKR 416
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 112 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 171
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 172 PDPEVMAKVKVL 183
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 177 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 228
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 48 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 107
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 108 PDPEVMAKVKVL 119
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 113 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 164
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Query: 49 QEAITVTGLSQ----VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
+E VTGL++ VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG
Sbjct: 163 EEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV 222
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+WADP EEPD E M+KV +L
Sbjct: 223 VTVEWADPVEEPDPEVMAKVKVL 245
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 239 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 290
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 273 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 332
Query: 116 PDTETMSKVLML 127
PD E MSKV +L
Sbjct: 333 PDPEVMSKVKVL 344
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
MSKVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 338 MSKVKVLFVRNLANTVTEEILEKAFGQFGKLERVKKLKDYAFIHFDERVGAVKAMDEMNG 397
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 398 KELEGENIEIVFAKPPDQKR 417
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 196 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 255
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 256 PDPEVMAKVKVL 267
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 261 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 312
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 133 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 192
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 193 PDPEVMAKVKVL 204
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 198 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 249
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 236 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 287
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 236 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 287
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 244 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 303
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 304 PDPEVMAKVKVL 315
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 309 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 360
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 236 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 287
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 217 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 276
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 277 PDPEVMAKVKVL 288
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 282 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 333
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 236 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 287
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
Query: 49 QEAITVTGLSQ----VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
+E VTGL++ VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG
Sbjct: 241 EEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV 300
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+WADP EEPD E M+KV +L
Sbjct: 301 VTVEWADPVEEPDPEVMAKVKVL 323
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 317 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 368
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 241 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 300
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 301 PDPEVMAKVKVL 312
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 306 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 357
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 255 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 314
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 315 PDPEVMAKVKVL 326
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 320 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 371
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 241 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 300
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 301 PDPEVMAKVKVL 312
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 306 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 357
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 250 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 309
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 310 PDPEVMAKVKVL 321
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 315 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 366
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GLS VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAF+HFE+R A+
Sbjct: 334 MAKVKVLFVRNLANGVTEELLEKSFSEFGKLERVKKLKDYAFIHFEERDGAVKALEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 394 KELEGEPIEIVFAKPPDQKR 413
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 274 GLQDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 333
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 334 PDPEVMAKVKVL 345
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
M+KVKVL+VR L TEE L++ F Q+G++ERVK++KDYAFVHFE+R A+ + G++
Sbjct: 339 MAKVKVLFVRKLATAVTEELLEKTFSQFGKLERVKKLKDYAFVHFEERDAAVQAMEGMNG 398
Query: 59 --------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 399 KELGGEEIEIVLAKPPDKKRKER 421
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 246 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 305
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 306 PDPEVMAKVKVL 317
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 311 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 362
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD +KNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 275 GLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 334
Query: 116 PDTETMSKVLML 127
PD + M+KV +L
Sbjct: 335 PDPDVMAKVKVL 346
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VR L TEE L++ F +G++ERVK++KDYAFVHFEDR A+
Sbjct: 340 MAKVKVLFVRKLATPVTEELLEKTFSAFGKLERVKKLKDYAFVHFEDRDAAVKAMSEMNG 399
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+ + P D K+
Sbjct: 400 KELGGEEIEIVLAKPPDKKR 419
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP E
Sbjct: 274 GLQEVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAE 333
Query: 116 PDTETMSKVLML 127
PD + M+KV +L
Sbjct: 334 PDPDVMAKVKVL 345
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VR L TEE L++ F +G++ERVK++KDYAFVHFEDR A+
Sbjct: 339 MAKVKVLFVRKLAIPVTEELLEKTFSAFGKLERVKKLKDYAFVHFEDRDAAVKAMAEMNG 398
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+ + P D K+
Sbjct: 399 KELGGEGIEIVLAKPPDKKR 418
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 416 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 475
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 476 PDPEVMAKVKVL 487
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 481 MAKVKVLFVRNLANTVTEEILEKAFGQFGKLERVKKLKDYAFIHFDERVGAVKAMEEMNG 540
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 541 KELEGENIEIVFAKPPDQKR 560
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 131 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 190
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 191 PDPEVMAKVKVL 202
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 196 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 255
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 256 KDLEGENIEIVFAKPPDQKR 275
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 284 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 343
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 344 PDPEVMAKVKVL 355
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 349 MAKVKVLFVRNLANTVTEEILEKAFGQFGKLERVKKLKDYAFIHFDERVGAVKAMEEMNG 408
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 409 KELEGENIEIVFAKPPDQKR 428
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 280 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 339
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 340 PDPEVMAKVKVL 351
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 345 MAKVKVLFVRNLANSVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEGMNG 404
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 405 KELEGENIEIVFAKPPDQKR 424
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP EE
Sbjct: 174 GLVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEE 233
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 234 PDPEIMAKVKVL 245
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI----TVTG 56
M+KVKVL+VRNL+ TEE L++AF +G++ERVK++KDYAFVHF++R A+ + G
Sbjct: 239 MAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNG 298
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 299 TELEGEEIEIVLAKPPDKKRKER 321
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLVDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEIMAKVKVL 242
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI----TVTG 56
M+KVKVL+VRNL+ TEE L++AF +G++ERVK++KDYAFVHF++R A+ + G
Sbjct: 236 MAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNG 295
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 296 TELEGEEIEIVLAKPPDKKRKER 318
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WA
Sbjct: 275 AKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA 334
Query: 111 DPQEEPDTETMSKVLML 127
DP E+PD E M+KV +L
Sbjct: 335 DPIEDPDPEVMAKVKVL 351
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 13/82 (15%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAFVHF++R A V L+Q+
Sbjct: 345 MAKVKVLFVRNLANSVTEEILEKSFSQFGKLERVKKLKDYAFVHFDERDAA--VKALAQM 402
Query: 61 -----------IIYSSPDDNKK 71
I+++ P D K+
Sbjct: 403 NGKVLEGEHIDIVFAKPPDQKR 424
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP EE
Sbjct: 171 GLLDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEE 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEIMAKVKVL 242
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI----TVTG 56
M+KVKVL+VRNL+ TEE L++AF +G++ERVK++KDYAFVHF++R A+ + G
Sbjct: 236 MAKVKVLFVRNLSSTVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNG 295
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 296 AELEGEEIEIVLAKPPDKKRKER 318
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WA
Sbjct: 265 AKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA 324
Query: 111 DPQEEPDTETMSKVLML 127
DP E+PD E M+KV +L
Sbjct: 325 DPIEDPDPEVMAKVKVL 341
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 335 MAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHG 394
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 395 KDLEGEPIEIVFAKPPDQKR 414
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WA
Sbjct: 263 AKVTEGLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWA 322
Query: 111 DPQEEPDTETMSKVLML 127
DP E+PD E M+KV +L
Sbjct: 323 DPIEDPDPEVMAKVKVL 339
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R+ A+ +T L+
Sbjct: 333 MAKVKVLFVRNLASTVTEEILEKTFSQHGKLERVKKLKDYAFIHFEERESAVKALTDLNG 392
Query: 59 --------QVIIYSSPDDNKKNR 73
+++ PD +K R
Sbjct: 393 KDLEGEHIEIVFAKPPDQKRKER 415
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 270 GLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 329
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 330 PDPEVMAKVKVL 341
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 335 MAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHG 394
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 395 KDLEGEPIEIVFAKPPDQKR 414
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLNDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 10/83 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTG---- 56
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R A+ G
Sbjct: 334 MAKVKVLFVRNLASAVTEELLEKTFSQFGKLERVKKLKDYAFIHFEERDSAVKALGDLNG 393
Query: 57 ------LSQVIIYSSPDDNKKNR 73
+++ PD +K R
Sbjct: 394 KDLEGEHIEIVFAKPPDQKRKER 416
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G +ERVK++KDYAFVHF DR A+
Sbjct: 334 MAKVKVLFVRNLANSVTEEILEKAFGQFGNLERVKKLKDYAFVHFNDRDGAVKALTEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 394 KELEGEHIEIVFAKPPDQKR 413
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLE++ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 276 GLNDVILYHQPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIED 335
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 336 PDPEVMAKVKVL 347
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F +G++ERVK++KDYAF+HFE+R+ A+
Sbjct: 341 MAKVKVLFVRNLANSVTEEILEKSFSAFGKLERVKKLKDYAFIHFEEREGAVKALDEMNG 400
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 401 KELEGEPIEIVFAKPPDQKR 420
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 55/70 (78%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 76 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 135
Query: 116 PDTETMSKVL 125
PD E M+K L
Sbjct: 136 PDPEVMAKFL 145
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG-CDIIVDWADP 112
GL VIIY P+D +KNRGF FLEY SHK ASLA++RL +GR+KVWG + VDWADP
Sbjct: 259 TNGLKDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADP 318
Query: 113 QEEPDTETMSKVLML 127
EEPD E MSKV +L
Sbjct: 319 IEEPDDEVMSKVKVL 333
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLYVRNL EE ++ FE YG VERVK+IKDYAFVHFE+R++AI
Sbjct: 327 MSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERVKKIKDYAFVHFENREDAI 378
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 236 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 295
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 296 KDLEGENIEIVFAKPPDQKR 315
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 14 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 73
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 74 PDPEVMAKVKVL 85
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 79 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 138
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 139 KDLEGENIEIVFAKPPDQKR 158
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 236 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 295
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 296 KDLEGENIEIVFAKPPDQKR 315
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 266 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 325
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 326 PDPEVMAKVKVL 337
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 331 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 390
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 391 KDLEGENIEIVFAKPPDQKR 410
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 236 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 295
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 296 KDLEGENIEIVFAKPPDQKR 315
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 171 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 230
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 231 PDPEVMAKVKVL 242
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 236 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 295
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 296 KDLEGENIEIVFAKPPDQKR 315
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 342 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 401
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 402 PDPEVMAKVKVL 413
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 407 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 466
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 467 KDLEGENIEIVFAKPPDQKR 486
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 313 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 372
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 373 PDPEVMAKVKVL 384
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 378 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 437
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 438 KDLEGENIEIVFAKPPDQKR 457
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 284 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 343
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 344 PDPEVMAKVKVL 355
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 349 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 408
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 409 KDLEGENIEIVFAKPPDQKR 428
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDD 68
+ G + I+++ P D
Sbjct: 394 KDLEGENIEIVFAKPPD 410
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVL 125
PD E M+KV+
Sbjct: 329 PDPEVMAKVM 338
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 10/81 (12%)
Query: 1 MSKV-KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------ 53
M+KV KVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVMKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMN 393
Query: 54 ---VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 GKDLEGENIEIVFAKPPDQKR 414
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 371 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 430
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 431 PDPEVMAKVKVL 442
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 436 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 495
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 496 KDLEGENIEIVFAKPPDQKR 515
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 266 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 325
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 326 PDPEVMAKVKVL 337
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 331 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 390
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 391 KDLEGENIEIVFAKPPDQKR 410
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 320 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 379
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 380 PDPEVMAKVKVL 391
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 385 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 444
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 445 KDLEGENIEIVFAKPPDQKR 464
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 305 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 364
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 365 PDPEVMAKVKVL 376
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 370 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 429
Query: 54 --VTGLSQVIIYSSPDD 68
+ G + I+++ P D
Sbjct: 430 KDLEGENIEIVFAKPPD 446
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 241 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 300
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 301 PDPEVMAKVKVL 312
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 306 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 365
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 366 KDLEGENIEIVFAKPPDQKR 385
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 309 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 368
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 369 PDPEVMAKVKVL 380
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 374 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 433
Query: 54 --VTGLSQVIIYSSPDD 68
+ G + I+++ P D
Sbjct: 434 KDLEGENIEIVFAKPPD 450
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 305 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 364
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 365 PDPEVMAKVKVL 376
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 370 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 429
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 430 KDLEGENIEIVFAKPPDQKR 449
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 284 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 343
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 344 PDPEVMAKVKVL 355
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 349 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 408
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 409 KDLEGENIEIVFAKPPDQKR 428
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 34
M+KVKVL+VRNL TEE L++AF Q+G++ERV
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 177 PDPEVMAKVKVL 188
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 182 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 241
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 242 KDLEGENIEIVFAKPPDQKR 261
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 198 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 257
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 258 PDPEVMAKVKVL 269
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 263 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 322
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I++++P D K+
Sbjct: 323 KDLEGENIEIVFANPPDKKR 342
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 204 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 263
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 264 PDPEVMAKVKVL 275
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 269 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 328
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 329 KDLEGENIEIVFAKPPDQKR 348
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 179 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 239 PDPEVMAKVKVL 250
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 303
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 304 KDLEGENIEIVFAKPPDQKR 323
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 272 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 337 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 396
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 397 KDLEGENIEIVFAKPPDQKR 416
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 179 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 239 PDPEVMAKVKVL 250
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 303
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 304 KDLEGENIEIVFAKPPDQKR 323
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 177 PDPEVMAKVKVL 188
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 182 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 241
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 242 KDLEGENIEIVFAKPPDQKR 261
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 117 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 177 PDPEVMAKVKVL 188
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 182 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 241
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 242 KDLEGENIEIVFAKPPDQKR 261
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
A GL+ VI+Y PDD KKNRGFCFL Y+ HK+A+ A++RL +G++KVWG + V+WA
Sbjct: 265 AKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA 324
Query: 111 DPQEEPDTETMSKVLML 127
DP E+PD E M+KV +L
Sbjct: 325 DPIEDPDPEVMAKVKVL 341
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 335 MAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHG 394
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 395 KDLEGEPIEIVFAKPPDQKR 414
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GLS VI+Y P D KNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF +YG +ERVK++KDYAF+HFE+R A+
Sbjct: 334 MAKVKVLFVRNLANSVTEEILEKAFSEYGNLERVKKLKDYAFIHFEERDGAVKALEELNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 394 KELEGEPIEIVFAKPPDQKR 413
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GLS VI+Y P D KNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 273 GLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMED 332
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 333 PDPEVMAKVKVL 344
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F +YG +ERVK++KDYAF+HFE+R A+
Sbjct: 338 MAKVKVLFVRNLANSVTEEILEKSFSEYGNLERVKKLKDYAFIHFEERDGAVKALEEMNG 397
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 398 KELEGEPIEIVFAKPPDQKR 417
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 55/69 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKV 124
PD E M+KV
Sbjct: 329 PDPEVMAKV 337
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII-VDWADP 112
GL VI+Y S D KNRGF FLEY+SH++ASLA++RLA+GR+KVWG ++ VDWADP
Sbjct: 257 TNGLDDVIVYLSADQKGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADP 316
Query: 113 QEEPDTETMSKV 124
QEEPD + M KV
Sbjct: 317 QEEPDDDAMKKV 328
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M KVKV+Y+RNL+ TEEKLKE + QYG V+RVK++KDYAFVHF +R A+
Sbjct: 325 MKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHAL 376
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGF FLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 76 GLVDVILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 135
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 136 PDPEVMAKVKVL 147
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 141 MAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 192
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y P D KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 269 GLNDVILYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 334 MAKVKVLFVRNLASSVTEELLEKAFSQFGKLERVKKLKDYAFIHFEERDGAVKALADLNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 394 KDLEGEHIEIVFAKPPDQKR 413
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCF EY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 272 GLTDVILYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIED 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 337 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 396
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 397 KDLEGENIEIVFAKPPDQKR 416
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNR FCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNR FCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y P D KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V+WADP E+
Sbjct: 321 GLNDVILYLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLED 380
Query: 116 PDTETMSKV 124
PD E M+KV
Sbjct: 381 PDPEVMAKV 389
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 9/78 (11%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT--------- 53
+VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 419 QVKVLFVRNLASSVTEELLEKAFSQFGKLERVKKLKDYAFIHFEERDGAVKALADLNGKD 478
Query: 54 VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 479 LEGEHIEIVFAKPPDQKR 496
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRG CFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 117 GLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 176
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 177 PDPEVMAKVKVL 188
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 182 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 241
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 242 KDLEGENIEIVFAKPPDQKR 261
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNR FCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 331 GLVDVILYHQPDDKKKNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 389
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 390 PDPEVMAKVKVL 401
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 395 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 446
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 14/124 (11%)
Query: 12 LTQYCTEEKLKEAFEQ------YGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
+T++C E+ LK G + + K K+ F++ E G++ IIYSS
Sbjct: 2 VTKFCPEKNLKVNVSVANTRLFIGNIPKSKS-KEEILAEFKEHTE-----GVTDCIIYSS 55
Query: 66 PD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSK 123
PD +++KNRGFCFL++ HKSAS AK+++ G+L+ W D++VDWA+ QEEPD ETM+K
Sbjct: 56 PDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAK 115
Query: 124 VLML 127
V +L
Sbjct: 116 VKVL 119
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+
Sbjct: 113 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAV 164
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HKSAS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 305 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQ 364
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 365 EEPDEETMAKVKVL 378
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+ + L+
Sbjct: 372 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNG 431
Query: 60 VIIYSSP 66
++ P
Sbjct: 432 TVLEGVP 438
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HKSAS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 305 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQ 364
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 365 EEPDEETMAKVKVL 378
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+ + L+
Sbjct: 372 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNG 431
Query: 60 VIIYSSP 66
++ P
Sbjct: 432 TVLEGVP 438
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HKSAS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 293 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQ 352
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 353 EEPDEETMAKVKVL 366
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+ + L+
Sbjct: 360 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNG 419
Query: 60 VIIYSSP 66
++ P
Sbjct: 420 TVLEGVP 426
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 7/92 (7%)
Query: 38 KDYAFVHFEDRQEAITVTGLSQVIIYSSPDD--NKKNRGFCFLEYDSHKSASLAKKRLAT 95
K+ F++ E G+ IIY+SPD N+KNRGFCFL++ HK+AS AK+++
Sbjct: 292 KEEILAEFKEHTE-----GVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKIHA 346
Query: 96 GRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
G+L+ W D++VDWA+ QEEPD ETMSKV +L
Sbjct: 347 GKLRPWNSDLVVDWAEQQEEPDEETMSKVKVL 378
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 15/90 (16%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
MSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF+HF++R+ A+
Sbjct: 372 MSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAFIHFKEREPALKAMEALNG 431
Query: 53 -TVTGLSQVIIYSSPDDNKKN------RGF 75
+ G++ I + P +KK RGF
Sbjct: 432 TVLEGIAIEISLAKPQGDKKKTVRGRGRGF 461
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HK+AS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 399 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQ 458
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 459 EEPDEETMAKVKVL 472
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF+HF +R+ AI
Sbjct: 466 MAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAFIHFMEREPAI 517
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HK+AS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 420 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQ 479
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 480 EEPDEETMAKVKVL 493
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF+HF +R+ AI
Sbjct: 487 MAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAFIHFMEREPAI 538
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HK+AS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 400 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQ 459
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 460 EEPDEETMAKVKVL 473
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF+HF +R+ AI
Sbjct: 467 MAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAFIHFMEREPAI 518
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ IIYSSPD +++KNRGFCFL++ HK+AS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 387 GVTDCIIYSSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQ 446
Query: 114 EEPDTETMSKVLML 127
EEPD ETM+KV +L
Sbjct: 447 EEPDEETMAKVKVL 460
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF+HF +R+ AI
Sbjct: 454 MAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAFIHFMEREPAI 505
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDD--NKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ IIY+SPD N+KNRGFCFL++ HK+AS AK+++ G+L+ W D++VDWA+ Q
Sbjct: 27 GVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQ 86
Query: 114 EEPDTETMSKVLML 127
EEPD ETMSKV +L
Sbjct: 87 EEPDEETMSKVKVL 100
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 15/90 (16%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
MSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF+HF++R+ A+
Sbjct: 94 MSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAFIHFKEREPALKAMEALNG 153
Query: 53 -TVTGLSQVIIYSSPDDNKK------NRGF 75
+ G++ I + P +KK RGF
Sbjct: 154 TVLEGIAIEISLAKPQGDKKKTVRGRGRGF 183
>gi|340728522|ref|XP_003402571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like,
partial [Bombus terrestris]
Length = 140
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----- 55
MSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYAFVHFE+R A+
Sbjct: 1 MSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYAFVHFEERDNAVKAMNELNG 60
Query: 56 ---GLS--QVIIYSSPDDNKK 71
G S +V + P D KK
Sbjct: 61 KEIGGSHIEVSLAKPPSDKKK 81
>gi|317008639|gb|ADU79247.1| GH13679p [Drosophila melanogaster]
Length = 202
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 1 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 60
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 61 KEIGASNIEVSLAKPPSDKKK 81
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 55/173 (31%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA-------- 51
++V L + TE++L FE+ GR+ ++ + D YAFV F D+++A
Sbjct: 86 VFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFNGSNRGYAFVTFCDKEQAKRACQQLN 145
Query: 52 --------------------ITVTGLSQ--------------------VIIYSSPDDNKK 71
+ V+G+ + VI+Y S D K
Sbjct: 146 GFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYPSAMDKSK 205
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
NRGF F+EY+SH+SA++A+++LA RL +WG +I VDWA+P+ + D ETM++V
Sbjct: 206 NRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMAQV 258
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKDYAFVHFEDRQEAITV 54
M++VK LYVRNL + TEE L+E E G VERVK+I+DYAFVHF R++AI V
Sbjct: 255 MAQVKKLYVRNLMMHTTEEHLREVVEAISGTGTVERVKKIRDYAFVHFSRREDAIRV 311
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 54 VTGLSQVIIYSSPDD--NKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
V ++ VI+YS+P+D NKKNRGFCFLE+ HKSAS AK+RL + R + W +++V+WA+
Sbjct: 321 VQNITDVIMYSNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAE 380
Query: 112 PQEEPDTETMSKVLML 127
Q++ D ETMSKV +L
Sbjct: 381 TQDDVDKETMSKVKIL 396
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
MSKVK+LY+R L +EE+L+ F QYG VERVKRIKDYAFVHF +R++A
Sbjct: 390 MSKVKILYLRPLKDSVSEEELRVRFSQYGTVERVKRIKDYAFVHFAEREQA 440
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 10/81 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
MSKVKVLYVRNLTQ +EEKLKE+FE +G+VERVK+IKDYAFVHFEDR A+
Sbjct: 261 MSKVKVLYVRNLTQDTSEEKLKESFEAFGKVERVKKIKDYAFVHFEDRDHAVNAMKDLDG 320
Query: 54 --VTGLS-QVIIYSSPDDNKK 71
+ G + +V + P D KK
Sbjct: 321 KDINGSAIEVSLAKPPSDKKK 341
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
NRG+ F+ + S +A A + +VWGCDIIVDWADPQEEPD +TMSKV +L
Sbjct: 219 NRGYAFVTFTSRDAACNAVR-------EVWGCDIIVDWADPQEEPDEQTMSKVKVL 267
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 7/80 (8%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G++ VI+Y S D KNRGF F+EYDSH++A++A+++L GR+++WG I VDWA+P+++
Sbjct: 218 GVTDVIVYPSASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQD 277
Query: 116 PDTETMSKV-------LMLD 128
D E M +V LMLD
Sbjct: 278 VDDEIMGQVKVLYVRNLMLD 297
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TE+ L+ F Q+ G VERVK+I+DYAFVHF R+ I
Sbjct: 283 MGQVKVLYVRNLMLDTTEDTLQNVFSQFKPGSVERVKKIRDYAFVHFSTREACI 336
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E R E VT G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG
Sbjct: 153 EIRTEMKKVTEGVVDVIVYPSATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQ 212
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
I VDWA+P++E D + MSKV +L
Sbjct: 213 IAVDWAEPEQEVDEDVMSKVKIL 235
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Query: 1 MSKVKVLYVRNL----TQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVK+LYVRNL T+ E +A + G VERVK+++DYAFVHF++R +A+
Sbjct: 229 MSKVKILYVRNLMLTTTEEFLETTFNQACGKEGAVERVKKLRDYAFVHFKERDDAL 284
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG-CDIIVDW 109
A V LS VI+Y S +D KNRGF FLE+ +HK ASLA++R TGR+KV+G VDW
Sbjct: 266 ASKVENLSDVIVYISSEDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDW 325
Query: 110 ADPQEEPDTETMSKV 124
ADP EEPD MSKV
Sbjct: 326 ADPVEEPDDNVMSKV 340
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKV+YVRNL+ E KL E F+QYG VE+VK++KDYAF+HF +R +A+
Sbjct: 337 MSKVKVVYVRNLSPAIEETKLNELFKQYGAVEKVKKLKDYAFIHFVNRDDAV 388
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG-CDIIVDWADPQE 114
GL VIIY + +D +NRGF FLE+DSHK+A+ AK++LA+GR+KVW ++ VDWADP
Sbjct: 278 GLLDVIIYKT-EDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPVI 336
Query: 115 EPDTETMSKV 124
EPD++TMSKV
Sbjct: 337 EPDSDTMSKV 346
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKV+Y+RNL+ TE K+KE F QYG VE+ K++KDY FVHF++R A+
Sbjct: 343 MSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEKAKKMKDYCFVHFKERDAAV 394
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 55/176 (31%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITVT---- 55
++V L + E++L E++G++ V+ + D YAFV F ++QEA T
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRGYAFVTFSNKQEAKTAMKQLN 118
Query: 56 --------------------------------------------GLSQVIIYSSPDDNKK 71
G+ VI+Y S D K
Sbjct: 119 NYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGVVDVIVYPSAADKSK 178
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E D +TM+ V +L
Sbjct: 179 NRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMATVKIL 234
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE ++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 228 MATVKILYVRNLMLQTTEETIEREFNSLKPGAVERVKKIRDYAFVHFCQREDAINAMNAL 287
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 288 NGKLVEGSP 296
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R +AI + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRDDAIEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Query: 48 RQEAITVT------GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
R+E I V G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++W
Sbjct: 148 RREEILVEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 207
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
G I VDWA+P+ E D +TMS V +L
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKIL 233
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Query: 48 RQEAITVT------GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101
R+E I V G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++W
Sbjct: 148 RREEILVEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 207
Query: 102 GCDIIVDWADPQEEPDTETMSKVLML 127
G I VDWA+P+ E D +TMS V +L
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKIL 233
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 7 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 66
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 67 VDEDTMSSVKIL 78
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 72 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 131
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 132 NGKVLDGSP 140
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 78 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 137
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 138 VDEDTMSSVKIL 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 143 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 202
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 203 NGKVLDGSP 211
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 170 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 229
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 230 VDEDTMSSVKIL 241
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 235 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 294
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 295 NGKVLDGSP 303
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 155 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 214
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 215 VDEDTMSSVKIL 226
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 220 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 279
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 280 NGKVLDGSP 288
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
MS VK+LYVRNL +EE ++ F I DYAFVHF R++A+ + L+
Sbjct: 227 MSSVKILYVRNLMLSTSEEIIEREFNNIK-----PEIWDYAFVHFSKREDAVEAMKALNG 281
Query: 60 VIIYSSP 66
++ SP
Sbjct: 282 KVLDGSP 288
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEIIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 136 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 195
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 196 VDEDTMSSVKIL 207
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 201 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 260
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 261 NGKVLDGSP 269
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 55/72 (76%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ +VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVEVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE ++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEETIEREFNNIKPGAVERVKKIRDYAFVHFNNREDAVGAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 165 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 224
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 225 VDEDTMSSVKIL 236
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 230 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 289
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 290 NGKMLDGSP 298
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAV 280
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R+ A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTTEETIEKEFNSIKPGAVERVKKIRDYAFVHFNKREHAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 136 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 195
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 196 VDEDTMSSVKIL 207
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 201 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 260
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 261 NGKVLDGSP 269
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTTEETIEKEFNNIKPGAVERVKKIRDYAFVHFNKREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFNNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|322800626|gb|EFZ21593.1| hypothetical protein SINV_10038 [Solenopsis invicta]
Length = 69
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 48/52 (92%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
+ +V+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYAF+HFEDR A+
Sbjct: 17 LFQVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYAFIHFEDRDNAV 68
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRKDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRKDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R +AI + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRDDAIEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
++ SP
Sbjct: 287 HGKVLDGSP 295
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
++ SP
Sbjct: 287 HGKVLDGSP 295
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVKAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 136 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 195
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 196 VDEDTMSSVKIL 207
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 201 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 260
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 261 NGKVLDGSP 269
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRDYAFVHFNKREDAVHAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 170 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 229
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 230 VDEDTMSSVKIL 241
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 235 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 294
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 295 NGKVLDGSP 303
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRDYAFVHFNKREDAVHAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 170 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 229
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 230 VDEDTMSSVKIL 241
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 235 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 294
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 295 NGKVLDGSP 303
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 163 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 222
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 223 VDEDTMSSVKIL 234
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 228 MSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRDYAFVHFNKREDAVDAMKAL 287
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 288 NGKVLDGSP 296
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSAVKIL 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI 52
MS VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF +R++A+
Sbjct: 227 MSAVKILYVRNLMLSTTEETIEKEFSSIKPGSVERVKKIRDYAFVHFNNREDAV 280
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 36 RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95
+ KD F F+ IT GL VIIY +D KNRGFCFLEY HK+AS A++RL++
Sbjct: 254 KTKDEIFEEFD----GIT-QGLKDVIIYLQTEDKMKNRGFCFLEYTDHKAASQARRRLSS 308
Query: 96 GRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
++K + + VDWADP EEP E MSKV +L
Sbjct: 309 VKVKAFNNTVSVDWADPVEEPSDEIMSKVKVL 340
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY++NL+ TEE + F YG VERVK+IKDYAFVHF++R A+
Sbjct: 334 MSKVKVLYIKNLSMKATEEIVMATFSAYGEVERVKKIKDYAFVHFKERDNAM 385
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVLDVIVYPSAADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTG-L 57
MS VK+LYVRNL EE +++ F G VERVK+I+DYAFVHF +R +A+ L
Sbjct: 227 MSSVKILYVRNLMLTTAEETIEKEFSSVKPGSVERVKKIRDYAFVHFRNRADAVDAMNVL 286
Query: 58 SQVIIYSSP 66
+ II SP
Sbjct: 287 NGKIIDGSP 295
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 50 EAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
E + VT G+ VI+Y S D KNRGF F+EY++HK+A++A+++L GR+ +WG I VD
Sbjct: 141 EMLKVTDGVKDVIVYPSVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVD 200
Query: 109 WADPQEEPDTETMSKVLML 127
WA+P+ E D + MSKV +L
Sbjct: 201 WAEPEREVDEDIMSKVRIL 219
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKE----AFEQYGRVERVKRIKDYAFVHFEDRQEAIT--- 53
MSKV++LYVRNL + TEE L++ A VERVK+I+DYAFVHF DR +A
Sbjct: 213 MSKVRILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVKKIRDYAFVHFRDRLQATAALR 272
Query: 54 -VTGLSQVIIYSS 65
+ G S +I Y +
Sbjct: 273 QLDGKSFLITYKT 285
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 145 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 204
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 205 VDEDTMSSVKIL 216
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 210 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRKDAVEAMKAL 269
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 270 NGKVLDGSP 278
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSLVKIL 233
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSLVKILYVRNLMLSTSEEMIEKEFNNVKPGAVERVKKIRDYAFVHFSHREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGTVERVKKLRDYAFVHFFNREDAVAAMSV 290
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAMEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R +A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNRDDAVAAMSV 290
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKLGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 290
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 290
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGTVERVKKLRDYAFVHFFNREDAVAA 287
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAVAA 287
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 72 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVE 131
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 132 VDEDTMASVKIL 143
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 137 MASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERVKKIRDYAFVHFTQREDAINAMNAL 196
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 197 NGKVVDGSP 205
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSSREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSI 290
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKMLDGSP 295
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 163 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVE 222
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 223 VDEDTMATVKIL 234
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+ VK+LYVRNL TEE +++ F VERVK+I+DYAFVHF R++AI
Sbjct: 228 MATVKILYVRNLMLQTTEETIEKEFNSLKEVERVKKIRDYAFVHFAQREDAI 279
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKLGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 96 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 155
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 156 VDEETMQRVKVL 167
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 161 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 219
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 163 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVE 222
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 223 VDEDTMATVKIL 234
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 228 MATVKILYVRNLMLQTTEETIEKEFNSLKPGAVERVKKIRDYAFVHFTQREDAINAMKAL 287
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 288 NGKVVDGSP 296
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGSVERVKKLRDYAFVHFFNREDAVAA 287
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 181 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 240
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 241 VDEETMQRVKVL 252
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 246 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 301
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 163 GVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVE 222
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 223 VDEDTMATVKIL 234
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 228 MATVKILYVRNLMLQTTEETIEKEFNSLKPGAVERVKKIRDYAFVHFTQREDAINAMKAL 287
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 288 NGKVVDGSP 296
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKMLDGSP 295
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAVAA 287
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 290
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 290
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL E+ +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTAEDTIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 393 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 452
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 453 VDEETMQRVKVL 464
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 458 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 511
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 163 GVLDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVE 222
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 223 VDEDTMATVKIL 234
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 228 MATVKILYVRNLMLQTTEETIEKEFNSLKQGAVERVKKIRDYAFVHFTQREDAIHAMNAL 287
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 288 NGKVVDGSP 296
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++ +++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F+ G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEETIEKEFDSIKPGSVERVKKIRDYAFVHFNNREDAVNAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++ +++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE L++ F G VERVK+I+DYAFVHF +R +A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERVKKIRDYAFVHFNNRDDAVNAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++ +++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE L++ F G VERVK+I+DYAFVHF +R +A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERVKKIRDYAFVHFNNRDDAVNAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEVIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R +A+T +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNRDDAMTAMSV 290
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VI+Y PDD + NRGFCFLEY+ HKSA+ A++ L +G++ VWG + V+WA+P E
Sbjct: 274 GLQEVILYHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTE 333
Query: 116 PDTETM---SKVLML 127
DT+ M +KVL +
Sbjct: 334 RDTDVMANQAKVLFV 348
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++ KVL+VR L TEE L + F +G++ERV ++KDYAFVHFEDR A+
Sbjct: 341 NQAKVLFVRKLATSVTEELLVKTFSAFGKLERVYKLKDYAFVHFEDRDAAV 391
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 148 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 207
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 208 VDEETMQRVKVL 219
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 213 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 268
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSAIDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E ++E + VT G+ VI+Y S D KNRGF F+EY+SHK+A++A+++L G ++WG
Sbjct: 140 EIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHT 199
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
I VDWA+P++E D ETM +V +L
Sbjct: 200 IQVDWAEPEKELDEETMQRVRVL 222
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT-VTGL 57
M +V+VLYVRNL TEE L+ F Q G VERVK++ DYAF+HF +R++A+T + +
Sbjct: 216 MQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 276 NGKVIDGSP 284
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 343 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 402
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 403 VDEETMQRVKVL 414
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 408 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 463
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E ++E + VT G+ VI+Y S D KNRGF F+EY+SHK+A++A+++L G ++WG
Sbjct: 153 EIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHT 212
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
I VDWA+P++E D ETM +V +L
Sbjct: 213 IQVDWAEPEKELDEETMQRVRVL 235
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT-VTGL 57
M +V+VLYVRNL TEE L+ F Q G VERVK++ DYAF+HF +R++A+T + +
Sbjct: 229 MQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 288
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 289 NGKVIDGSP 297
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 45 FEDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
+ R+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG
Sbjct: 161 LKKREEIAKVTEGVLDVIMYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 220
Query: 104 DIIVDWADPQEEPDTETMSKVLML 127
I VDWA+P+ + D + M V +L
Sbjct: 221 QIAVDWAEPEIDVDEDVMETVKIL 244
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 238 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 291
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++HK+A++A+++L GR+ +WG I VDWA+P+ +
Sbjct: 171 GVKDVIVYPSLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQ 230
Query: 116 PDTETMSKVLML 127
D MSKV +L
Sbjct: 231 VDENIMSKVRIL 242
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQ----YGRVERVKRIKDYAFVHFEDRQEAIT 53
MSKV++LYVRNL + TE +K+ F Q VERVK+I+DYAFVHF +R +AIT
Sbjct: 236 MSKVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKIRDYAFVHFHNRIDAIT 292
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 55/71 (77%)
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
++ VI+Y S D KNRGF F+EY++HK+A++A+++L +GR+++WG I VDWA+P+E+
Sbjct: 271 VADVIVYPSAADKNKNRGFAFVEYETHKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDV 330
Query: 117 DTETMSKVLML 127
D + M +V +L
Sbjct: 331 DDDIMKEVKVL 341
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQ--EAITVTGLS 58
M +VKVLYVRNL +EE L+ F QYG+VERVK+I+DYAFVHF +R+ +A G S
Sbjct: 335 MKEVKVLYVRNLLIETSEESLRAHFSQYGQVERVKKIRDYAFVHFVERESADAAVKAGCS 394
Query: 59 Q 59
Q
Sbjct: 395 Q 395
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F++Y+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 173 GVVDVIVYPSATDKTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 232
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 233 VDEETMQRVKVL 244
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVL+VRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 238 MQRVKVLFVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 296
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P++E
Sbjct: 181 GVVDVIVYPSATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQE 240
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 241 VDEDIMKTVKVL 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI 52
M VKVLYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++A+
Sbjct: 246 MKTVKVLYVRNLMLNTTEETIEKEFNSLKEGSVERVKKIRDYAFVHFVTREDAL 299
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 222 VDEDTMATVKIL 233
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++AI + L
Sbjct: 227 MATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRDYAFVHFSQREDAINAMNAL 286
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 287 NGKVIDGSP 295
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 222 VDEDTMATVKIL 233
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
M+ VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++AI + L
Sbjct: 227 MATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRDYAFVHFSQREDAINAMNAL 286
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 287 NGKVIDGSP 295
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++HK+A++A+++L GR+ +WG I VDWA+P+ +
Sbjct: 171 GVKDVIVYPSLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQ 230
Query: 116 PDTETMSKVLML 127
D MSKV +L
Sbjct: 231 VDENIMSKVRIL 242
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQ----YGRVERVKRIKDYAFVHFEDRQEAIT 53
MSKV++LYVRNL + TE +K+ F Q VERVK+I+DYAFVHF +R +AIT
Sbjct: 236 MSKVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKIRDYAFVHFHNRIDAIT 292
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 176 GVLDVIVYASATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMD 235
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 236 VDEDVMETVKIL 247
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE +++ F Q+G VERVK+I+DYAFVHF R++AI
Sbjct: 241 METVKILYVRNLMIKTSEETIRKTFSQFGCVERVKKIRDYAFVHFTSREDAI 292
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEVAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K +F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 181 EEVSKVTEGVIDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 240
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 241 DWAEPEIDVDEDVMETVKIL 260
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE +++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 254 METVKILYVRNLMMETSEETIRKVFSQWNPGCVERVKKIRDYAFVHFNSRDDAV 307
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 181 EEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 240
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 241 DWAEPEIDVDEDVMETVKIL 260
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL EE +++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 254 METVKILYVRNLMMETNEETIRQIFSQWNPGCVERVKKIRDYAFVHFTSRDDAV 307
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 183 EEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 242
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 243 DWAEPEIDVDEDVMETVKIL 262
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE +++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 256 METVKILYVRNLMMETSEEAIRQIFSQFNPGCVERVKKIRDYAFVHFTSRDDAV 309
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 180 EEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 239
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 240 DWAEPEIDVDEDVMETVKIL 259
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE L++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 253 METVKILYVRNLMIETSEEILRQTFGQFNPGCVERVKKIRDYAFVHFASRDDAV 306
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 170 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 229
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 230 DWAEPEIDVDEDVMETVKIL 249
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 243 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 296
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 160 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 219
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 220 DWAEPEIDVDEDVMETVKIL 239
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 233 METVKILYVRNLMIETTEDTIKKIFGQFNPGCVERVKKIRDYAFVHFASREDAV 286
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 124 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 183
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 184 DWAEPEIDVDEDVMETVKIL 203
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 197 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 250
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 126 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 185
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 186 DWAEPEIDVDEDVMETVKIL 205
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 199 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 252
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 171 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 231 DWAEPEIDVDEDVMETVKIL 250
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 244 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 297
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW-GCDIIVDWADPQE 114
G+ VI+Y+S D +NRGF F+EY HK+A++A++++ G++K+W G D+ VDWA+P+
Sbjct: 171 GVVNVILYTSVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEP 230
Query: 115 EPDTETMSKVLML 127
+ D +TMSKV++L
Sbjct: 231 QVDEDTMSKVMVL 243
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVHFEDRQEAIT 53
MSKV VLYVRNL TE++L+E F G +V +VK+I+D+AF+H+ R+EA T
Sbjct: 237 MSKVMVLYVRNLVLSTTEDELREVFSLNGSLKVSKVKKIRDFAFIHYRSREEATT 291
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 34/155 (21%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRV------------------------ERVKR-IKDYA 41
+++ + + C E++L FEQ G + E KR +++
Sbjct: 106 VFIGKIPRDCFEDELIPVFEQIGPIYMFRLMMELNGINRGFGFCVYTNREDTKRAVQELN 165
Query: 42 FVHFE-DRQ-------EAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR 92
+ FE +RQ E VT G+ VI Y S D KNRGF F+EY SHK+A++A+++
Sbjct: 166 IMKFEKERQSEEEILSEMKRVTDGVKDVISYPSVTDKTKNRGFAFIEYGSHKAAAMARRK 225
Query: 93 LATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
L G + +WG I VDWA+P+ E + + MSKV +L
Sbjct: 226 LLPGHIHLWGHQIAVDWAEPEREVNEDIMSKVKIL 260
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 5/57 (8%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYG-----RVERVKRIKDYAFVHFEDRQEAI 52
MSKVK+LYVRNL TEE L+++F + VERVK+I DYAF+HF +R++A+
Sbjct: 254 MSKVKILYVRNLMLSTTEESLRDSFIKAAGGDPNSVERVKKISDYAFIHFREREQAL 310
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 165 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVE 224
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 225 VDEDIMKSVKVL 236
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKDYAFVHFEDRQEAI 52
M VKVLYVRNL TEE LKE+FE G VERVK+I+DYAFVHF+ R+EA+
Sbjct: 230 MKSVKVLYVRNLLLTTTEESLKESFENVVSPGSVERVKKIRDYAFVHFKTREEAV 284
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 188 EEVSKVTEGVIDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 247
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 248 DWAEPEIDVDEDVMETVKIL 267
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE +++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 261 METVKILYVRNLMMETSEETIRKVFSQWNPGCVERVKKIRDYAFVHFNSRDDAV 314
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 168 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 227
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 228 DWAEPEIDVDEDVMETVKIL 247
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 241 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 294
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 55/72 (76%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+++VI+YSS D KNRGF F+EY +H++AS A+++L R+++WG +I VDWA+P+ E
Sbjct: 148 GVTKVIVYSSITDKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENE 207
Query: 116 PDTETMSKVLML 127
+ + MS+V +L
Sbjct: 208 IEEDVMSQVTVL 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVHFEDRQEA 51
MS+V VLYVRNL+ TE+ L+E F + V+++K ++D+AF+HF R++A
Sbjct: 213 MSQVTVLYVRNLSLTTTEQVLRELFNRVSDDNVQKLKMMRDFAFIHFSSREKA 265
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPDDNK-KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G++ VI+YS PD++K +NRGFCF+++ HK+AS K+++A +++ + D+ VDWA+ QE
Sbjct: 325 GVTDVIVYSVPDNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQE 384
Query: 115 EPDTETMSKVLML 127
EPD +TMSKV +L
Sbjct: 385 EPDEDTMSKVKVL 397
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 43/52 (82%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF+HF +R++ +
Sbjct: 391 MSKVKVLYIRNIKEAVTEEKLTEIFKEYASLDRVKKVKDYAFIHFNEREDCM 442
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMETVKIL 248
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 242 METVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSRDDAV 295
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMETVKIL 248
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMMETTEDTIKKIFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 295
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 131 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 190
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 191 DWAEPEIDVDEDVMETVKIL 210
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 204 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 257
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 205 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 264
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 265 DWAEPEIDVDEDVMETVKIL 284
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 278 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 331
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%)
Query: 60 VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119
VI+Y S D KNRGF F+EY SH+ A++A+++L TG++++WG I VDWA+P++E D E
Sbjct: 167 VIVYPSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQE 226
Query: 120 TMSKVLML 127
M +V +L
Sbjct: 227 IMDQVKVL 234
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
M +VKVLY RNL TEE +++AF ++G VERVK+IKDY F+HF +++A
Sbjct: 228 MDQVKVLYARNLLLSTTEETIEQAFSKFGEVERVKKIKDYCFIHFRTKEQA 278
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI Y S D KNRGF F+EY+SHK+A++A+++L G++++W I VDWA+P+ E
Sbjct: 208 GVKDVISYPSVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPERE 267
Query: 116 PDTETMSKVLML 127
+ + MSKV +L
Sbjct: 268 VNEDIMSKVKIL 279
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAF-----EQYGRVERVKRIKDYAFVHFEDRQEA 51
MSKVK+LYVRNL TE+ L+E F +ERVK+I DYAF+HF++R++A
Sbjct: 273 MSKVKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKISDYAFIHFKEREQA 328
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 295
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 182 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 241
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 242 VDEDVMETVKIL 253
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 247 METVKILYVRNLMIETTEEAIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 300
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 206 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 265
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 266 DWAEPEIDVDEDVMETVKIL 285
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 279 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 332
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 131 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 190
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 191 DWAEPEIDVDEDVMETVKIL 210
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 204 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 257
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 131 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 190
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 191 DWAEPEIDVDEDVMETVKIL 210
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 204 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 257
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 131 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 190
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 191 DWAEPEIDVDEDVMETVKIL 210
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 204 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 257
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 320 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 379
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 380 VDEDVMETVKIL 391
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 385 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFASREDAV 438
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMQTVKIL 248
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 170 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 229
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 230 DWAEPEIDVDEDVMETVKIL 249
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 243 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 296
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMETVKIL 248
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 179 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 238
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 239 VDEDVMETVKIL 250
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 244 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTSREDAV 297
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 242 METVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSRDDAV 295
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 168 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 227
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 228 DWAEPEIDVDEDVMETVKIL 247
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 241 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 294
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 48 RQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
R+E VT G++ +I+Y + D KNRGF F+EY SH++A++A+++L R+++W +
Sbjct: 130 REEMEKVTDGVADIIMYPAASDKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVA 189
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWA+P+ E D ETM+ V +L
Sbjct: 190 VDWAEPELEVDEETMATVKIL 210
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 53
M+ VK+LYVRNL TE +L +AF + VERVK+I+DYAFVHF R A+T
Sbjct: 204 MATVKILYVRNLMLTTTEAQLNKAFSHHAPVERVKKIRDYAFVHFNSRSGALT 256
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPDDNK-KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G++ VI+YS PD+ K +NRGFCF+++ HK+AS K+++A +++ + D+ VDWA+ QE
Sbjct: 332 GVTDVIVYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQE 391
Query: 115 EPDTETMSKVLML 127
EPD +TMSKV +L
Sbjct: 392 EPDEDTMSKVKVL 404
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF+HF +R + +
Sbjct: 398 MSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRVKKVKDYAFIHFNERDDCM 449
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 182 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 241
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 242 VDEDVMETVKIL 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 247 METVKILYVRNLMIETTEEAIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 300
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F++Y+SH+ ++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVL+VRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLFVRNLMISTTEETIKGEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPDDNK-KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ VI+YS PD+ K KNRGFCF+++ HK+AS K+++A +++ + D+ VDWA+ QE
Sbjct: 307 GVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQE 366
Query: 115 EPDTETMSKVLML 127
EPD +TMSKV +L
Sbjct: 367 EPDEDTMSKVKVL 379
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF+HF +R + +
Sbjct: 373 MSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFNERDDCL 424
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 70 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 129
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 130 VDEDVMETVKIL 141
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 135 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAV 188
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+ D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYAGAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 177 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 236
Query: 116 PDTETMSKVLML 127
D + M V +L
Sbjct: 237 VDEDVMETVKIL 248
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +E+ +K+ F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETSEDTIKKIFGQFNPGCVERVKKIRDYAFVHFSSREDAV 295
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 56 GLSQVIIYSSPDDNK-KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G++ VI+YS PD+ K +NRGFCF+++ HK+AS K+++A +++ + D+ VDWA+ Q+
Sbjct: 316 GVTDVIVYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQD 375
Query: 115 EPDTETMSKVLML 127
EPD +TMSKV +L
Sbjct: 376 EPDADTMSKVKVL 388
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF+HF +R + +
Sbjct: 382 MSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRVKKVKDYAFIHFNERDDCV 433
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 53/68 (77%)
Query: 60 VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119
VI+Y S +D KNRGF F+EY++H++A++A+++L GR+++WG I+VDWA+P+++ D +
Sbjct: 168 VIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED 227
Query: 120 TMSKVLML 127
M V +L
Sbjct: 228 VMRGVKIL 235
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M VK+LYVRNL + TEE + + F + G VERVK+++D+AF+HF R++A+
Sbjct: 229 MRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNA 284
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 53/68 (77%)
Query: 60 VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119
VI+Y S +D KNRGF F+EY++H++A++A+++L GR+++WG I+VDWA+P+++ D +
Sbjct: 168 VIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED 227
Query: 120 TMSKVLML 127
M V +L
Sbjct: 228 VMRGVKIL 235
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M VK+LYVRNL + TEE + + F + G VERVK+++D+AF+HF R++A+
Sbjct: 229 MRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNA 284
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 53/68 (77%)
Query: 60 VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119
VI+Y S +D KNRGF F+EY++H++A++A+++L GR+++WG I+VDWA+P+++ D +
Sbjct: 168 VIVYPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED 227
Query: 120 TMSKVLML 127
M V +L
Sbjct: 228 VMRGVKIL 235
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M VK+LYVRNL + TEE + + F + G VERVK+++D+AF+HF R++A+
Sbjct: 229 MRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNA 284
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+ S D KNRGF F+ Y+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVMDVIVCPSATDKTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM KV +L
Sbjct: 227 VDEETMQKVKVL 238
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M KVKVLYVRNL TEE +K F +Y G VERVK+I+DYAFVHF R AI
Sbjct: 232 MQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRDYAFVHFFRRDYAIAA 287
>gi|159164130|pdb|2DIS|A Chain A, Solution Structure Of The Rrm Domain Of Unnamed Protein
Product
Length = 109
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ +
Sbjct: 35 GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94
Query: 116 PDTETMSKV 124
D + M V
Sbjct: 95 VDEDVMETV 103
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 51/72 (70%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ I+Y S D KNRGF F+EY+SHK+A++A+++L G ++WG I VDWA+P+++
Sbjct: 183 GVVDAIVYPSTTDKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKD 242
Query: 116 PDTETMSKVLML 127
D E M +V +L
Sbjct: 243 VDEEVMQRVRVL 254
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +V+VLYVRNL +EE L++ F ++ G VERVK++ DYAF+H+ R +A+T L
Sbjct: 248 MQRVRVLYVRNLMLETSEETLRQEFSRFKPGCVERVKKLSDYAFIHYRSRSDALTALSL 306
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 8/92 (8%)
Query: 36 RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95
+ K+ F HF + GL V++Y+ P + +NRGFCF+E++S K+A AK+ +
Sbjct: 167 KTKEDIFNHFNR-----FLGGLVDVMVYTYPG-STQNRGFCFIEFNSSKNAMFAKETIVA 220
Query: 96 GRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
R WGC+++VDWADP++EPD E M V +L
Sbjct: 221 SR--PWGCEVVVDWADPEQEPDEEIMKSVKVL 250
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEA-------- 51
M VKVLY++NL+ T+ L+ AF + G +VERVK I+D+AFVHF R A
Sbjct: 244 MKSVKVLYIKNLSPRVTDADLRRAFAERGLQVERVKVIRDFAFVHFFTRSLAEKAMKVCQ 303
Query: 52 -ITVTGLSQVIIYSSPDDNK 70
+T+ L + ++ P NK
Sbjct: 304 NLTLDDLPLQVSWAKPPINK 323
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 51/69 (73%)
Query: 59 QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118
VI+Y S D KNRGF F+EY+ H+SA++A+++L G++++WG I VDWA+P+++ D
Sbjct: 197 NVIVYPSATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDE 256
Query: 119 ETMSKVLML 127
+ M +V +L
Sbjct: 257 DIMDQVKVL 265
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
M +VKVLY+RNL TEE ++ F+++ VERVK+IKDY FVHF R+ A
Sbjct: 259 MDQVKVLYIRNLQLNTTEETIENLFKKFAEVERVKKIKDYCFVHFVTREGA 309
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 7/80 (8%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SHK+A++A+++L G ++WG I VDWA+P+++
Sbjct: 179 GVVDVIVYPSSSDRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEKD 238
Query: 116 PDTETMSKV-------LMLD 128
+ E M +V LMLD
Sbjct: 239 MEEEAMQRVRVLYVRNLMLD 258
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT----- 53
M +V+VLYVRNL TEE L+ F ++ G VERVK++ DYAFVHF R EA+
Sbjct: 244 MQRVRVLYVRNLMLDTTEETLRREFSRFKPGSVERVKKLTDYAFVHFRSRSEALATLAVM 303
Query: 54 ----VTGLSQVIIYSSPDDNKK 71
+ G + + + P NK+
Sbjct: 304 NGVQIDGTTVEVSLAKPTGNKE 325
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+ Y+SH++A++A+++L G ++WG I V WA P++E
Sbjct: 167 GVMDVIVYPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM KV +L
Sbjct: 227 VDEETMQKVKVL 238
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M KVKVLYVRNL TEE +K F +Y G VERVK+I+DYAFVHF R AI
Sbjct: 232 MQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRDYAFVHFFRRDYAIAA 287
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 13/85 (15%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL-------------ATGRLKVWG 102
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWG 221
Query: 103 CDIIVDWADPQEEPDTETMSKVLML 127
I VDWA+P+ E D +TMS V +L
Sbjct: 222 HPIAVDWAEPEVEVDEDTMSSVKIL 246
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 240 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 299
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 300 NGKVLDGSP 308
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY HK+A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 181 GVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIE 240
Query: 116 PDTETMSKVLML 127
+ M V +L
Sbjct: 241 VEESVMETVKIL 252
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL + +E+ L+ AF + G +ERVK+I+DYAFVHF R A+
Sbjct: 246 METVKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERVKKIRDYAFVHFNTRDNAL 300
>gi|159164094|pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 67
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 68 KDLEGENIEIVFAKPPDQKR 87
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +KNRGF F+EY H +A++A+++L R ++WG I VDWA+P+ E
Sbjct: 208 GVCDVIVYPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEVE 267
Query: 116 PDTETMSKVLML 127
D + M+ V +L
Sbjct: 268 VDDDIMATVKIL 279
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKDYAFVHFEDRQEAIT-VTG 56
M+ VK+LYVRNL TEE+L+ F G +ERVK+I+DY FVHF R+ AI +
Sbjct: 273 MATVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERVKKIRDYGFVHFNTRENAIKCLKQ 332
Query: 57 LSQVIIYSSP 66
L+ I+ SP
Sbjct: 333 LNGKILDGSP 342
>gi|324505959|gb|ADY42552.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324526563|gb|ADY48690.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 248
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 15/91 (16%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-------- 52
MSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF+HF++R+ A+
Sbjct: 1 MSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAFIHFKEREPALKAMEALNG 60
Query: 53 -TVTGLSQVIIYSSPDDNKK------NRGFC 76
+ G++ I + P +KK RGF
Sbjct: 61 TVLEGIAIEISLAKPQGDKKKTVRGRGRGFG 91
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 54 VTGLSQVIIYSSPDDN------KKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII- 106
TGL+ VI+Y ++ +KNRGFCFLEY++H++AS A++RL +GR+K W I+
Sbjct: 273 TTGLTDVILYYQVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVT 332
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP P + M KV +L
Sbjct: 333 VDWADPINTPADDIMDKVKVL 353
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
M KVKVLYV+NL +E+ + + F +G +E+VK++KDYAFVHF++R EA
Sbjct: 347 MDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKVKKLKDYAFVHFKNRDEA 397
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 154 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 213
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 214 VDEDTMSSVKIL 225
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 279 NGKVLDGSP 287
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY SHK+A++A+++L G ++WG I VDWA+P+++
Sbjct: 182 GVVDVIMYPSSTDKSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEKD 241
Query: 116 PDTETMSKV 124
+ E M +V
Sbjct: 242 VEEEVMQRV 250
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +V+V+YVRNL TEE L + F + G VERVK++ DYAFVH+ R++A+ +
Sbjct: 247 MQRVRVIYVRNLMLSTTEETLFQEFSHFKPGSVERVKKLTDYAFVHYYCREDALAALAI 305
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 154 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 213
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 214 VDEDTMSSVKIL 225
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 279 NGKVLDGSP 287
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 154 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 213
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 214 VDEDTMSSVKIL 225
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 279 NGKVLDGSP 287
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|159164162|pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous
Nuclear Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 12 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 63
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 154 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 213
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 214 VDEDTMSSVKIL 225
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 219 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 278
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 279 NGKVLDGSP 287
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY HK+A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 182 GVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIE 241
Query: 116 PDTETM 121
+ M
Sbjct: 242 VEESVM 247
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 334 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 393
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 394 VDEDTMSSVKIL 405
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 399 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 458
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 459 NGKVLDGSP 467
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 147 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 206
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 207 VDEDTMSSVKIL 218
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 212 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 271
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 272 NGKVLDGSP 280
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>gi|149018944|gb|EDL77585.1| rCG25340, isoform CRA_a [Rattus norvegicus]
gi|149018947|gb|EDL77588.1| rCG25340, isoform CRA_a [Rattus norvegicus]
Length = 254
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 28 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 87
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 88 KDLEGENIEIVFAKPPDQKR 107
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 95 TGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
+G++KVWG V+WADP E+PD E M+KV +L
Sbjct: 2 SGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL 34
>gi|221039872|dbj|BAH11699.1| unnamed protein product [Homo sapiens]
Length = 256
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERV+++KDYAF+HF++R A+
Sbjct: 28 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVEKLKDYAFIHFDERDGAVKAMEEMNG 87
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 88 KDLEGENIEIVFAKPPDQKR 107
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 95 TGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
+G++KVWG V+WA+P E+PD E M+KV +L
Sbjct: 2 SGKVKVWGNVGTVEWANPIEDPDPEVMAKVKVL 34
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 155 EEMSKVTEGVVNVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAV 214
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ E D E M KV +L
Sbjct: 215 DWAEPEPEVDEEVMRKVKVL 234
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 11/79 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI------ 52
M KVKVLYVRNL TE+ +K+AFE + V RVK+I+DYAFVH++ R++AI
Sbjct: 228 MRKVKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRVKKIRDYAFVHYKTREDAIAAMTAM 287
Query: 53 ---TVTGLSQVIIYSSPDD 68
T+ G + ++ P D
Sbjct: 288 NGSTLEGAKLEVTFAKPVD 306
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y + D KNRGF F+EY+SH++A++A++RL G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPNATDKTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMMSTTEETIKAEFNKFKPGVVERVKKLRDYAFVHFFHREDAVAA 287
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ +VI+YSS D KKNRGF F+EY+SH++A+LA+++ RL +WG ++ VDWA+P+
Sbjct: 133 GVVRVILYSSVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAEPEPV 192
Query: 116 PDTETMSKVLML 127
+ E +SKV +L
Sbjct: 193 VEEEILSKVRVL 204
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEA 51
+SKV+VLYVRNL E++L+E F+ G VE+VK + D+AF+HF R +A
Sbjct: 198 LSKVRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKILNDFAFIHFGSRSQA 250
>gi|324510250|gb|ADY44287.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 272
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+ + L+
Sbjct: 1 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNG 60
Query: 60 VIIYSSP 66
++ P
Sbjct: 61 TVLEGVP 67
>gi|26338141|dbj|BAC32756.1| unnamed protein product [Mus musculus]
Length = 307
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 44/54 (81%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 12 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKA 65
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 297 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 356
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 357 DLEGENIEIVFAKPPDQKR 375
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 266 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 300
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNR FCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQVK 303
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 297 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 356
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 357 DLEGENIEIVFAKPPDQKR 375
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 266 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 300
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVK 303
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 25/121 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ N+ ++ T +++ E+Y V G+ +I Y P
Sbjct: 127 LFIGNIPRHVTLSEIQSVLEKY-------------------------VEGIVDIIFYHEP 161
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
++ NRGF F+E++SH+ A++A+++L+ G L +WG I VDWA+P + + + +V
Sbjct: 162 YNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQVTK 221
Query: 127 L 127
L
Sbjct: 222 L 222
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L+++F +YG +ERVK++KDYAF+HFE+R A+
Sbjct: 300 AQVKVLFVRNLANSVTEEILEKSFSEYGNLERVKKLKDYAFIHFEERDGAVKALEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 360 ELEGEPIEIVFAKPPDQKR 378
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GLS VI+Y P D KNRGFCFLEY+ HK+A+ K
Sbjct: 269 GLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQVK 303
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 25/121 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ N+ ++ T +++ E+Y V G+ +I Y P
Sbjct: 488 LFIGNIPRHVTLSEIQSVLEKY-------------------------VEGIVDIIFYHEP 522
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
++ NRGF F+E++SH+ A++A+++L+ G L +WG I VDWA+P + + + +V
Sbjct: 523 YNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQVTK 582
Query: 127 L 127
L
Sbjct: 583 L 583
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR-LATGRLKVWGCDIIVDWADP 112
+ G+ +VI Y + + NRGF F+E+ SH A++A+++ LA G ++ WG + VDWA+P
Sbjct: 138 IDGIVKVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEP 197
Query: 113 QE--EPDTETMSKVLML 127
+ +PD T KVL +
Sbjct: 198 EPMVDPDVMTQVKVLYM 214
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQ-YGRV--ERVKRIKDYAFVHFEDRQEA 51
M++VKVLY++N+ + T ++LK + G + ER+ + +YAF+HF++R A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFIERIYKRDNYAFIHFDERSFA 259
>gi|326916227|ref|XP_003204411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Meleagris gallopavo]
Length = 448
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 9/77 (11%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------V 54
VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ +
Sbjct: 223 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL 282
Query: 55 TGLSQVIIYSSPDDNKK 71
G + I+++ P D K+
Sbjct: 283 EGENIEIVFAKPPDQKR 299
>gi|71894995|ref|NP_001026254.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Gallus
gallus]
gi|53129801|emb|CAG31416.1| hypothetical protein RCJMB04_6c17 [Gallus gallus]
Length = 448
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 9/77 (11%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------V 54
VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ +
Sbjct: 223 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL 282
Query: 55 TGLSQVIIYSSPDDNKK 71
G + I+++ P D K+
Sbjct: 283 EGENIEIVFAKPPDQKR 299
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G ++++Y S D +NRGF F+EY HKSA+ A+K+ L +WG + +DWA+P+++
Sbjct: 171 GAEELVVYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQ 230
Query: 116 PDTETMSKVLML 127
D++ M V +L
Sbjct: 231 VDSDIMENVKIL 242
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL E L++ FE +ERVK+I+D+AFVHF R++A+
Sbjct: 236 MENVKILYVRNLMLNTDEITLRKYFEMGDIHCIERVKKIRDFAFVHFTTREKAL 289
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y + D KNRGF F+EY+SH++A++A++RL G + WG I VDWADP++
Sbjct: 167 GVVDVIVYPNATDKTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKI 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TE+K+K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEDKIKAEFNKFKPGVVERVKKLRDYAFVHFFHREDAV 285
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++VKVL+VRNL TEE L+++F ++G++ERVK++KDYAF+HFE+R A+
Sbjct: 300 AQVKVLFVRNLANGVTEELLEKSFSEFGKLERVKKLKDYAFIHFEERDGAVKALEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 360 ELEGEPIEIVFAKPPDQKR 378
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 4/45 (8%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK----KRLATG 96
GLS VI+Y PDD KKNRGFCFLEY+ HK+A+ K + LA G
Sbjct: 269 GLSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANG 313
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLA-TGRLKVWGC 103
E R E +T + VI+Y S D KNRGF F+EY +H++A++A+++L +++WG
Sbjct: 142 EIRSEMAKITEHVVDVIVYPSASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGH 201
Query: 104 DIIVDWADPQEEPDTETMSKV 124
I VDWA+P+ E D E M +V
Sbjct: 202 KIAVDWAEPEIEVDEEIMDQV 222
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHF---EDRQEAITV 54
M +VK++YVRNL TEE L+E F+ RVERVK+I+DYAF+HF ED AIT+
Sbjct: 219 MDQVKIVYVRNLLLSTTEESLREIFQSIARVERVKKIRDYAFIHFTSKEDAHMAITL 275
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 55/176 (31%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR---QEAIT-- 53
++V + + TEE+L++ F G V++V+ +KD Y FV F ++ +EA+
Sbjct: 114 VFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVVQF 173
Query: 54 ------------------------------------------VTGLSQVIIYSSPDDNKK 71
G++ V + PD++ +
Sbjct: 174 NNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNSSR 233
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
NRGF F+EY + A A+K + K+ C++ V+WADP +EPD M++V +L
Sbjct: 234 NRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVL 289
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 19/90 (21%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA- 51
M++V+VLY+RNL +EE++++ FE+YG +E+V ++ +D+ FVHF +R EA
Sbjct: 283 MNQVRVLYIRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAE 342
Query: 52 ----------ITVTGLSQVIIYSSPDDNKK 71
IT G + ++ P D K+
Sbjct: 343 ATLARHHDTPITYQGRPLSLSFAKPIDKKQ 372
>gi|444729720|gb|ELW70127.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 224
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
M+KVKVL VRNL TE LK+ F Q G++ERVK++KDYAF+HF++R A+ G
Sbjct: 1 MAKVKVLSVRNLANMVTEGILKKTFSQLGKLERVKKLKDYAFIHFDERDGAVKAMGERNG 60
Query: 61 ---------IIYSSPDDNKK 71
I+++ P D K+
Sbjct: 61 KDLEGENIDIVFAKPPDQKR 80
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 43/51 (84%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++VKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 303 AQVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 353
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK----KRLAT 95
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ K + LAT
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQVKVLFVRNLAT 315
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 9/79 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT-------- 53
++ ++L+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 300 AQARLLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGK 359
Query: 54 -VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 360 DLEGENIEIVFAKPPDQKR 378
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAK 90
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQAR 303
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G++ + +Y S D NRGF F+E+ H++A++A+++L GR+ +W +I VDWADP+
Sbjct: 167 GITDIYLYPSAHDKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPG 226
Query: 115 EP-DTETMSKVLML 127
+P D + M V L
Sbjct: 227 DPIDEDVMENVTAL 240
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITV 54
M V L+VRNL+ ++K++E F++ ++ ++K+I +AF+H+E RQ A V
Sbjct: 234 MENVTALFVRNLSLDVQQQKIREIFQKSTKIPILKLKKINHFAFIHYESRQAAQAV 289
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ + +Y S D NRGF F+E+ H++A++A+++L GR+ +W +I VDWADP+
Sbjct: 152 GIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPG 211
Query: 115 EP-DTETMSKVLML 127
+P D E M V L
Sbjct: 212 DPIDEEVMENVTAL 225
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITV 54
M V L+VRNL+ ++K+++ F++ ++ ++K+I +AFVH+E+R+ A +V
Sbjct: 219 MENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKLKKINHFAFVHYENRKAAQSV 274
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ + +Y S D NRGF F+E+ H++A++A+++L GR+ +W +I VDWADP+
Sbjct: 163 GIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPG 222
Query: 115 EP-DTETMSKVLML 127
+P D E M V L
Sbjct: 223 DPIDEEVMENVTAL 236
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITV 54
M V L+VRNL+ ++K+++ F++ ++ ++K+I +AFVH+E+R+ A V
Sbjct: 230 MENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKLKKINHFAFVHYENRKAAQNV 285
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ + +Y S D NRGF F+E+ H++A++A+++L GR+ +W +I VDWADP+
Sbjct: 161 GIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPG 220
Query: 115 EP-DTETMSKVLML 127
+P D E M V L
Sbjct: 221 DPIDEEIMESVTAL 234
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITV 54
M V L+VRNL+ +++K+++ F++ ++ ++K+I +AFVH+E RQ A TV
Sbjct: 228 MESVTALFVRNLSLDMSQQKVRDIFQKNTKIPILKLKKINHFAFVHYESRQAAQTV 283
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ + +Y S D NRGF F+E+ H++A++A+++L GR+ +W +I VDWADP+
Sbjct: 167 GIIDIYLYPSAHDKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPG 226
Query: 115 EP-DTETMSKVLML 127
+P D E M V L
Sbjct: 227 DPIDEEIMESVTAL 240
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITV 54
M V L+VRNL +++K+++ F++ ++ ++K+I +AFVH+E+RQ A TV
Sbjct: 234 MESVTALFVRNLNLDMSQQKVRDIFQKNTKIPILKLKKINHFAFVHYENRQAAQTV 289
>gi|339262138|ref|XP_003367557.1| heterogeneous nuclear ribonucleo protein Q [Trichinella spiralis]
gi|316963436|gb|EFV49063.1| heterogeneous nuclear ribonucleo protein Q [Trichinella spiralis]
Length = 280
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
VK+LY+R L +EE+L+ F QYG VERVKRIKDYAFVHF +R++A
Sbjct: 3 VKILYLRPLKDSVSEEELRVRFSQYGTVERVKRIKDYAFVHFAEREQA 50
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G++ + +Y S D NRGF F+E+ H++A++A+++L G++ +W +I VDWADP+
Sbjct: 161 GITDIYVYPSAQDRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPG 220
Query: 115 EP-DTETMSKVLML 127
+P D + M V L
Sbjct: 221 DPIDEDIMETVTAL 234
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITVTGLS 58
M V L+VRNL +++K++E +Y V ++K+I +AFVH+E+R+ A TV +
Sbjct: 228 METVTALFVRNLALDMSQQKVREILYRYTNVPILKLKKINHFAFVHYENREAAKTVMNIM 287
Query: 59 Q 59
+
Sbjct: 288 E 288
>gi|159163837|pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 71
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 72 NGKVLDGSP 80
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE-E 115
++ + +Y S D NRGF F+E+ H++A++A+++L G++ +W +I VDWADP+ E
Sbjct: 161 ITDIYLYPSAHDRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGE 220
Query: 116 P-DTETMSKVLML 127
P D + M +V L
Sbjct: 221 PIDEDIMERVTTL 233
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITVTGLS 58
M +V L+VRNL +++ ++ F ++ V ++K+I +AF+H+E+RQ A V +
Sbjct: 227 MERVTTLFVRNLALDISQQNVRGIFHRHTNVPILKLKKINHFAFIHYENRQAAQIVMDIM 286
Query: 59 Q 59
Q
Sbjct: 287 Q 287
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+ D KNRGF F+EY+SH++A++A++RL G ++WG + VDWA P++E
Sbjct: 167 GVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDAETMRRVKVL 238
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAMSV 290
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+ D KNRGF F+EY+SH++A++A++RL G ++WG + VDWA P++E
Sbjct: 167 GVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDAETMRRVKVL 238
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAMSI 290
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ V +Y S D NRGF F+E+ H++A++A+++L G++ +W +I VDWADP+
Sbjct: 90 GIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPG 149
Query: 115 EP-DTETMSKVLML 127
+P D + M V L
Sbjct: 150 DPVDEDIMETVTAL 163
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITVTGLS 58
M V L+VRNLT +++K++E F ++ V ++K+I +AF+H+E+R A V +
Sbjct: 157 METVTALFVRNLTLEMSQQKVREVFHRHTNVPILKLKKINHFAFIHYENRGAAQAVMDIM 216
Query: 59 Q 59
Q
Sbjct: 217 Q 217
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR-LATGRLKVWGCDIIVDWADP 112
+ G+ +VI Y + + NRGF F+E+ SH A++A+++ LA G ++ WG + VDWA+P
Sbjct: 138 IDGIVKVITYPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEP 197
Query: 113 QE--EPDTETMSKVLML 127
+ +PD T KVL +
Sbjct: 198 EPMVDPDVMTQVKVLYM 214
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQ-YGRV--ERVKRIKDYAFVHFEDRQEA 51
M++VKVLY++N+ + T ++LK + G + ER+ + +YAF+HF++R A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFIERIYKRDNYAFIHFDERSFA 259
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 74 GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
GFC +EYDS +SA+ AK++L G +KV+G DIIVDWADP E
Sbjct: 118 GFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPNE 158
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+KVL+V +++ + E++KE F ++G ++ V++ DYAFVH E+R +A
Sbjct: 165 IKVLHVGIISKRSSMERIKELFGEHGPIQLVEKFADYAFVHCENRDDA 212
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE- 114
G+ + +Y + + NRGF F+E+ H++A++A+++L G++ +W +I VDWADP+
Sbjct: 150 GIVDIYVYPNAQNRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPG 209
Query: 115 EP-DTETMSKVLML 127
+P D + M V L
Sbjct: 210 DPVDEDIMETVTAL 223
Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITVTGLS 58
M V L+VRNL+ ++K+KE ++ V ++K+I +AF+H+E R+ A TV +
Sbjct: 217 METVTALFVRNLSIDMPQQKVKEIIYRHTNVPILKLKKINHFAFIHYESREAAQTVMDIM 276
Query: 59 Q 59
Q
Sbjct: 277 Q 277
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 38 KDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGR 97
+D++ E + + G+ +I P + +NRGF F+E+ SH A+ A ++
Sbjct: 355 QDWSLEQLEAHLKEAGIRGVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRAD 414
Query: 98 LKVWGCDIIVDWADPQEEPDTETMSKV 124
++ G + VDWA+P EP + MS+V
Sbjct: 415 FRLSGQKVRVDWAEPLNEPGEDVMSQV 441
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MS+VK +YV NL E + F +YG++ER+ R KD+AFV++E+R A+
Sbjct: 438 MSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEERANAL 497
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL++VI+Y PD K RGF FLEY HK+A+ A+++L T + + G I V+WA+ +E
Sbjct: 142 GLTEVIVYPDPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKE 201
Query: 116 P 116
P
Sbjct: 202 P 202
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQV 60
+KVK +Y N+ ++ TE+ L AF QYG +ER+K++ DYAF+ F R+ A+ + G+
Sbjct: 209 NKVKEVYCGNIAEHITEDTLNTAFLQYGSIERIKKLHDYAFICFASRESALKAIEGVRGT 268
Query: 61 II 62
+I
Sbjct: 269 VI 270
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 55/176 (31%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQ------EAI 52
++V +++ TE+ L+ F G V +++ +K+ YAF+ FED+ E I
Sbjct: 49 VFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAVEKI 108
Query: 53 T-----------------------------------------VTGLSQVIIYSSPDDNKK 71
+ G++ + PD+ +
Sbjct: 109 SNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMDPDNPTR 168
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
NRGF F+E+ + A A+K A+ ++ + V+WADP +EPD + M V +L
Sbjct: 169 NRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDEDVMKNVRVL 224
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 19/90 (21%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA- 51
M V+VLYVRNL + E LK+ FE++G +E+V ++ +D+ FVHFE R+ A
Sbjct: 218 MKNVRVLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAE 277
Query: 52 ----------ITVTGLSQVIIYSSPDDNKK 71
IT G ++ ++ P D K+
Sbjct: 278 EALVRHNNQPITYQGRDLIVSFAKPMDKKQ 307
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93
GL++VIIY SPD ++N GFCFLEYDSHKSAS+AK+RL
Sbjct: 141 GLTEVIIYKSPDL-EENGGFCFLEYDSHKSASMAKQRL 177
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQ 59
MSKVK +YVRN+ +E +LK F +YG++E+V++I+DY FV+F R+ A+ + G++
Sbjct: 286 MSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGING 345
Query: 60 VII 62
I
Sbjct: 346 AYI 348
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 54 VTGLSQVIIYSSPDDNKK---NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDI-IVDW 109
T L VI+Y S D NRGF FLEY ++ + + A R G++++WG + V W
Sbjct: 215 TTDLQDVIVYQSCDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTW 274
Query: 110 ADPQEEPDTETMSKV 124
A+ +E PD MSKV
Sbjct: 275 AEAREIPDYAVMSKV 289
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 38/110 (34%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL---------------------- 93
G+ VI+Y S D KNRGF F+EY SHK+A++A+++L
Sbjct: 182 GVVDVIMYPSSTDKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSAL 241
Query: 94 ----------------ATGRLKVWGCDIIVDWADPQEEPDTETMSKVLML 127
TG ++WG I VDWA P+++ + E M +V +L
Sbjct: 242 GFFFFTSMCVSSGRGCTTGTFQLWGQSIQVDWAQPEKDVEEEVMQRVRVL 291
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +V+VLYVRNL +EE L +AF + G VERVK+ DYAFVH+ R++A+
Sbjct: 285 MQRVRVLYVRNLMLNTSEETLFKAFSHFKPGSVERVKKFTDYAFVHYYCREDALAA 340
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
+VKVL+VRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 198 RVKVLFVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 251
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93
G+ VI+Y S D KNRGF F++Y+SH++A++ K L
Sbjct: 165 GVVDVIVYPSATDKTKNRGFAFVKYESHRAAAMRVKVL 202
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 46 EDRQEAIT--VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED +E ++ V+ + VI+Y + D K NRGF F+E+ H++A++A++ L G +++W
Sbjct: 66 EDVREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGCVRLWDQ 125
Query: 104 DIIVDWADPQEEPDTETMSKVLML 127
+++VDWA+P+ + D E M +V +L
Sbjct: 126 EVMVDWAEPEPDIDDEQMQRVKVL 149
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEA 51
M +VKVLYVRN T + +++ FE +VERVK+I DYAF+HF +R+ A
Sbjct: 143 MQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERVKKIYDYAFIHFYEREHA 195
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
+ G++ + + + +NRGF F+E+ SH+ A+ A ++ ++ D+ VDWA+P
Sbjct: 506 IKGVTTITLMKDTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPL 565
Query: 114 EEPDTETMSKV 124
EP E MSKV
Sbjct: 566 NEPSEEVMSKV 576
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MSKVK +YV NL ++ ++ F ++G +ER+ R D+AFV++ +R A+
Sbjct: 573 MSKVKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAAL 632
>gi|312371188|gb|EFR19435.1| hypothetical protein AND_22427 [Anopheles darlingi]
Length = 471
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 100 VWGCDIIVDWADPQEEPDTETMSKVLML 127
VW CDIIVDWADPQEEPD +TMSKV +L
Sbjct: 252 VWNCDIIVDWADPQEEPDEKTMSKVKVL 279
Score = 42.0 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEA 24
MSKVKVLYVRNLTQ +EEKLK A
Sbjct: 273 MSKVKVLYVRNLTQDTSEEKLKHA 296
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----- 55
MS VK LYV+ ++ TEE++K FE YG VE+VK+I +++FVHF +R A+
Sbjct: 397 MSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKVKKINNFSFVHFVERDSALKAIEAMNG 456
Query: 56 ---GLSQVIIYSSPDDNKKN 72
G +VI S N KN
Sbjct: 457 KNFGNDEVIDVSLAKPNDKN 476
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 49 QEAITVTGLSQVIIYSSPDDN-KKNRGFCFLEYDSHKSASLA---------------KKR 92
+E +T G+S ++ S DN NRGF F+E++SH AS KK
Sbjct: 308 EEELTNNGVSTWVVNQSQKDNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKN 367
Query: 93 LATGRLKVWGCDI-IVDWADPQEEPDTETMSKVLML 127
L L ++G VDWADP+ PD MS V L
Sbjct: 368 LLNRSLALFGRYYQNVDWADPENTPDDNVMSTVKNL 403
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L+V NL T+ +LK FEQ+GRV IK+Y FVH EDR+ A V L+ ++S
Sbjct: 4 LFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHSV 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLAT--------GRLKVWG----CDIIVDWADPQ 113
P + + +RG S L L+T + + +G CDI+ D+A
Sbjct: 64 PINVEHSRG------KPKASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVH 117
Query: 114 EEPDTETMSKVLMLDQ 129
E E + + LD
Sbjct: 118 MERSAEALDAIKNLDN 133
>gi|313227332|emb|CBY22478.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MS VK LYV+ ++ TEE++K FE YG VE+VK+I +++FVHF +R A+
Sbjct: 65 MSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKVKKINNFSFVHFVERDSAL 116
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 64 SSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDI-IVDWADPQEEPDTETMS 122
S D+ NRGF F+E++SH AS KK L L ++G VDWADP+ PD MS
Sbjct: 7 SQKDNGASNRGFAFVEFESHMDASTVKKNLLNRSLALFGRYYQNVDWADPENTPDDNVMS 66
Query: 123 KVLML 127
V L
Sbjct: 67 TVKNL 71
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 14 QYCTEEKLKEAFEQYGRVERVKR--------IKDYAFVHFEDRQ----------EAITVT 55
+Y + K+A E+Y +VE + D F+ D++ + I +
Sbjct: 546 RYSSAADAKKALEKYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIE 605
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT---GRLKVWGCDIIVDWADP 112
+ +VI+ + P + +NRGF F+E ++HK A +A K+L G+L+ +I V WA+P
Sbjct: 606 KIDKVIVMTDPSNVGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQ----NIKVAWAEP 661
Query: 113 QEEPDTETMSKV 124
EPD E + KV
Sbjct: 662 LSEPDEEELLKV 673
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAIT 53
KVK +Y L EEKL+ F ++G +E + R KD+AF++F R+ A+
Sbjct: 672 KVKSVYAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALA 730
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MS+VKV+YVRNL TEE+L++ FE++G + +V + +D+ FVHF DR +A+
Sbjct: 296 MSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQAL 355
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ V + P +NRGF F+EY +H A A++ ++ ++ + WADP+
Sbjct: 231 GIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGTNAPTISWADPRSG 290
Query: 116 PDTETMSKV 124
PD MS+V
Sbjct: 291 PDVSAMSQV 299
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
+++ ++++ D + NRGF F+++ H +A AKK+ G +++W +I + WA+PQ
Sbjct: 214 MTRFVMHNRISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSL 273
Query: 117 DTETMSKVLML 127
D + +V ML
Sbjct: 274 DHSGVDEVKML 284
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
++++++++ D NRGF F+++ H SA AKK+ G L++W DI + WA+PQ
Sbjct: 220 MTRLVMHNRIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRAL 279
Query: 117 DTETMSKV 124
D +V
Sbjct: 280 DHSNADEV 287
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV 100
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++
Sbjct: 105 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
+++ ++++ D + NRGF F+++ H +A AKK+ G +++W +I + WA+PQ
Sbjct: 214 MTRFVMHNRISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSL 273
Query: 117 DTETMSKVLML 127
D + +V ML
Sbjct: 274 DHSGVDEVKML 284
>gi|321464950|gb|EFX75954.1| hypothetical protein DAPPUDRAFT_249502 [Daphnia pulex]
Length = 93
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 39/50 (78%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
SK+KVL V N+++ + E++KE F ++G ++ V++ +DYAFVH+E+R +A
Sbjct: 22 SKIKVLPVGNISKTSSMERIKELFGEHGPIQLVEKFEDYAFVHYENRYDA 71
>gi|321477827|gb|EFX88785.1| hypothetical protein DAPPUDRAFT_311150 [Daphnia pulex]
Length = 100
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 45 FEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
FED+ I S + SS + KNR F F+EY +H++AS +++L R+++WG +
Sbjct: 38 FEDKLNRI----FSTIGTLSSIREKTKNRVFAFVEYVNHRAASKTRRKLIPNRIQLWGTE 93
Query: 105 IIVDWAD 111
I VDW +
Sbjct: 94 IAVDWVE 100
>gi|321458923|gb|EFX69983.1| hypothetical protein DAPPUDRAFT_328599 [Daphnia pulex]
Length = 134
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
S +KV VRNL TEEKL+E FE +G ++RVK ++DYA+ E+R++A+
Sbjct: 50 FSSLKVACVRNLPHDFTEEKLQEVFEVHGPIQRVKILEDYAYKRIENREDAV 101
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 50 EAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109
+ I + + +V + P + ++NRGF FLE +++K A LA K+L + +I V W
Sbjct: 432 QEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAW 491
Query: 110 ADPQEEPDTETMSKV 124
A+P EPD + M KV
Sbjct: 492 AEPLNEPDEDEMLKV 506
Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--------RVKRIKDYAFVHFEDRQEAI 52
M KVK +Y + EEK+++ F+++G +E R + KD+AFV + R+ A+
Sbjct: 503 MLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAAL 562
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S++KV+YVRNL + TEE+L+ FE +G + +V + +D+ FVHF DR +A+
Sbjct: 274 SQIKVVYVRNLPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDAL 332
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ-- 113
G+ V + P + KNRGF F+EY +H A A+K ++ ++ V WADP+
Sbjct: 208 GVEGVELLKDPRNPGKNRGFAFVEYYNHACADHARKLMSRSSFRLGNNVPTVSWADPRTG 267
Query: 114 EEPDTETMSKVL 125
EP + KV+
Sbjct: 268 AEPAATSQIKVV 279
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL-------- 131
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
DN + +G F S SL + T + WGC+
Sbjct: 132 --DNTEFQGELFWGLGGRPSWSLRGRGKNT---RPWGCE 165
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|349802575|gb|AEQ16760.1| putative rna binding motif protein 4b [Pipa carvalhoi]
Length = 100
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
L+V NL+ CT E+L+ FE+YG V +KDYAFVH E EA+
Sbjct: 31 LHVSNLSSECTSEELRAKFEEYGSVLECDIVKDYAFVHMEKSDEAL 76
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDAL 130
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 46
L+V NL T+E+L FE YG+V ++ +AFVH +
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQ 48
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDAL 130
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 46
L+V NL T+E+L FE YG+V ++ +AFVH +
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQ 48
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
I + + +V + P + ++NRGF FLE +++K A LA K+L + +I V WA+
Sbjct: 71 IGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAE 130
Query: 112 PQEEPDTETMSKV 124
P EPD + M KV
Sbjct: 131 PLNEPDEDEMLKV 143
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--------RVKRIKDYAFVHFEDRQEAI 52
M KVK +Y + EEK+++ F+++G +E R + KD+AFV + R+ A+
Sbjct: 140 MLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAAL 199
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 55/171 (32%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQ--------- 49
+++ L + TEE L+E E G + V+ KD +AFV F D++
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDV 166
Query: 50 --------------------------------EAITVT------GLSQVIIYSSPDDNKK 71
E +T T G+ + ++ D +
Sbjct: 167 QDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGPGVINIEMFKDQHDPNR 226
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMS 122
NRGF F+EY +H A A+++L++ KV G + V WA+P+ D + +
Sbjct: 227 NRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEPKGSTDASSAA 277
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK +YV+NL + ++EK+K+ F+++G V ++ +D+ FVHF +R A+
Sbjct: 278 AQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 335
>gi|321455469|gb|EFX66600.1| hypothetical protein DAPPUDRAFT_262824 [Daphnia pulex]
Length = 341
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
KV VRNL EEKL+E FE +G ++RVK ++DYA+ E+R +A+
Sbjct: 55 KVACVRNLPHDFKEEKLQEVFEVHGPIQRVKILEDYAYARIENRDDAV 102
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V NL T+ +LK FEQ+GRV IK+Y FVH +DR+ A V L+Q +++
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDRKAADEAVHNLNQYKLHNV 63
Query: 66 PDDNKKNRGFCFLE---YDSHKSASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDT 118
+ + +RG + S+ S+S L + + +G CDI+ D+A E
Sbjct: 64 AINVEHSRGKPKASTKLHVSNLSSSCTSDEL-RAKFEEYGAVLECDIVKDYAFVHMERSA 122
Query: 119 ETMSKVLMLDQ 129
E + + L+
Sbjct: 123 EALDAIKNLEN 133
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ V + P + +NRGF F+EY +H A ++++++ K+ D IV WADP+
Sbjct: 204 GVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPR 261
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + T+ +LKE FE +G++ +V + Y FVHF DR A+
Sbjct: 270 QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAM 327
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ + + P + +NRGF F+ Y ++ A +++++A+ K+ G V WADP+
Sbjct: 211 PGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKN 270
Query: 115 EPDTETMSKVLML 127
PD S+V L
Sbjct: 271 SPDHSASSQVKAL 283
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAIT- 53
S+VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+
Sbjct: 278 SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKA 337
Query: 54 --------VTG-LSQVIIYSSPDDNKKNRGFCF 77
+ G + +V++ D K + G+ +
Sbjct: 338 VKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAY 370
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 27/122 (22%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE+ ++ E G VE ++ IKD
Sbjct: 188 LFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKD-------------------------- 221
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVL 125
P + +NRGF F+ Y ++ A +++++A+ K+ G V WADP+ PD S+V
Sbjct: 222 PQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVK 281
Query: 126 ML 127
L
Sbjct: 282 AL 283
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAIT- 53
S+VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+
Sbjct: 278 SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKA 337
Query: 54 --------VTG-LSQVIIYSSPDDNKKNRGFCF 77
+ G + +V++ D K + G+ +
Sbjct: 338 VKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAY 370
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ + + P + +NRGF F+ Y ++ A +++++A+ K+ G V WADP+
Sbjct: 211 PGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKN 270
Query: 115 EPDTETMSKVLML 127
PD S+V L
Sbjct: 271 SPDHSASSQVKAL 283
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAIT- 53
S+VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+
Sbjct: 278 SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKA 337
Query: 54 --------VTG-LSQVIIYSSPDDNKKNRGFCF 77
+ G + +V++ D K + G+ +
Sbjct: 338 VKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAY 370
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 17/90 (18%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53
++VK LYV+N+ + T E+LKE F+Q+G V +V +D+AF+H+ +R A+
Sbjct: 277 AQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALK 336
Query: 54 ---------VTGLSQVIIYSSPDDNKKNRG 74
+ G ++ + P +KK+ G
Sbjct: 337 AVKETEKYEIEGQLLEVVLAKPQSDKKSDG 366
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ + + P + +NRGF F+ Y ++ A +++++++ K+ G V WADP+
Sbjct: 210 PGVENIELIKDPQNPNRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVSWADPKS 269
Query: 115 EPDTETMSKVLML 127
PD ++V L
Sbjct: 270 MPDNSAAAQVKAL 282
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V NL T+ +LK FEQ+GRV IK+Y FVH +D++ A V L+ +++
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNHYKLHNV 63
Query: 66 PDDNKKNRGFCFLEYDSHKS--ASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDTE 119
+ + +RG H S +S + + +G CDI+ D+A E E
Sbjct: 64 SINVEHSRGKPNASTKLHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFVHMEISAE 123
Query: 120 TMSKVLMLDQ 129
+ + LD
Sbjct: 124 ALDAIKNLDN 133
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 46 EDRQEAIT--VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G++ V ++ P ++ +NRGF F+EY +H A ++K+++ + K+
Sbjct: 186 EDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNN 245
Query: 104 DIIVDWADPQ 113
V WADP+
Sbjct: 246 ASTVSWADPK 255
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +Y++NL +Y T+++L+E F Q+G++ +V + + FVHF +R A+
Sbjct: 263 SQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAM 321
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 46 EDRQEAIT--VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G++ V ++ P ++ +NRGF F+EY +H A ++K+++ + K+
Sbjct: 215 EDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNN 274
Query: 104 DIIVDWADPQ 113
V WADP+
Sbjct: 275 ASTVSWADPK 284
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +Y++NL +Y T+++L+E F Q+G++ +V + + FVHF +R A+
Sbjct: 292 SQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAM 350
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ D +NRGF F+EY +H A AK++L+ KV G + V WA+P+
Sbjct: 214 PGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE +G V +V +D+ FVHF +R A+
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSAL 341
>gi|431890962|gb|ELK01841.1| Stromal cell-derived factor 2 [Pteropus alecto]
Length = 364
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLA 89
GL VI+Y+ P+D KK R FCFLEY+ HKSA+ A
Sbjct: 72 GLVDVILYNQPNDKKKKRKFCFLEYEDHKSAAQA 105
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ ++GL
Sbjct: 80 LHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGL 131
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL+ T E+++ F QYG++ +K++ FVH + + EA
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEA 48
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L++ F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDAL 130
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 46
L+V NL T+E+L FE YG+V ++ +AFVH +
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQ 48
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L++ F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDAL 130
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 53/169 (31%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA------- 51
+++ L + TEE L+E E G + V+ KD +AFV F D++ A
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDV 166
Query: 52 -----------------------------ITVTGLSQVIIYSSP---------DDNKKNR 73
++ L+ I P D +NR
Sbjct: 167 QDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKGKGPGVINIEMFKHDPNRNR 226
Query: 74 GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMS 122
GF F+EY +H A A+++L++ KV G + V WA+P+ D + +
Sbjct: 227 GFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEPKGSTDASSAA 275
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK +YV+NL + ++EK+K+ F+++G V ++ +D+ FVHF +R A+
Sbjct: 276 AQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 333
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L++ F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDAL 130
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 46
L+V NL T+E+L FE YG+V ++ +AFVH +
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQ 48
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 60/177 (33%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQ--------- 49
++V L + TEE L++ FE+ G V V+ R K YAFV F ++
Sbjct: 23 IFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSEM 82
Query: 50 --------------------------------EAI-------TVTGLSQVIIYSSPDDNK 70
EAI V G+ + + S
Sbjct: 83 KNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHEG 142
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD---IIVDWADPQEEPDTETMSKV 124
++RGF FLE+ H A LA KRL + V+G V +A+P EPD E M++V
Sbjct: 143 RSRGFAFLEFACHADAMLAYKRLQKPDV-VFGHPERTAKVAFAEPIREPDPEIMAQV 198
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V NL T+ +LK FEQ+G+V I +YAFVH ED++ A V L+Q ++
Sbjct: 4 LFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKLHGV 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATG--------RLKVWG----CDIIVDWADPQ 113
+ + +RG S L L+T + + +G CDI+ D+A
Sbjct: 64 SINVEHSRG------KPRASTKLHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFVH 117
Query: 114 EEPDTETMSKVLMLDQ 129
E E + + L+
Sbjct: 118 MEKAEEALEAIRNLNN 133
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ + ++ D +NRGF F+EY +H A A+ +L++ KV G + V WA+P+
Sbjct: 224 PGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEPKG 283
Query: 115 EPDTETMS 122
+ D + +
Sbjct: 284 QTDPSSAA 291
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK +YV+NL + ++EK+K+ F+++G V ++ +D+ FVHF +R A+
Sbjct: 292 AQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 349
>gi|389578479|ref|ZP_10168506.1| RRM domain-containing RNA-binding protein [Desulfobacter
postgatei 2ac9]
gi|389400114|gb|EIM62336.1| RRM domain-containing RNA-binding protein [Desulfobacter
postgatei 2ac9]
Length = 93
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA-ITVTGL 57
+YV NLT+Y TEE LKEAFE +G VE VK IK+ + FV EA + L
Sbjct: 3 IYVGNLTEYMTEEALKEAFEAFGEVESVKIIKNRFNERSKGFGFVEMPSNSEADKAIKAL 62
Query: 58 SQVIIYSSP 66
+ I+ P
Sbjct: 63 NGNIVDKKP 71
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
++V NL Q TEE++K FE+YG V +K++AFVH EDR+ A + L Q ++ +
Sbjct: 4 IFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHGT 63
Query: 66 PDDNKKNRGFCF 77
+ + + G F
Sbjct: 64 AINVEASHGKNF 75
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V N+ + C EE L+ FE+YG V +K++AFVH + EA+
Sbjct: 80 IHVANVEKGCDEE-LRALFEEYGTVSECAVVKNFAFVHMPNYDEAM 124
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ D +NRGF F+EY +H A AK++L+ KV G + V WA+P+
Sbjct: 215 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE +G V +V +D+ FVHF +R A+
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSAL 341
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
LY+ NL Q ++LK F QYG V IK++AFVH +DR+ A + L ++ +
Sbjct: 76 LYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGT 135
Query: 66 PDDNKKNRG 74
P + + +RG
Sbjct: 136 PINVEASRG 144
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N+ + T+++L+ FE YG V IK++AFVH + EA+ + GL
Sbjct: 152 LHVANVEK-GTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGL 202
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAV 125
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDW 109
+ + + + P NRGF F+E+++HK A A +RL V+G D + W
Sbjct: 121 FAIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQAD-AVFGTDRSAKIAW 179
Query: 110 ADPQEEPDTETMSKV 124
A P EPD + MS+V
Sbjct: 180 AQPLNEPDEDIMSQV 194
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MS+VK ++V + E K+KE F +YG VER+ + KD+ FV++ +R A+
Sbjct: 191 MSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVNYVERDAAL 250
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 29 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 86
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ D +NRGF F+EY +H A AK++L+ KV G + V WA+P+
Sbjct: 215 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE +G V +V +D+ FVHF +R A+
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSAL 341
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|149060435|gb|EDM11149.1| rCG52575 [Rattus norvegicus]
Length = 95
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++KVKVL V L TEE L+ F Q+G +E+VK++K YAF HFE + +
Sbjct: 28 IAKVKVLLVGYLANNVTEEILETLFIQFGELEQVKKLKHYAFRHFEAQDSVV 79
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH------ 57
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
K G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 58 ----HKLHGVC-INVEASKNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD 112
Query: 109 WADPQEEPDTETMSKVLMLDQ 129
+A E + + + LD
Sbjct: 113 YAFVHMERAEDAVEAIRGLDN 133
>gi|159164258|pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In
Rna-Binding Protein 30
Length = 90
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 55
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 117 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 168
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 41 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 85
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGE 139
Query: 66 P 66
P
Sbjct: 140 P 140
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L++ F+ +G+V ++K YAFVH E +++A+
Sbjct: 85 VFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMETKEDAL 130
>gi|159164093|pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64
>gi|363746805|ref|XP_003643805.1| PREDICTED: RNA-binding protein 4-like, partial [Gallus gallus]
Length = 123
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH------ 57
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
K G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 58 ----HKLHGVC-INVEASKNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD 112
Query: 109 WA 110
+A
Sbjct: 113 YA 114
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 46
L+V N++ CT +L+ FE+YG V +KDYAFVH E
Sbjct: 80 LHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHME 119
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYGRV IK+Y FVH ED+ A + L ++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH-- 61
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 62 --------GVC-INVEASKNKSKASTKLHVGNISTGCTNLELRFKFEEYGPVLECDIVKD 112
Query: 109 WADPQEEPDTETMSKVLMLDQ 129
+A E + + + LD
Sbjct: 113 YAFVHMERAEDAVEAIRGLDN 133
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 333 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 377
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+
Sbjct: 409 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAV 454
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 49 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 93
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 55/162 (33%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHF---EDRQEAITV- 54
+++ L + TEE L+E + +G + V+ +KD +AFV+F E Q AI
Sbjct: 106 VFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEEL 165
Query: 55 -------------------------------------------TGLSQVIIYSSPDDNKK 71
G+ + ++ D +
Sbjct: 166 HDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGPGVVNIEMFKDLHDPSR 225
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
NRGF F+EY +H A A+++L+ KV G + V WA+P+
Sbjct: 226 NRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPK 267
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE++G V +V +D+ FVHF +R A+
Sbjct: 278 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSAL 334
>gi|198424821|ref|XP_002130575.1| PREDICTED: similar to RNA binding motif protein 28 [Ciona
intestinalis]
Length = 819
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 30/113 (26%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
SK L +RNL+ +CTE++LK F+++G++ VK
Sbjct: 217 SKKSRLIIRNLSFFCTEDELKSEFKRFGKITEVK-------------------------- 250
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
I PD K RGF F+++ A A K + +K G + VDWA P+E
Sbjct: 251 IPVKPDGKK--RGFAFVQFSHVLEAGKAIKEVNMSEIK--GRKVAVDWALPRE 299
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
++V NL + TEE++K FE+YG V IK++AFVH EDR+ A + L Q ++ +
Sbjct: 4 IFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHGT 63
Query: 66 PDDNKKNRGFCF 77
+ + + G F
Sbjct: 64 AINVEASHGKNF 75
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V N+ + C EE L+ FE+YG V +K++AFVH + EA+
Sbjct: 80 IHVANVEKGCDEE-LRALFEEYGTVSECAVVKNFAFVHMPNYDEAM 124
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE++G V +V +D+ FVHF +R A+
Sbjct: 281 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSAL 337
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ D +NRGF F+EY +H A A+++L+ KV G + V WA+P+
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPK 270
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 46 EDRQEAITVTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++A+ TG ++ V + P + +NRGF F+EY +H A ++K +++ K+
Sbjct: 162 EDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSSPEFKLDDN 221
Query: 104 DIIVDWADPQ 113
V WADP+
Sbjct: 222 APTVSWADPK 231
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + +++L++ FE +G+V +V + FVHF +R A+
Sbjct: 239 SQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAM 297
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 8 YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ ++GL
Sbjct: 81 HVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGL 131
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL+ T E+++ F QYG++ +K++ FVH + + EA
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEA 48
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVII 62
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ ++GL
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTF 136
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NL+ T + L+ F ++G V+ +K+Y FVH + ++EA
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEA 48
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVII 62
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ ++GL
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTF 136
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NL+ T + L+ F ++G V+ +K+Y FVH + ++EA
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEA 48
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++A E G VE + IKD
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKD-------------------------- 219
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++++ K+ G V WADP+ PD
Sbjct: 220 PQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAIT--- 53
VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVK 418
Query: 54 ------VTGLSQVIIYSSPDDNKKNRG 74
+ G + ++ + P KK G
Sbjct: 419 ETEKYEIDGQALEVVIAKPQAEKKPDG 445
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 138 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 195
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 88 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSVSTSQV 140
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++A E G VE + IKD
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKD-------------------------- 219
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++++ K+ G V WADP+ PD
Sbjct: 220 PQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAIT- 53
S+VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+
Sbjct: 277 SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKA 336
Query: 54 --------VTGLSQVIIYSSPDDNKKNRG 74
+ G + ++ + P KK G
Sbjct: 337 VKETEKYEIDGQALEVVIAKPQAEKKPDG 365
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 55/162 (33%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR---QEAI--- 52
+++ L + TEE L+E E G + V+ +KD +AFV F + Q AI
Sbjct: 113 VFIGGLPRDTTEEDLRELCEPLGEIHEVRLMKDKDTKENKGFAFVTFTAKDVAQRAIEEL 172
Query: 53 -------------------------TVTGLSQ-----VIIYSSPD-----------DNKK 71
GLS+ +I P D +
Sbjct: 173 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELTSIIKGKGPGVVNIEMFKDLHDPSR 232
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
NRGF F+EY +H A ++++L++ KV G + V WA+P+
Sbjct: 233 NRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAEPK 274
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAITV 54
++VK +YV+NL + ++EK+K+ FE +G V ++ +D+ FVHF +R A+
Sbjct: 288 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 347
Query: 55 TGLSQ 59
S+
Sbjct: 348 VKGSE 352
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK++ FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAA 48
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV---------KRIKDYAFVHFEDRQEAI 52
KVK +YV NL + TE L+ F QYG VERV ++++Y F+++ DR A+
Sbjct: 275 KVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSAL 333
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
V GL ++ + + N+ RGF F+ + + +A+LA ++L+ ++ G + V WADP+
Sbjct: 209 VVGLEKIELMMDKETNQA-RGFGFIAFYNSAAATLALRKLSRPEFRLRGHQVQVMWADPK 267
Query: 114 -EEPDTETMSKV 124
+E TE + +
Sbjct: 268 RDEIGTEKVKSI 279
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL-------- 131
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
DN + F H S ++ R A G GC
Sbjct: 132 --DNTE-----FQGKRMHGQLSPSRLRTAPGMGAQGGC 162
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK++ FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAA 48
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 657 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 714
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 KKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 606 NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSVSTSQV 659
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 27/121 (22%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
LY+ N+ + T+E LKE + YG VT + + +
Sbjct: 363 TLYLGNICKTWTKEALKEKLKHYG------------------------VTNVEDLTLVED 398
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII--VDWADPQEEPDTETMSK 123
+D KNRGF FLE+ S A A KRL R V+G D + V +AD +P E M++
Sbjct: 399 TNDEGKNRGFAFLEFPSRSEAMDAFKRLQR-RDVVFGVDKLAKVSFADSFIDPGDEIMAQ 457
Query: 124 V 124
V
Sbjct: 458 V 458
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH------- 56
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
+ K G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 57 ---HHKLHGVC-INVEASKNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD 112
Query: 109 WADPQEEPDTETMSKVLMLDQ 129
+A E + + + LD
Sbjct: 113 YAFVHMERAEDAVEAIRGLDN 133
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 62/183 (33%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDR---------- 48
++V L + TEE L++ FE+ G V V+ R K YAFV F ++
Sbjct: 28 IFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSEM 87
Query: 49 -------------------------------QEAI-------TVTGLSQVIIYSSPDDNK 70
+EAI V G+ + +
Sbjct: 88 KNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHEG 147
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD---IIVDWADPQEEPDTETMSKV--L 125
++RGF FLE+ H A LA KRL + V+G V +++P EPD E M++V +
Sbjct: 148 RSRGFAFLEFACHTDAMLAYKRLQKPDV-VFGHPERTAKVAFSEPIREPDPEIMAQVKTI 206
Query: 126 MLD 128
LD
Sbjct: 207 FLD 209
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 688 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 745
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 KKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 637 NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 690
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
+VK +YV+NL + ++EK+KE FE++G V +V +D+ FVHF +R A+
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSAL 62
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH------- 56
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
+ K G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 57 ---HHKLHGVC-INVEASKNKSKASTKLHVGNISPACTNMELRAKFEEYGPVIECDIVKD 112
Query: 109 WADPQEEPDTETMSKVLMLDQ 129
+A E + + + LD
Sbjct: 113 YAFVHMERAEDAVEAIRGLDN 133
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|1149523|emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 26 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 70
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV----KRI---KDYAFVHFEDRQEAI 52
S+VK LYV+N+ + T ++LKE F ++G V +V +I +D+ F+HF +R A+
Sbjct: 30 SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSAL 87
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH------- 56
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-----------------VWGCDIIVD 108
+ K G C + ++ K+ S A +L G + V CDI+ D
Sbjct: 57 ---HHKLHGVC-INVEASKNKSKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKD 112
Query: 109 WADPQEEPDTETMSKVLMLDQ 129
+A E + + + LD
Sbjct: 113 YAFVHMERAEDAVEAIRGLDN 133
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ + +NRGF F+EY +H A A+++L++ KV G + V WA+P+
Sbjct: 117 PGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPK 175
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK +YV+NL + ++EK+K+ FE +G V ++ +D+ FVHF +R A+
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 246
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|429327719|gb|AFZ79479.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Babesia equi]
Length = 221
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 30/104 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K L+V N+ TE +L + FE YGR+ R++ +IY
Sbjct: 108 KTLFVSNIAYEVTERQLWKEFEVYGRIRRIR-------------------------MIY- 141
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
D + K RG+ F+E+DS + A KR A GR K+ G ++VD
Sbjct: 142 --DQDNKPRGYAFIEFDSERDMVAAYKR-ADGR-KISGRRVVVD 181
>gi|119594962|gb|EAW74556.1| RNA binding motif protein 4, isoform CRA_c [Homo sapiens]
Length = 79
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRTKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
I + + V + S ++ NRGF FLE ++ + A +A K+L+ G +I V WA+
Sbjct: 113 IGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAE 172
Query: 112 PQEEPDTETM 121
P +PD + M
Sbjct: 173 PLNDPDEKDM 182
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAIT 53
++VK LYV+N+ + T E+LKE F+++G V +V + +D+ F+HF +R A+
Sbjct: 273 AQVKALYVKNIPENTTTEQLKELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALK 332
Query: 54 ---------VTGLSQVIIYSSPDDNKKNRG 74
+ G + + + P +KK G
Sbjct: 333 AVKDTEKHEIDGQALDVSLAKPQSDKKFEG 362
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G + + P + +NRGF F+EY ++ A ++++++ K+ G V WADP+
Sbjct: 207 GAENIELIKDPQNPSRNRGFAFVEYYNNACADYGRQKMSSSNFKLDGNTPTVSWADPKST 266
Query: 116 PDTETMSKVLML 127
D ++V L
Sbjct: 267 SDHSAAAQVKAL 278
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y F H ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAA 48
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPACTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ + ++ + +NRGF F+EY +H A A+++L++ KV G + V WA+P+
Sbjct: 214 PGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPK 272
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK +YV+NL + ++EK+K+ FE +G V ++ +D+ FVHF +R A+
Sbjct: 286 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSAL 343
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVD 108
++ + + ++ + P NRGF F+E+ +HK A A ++L ++G D V
Sbjct: 154 SLCIERIEELTLMEDPQVEGLNRGFAFIEFSTHKDALEAFRKLQQPD-AIFGADRSAKVA 212
Query: 109 WADPQEEPDTETMSKV 124
WA P EPD +TMS+V
Sbjct: 213 WAQPLYEPDEDTMSQV 228
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MS+VK ++V + E ++E F +YG +ER+ + KD+ FV+F +R A+
Sbjct: 225 MSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAAL 284
Query: 53 T 53
Sbjct: 285 A 285
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 291 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 348
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 241 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 293
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDR 48
+VK +YV NL E KLKE FEQ+G V +V K +++ FVHF +R
Sbjct: 253 QVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFSER 306
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 54 VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
V G+ + + S + NRGF F+E+ +H A LAK L+ + G + V +A+P+
Sbjct: 185 VKGVEVIELLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPK 244
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|357421081|ref|YP_004928530.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803591|gb|AER40705.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 89
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LKE FE G V K II+
Sbjct: 6 LYVGNLSYEMTEQELKEHFESIGEVTHAK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
NK+++GF F+E + ++A A ++L + G +IIV A P+ + D
Sbjct: 41 TSNKRSKGFGFIEMSNEENAKKAIEKLNG--TEFMGRNIIVSVARPRAKRD 89
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADA 125
Score = 35.0 bits (79), Expect = 10.0, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----------GLSQVIIYSSP 66
T E+L F YG V +K +AFVH + A+ G + V+ S P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
N F+ S S +RL R +V CD++ D+A E + + + +
Sbjct: 74 --RPLNTWKIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 127 LD 128
L+
Sbjct: 132 LN 133
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 279 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 336
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 281
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 292 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 349
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 242 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 294
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 279 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 336
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 281
>gi|431910218|gb|ELK13291.1| RNA-binding protein 14 [Pteropus alecto]
Length = 664
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|15022507|gb|AAK77961.1|AF315632_1 coactivator activator [Homo sapiens]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|74139976|dbj|BAE31823.1| unnamed protein product [Mus musculus]
Length = 636
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|62460492|ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus]
gi|73621446|sp|Q5EA36.1|RBM14_BOVIN RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|59857831|gb|AAX08750.1| RNA binding motif protein 14 [Bos taurus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|197099062|ref|NP_001125363.1| RNA-binding protein 14 [Pongo abelii]
gi|73621448|sp|Q5RC41.1|RBM14_PONAB RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|55727832|emb|CAH90669.1| hypothetical protein [Pongo abelii]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|5454064|ref|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens]
gi|402892710|ref|XP_003909552.1| PREDICTED: RNA-binding protein 14 [Papio anubis]
gi|426369329|ref|XP_004051645.1| PREDICTED: RNA-binding protein 14 isoform 1 [Gorilla gorilla
gorilla]
gi|73913750|sp|Q96PK6.2|RBM14_HUMAN RecName: Full=RNA-binding protein 14; AltName: Full=Paraspeckle
protein 2; Short=PSP2; AltName: Full=RNA-binding motif
protein 14; AltName: Full=RRM-containing coactivator
activator/modulator; AltName:
Full=Synaptotagmin-interacting protein;
Short=SYT-interacting protein
gi|3746787|gb|AAC64058.1| SYT interacting protein SIP [Homo sapiens]
gi|12653435|gb|AAH00488.1| RBM14 protein [Homo sapiens]
gi|119594958|gb|EAW74552.1| RNA binding motif protein 14, isoform CRA_a [Homo sapiens]
gi|167773197|gb|ABZ92033.1| RNA binding motif protein 14 [synthetic construct]
gi|193785611|dbj|BAG51046.1| unnamed protein product [Homo sapiens]
gi|355566267|gb|EHH22646.1| RNA-binding motif protein 14 [Macaca mulatta]
gi|380783623|gb|AFE63687.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
gi|384944744|gb|AFI35977.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|417403347|gb|JAA48481.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 616
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|403301165|ref|XP_003941269.1| PREDICTED: RNA-binding protein 14 [Saimiri boliviensis boliviensis]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|395851689|ref|XP_003798385.1| PREDICTED: RNA-binding protein 14 [Otolemur garnettii]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|383415143|gb|AFH30785.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|354496138|ref|XP_003510184.1| PREDICTED: RNA-binding protein 14 [Cricetulus griseus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|348565065|ref|XP_003468324.1| PREDICTED: RNA-binding protein 14-like [Cavia porcellus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|346716308|ref|NP_001231150.1| RNA-binding protein 14 [Sus scrofa]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|345783055|ref|XP_852283.2| PREDICTED: RNA-binding protein 14 isoform 1 [Canis lupus
familiaris]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|332249851|ref|XP_003274067.1| PREDICTED: RNA-binding protein 14, partial [Nomascus leucogenys]
Length = 617
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 30 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 74
>gi|296471614|tpg|DAA13729.1| TPA: RNA-binding protein 14 [Bos taurus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|296218875|ref|XP_002807420.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 14 [Callithrix
jacchus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|291385475|ref|XP_002709279.1| PREDICTED: RNA binding motif protein 14 [Oryctolagus cuniculus]
Length = 667
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|301784863|ref|XP_002927842.1| PREDICTED: RNA-binding protein 14-like [Ailuropoda melanoleuca]
gi|281346285|gb|EFB21869.1| hypothetical protein PANDA_017685 [Ailuropoda melanoleuca]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|149061998|gb|EDM12421.1| rCG48334, isoform CRA_f [Rattus norvegicus]
Length = 614
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|148701115|gb|EDL33062.1| mCG8382, isoform CRA_c [Mus musculus]
Length = 614
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|119594959|gb|EAW74553.1| RNA binding motif protein 14, isoform CRA_b [Homo sapiens]
Length = 618
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|350539351|ref|NP_001233311.1| RNA-binding protein 14 [Pan troglodytes]
gi|397517055|ref|XP_003828735.1| PREDICTED: RNA-binding protein 14 isoform 1 [Pan paniscus]
gi|343958970|dbj|BAK63340.1| RNA-binding protein 14 [Pan troglodytes]
gi|410222928|gb|JAA08683.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410256128|gb|JAA16031.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410293820|gb|JAA25510.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410339483|gb|JAA38688.1| RNA binding motif protein 14 [Pan troglodytes]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|404501516|ref|NP_596879.1| RNA-binding protein 14 [Rattus norvegicus]
gi|392338034|ref|XP_003753424.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|392344818|ref|XP_003749082.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|149061997|gb|EDM12420.1| rCG48334, isoform CRA_e [Rattus norvegicus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|62897219|dbj|BAD96550.1| RNA binding motif protein 14 variant [Homo sapiens]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|53547|emb|CAA36322.1| 16 kDA protein [Mus musculus]
Length = 573
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 80 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 124
>gi|16307494|gb|AAH10294.1| Rbm14 protein [Mus musculus]
Length = 618
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|86262142|ref|NP_063922.2| RNA-binding protein 14 [Mus musculus]
gi|73621447|sp|Q8C2Q3.1|RBM14_MOUSE RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|26353152|dbj|BAC40206.1| unnamed protein product [Mus musculus]
gi|74195530|dbj|BAE39579.1| unnamed protein product [Mus musculus]
gi|148701118|gb|EDL33065.1| mCG8382, isoform CRA_e [Mus musculus]
Length = 669
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 91 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 142
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 15 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 59
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 278 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 335
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 228 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSVSTSQV 280
>gi|47210651|emb|CAF94319.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL + +E++K F +YG V IK+YAFVH +DR+ A
Sbjct: 4 IFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAA 48
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 72/189 (38%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQ--- 49
+SK ++V L + EE +K+ FE+ G V V+ + K YAFV F +++
Sbjct: 322 ISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHAS 381
Query: 50 --------------------------------------EAIT-------VTGLSQVIIYS 64
EAI + G+ + +
Sbjct: 382 RALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVP 441
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII---------VDWADPQEE 115
+P +RGF FLE+ H A LA KRL D+I V +A+P E
Sbjct: 442 NPQHEGLSRGFAFLEFSCHADAMLAYKRLQKP-------DVIFGHAERTAKVAFAEPLRE 494
Query: 116 PDTETMSKV 124
PD E M++V
Sbjct: 495 PDPEIMAQV 503
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
M++VK ++V L + E++++E F+ YG +ER+ + KD+ FV F + A+
Sbjct: 500 MAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAAL 559
Query: 53 T 53
+
Sbjct: 560 S 560
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISSACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>gi|12836486|dbj|BAB23678.1| unnamed protein product [Mus musculus]
Length = 669
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +EA ++Q+
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME--KEAYAKAAIAQL 132
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 279 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 336
Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 281
>gi|159164257|pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In
Rna-Binding Protein 14
Length = 90
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 56
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 72/189 (38%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQ--- 49
+SK ++V L + EE +K+ FE+ G V V+ + K YAFV F +++
Sbjct: 322 ISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHAS 381
Query: 50 --------------------------------------EAIT-------VTGLSQVIIYS 64
EAI + G+ + +
Sbjct: 382 RALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVP 441
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII---------VDWADPQEE 115
+P +RGF FLE+ H A LA KRL D+I V +A+P E
Sbjct: 442 NPQHEGLSRGFAFLEFSCHADAMLAYKRLQKP-------DVIFGHAERTAKVAFAEPLRE 494
Query: 116 PDTETMSKV 124
PD E M++V
Sbjct: 495 PDPEIMAQV 503
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
M++VK ++V L + E++++E F+ YG +ER+ + KD+ FV F + A+
Sbjct: 500 MAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAAL 559
Query: 53 T 53
+
Sbjct: 560 S 560
>gi|157108578|ref|XP_001650293.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108879258|gb|EAT43483.1| AAEL005049-PA [Aedes aegypti]
Length = 287
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 56/162 (34%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAF------------VHFE 46
L+V L++ TE+ L+ F QYG +E V R + +AF V FE
Sbjct: 29 LFVGGLSKETTEQDLRNHFGQYGEIESVNVKTDPQTGRSRGFAFIIFNSPESIDKVVAFE 88
Query: 47 D---------------RQEAITVTGLS----------------QVIIYSSPDDNKKN--R 73
D RQ I V GLS V+ P D KN +
Sbjct: 89 DHTVNGKKVDPKKAKARQGKIFVGGLSPETSDEEVKTFFEQFGNVVEMEMPFDKMKNQRK 148
Query: 74 GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GFCF+ YDS ++ + L T + V G ++ V A P+ E
Sbjct: 149 GFCFITYDSE---AVVTELLKTPKQTVGGKEVDVKRATPKPE 187
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKD------YAFVHFEDRQEAI 52
VK ++V NL TE++L++ F +YG VER + R +D Y FVHF +R A+
Sbjct: 180 VKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDGDTHSKYGFVHFRERAAAM 236
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G+ V + P ++ +NRGF F+EY +H A ++K+++ + K+ V WADP+
Sbjct: 216 GVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLDDNAPTVSWADPK 273
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL T+++L++ FE++G+V +V +AFVHF +R A+
Sbjct: 281 SQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSAM 339
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
I + + V + S ++ NRGF FLE ++ + A +A K+L+ G +I V WA+
Sbjct: 339 IGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAE 398
Query: 112 PQEEPDTETM 121
P +PD + M
Sbjct: 399 PLNDPDEKDM 408
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 279 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 336
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V
Sbjct: 229 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQV 281
>gi|351715649|gb|EHB18568.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 197
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE+++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 19 LFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFVHIEDKTAA 63
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 43
L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 95 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFT 131
>gi|156349371|ref|XP_001622030.1| hypothetical protein NEMVEDRAFT_v1g248588 [Nematostella
vectensis]
gi|156208427|gb|EDO29930.1| predicted protein [Nematostella vectensis]
Length = 278
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV NL C + +L+E F +YG V + R+K++AFVH R+ A
Sbjct: 54 LYVGNLPDDCQKHQLQELFAKYGTVSQCDRVKNFAFVHMVGRENA 98
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NLT T ++L+E FE+YG+V +K+Y FVH + EA
Sbjct: 823 IFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEA 867
Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
L+V NL + T + L+ FE++G V +KDYAFVH E ++A+
Sbjct: 899 LHVSNLGEGVTSDVLRARFEEFGPVVECDIVKDYAFVHMERMEDAM 944
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKD-----YAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK+ FE +G + ++ KD Y FVHF+DR A+
Sbjct: 350 SQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFKDRHMAM 407
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
I + + V + S ++ NRGF FLE ++ + A +A K+L+ G +I V WA+
Sbjct: 339 IGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAE 398
Query: 112 PQEEPDTETM 121
P +PD + M
Sbjct: 399 PLNDPDEKDM 408
>gi|87578307|gb|AAI13268.1| RBM14 protein [Bos taurus]
Length = 156
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|340383163|ref|XP_003390087.1| PREDICTED: RNA-binding protein 4-like [Amphimedon queenslandica]
Length = 157
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54
M+ V LYV NL++ T + LKE F +G+V+ V ++ + FVHF +A
Sbjct: 1 MANVTKLYVGNLSETVTSKHLKELFGNFGQVDEVAVLRGFGFVHFRRNSDATAA 54
>gi|311771525|ref|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapiens]
gi|345783057|ref|XP_003432362.1| PREDICTED: RNA-binding protein 14 [Canis lupus familiaris]
gi|397517057|ref|XP_003828736.1| PREDICTED: RNA-binding protein 14 isoform 2 [Pan paniscus]
gi|426369331|ref|XP_004051646.1| PREDICTED: RNA-binding protein 14 isoform 2 [Gorilla gorilla
gorilla]
gi|15022509|gb|AAK77962.1|AF315633_1 coactivator modulator [Homo sapiens]
Length = 156
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 51 AITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVD 108
++++ + ++ + P NRGF F+E+ +HK A A ++L ++G + V
Sbjct: 158 SLSIESIEELTLMEDPQVEGVNRGFAFIEFSTHKDALDAFRKLQQPD-AIFGTERSAKVA 216
Query: 109 WADPQEEPDTETMSKV 124
WA P EPD +TMS+V
Sbjct: 217 WAQPLYEPDEDTMSQV 232
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
MS+VK ++V + E ++E F +YG +ER+ + KD+ FV++ +R A+
Sbjct: 229 MSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAAL 288
Query: 53 T 53
T
Sbjct: 289 T 289
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+VK +YVRNL + TEE+L+E F ++G V +V + +D+ FVH+ D A+
Sbjct: 295 EVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAM 352
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
+++ NL+ T ++L+ F QYG++ +K++ FVH +D+ EA + L Q +
Sbjct: 4 IFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHMDDKTEAEEAIRNLHQYELNGQ 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDTETM 121
P + + +RG H + + + +G CDI+ ++A E + M
Sbjct: 64 PMNVELSRGKSRGSTKLHVGNIACTNQELRAKFEEFGTVLECDIVKNYAFVHMERMEDAM 123
Query: 122 SKVLMLD 128
+ LD
Sbjct: 124 EAINQLD 130
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
LY+ N+ + T+E LKE + YG VT + + +
Sbjct: 313 TLYLGNICKTWTKEALKEKLKHYG------------------------VTNVEDLTLVED 348
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTETMSK 123
+D KNRGF FLE+ S A A KRL R V+G D V +AD +P E M++
Sbjct: 349 TNDEGKNRGFAFLEFPSRSEAMDAFKRLQR-RDVVFGVDKPAKVSFADSFIDPGDEIMAQ 407
Query: 124 V 124
V
Sbjct: 408 V 408
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
G++ V + P + +NRGF F+EY +H A ++K+++ K+ V WADP+
Sbjct: 195 GVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPK 252
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
VK +YV+NL + T++ L++ FE +G+V +V + FVHF +R A+
Sbjct: 266 VKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAM 322
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV FE+ Q A+
Sbjct: 194 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAA 253
Query: 54 VTGL 57
V GL
Sbjct: 254 VIGL 257
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK LY++NL + T+E+LK FE G V +V Y FVHF++R A+
Sbjct: 264 SQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAM 321
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ N+ TE+ KEA E+ G G+ +V + +P
Sbjct: 175 LFIGNIPYKWTEDIFKEAVEEVG-------------------------PGVVKVNLVKAP 209
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
+ N+G+ F+EY + A AKK+++T K+ V WAD + ++ + S+V
Sbjct: 210 RSDT-NKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWADTKNGGESASTSQVKS 268
Query: 127 L 127
L
Sbjct: 269 L 269
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL +E L+E FEQYG+V + I D +TG S
Sbjct: 49 LYVGNLPFRISENDLREIFEQYGQVNEINLIVD-------------KMTGQS-------- 87
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
RGF F+ +S ++A A L V G I+V+ A P+EE
Sbjct: 88 ------RGFAFVTMESSQAAQSAINNLNGS--SVSGRQIVVNEAKPREE 128
>gi|443708578|gb|ELU03655.1| hypothetical protein CAPTEDRAFT_219142 [Capitella teleta]
Length = 774
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----------RIKDYAFVHFEDRQEA 51
SKV + VRNL+ CTE+ L+E F+++G++ VK +K +AFV FE +EA
Sbjct: 146 SKVSRIIVRNLSFKCTEDILREKFQKFGKILEVKIPLKGDKAKNTMKGFAFVQFETVEEA 205
Query: 52 ITVTGLSQVIIYSSP 66
++ I + P
Sbjct: 206 QAALEMNAQQILNRP 220
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ N+ +Y TE +K+ + G G+ V + P
Sbjct: 185 LFIGNVPKYWTEGDMKKVVAEIG-------------------------PGVICVELLKDP 219
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
++ +NRG+ F+EY +H A ++++++ K+ V WADP+
Sbjct: 220 QNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSNAPTVSWADPR 266
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+S VK +YV+NL + T+++LKE FE +G++ +V + + FVHF +R A+
Sbjct: 273 ISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAM 332
>gi|444510190|gb|ELV09525.1| RNA-binding protein 14 [Tupaia chinensis]
Length = 669
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELHSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
+++ NL Q ++LK F QYG V IK++AFVH +DR+ A + L ++ +
Sbjct: 4 IFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGT 63
Query: 66 PDDNKKNRG 74
P + + +RG
Sbjct: 64 PINVEASRG 72
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N+ + T+++L+ FE YG V IK++AFVH + EA+ + GL
Sbjct: 80 LHVANVEK-GTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGL 130
>gi|321458905|gb|EFX69965.1| hypothetical protein DAPPUDRAFT_328608 [Daphnia pulex]
Length = 110
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKDYAFVHFEDRQEAI 52
+ + KV VRNL TEEKL+E FE +G ++R +K ++DYA+V ++R +A+
Sbjct: 24 LEEFKVACVRNLPHDFTEEKLQEVFEVHGPIQRSDMKILEDYAYVRIDNRDDAV 77
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDR 48
S+VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R
Sbjct: 59 SQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKER 112
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV FE+ Q A+
Sbjct: 197 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAA 256
Query: 54 VTGL 57
V GL
Sbjct: 257 VIGL 260
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
+++ NL T ++++ F QYG++ +K++ FVH +D+ EA + L Q +
Sbjct: 4 IFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHMDDKAEADEAIRNLHQYELNGQ 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDTETM 121
P + + +RG H + + + +G CDI+ ++A E + M
Sbjct: 64 PMNVELSRGKSRGSTKLHVGNIACTNQELRAKFEEFGAVLECDIVKNYAFVHMERMEDAM 123
Query: 122 SKVLMLD 128
+ LD
Sbjct: 124 DAINQLD 130
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV FE+ Q A+
Sbjct: 189 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAA 248
Query: 54 VTGL 57
V GL
Sbjct: 249 VIGL 252
>gi|226484798|emb|CAX74308.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
gi|226484800|emb|CAX74309.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 344
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITVTGLSQVI 61
++V +T++ T + L++ F Q+GRV V K + +AFV FED Q A + G QVI
Sbjct: 195 VFVGGITEFITADLLRDHFSQFGRVIDVFIPKPFRSFAFVSFEDPQVATDLLGKDQVI 252
>gi|321469332|gb|EFX80313.1| hypothetical protein DAPPUDRAFT_243777 [Daphnia pulex]
Length = 171
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
KVL +RN+ TE+++K+ F +YG + R K+ ++ AF+ FE++ +A
Sbjct: 84 TKVLCIRNILVNTTEDEMKKVFGEYGPIFRFKKFQNVAFISFEEKADA 131
>gi|387907184|ref|YP_006337520.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
gi|387582077|gb|AFJ90855.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
Length = 90
Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LK+ FE G V VK II+
Sbjct: 6 LYVGNLSYDMTEQELKKYFESVGEVTHVK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
+K+++GF F+E + ++A A ++L L G +IIV A P+ + D
Sbjct: 41 TSSKRSKGFGFIEMSNEENAKQAIEKLNGTEL--MGRNIIVSAARPRAKKD 89
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
LY+ N+ + T+E LKE + YG VT + + +
Sbjct: 296 TLYLGNICKTWTKEALKEKLKHYG------------------------VTNVEDITLVED 331
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTETMSK 123
+D NRGF FLE+ S A A KRL R +G D V +AD +P E MS+
Sbjct: 332 SNDKGTNRGFAFLEFSSRSDAMDAFKRLQK-RDVTFGVDKPAKVSFADSFIDPGDEIMSQ 390
Query: 124 V 124
V
Sbjct: 391 V 391
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++ E G VE ++ IKD
Sbjct: 224 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKD-------------------------- 257
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++ K+ G V WADP+ P+
Sbjct: 258 PTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 309
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR------IKDYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ +D+ FVH+ +R A+
Sbjct: 315 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 371
>gi|444722852|gb|ELW63526.1| RNA-binding protein 4 [Tupaia chinensis]
Length = 131
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDR 48
L++ NL + TE++++ FEQYG+V IK+Y FVH +D+
Sbjct: 4 LFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFVHIKDK 45
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LY+ NL + C + L++ FE YG+V +++Y F+HFE+ EA
Sbjct: 9 LYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEA 53
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++ E G VE ++ IKD
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKD-------------------------- 231
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++ K+ G V WADP+ P+
Sbjct: 232 PTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR------IKDYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ +D+ FVH+ +R A+
Sbjct: 289 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 25/111 (22%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V N+ + TE++ ++ E+ G G+ + + P
Sbjct: 191 LFVGNVPKNWTEDEFRKVVEEVG-------------------------PGVDIIELIRDP 225
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
+ +NRGF F+ Y ++ A +++++ K+ G V WADP+ PD
Sbjct: 226 QNPSRNRGFAFVLYYNNACADYSRQKMLNANFKLEGNTPTVSWADPKGTPD 276
>gi|261749498|ref|YP_003257184.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497591|gb|ACX84041.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 90
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LK+ FE G V K II+
Sbjct: 6 LYVGNLSYEMTEQELKKYFESIGEVTHAK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
NK+++GF F+E + ++A A ++L + G +IIV A P+ + D
Sbjct: 41 TSNKRSKGFGFIEMSNEENAKQAIEKL--NGTEFMGRNIIVSAARPRAKKD 89
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV--WGCDIIVDWADPQ 113
G+ + SPD KNRGF F+EY H A A++ L +K+ + + V+W+DP
Sbjct: 200 GIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDP- 258
Query: 114 EEPDT 118
+P T
Sbjct: 259 -DPTT 262
>gi|76154551|gb|AAX26015.2| SJCHGC08328 protein [Schistosoma japonicum]
Length = 167
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITVTGLSQVI 61
++V +T++ T + L++ F Q+GRV V K + +AFV FED Q A + G QVI
Sbjct: 91 VFVGGITEFITADLLRDHFSQFGRVIDVFIPKPFRSFAFVSFEDPQVATDLLGKDQVI 148
>gi|444335495|ref|YP_007391864.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta orientalis)
str. Tarazona]
gi|444299874|gb|AGD98111.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta orientalis)
str. Tarazona]
Length = 90
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LK FE G V K II+
Sbjct: 6 LYVGNLSYEMTEQELKNYFESIGEVTHAK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
NK+++GF F+E + ++A A ++L + G +IIV A P+ + D
Sbjct: 41 TSNKRSKGFGFIEMSNEENAKQAIEKL--NGTEFMGRNIIVSAARPRAKKD 89
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
VK +YV+NL + T+ +LK FE +G +E+V Y FVHF+DR A+
Sbjct: 337 VKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAM 392
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVL 125
+NRG+ F+EY +H A A++ +++ K+ V WADP+ D+ + S+V+
Sbjct: 284 RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQVV 337
>gi|334347620|ref|XP_001379260.2| PREDICTED: RNA-binding protein 14 [Monodelphis domestica]
Length = 636
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE++G V +KDYAFVH E +A
Sbjct: 42 IFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFVHMEKEADA 86
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDR 48
S+VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R
Sbjct: 31 SQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER 85
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++ E G VE ++ IKD
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKD-------------------------- 231
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++ K+ G V WADP+ P+
Sbjct: 232 PTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR------IKDYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ +D+ FVH+ +R A+
Sbjct: 289 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
>gi|351710883|gb|EHB13802.1| RNA-binding protein 14 [Heterocephalus glaber]
Length = 669
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V +++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGDVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV FE Q A+
Sbjct: 190 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAA 249
Query: 54 VTGL 57
V GL
Sbjct: 250 VIGL 253
>gi|118488224|gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +GR+ K ++ AFV F D+ +AI + V
Sbjct: 17 KVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEFVDQNQAIQM-----V 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S D + RG
Sbjct: 72 SYYASSSDPAQVRG 85
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 58/176 (32%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDR---------- 48
+++ L EE LK AFE+ G V V+ +KD FV F +
Sbjct: 154 IFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSEM 213
Query: 49 -------------------------------QEAIT-------VTGLSQVIIYSSPDDNK 70
+EAIT + G+ + + P
Sbjct: 214 KNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHEG 273
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTETMSKV 124
+RGFCF+++ H A A KRL + + + V +++P +EPD E M+KV
Sbjct: 274 LSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKV 329
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAI 52
M+KVK +++ L Y E+++++ F+ YG +ERV + KD+ FV F + AI
Sbjct: 326 MAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAI 385
>gi|301616205|ref|XP_002937556.1| PREDICTED: hypothetical protein LOC100490607 [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
++V ++ + ++LK+ FE+YG+V +K+YAFVH E Q+A ++ L + Y S
Sbjct: 4 IFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFYGS 63
Query: 66 ------PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119
+N ++ S ++ + K L KV CDI+ ++A + E
Sbjct: 64 HLTVEYATSKIRNATKIYVGNVSSRATTSQVKELFEKFGKVVECDIVKNYAFVHMAKERE 123
Query: 120 TMSKVLMLD 128
M +L L+
Sbjct: 124 AMDAILHLN 132
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV--WGCDIIVDWADP 112
G+ + SPD KNRGF F+EY H A A++ L +K+ + + V+W+DP
Sbjct: 200 GIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDP 258
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK LYV+NL + T+E+LK+ FE G V +V Y FVHF++R A+
Sbjct: 263 AQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAM 320
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++ E G VE ++ IKD
Sbjct: 197 LFIGNIPKNWTEDEFRKVIENVGPGVENIELIKD-------------------------- 230
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++ K+ G V WADP+ P+
Sbjct: 231 PANTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 282
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR------IKDYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ +D+ FVH+ +R A+
Sbjct: 288 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 344
>gi|302789199|ref|XP_002976368.1| hypothetical protein SELMODRAFT_104811 [Selaginella
moellendorffii]
gi|302811042|ref|XP_002987211.1| hypothetical protein SELMODRAFT_125500 [Selaginella
moellendorffii]
gi|300145108|gb|EFJ11787.1| hypothetical protein SELMODRAFT_125500 [Selaginella
moellendorffii]
gi|300155998|gb|EFJ22628.1| hypothetical protein SELMODRAFT_104811 [Selaginella
moellendorffii]
Length = 440
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AFV F D +AI + V
Sbjct: 18 KVLHIRNLPWECTEEELIELCKMFGKVVNTKCNVGTNRNQAFVEFADLNQAI-----AMV 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SFYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV FE Q A+
Sbjct: 193 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAA 252
Query: 54 VTGL 57
V GL
Sbjct: 253 VIGL 256
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 29/111 (26%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVII 62
K K L++ L+ Y +E+ L+ AFE +G++ VK I D
Sbjct: 304 KTKKLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKI--------------------- 342
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
+K+++G+ F+EY + ++AS A K + + W I+VD A P
Sbjct: 343 ------SKRSKGYAFVEYTTEEAASAALKEMNGKIINGW--MIVVDIAKPS 385
>gi|453085721|gb|EMF13764.1| translation initiation factor 3, RNA-binding subunit
[Mycosphaerella populorum SO2202]
Length = 295
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N++++ E L+E FE+YGRV RV R K +AFV + DR +A
Sbjct: 213 LATLRVTNVSEFAEEGDLREMFERYGRVTRVFLAKDRETGRAKGFAFVSYADRSDA 268
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ FE++G++ +V + FVHF +R A+
Sbjct: 291 SQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAM 349
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 54 VTGLSQVIIYSSPDDNKK---NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
V L +++ P D K NRGF F++Y +H A +++++ + K+ V WA
Sbjct: 221 VEDLKKIVTEIGPGDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWA 280
Query: 111 DPQ 113
DP+
Sbjct: 281 DPK 283
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ FE++G++ +V + FVHF +R A+
Sbjct: 299 SQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAM 357
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 46 EDRQEAITVTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G ++ V + + NRGF F++Y +H A +++++ + K+
Sbjct: 222 EDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGEN 281
Query: 104 DIIVDWADPQ 113
V WADP+
Sbjct: 282 APTVSWADPK 291
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 29/111 (26%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVII 62
K K L++ L+ Y +E+ L+ AFE +G++ VK I D
Sbjct: 304 KTKKLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKI--------------------- 342
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
+K+++G+ F+EY + ++AS A K + + W I+VD A P
Sbjct: 343 ------SKRSKGYAFVEYTTEEAASAALKEMNGKIINGW--MIVVDIAKPS 385
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK LYV+NL + T+++LK+ FE++G++ +V + FVHF +R A+
Sbjct: 279 SQVKALYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAM 337
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NLT T ++L+E FE+YG+V +K+Y FVH + EA
Sbjct: 4 IFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEA 48
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
L+V NL + T + L+ F+++G V +KDYAFVH E ++A+
Sbjct: 80 LHVSNLGEGVTSDVLRARFQEFGPVVECDIVKDYAFVHMERMEDAM 125
>gi|312088239|ref|XP_003145783.1| hypothetical protein LOAG_10208 [Loa loa]
Length = 353
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 30/105 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K L+V + +E KL+ FEQ+G++ R+ A VH
Sbjct: 144 KTLFVARINYETSESKLRREFEQFGKITRL------ALVH-------------------- 177
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109
D N K RG+ F+EY +S S A K+ A G +K+ G ++VD+
Sbjct: 178 --DKNGKPRGYAFIEYQHKESMSEAYKK-ADG-MKIDGRRVVVDY 218
>gi|351704764|gb|EHB07683.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 143
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 37/126 (29%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ NL + TE++++ FEQYG+V+ IK+Y FV ED+ ++P
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVQECDIIKNYGFVLIEDK---------------TAP 48
Query: 67 DDNKKNRGF-----CFLEYDSHKSASLAKKRLATGRL-------KVWG----------CD 104
+D N + ++ K+ S A +L G + ++W CD
Sbjct: 49 EDAIHNLHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNEELWAKLEEYGPVIECD 108
Query: 105 IIVDWA 110
I+ D+A
Sbjct: 109 IVKDYA 114
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT E+L E+YG V +KDYAFV+ E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNEELWAKLEEYGPVIECDIVKDYAFVYMERAEDAVEAIRGL 131
>gi|327270493|ref|XP_003220024.1| PREDICTED: dead end protein homolog 1-like [Anolis carolinensis]
Length = 339
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112
TG+ + I+ SP KK R ++Y SH++A++AKK L G L + G I VDW P
Sbjct: 155 TGVISITIHPSP--FKKQRQLAVVKYISHQAAAIAKKALVEGTLCLCGDQIEVDWLTP 210
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR------IKDYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ +D+ FVH+ +R A+
Sbjct: 261 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 317
Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
P + +NRGF F+ Y ++ A +++++ K+ G V WADP+ P+
Sbjct: 204 PTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 255
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+YV NL T+E+L+ AFE +G+V VK ++D
Sbjct: 3 IYVGNLAYNATDEELRSAFEAFGQVTSVKIVRDR-------------------------- 36
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
D ++RGF F+E + + A A + LK G +++V+ A P+E+
Sbjct: 37 -DTGRSRGFAFVEMEDGEGAQNAVAEMNGKDLK--GRNLVVNEARPREQ 82
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ C ++++ FE+YGRV +KDYAFVH EA
Sbjct: 146 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEA 190
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------VTGL 57
++V N+ + +E ++ FE+YG V ++ YAFVH +EA + G
Sbjct: 70 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNGK 129
Query: 58 SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
++ S P + F S ++A + K GR V CDI+ D+A +
Sbjct: 130 KMLVELSKPRPQNTWKIFVGNVSSSCEAAEIRKIFEEYGR--VLECDIVKDYAFVHMTRE 187
Query: 118 TETMSKVLMLD 128
+E + + L+
Sbjct: 188 SEARAAIEALN 198
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 26/28 (92%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRL 98
KNRGF F+EY++HK+A++A+++L +GR+
Sbjct: 179 KNRGFAFVEYETHKAAAMARRKLVSGRV 206
>gi|115476578|ref|NP_001061885.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|42407521|dbj|BAD10638.1| putative polypyrimidine tract-binding protein homolog [Oryza
sativa Japonica Group]
gi|113623854|dbj|BAF23799.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|215695278|dbj|BAG90469.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640621|gb|EEE68753.1| hypothetical protein OsJ_27445 [Oryza sativa Japonica Group]
Length = 461
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L E + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|413922344|gb|AFW62276.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 458
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L E + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|413922343|gb|AFW62275.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 462
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L E + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|242079253|ref|XP_002444395.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
gi|241940745|gb|EES13890.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
Length = 462
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L E + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|218201199|gb|EEC83626.1| hypothetical protein OsI_29352 [Oryza sativa Indica Group]
Length = 461
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L E + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|426368243|ref|XP_004051120.1| PREDICTED: CUGBP Elav-like family member 1 [Gorilla gorilla
gorilla]
Length = 551
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA----------FVHFEDRQEAITVTG 56
++V + + +E+ L+E FEQYG V + ++D + FV F R+ A+
Sbjct: 128 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 187
Query: 57 LSQVI---------IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--I 105
+ I P D++KN G F+ + + A A K + + + GC +
Sbjct: 188 ALHNMKVLPGMHHPIQMKPADSEKNNGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPM 246
Query: 106 IVDWADPQEEPDTETMS 122
+V +AD Q++ + + M+
Sbjct: 247 VVKFADTQKDKEQKRMA 263
>gi|60459259|gb|AAX20016.1| FCA gamma [Pisum sativum]
Length = 743
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 31/121 (25%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V +L + ++++E F +YGRVE V Y
Sbjct: 184 LFVGSLNKQALVKEVEEVFSKYGRVEDV----------------------------YLMR 215
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTETMSKV 124
DD K++RG F++Y SH+ +LA G + GCD +IV +ADP+ ++ V
Sbjct: 216 DDKKQSRGCGFVKY-SHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPV 274
Query: 125 L 125
L
Sbjct: 275 L 275
>gi|325189852|emb|CCA24334.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 938
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK----DYAFVHFEDRQEAITVTGLSQVII 62
L VRNL+ T+E L F +G V ++ A +D++ ++++ G S
Sbjct: 270 LIVRNLSFQATDEDLHRVFSPFGAVSEAHVVRLPVDTIAVSDNDDKEGSVSILGRS---- 325
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
RGF F++++ ++A+ A K + +LK G +I+VD+A P+
Sbjct: 326 ----------RGFGFVQFNEIEAAASAVKAINGNKLK--GREIVVDFAVPK 364
>gi|399218189|emb|CCF75076.1| unnamed protein product [Babesia microti strain RI]
Length = 331
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K L++ NL TE +L+ FE YG+++R++ I
Sbjct: 98 KTLFIGNLAYEATERQLRSEFEAYGKIKRIRIIA-------------------------- 131
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
D N RG+ F+E+D+ + A KR GR K+ G +IVD
Sbjct: 132 --DANGNPRGYAFIEFDTEREMVNAYKR-GDGR-KIAGRRVIVD 171
>gi|84994904|ref|XP_952174.1| U1 small nuclear ribonucleoprotein 70 kDa [Theileria annulata
strain Ankara]
gi|65302335|emb|CAI74442.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Theileria
annulata]
Length = 227
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 30/104 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ L+V N+ TE++L + F+ YG++ RV+ I D +
Sbjct: 107 RTLFVANIAYDVTEKQLSKEFQTYGKIRRVRMIHDRS----------------------- 143
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
K RG+ F+EY+S + A KR A GR K+ G +IVD
Sbjct: 144 -----NKPRGYAFIEYESERDMVTAYKR-ADGR-KISGRRVIVD 180
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDR 48
S+VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R
Sbjct: 281 SQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKER 334
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAI-TVTGLS-- 58
+YV L+ + E LK+ FE G V V+ K YAF++F ++ A+ + LS
Sbjct: 115 VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNK 174
Query: 59 -----QVIIYSS----------------PDDNK----------------------KNRGF 75
++ + SS PDD K +N+G+
Sbjct: 175 DLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGY 234
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WAD + + + S+V
Sbjct: 235 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQV 283
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDR 48
S+VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R
Sbjct: 271 SQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKER 324
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAI-TVTGLS-- 58
+YV L+ + E LK+ FE G V V+ K YAF++F ++ A+ + LS
Sbjct: 105 VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNK 164
Query: 59 -----QVIIYSS----------------PDDNK----------------------KNRGF 75
++ + SS PDD K +N+G+
Sbjct: 165 DLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGY 224
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WAD + + + S+V
Sbjct: 225 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQV 273
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV +E+ Q A+
Sbjct: 200 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAA 259
Query: 54 VTGL 57
V GL
Sbjct: 260 VIGL 263
>gi|262340986|ref|YP_003283841.1| RNA-binding protein [Blattabacterium sp. (Blattella germanica) str.
Bge]
gi|262272323|gb|ACY40231.1| putative RNA-binding protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 90
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LK+ FE G V K II+
Sbjct: 6 LYVGNLSYDMTEQELKKYFESIGEVTHAK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
NK+++GF F+E + ++A A ++L + G +IIV A P+ D
Sbjct: 41 TSNKRSKGFGFIEMSNEENAKQAIEKLNG--TEFMGRNIIVSAARPRTRKD 89
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGLSQVIIYSS 65
+++ NL T E+L+ F QYG++ +K++ FVH + + EA + L Q + +
Sbjct: 4 IFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQYELNAQ 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDTETM 121
P + + +RG H + + + +G CDI+ ++A E + M
Sbjct: 64 PMNVELSRGKSRGSTKLHVGNIACTNQELRAKFEEFGAVLECDIVKNYAFVHMERMEDAM 123
Query: 122 SKVLMLD 128
+ LD
Sbjct: 124 EAINKLD 130
>gi|351715343|gb|EHB18262.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 208
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ E+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKREEYGPVIECDIVKDYAFVHMEPAEDAVEAIRGL 131
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA------ITVTGLSQV 60
L++ NL Q TE++++ EQ G+V IK+YAF+H ED A + L V
Sbjct: 4 LFIGNLPQEATEQEIRSRSEQCGQVRECDIIKNYAFLHAEDETAAEDAKHNLHHYKLHGV 63
Query: 61 IIYSSPDDNKKNRGFCFLE-YDSHKSASLAKKRLATGRLK---VWGCDIIVDWADPQEEP 116
I + KN+G + + + S + K L R + V CDI+ D+A EP
Sbjct: 64 NINV---EASKNKGKASTKLHVGNISPTCTNKELRAKREEYGPVIECDIVKDYAFVHMEP 120
Query: 117 DTETMSKVLMLDQ 129
+ + + LD
Sbjct: 121 AEDAVEAIRGLDN 133
>gi|405952772|gb|EKC20544.1| Protein couch potato [Crassostrea gigas]
Length = 318
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV----KRIKDYAFVHFEDRQEAITVTGL 57
S L+V NL Q+ +E++LK+ F + R+ K AFV F+D ++A G
Sbjct: 214 SPCSTLFVANLGQFSSEQELKDLFNSFQGFSRLRMHNKGGSPVAFVEFQDVRQAAEAMGR 273
Query: 58 SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
Q + S D RG +EY +K + KK +G V I
Sbjct: 274 LQGFVLLSSD-----RGGIRIEYAKNKMGEVGKKEETSGLSPVSTTTIF 317
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ FE++G++ +V + FVHF +R A+
Sbjct: 295 SQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAM 353
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 46 EDRQEAITVTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G ++ V + + NRGF F++Y +H A +++++ + K+
Sbjct: 218 EDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGEN 277
Query: 104 DIIVDWADPQ 113
V WADP+
Sbjct: 278 APTVSWADPK 287
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK FE++G + +V Y FVHF+DR A+
Sbjct: 287 SQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNRYGFVHFKDRSMAM 344
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A+++++T K+ V WADP+ D+ + S+V
Sbjct: 237 RNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNN-DSASTSQV 289
>gi|241701254|ref|XP_002411916.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
gi|215504865|gb|EEC14359.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
Length = 81
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+V+ +K+YAFVH + EA
Sbjct: 6 LYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEA 50
>gi|410974606|ref|XP_003993734.1| PREDICTED: RNA-binding protein 14 isoform 1 [Felis catus]
Length = 669
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ F+Q G+V I DYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFVHMEKEADA 125
>gi|410974608|ref|XP_003993735.1| PREDICTED: RNA-binding protein 14 isoform 2 [Felis catus]
Length = 156
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ F+Q G+V I DYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFDQRGKVYVCTLISDYAFVHMEKEADA 125
>gi|317152646|ref|YP_004120694.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942897|gb|ADU61948.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY 40
K LYV NL CTEE+L+ AFE YG V VK + D+
Sbjct: 2 AKNLYVGNLPWNCTEEELRAAFEAYGEVRSVKLVNDH 38
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ C ++++ FE+YGRV +KDYAFVH EA
Sbjct: 86 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEA 130
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------VTGL 57
++V N+ + +E ++ FE+YG V ++ YAFVH +EA + G
Sbjct: 10 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNGK 69
Query: 58 SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
++ S P + F S ++A + K GR V CDI+ D+A +
Sbjct: 70 KMLVELSKPRPQNTWKIFVGNVSSSCEAAEIRKIFEEYGR--VLECDIVKDYAFVHMTRE 127
Query: 118 TETMSKVLMLD 128
+E + + L+
Sbjct: 128 SEARAAIEALN 138
>gi|218847772|ref|NP_001136383.1| small nuclear ribonucleoprotein 35kDa (U11/U12) [Xenopus
(Silurana) tropicalis]
gi|195539787|gb|AAI67878.1| Unknown (protein for MGC:135224) [Xenopus (Silurana) tropicalis]
Length = 264
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 27/75 (36%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
LYV L+Q TEEKLKE F +YG ++R++ ++D+ +TG S+
Sbjct: 52 TLYVARLSQQTTEEKLKEVFSRYGDIKRIRLVRDF-------------ITGFSK------ 92
Query: 66 PDDNKKNRGFCFLEY 80
G+ F+EY
Sbjct: 93 --------GYAFIEY 99
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NL T E+L+E FE+YG+V +K+Y FVH + EA
Sbjct: 4 IFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEA 48
>gi|374290274|ref|YP_005037327.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377066|gb|AEU09254.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 89
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 27/107 (25%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ TE++LKE FE G V K II+
Sbjct: 6 LYVGNLSYDMTEQELKEYFESIGEVINAK-------------------------IIFDES 40
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
NK+++GF F+E + ++A A ++L + G +IIV A P+
Sbjct: 41 TSNKRSKGFGFIEMSNEENAKQAIEKLNG--TEFMGRNIIVSVARPR 85
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV +E+ Q A+
Sbjct: 200 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAA 259
Query: 54 VTGL 57
V GL
Sbjct: 260 VIGL 263
>gi|67539694|ref|XP_663621.1| hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
gi|40738468|gb|EAA57658.1| hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
Length = 785
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N+++ E++L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 707 LRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 759
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+++LK+ FE++G++ +V + FVHF +R A+
Sbjct: 211 SQVKAIYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAM 269
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G + V + + + NRG+ F+EY ++ A +++++ + K+ V WADP+
Sbjct: 146 GTTNVQLVKVSESSSNNRGYAFVEYYNNACAEYSRQKMIDPKFKLGDNAPSVSWADPK-N 204
Query: 116 PDTETMSKV 124
D+ T S+V
Sbjct: 205 ADSSTSSQV 213
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ F+ +G++ +V + FVHF +R A+
Sbjct: 610 SQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAM 668
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 46 EDRQEAIT--VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G++ V + + NRGF F++Y +H A +++++ + K+
Sbjct: 533 EDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDN 592
Query: 104 DIIVDWADPQEEPDTETMSKV 124
V WADP+ D+ S+V
Sbjct: 593 APTVSWADPKNA-DSSAASQV 612
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NL+Q +++++ F QYG V + K+YAFVH EDR+ A
Sbjct: 4 IFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSA 48
>gi|224130604|ref|XP_002320882.1| predicted protein [Populus trichocarpa]
gi|222861655|gb|EEE99197.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE-DRQEAITVTGLSQV 60
+ ++V N Q + +L+ F +YGRVERV +AFV+FE DR A + GL +
Sbjct: 1 RPIFVGNFEQETRQSELERLFRKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDNI 57
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL++ TE+ L+E FE YGR+ K R + + FV +E+ Q A+
Sbjct: 200 THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAA 259
Query: 54 VTGL 57
V GL
Sbjct: 260 VIGL 263
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R A+
Sbjct: 272 AQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVHFKERYMAM 329
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAI-TVTGLS-- 58
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ + LS
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 165
Query: 59 ----------------QVIIYSSP-----DDNK----------------------KNRGF 75
++ I + P DD K +N+G+
Sbjct: 166 DLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGLDRNKGY 225
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WADP+ + + ++V
Sbjct: 226 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNANEATSTAQV 274
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R A+
Sbjct: 272 AQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVHFKERYMAM 329
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAI-TVTGLS-- 58
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ + LS
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 165
Query: 59 ----------------QVIIYSSP-----DDNK----------------------KNRGF 75
++ I + P DD K +N+G+
Sbjct: 166 DLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGLDRNKGY 225
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WADP+ + + ++V
Sbjct: 226 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNANEATSTAQV 274
>gi|148909314|gb|ABR17756.1| unknown [Picea sitchensis]
Length = 344
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
M +VK ++V L EEK+KE F ++G +ERV + KD+ FV++ R+ AI
Sbjct: 44 MEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFGFVNYTTREAAI 103
Query: 53 T 53
Sbjct: 104 A 104
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ F+ +G++ +V + FVHF +R A+
Sbjct: 566 SQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAM 624
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 46 EDRQEAIT--VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G++ V + + NRGF F++Y +H A +++++ + K+
Sbjct: 489 EDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDN 548
Query: 104 DIIVDWADPQEEPDTETMSKV 124
V WADP+ D+ S+V
Sbjct: 549 APTVSWADPKNA-DSSAASQV 568
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 29/107 (27%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIY 63
K LYV NL + T+ L+E F G+V +K IKD +TGLS
Sbjct: 21 AKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKD-------------KLTGLSA---- 63
Query: 64 SSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
G+ F+++ H++A +A + L GR+ + G ++ V+WA
Sbjct: 64 ----------GYGFVQFLDHRAADMALQSL-NGRV-LHGQELRVNWA 98
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL + +E++K F +YG V IK+YAFVH +DR+ A
Sbjct: 4 IFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAA 48
>gi|345568773|gb|EGX51665.1| hypothetical protein AOL_s00054g64 [Arthrobotrys oligospora ATCC
24927]
Length = 284
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V NL+++ E+ L++ FE++GRV RV R K +AFV ++DR +A
Sbjct: 203 LATLRVTNLSEFAEEQDLRDMFERFGRVTRVFLAKDRDTGRAKGFAFVSYQDRLDA 258
>gi|221122094|ref|XP_002156057.1| PREDICTED: uncharacterized protein LOC100210881 [Hydra
magnipapillata]
Length = 276
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHF---EDRQEAI 52
+YV NL C + L+ F YG V + IK++AFVHF ED A+
Sbjct: 5 VYVGNLPDNCNPDNLRGLFGPYGEVNELTVIKNFAFVHFAREEDANNAV 53
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQ 113
G+ + + P +RGFCF+++ H A A KRL + + + V +++P
Sbjct: 259 GVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPL 318
Query: 114 EEPDTETMSKV 124
+EPD E M+KV
Sbjct: 319 QEPDPEIMAKV 329
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAI 52
M+KVK +++ L Y E+++++ F+ YG ++RV + KD+ FV F + AI
Sbjct: 326 MAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAI 385
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK LYV+NL + T+E+LK+ FE G + +V Y FVHF++R A+
Sbjct: 271 AQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVHFKERYMAM 328
Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAI-TVTGLS-- 58
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ + LS
Sbjct: 105 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 164
Query: 59 ----------------QVIIYSSP-----DDNK----------------------KNRGF 75
++ I + P DD K +N+G+
Sbjct: 165 DLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEEVGPGVLKVELMKAPGLDRNKGY 224
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WADP+ + + ++V
Sbjct: 225 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNANEATSTAQV 273
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+++LK+ FE +G++ +V + FVHF +R A+
Sbjct: 226 SQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAM 284
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 46 EDRQEAITVTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G ++ V + ++ NRGF F++Y +H A +++++ + K+
Sbjct: 149 EDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNN 208
Query: 104 DIIVDWADPQEEPDTETMSKV 124
V WADP+ D+ S+V
Sbjct: 209 APTVSWADPK-NADSSPASQV 228
>gi|222824844|emb|CAM12246.2| RNA binding protein 4 [Danio rerio]
Length = 99
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL+ T E+++ F QYG++ +K++ FVH + + EA
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEA 48
>gi|323449244|gb|EGB05134.1| hypothetical protein AURANDRAFT_1296 [Aureococcus anophagefferens]
Length = 464
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 31/111 (27%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
SK K L VRNL +K+ FE +G +++V+ K +
Sbjct: 380 SKTK-LVVRNLAFAVVVNDVKQLFEAFGALKKVRLPKRF--------------------- 417
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112
+ ++RGF F+E+ + + A+ A+ L + L +G +++DWADP
Sbjct: 418 -------DGRHRGFAFVEFTNPRDAAAARSSLKSAHL--YGRHLVIDWADP 459
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+ +LK+ FE +G + +V Y FVHF+DR A+
Sbjct: 259 SQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNRYGFVHFKDRSMAM 316
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
+NRG+ F+EY +H A A+++++T K+ V WADP+ D+ + S+V
Sbjct: 209 RNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKNN-DSASTSQV 261
>gi|351706306|gb|EHB09225.1| RNA-binding protein 4B [Heterocephalus glaber]
Length = 333
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL +E+++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPWEASEQEICSLFEQYGKVLESGIIKNYGFVHIEDKTAA 48
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV N+ Q ++ L++ FE++G+V IK+Y FVH ++ Q+A
Sbjct: 23 LYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDA 67
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
+++ NL T ++++ F QYG++ +K++ FVH +D+ EA + L Q +
Sbjct: 4 IFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHMDDKAEADEAIRNLHQYELNGQ 63
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG----CDIIVDWADPQEEPDTETM 121
P + + +RG H + + + +G CDI+ ++A E + M
Sbjct: 64 PMNVELSRGKSRGSTKLHVGNIACTNQELRAKFEEFGAVVECDIVKNYAFVHMERMEDAM 123
Query: 122 SKVLMLDQ 129
+ LD
Sbjct: 124 DAINQLDN 131
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI-T 53
+ K LYV+NL + TE+ L+E FE YGR+ K R + + FV +E+ Q A+
Sbjct: 200 THFKNLYVKNLGEEFTEQHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAA 259
Query: 54 VTGL 57
V GL
Sbjct: 260 VIGL 263
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAI 52
++VK LYV+N+ + T+E+LK+ FE G + +V Y FVHF++R A+
Sbjct: 272 AQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMAM 329
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 51/169 (30%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITVTGL---- 57
+YV L+ + E LK FE G V V+ K YAF++F ++ A+
Sbjct: 106 VYVGGLSSDVSSEDLKRLFESVGEVVEVRMRGKGDNKAYAFINFRTKEMALKAIRKLCNK 165
Query: 58 ----SQVIIYSS----------------PDDNK----------------------KNRGF 75
++ + SS PDD K +N+G+
Sbjct: 166 DLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAVEEVGPGVLQVDLMKAPGSGRNKGY 225
Query: 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
F+EY + A AK++++T K+ V WADP+ + + ++V
Sbjct: 226 GFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNANEATSTAQV 274
>gi|298707737|emb|CBJ26054.1| poly(A) binding protein, cytoplasmic 4-like [Ectocarpus
siliculosus]
Length = 648
Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 29/104 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V +L + TEEKL++AFEQ+GRV V +D A TG
Sbjct: 207 LFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRA-------------TG---------- 243
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
KN G+ F++ SH+ A AK+ A +++ G + V WA
Sbjct: 244 ----KNLGYGFVKLSSHQEARAAKE--AMQGVELGGRRVRVGWA 281
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ C ++++ FE+YGRV +KDYAFVH EA
Sbjct: 79 IFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEA 123
Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------VTGL 57
++V N+ T+E++ E FE+YG V +K YAFVH +EA + G
Sbjct: 3 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNGK 62
Query: 58 SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
++ S P + F S + + + K GR V CDI+ D+A +
Sbjct: 63 KMLVELSKPRPQNTWKIFVGNVSSSCEGSEIRKIFEEYGR--VVECDIVKDYAFVHMTRE 120
Query: 118 TETMSKVLMLD 128
+E + + L+
Sbjct: 121 SEARAAIEALN 131
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ C ++++ FE+YGRV +KDYAFVH EA
Sbjct: 86 IFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEA 130
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------VTGL 57
++V N+ T+E++ E FE+YG V +K YAFVH +EA + G
Sbjct: 10 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNGK 69
Query: 58 SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
++ S P + F S + + + K GR V CDI+ D+A +
Sbjct: 70 KMLVELSKPRPQNTWKIFVGNVSSSCEGSEIRKIFEEYGR--VVECDIVKDYAFVHMTRE 127
Query: 118 TETMSKVLMLD 128
+E + + L+
Sbjct: 128 SEARAAIEALN 138
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITVTGLSQVIIY 63
+Y NL Q TEE L++ F YG+++ ++ KD YAF+ F ++ A +Q I+
Sbjct: 192 TVYCGNLAQGSTEEALQKIFGPYGQIQEIRVFKDKGYAFIRFASKESA------TQAIVS 245
Query: 64 SSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98
D C + + S +L TG L
Sbjct: 246 VHNTDLNGQNVKCSWGKEPGEPGSANNAQLMTGGL 280
>gi|452822290|gb|EME29311.1| splicing factor, arginine/serine-rich 7 [Galdieria sulphuraria]
Length = 258
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+ LYV N++++ T L++ F +YGRV V+ + DYAFV D ++A
Sbjct: 3 TRKLYVGNVSRHATRRDLEDLFSKYGRVRDVRLLSDYAFVEMGDERDA 50
>gi|71033823|ref|XP_766553.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353510|gb|EAN34270.1| RNA-binding protein, putative [Theileria parva]
Length = 195
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEA 51
+K V+YV NL + TEE+LK F Q+G V +++ R + YAFV FED + A
Sbjct: 10 NKNNVIYVGNLPKQLTEEQLKTYFNQFGDVIKIRLFKSRKTNRSRGYAFVQFEDHEIA 67
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ FE +G++ +V + FVHF +R A+
Sbjct: 518 SQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAM 576
>gi|384483751|gb|EIE75931.1| hypothetical protein RO3G_00635 [Rhizopus delemar RA 99-880]
Length = 831
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHF 45
L++RNLT CTE+ LKE FE+YG + V K+ K YA++ +
Sbjct: 360 LFIRNLTYACTEDDLKEVFEKYGTLSEVHMPIAKDTKKSKGYAYISY 406
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R +
Sbjct: 266 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVM 323
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
G+ V + P + +NRGF F+EY +H A +K++++ K+ V WA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAE 253
>gi|327290511|ref|XP_003229966.1| PREDICTED: RNA-binding protein 14-like [Anolis carolinensis]
Length = 607
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT +L+ F+++G V +KDYAFVH E ++A
Sbjct: 85 IFVGNVSATCTSGELRALFQEFGPVVECDTVKDYAFVHMEKDEDA 129
>gi|224068610|ref|XP_002302783.1| predicted protein [Populus trichocarpa]
gi|222844509|gb|EEE82056.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 31/118 (26%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIY 63
V LYV ++ + ++++++E F YG VE V Y
Sbjct: 177 VDKLYVGSINKLASKQEIEEIFSPYGHVEDV----------------------------Y 208
Query: 64 SSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTE 119
+ D+ K++RG F+++ +H+ +LA + G L + GCD +IV +ADP++ E
Sbjct: 209 IARDELKQSRGCAFVKF-AHRDMALAAIKGLNGTLTMRGCDQPLIVRFADPKKPKTGE 265
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R +
Sbjct: 265 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVM 322
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
G+ V + P + +NRGF F+EY +H A +K++++ K+ V WA+
Sbjct: 197 GVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLDDNAPTVSWAE 252
>gi|351697058|gb|EHA99976.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 187
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + T ++++ FEQYG+ IK+Y FVH ED A
Sbjct: 4 LFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFVHMEDETAA 48
>gi|422295771|gb|EKU23070.1| arginine serine-rich splicing factor [Nannochloropsis gaditana
CCMP526]
Length = 1161
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA-----FVHFEDRQEAI 52
+YV NL EE L+EAF+ YG +E V+ ++ A F+HF+D EAI
Sbjct: 374 VYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAI 424
>gi|354568213|ref|ZP_08987379.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353541178|gb|EHC10648.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHF-EDRQEAITVTG 56
+YV NL+ TEE LK F +YG+V+RV R++ +AFV ED QE +T
Sbjct: 13 TIYVGNLSYSATEEDLKAVFAEYGQVKRVVLPTDRDTGRLRGFAFVEMNEDTQEEAAITE 72
Query: 57 L 57
L
Sbjct: 73 L 73
>gi|290985168|ref|XP_002675298.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
gi|284088893|gb|EFC42554.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
Length = 641
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAIT 53
L++RN+ + EE LK+AFE +G + +VK R K Y F FE+R++A++
Sbjct: 213 LFIRNIPPHYDEETLKQAFEVFGPISKVKIMIDINTQRSKCYGFCKFENRKDALS 267
>gi|186682695|ref|YP_001865891.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186465147|gb|ACC80948.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 104
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFE-DRQEAITVTGL 57
+YV NL+ TEE LK+AF +YG V RV+ R + +AFV E D QE + L
Sbjct: 3 IYVGNLSYQVTEEDLKQAFAEYGTVSRVQLPTDRETGRPRGFAFVEMESDTQEQAAIDAL 62
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 42.0 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAIT-VTGLS 58
LYV+NL + +E LK+ FE +G + K R K + FV FE +EA T VT ++
Sbjct: 319 LYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMN 378
Query: 59 QVIIYSSP 66
++ S P
Sbjct: 379 SKMVCSKP 386
>gi|294463038|gb|ADE77057.1| unknown [Picea sitchensis]
Length = 528
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G++ K ++ AFV F D +AI S V
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGKIINTKVNVGANRNQAFVEFADLNQAI-----SMV 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 31/109 (28%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V +L + + ++++E F +YGR+E V Y
Sbjct: 250 LFVGSLNKQASVKEVEEVFSKYGRIEDV----------------------------YLMR 281
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQ 113
DD K++RG F++Y SH+ +LA G + GC+ +IV +ADP+
Sbjct: 282 DDQKQSRGCGFVKY-SHRDMALAAINALNGIYTMRGCEQPLIVRFADPK 329
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+E+LK+ FE +G++ +V + FVHF +R A+
Sbjct: 553 SQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAM 611
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 27/121 (22%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + T+E LKE + YG V+ +KD V ED A G+
Sbjct: 113 TLFLGNICKTWTKEALKEKLKHYG----VENVKDLTLV--EDSNNA----GM-------- 154
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQEEPDTETMSK 123
NRGF FLE+ S A A KRL R ++G D V +AD +P E M++
Sbjct: 155 ------NRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQ 207
Query: 124 V 124
V
Sbjct: 208 V 208
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+++LK+ FE +G++ +V + FVHF +R A+
Sbjct: 283 SQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSAM 341
>gi|344301362|gb|EGW31674.1| hypothetical protein SPAPADRAFT_62285 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
K+LYV NL++ +EE LK+ F G ++ VK + D YAF+ +E+ Q A
Sbjct: 71 KILYVGNLSKSISEEFLKDTFASAGAIQSVKILNDKNKPGFNYAFIEYENNQAA 124
>gi|410900506|ref|XP_003963737.1| PREDICTED: nucleolysin TIAR-like isoform 2 [Takifugu rubripes]
Length = 408
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K LYV NL++ TE + + F Q G + K I D +R + L+ ++
Sbjct: 8 KTLYVGNLSRDVTEILILQLFSQIGPCKSCKMITD-----VNNRDRLLEWLQLNNFYVWL 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
+ + +CF+E+ HK A A R + K+ G ++ V+WA
Sbjct: 63 CCLQHTSSDPYCFVEFVDHKDA--ASARATMNKRKILGKEVKVNWA 106
>gi|449297462|gb|EMC93480.1| hypothetical protein BAUCODRAFT_37162 [Baudoinia compniacensis UAMH
10762]
Length = 296
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N++++ E+ L+E FE++GRV RV R K +AFV + DR +A
Sbjct: 217 TLRVTNVSEFAEEQDLREIFERWGRVTRVFLAKDRETGRAKGFAFVSYADRSDA 270
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
S+VK +YV+NL + T+++LK+ FE +G++ +V + FVHF +R A+
Sbjct: 295 SQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAM 353
Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 46 EDRQEAITVTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
ED ++ +T G ++ V + ++ NRGF F++Y +H A +++++ + K+
Sbjct: 218 EDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNN 277
Query: 104 DIIVDWADPQEEPDTETMSKV 124
V WADP+ D+ S+V
Sbjct: 278 APTVSWADPK-NADSSPASQV 297
>gi|428672185|gb|EKX73099.1| conserved hypothetical protein [Babesia equi]
Length = 700
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITVT 55
K++ ++VRNL+ TEE+L+E F +YG +E K KD AF+ F +++A V
Sbjct: 363 KLRTIFVRNLSYEATEEELQEYFSKYGSIESCKICKDDKGANRGTAFILFSSKKDADEVL 422
Query: 56 GLSQVII 62
+ ++ +
Sbjct: 423 NMEELAL 429
>gi|294955170|ref|XP_002788430.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239903853|gb|EER20226.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 366
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAI---------- 52
KVLYVRN+ + TE+ + +GRV + ++D + F+ FED AI
Sbjct: 14 KVLYVRNVPESVTEQDIIAYCLTFGRVVNILLLRDKRHGFIEFEDESSAIKCYTYYNANP 73
Query: 53 ----------TVTGLSQVIIYSSPDDNKKNRGFCF 77
+G S++ PD N NR F
Sbjct: 74 LLITGHRLEFAFSGRSEITARRDPDSNPPNRILLF 108
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITV 54
++ + LYV+N + +E+ +KE FE YGR+ K R K + FV FE+ Q A+
Sbjct: 215 TQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAA 274
>gi|47219454|emb|CAG10818.1| unnamed protein product [Tetraodon nigroviridis]
Length = 413
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAI------ 52
L++ + + E+ LK FEQ+G++ + IKD AF+ + R+ A+
Sbjct: 12 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 71
Query: 53 ----TVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGR-LKVWGCDIIV 107
T+ G+++ I P D++ G F++Y S+ A A L R L ++V
Sbjct: 72 HEQKTLPGMNRP-IQVKPADSESRGGCAFVKYQSNAEAQAAINTLHGSRTLPGASSSLVV 130
Query: 108 DWADPQEEPDTETMSKV 124
+AD ++E M +V
Sbjct: 131 KFADSEKERSLRRMQQV 147
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 30/118 (25%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LY+ L Q TEE L++ FE G V+ VK I
Sbjct: 84 RALYIGGLDQRVTEEVLRQIFETTGHVQNVKII--------------------------- 116
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMS 122
PD N + + F+EYD +A A + L GR +V +I V+WA + E S
Sbjct: 117 -PDKNARGYNYGFVEYDDPGAAERAMQTL-NGR-RVHQSEIRVNWAYQSNTTNKEDTS 171
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 30/118 (25%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LY+ L Q TEE L++ FE G V+ VK I
Sbjct: 82 RALYIGGLDQRVTEEVLRQIFETTGHVQNVKII--------------------------- 114
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMS 122
PD N + + F+EYD +A A + L GR +V +I V+WA + E S
Sbjct: 115 -PDKNARGYNYGFVEYDDPGAAERAMQTL-NGR-RVHQSEIRVNWAYQSNTTNKEDTS 169
>gi|367045462|ref|XP_003653111.1| hypothetical protein THITE_2063817 [Thielavia terrestris NRRL 8126]
gi|347000373|gb|AEO66775.1| hypothetical protein THITE_2063817 [Thielavia terrestris NRRL 8126]
Length = 299
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +AI
Sbjct: 220 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRNDAI 274
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFEDRQEAIT 53
L+VR L++ TEE L+ FE++G V + R K + FV+FE+ ++A+T
Sbjct: 192 LFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVT 245
>gi|392402152|ref|YP_006438764.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390610106|gb|AFM11258.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 117
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI-TVTGL 57
+YV NL TE+ LK+AF ++G V+ K I D +AFV E++ E I ++G+
Sbjct: 3 IYVGNLAYSVTEQDLKQAFSEFGTVQSAKMIMDRDTGRPKGFAFVEMENKSEGIKAISGM 62
Query: 58 S 58
+
Sbjct: 63 N 63
>gi|452979604|gb|EME79366.1| hypothetical protein MYCFIDRAFT_212200 [Pseudocercospora fijiensis
CIRAD86]
Length = 294
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N++++ E L++ FE+YGRV RV R K +AFV + DR +A
Sbjct: 214 TLRVTNVSEFAEEGDLRDMFERYGRVTRVFLAKDRETGRAKGFAFVSYADRSDA 267
>gi|389635291|ref|XP_003715298.1| eukaryotic translation initiation factor 3 subunit G [Magnaporthe
oryzae 70-15]
gi|351647631|gb|EHA55491.1| eukaryotic translation initiation factor 3 subunit G [Magnaporthe
oryzae 70-15]
Length = 324
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E++L++ FE++GRV RV KD +AF+ F DR++A+
Sbjct: 245 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAV 299
>gi|224141415|ref|XP_002324068.1| predicted protein [Populus trichocarpa]
gi|222867070|gb|EEF04201.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E E +G++ K ++ AFV F ++ +AI + V
Sbjct: 17 KVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVEFAEQNQAIQM-----V 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + + RG
Sbjct: 72 SYYASSSEPAQVRG 85
>gi|442755589|gb|JAA69954.1| Putative grp-3 498 glycine rich family [Ixodes ricinus]
Length = 239
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+V+ +K+YAFVH + EA
Sbjct: 4 LYVGSLPEGCDNASLEAIFAKYGKVDECDIVKNYAFVHMANEDEA 48
>gi|357119737|ref|XP_003561590.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Brachypodium distachyon]
Length = 522
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR----IKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +GR+ K ++ AFV F D +AI S V
Sbjct: 21 KVLHLRNLPWECTEEELVELCKPFGRIVNTKSGVGANRNQAFVEFTDVNQAI-----SMV 75
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
++S + + RG +++Y + +
Sbjct: 76 SYFASSSEPAQIRGKTVYIQYSNRQ 100
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 26/121 (21%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ T+E +K KR+ DY + G+ + +
Sbjct: 592 TLFLGNICNTWTKEAIK------------KRLLDYG------------IEGVQSLTLVPD 627
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII--VDWADPQEEPDTETMSK 123
+ ++RGF FLE+ H A LA KRL + V +A+P +EPD E M++
Sbjct: 628 TQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMAQ 687
Query: 124 V 124
V
Sbjct: 688 V 688
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
M++VK +++ L Y E+++K+ F+ YG +ERV + D+ FV+F + A+
Sbjct: 685 MAQVKSVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAAL 744
Query: 53 T 53
Sbjct: 745 A 745
>gi|224488025|sp|A4RHN3.1|EIF3G_MAGO7 RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|440466137|gb|ELQ35419.1| eukaryotic translation initiation factor 3 subunit G [Magnaporthe
oryzae Y34]
gi|440480691|gb|ELQ61344.1| eukaryotic translation initiation factor 3 subunit G [Magnaporthe
oryzae P131]
Length = 303
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR++A+
Sbjct: 222 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAV 278
>gi|452836303|gb|EME38247.1| hypothetical protein DOTSEDRAFT_75720 [Dothistroma septosporum
NZE10]
Length = 299
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N++++ E L+E FE++GRV RV R K +AFV + DR +A
Sbjct: 220 TLRVTNVSEFAEEADLREMFERWGRVTRVFLAKDRETGRAKGFAFVSYADRSDA 273
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 18 EEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKN 72
E KL+E F Q+G VE VK K YAFVHF +R A + + D
Sbjct: 326 EGKLREVFGQFGEVESVKLPRGDATKGYAFVHFTERSSAEKAVEAAAASASGARGDESAM 385
Query: 73 RGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSK 123
G +A G +++ GC++ V+ A P+ E + E K
Sbjct: 386 DGV-----------------VAAGAVQLQGCNLTVEIARPERERNNEHRDK 419
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL +E L+E FEQYG+V + I D +TG S
Sbjct: 6 LYVGNLPFRISENDLRELFEQYGQVNEINLIVD-------------KMTGQS-------- 44
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
RGF F+ ++ ++A A L + G I+V+ A P+EE
Sbjct: 45 ------RGFAFVTMETSQAAQSAIDSLNG--TSISGRQIVVNEAKPREE 85
>gi|393904919|gb|EJD73832.1| hypothetical protein LOAG_18772 [Loa loa]
Length = 199
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T ++L++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQELEDAFNRFGRIRKVWVARRPPGFAFVEFEDARDA 59
>gi|116787007|gb|ABK24339.1| unknown [Picea sitchensis]
Length = 491
Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +GR+ K + AFV F D +AI + V
Sbjct: 18 KVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANHNQAFVEFADLNQAI-----AMV 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKSVYLQYSNRQ 97
>gi|324504156|gb|ADY41795.1| APOBEC1 complementation factor [Ascaris suum]
Length = 227
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 25 FEQYGRVERVKRIKDYAFVHFEDRQEAI 52
F +G V+ VK+IKDYAF+HF +R+ A+
Sbjct: 2 FSAHGEVDHVKKIKDYAFIHFNEREPAV 29
>gi|328874752|gb|EGG23117.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 304
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITV 54
+VL V L TE L + F +YG++E+V I+D YAF++F+++++A++
Sbjct: 112 RVLGVFGLNPRTTESDLDQVFSKYGKLEKVNLIRDRQTRSSRCYAFIYFDNKEDAVSA 169
>gi|367022312|ref|XP_003660441.1| hypothetical protein MYCTH_2314155 [Myceliophthora thermophila ATCC
42464]
gi|347007708|gb|AEO55196.1| hypothetical protein MYCTH_2314155 [Myceliophthora thermophila ATCC
42464]
Length = 295
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L+E FE++GRV RV KD +AF+ + DR++AI
Sbjct: 214 LATLRVTNVSEMAEEQELREMFERFGRVTRVFLAKDRDTGLAKGFAFISYADREDAI 270
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 41.6 bits (96), Expect = 0.100, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 31/109 (28%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V +L + T ++++E F +YGRVE V Y
Sbjct: 179 LFVGSLNKQATVKEVEEIFSKYGRVEDV----------------------------YLMR 210
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQ 113
D+ K++RG F++Y SH+ +LA G + GC+ +IV +ADP+
Sbjct: 211 DEKKQSRGCGFVKY-SHRDMALAAINALNGIYTMRGCEQPLIVRFADPK 258
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 41.6 bits (96), Expect = 0.100, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 31/109 (28%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V +L + T ++++E F +YGRVE V Y
Sbjct: 179 LFVGSLNKQATVKEVEEIFSKYGRVEDV----------------------------YLMR 210
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD--IIVDWADPQ 113
D+ K++RG F++Y SH+ +LA G + GC+ +IV +ADP+
Sbjct: 211 DEKKQSRGCGFVKY-SHRDMALAAINALNGIYTMRGCEQPLIVRFADPK 258
>gi|340376678|ref|XP_003386859.1| PREDICTED: probable RNA-binding protein 18-like [Amphimedon
queenslandica]
Length = 227
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V NL + T + + + YG++ V F + +++S+
Sbjct: 57 LWVGNLDKRLTHQNILQFSSPYGKI-----------VSF-------------KYMLHSTG 92
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
+ + RG+CF+EY + + A AK+ + G++ + G +IIVDWA P +
Sbjct: 93 AEKGEPRGYCFIEYSTREEAEKAKETM-NGKVAL-GKNIIVDWARPDQ 138
>gi|154341607|ref|XP_001566755.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064080|emb|CAM40272.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 614
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQE 50
VL+V NL Y T EKL E FE +G + V R+ + AF+H+E ++
Sbjct: 158 VLWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQ 204
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV L Q TE+ L++ FE G V+ VK I
Sbjct: 86 RALYVGGLDQRVTEDVLRQIFETTGHVQNVKII--------------------------- 118
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
PD N K + F+EYD +A A + L GR +V +I V+WA
Sbjct: 119 -PDKNAKGYNYGFVEYDDPGAAERAMQTL-NGR-RVHQSEIRVNWA 161
>gi|324532579|gb|ADY49247.1| Splicing factor, arginine/serine-rich 6, partial [Ascaris suum]
Length = 156
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T +++++AF +YGR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQEVEDAFSRYGRIRKVWVARRPPGFAFVEFEDSRDA 59
>gi|403339745|gb|EJY69134.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 593
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITVTGLSQ 59
LYV+N + EE+LK FE+YG +ER+K I YAFV +++ + A SQ
Sbjct: 301 LYVKNFPENTNEEQLKAYFEKYGEIERIKLIHKEGAAVYAFVCYKNPESATYAKQQSQ 358
>gi|157872315|ref|XP_001684706.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|68127776|emb|CAJ06143.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 619
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQE 50
VL+V NL Y T EKL E FE +G + V R+ + AF+H+E ++
Sbjct: 158 VLWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQ 204
>gi|387018162|gb|AFJ51199.1| RNA-binding protein 14-like [Crotalus adamanteus]
Length = 596
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 53
++V N++ CT +L+ F+++G V +KDYAFVH E ++A T
Sbjct: 85 IFVGNVSATCTSGELRVLFQEFGPVIECDIVKDYAFVHMEKDEDART 131
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 52 ITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
I + + V + S ++ NRGF FLE ++ + A +A K+L+ +I V WA+
Sbjct: 113 IGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAE 172
Query: 112 PQEEPD 117
P +PD
Sbjct: 173 PLNDPD 178
>gi|297796143|ref|XP_002865956.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
gi|297311791|gb|EFH42215.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G V K ++ AF+ FED +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQM-----I 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|15238677|ref|NP_200130.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
gi|75333813|sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2
gi|9757999|dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like
[Arabidopsis thaliana]
gi|53749130|gb|AAU90050.1| At5g53180 [Arabidopsis thaliana]
gi|55733737|gb|AAV59265.1| At5g53180 [Arabidopsis thaliana]
gi|332008935|gb|AED96318.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
Length = 429
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G V K ++ AF+ FED +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQM-----I 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEA-ITVTGL 57
+YV NL TEE+L++AF Q+G V++V R K + FV +D EA + GL
Sbjct: 29 IYVGNLAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAIRGL 88
Query: 58 SQ 59
++
Sbjct: 89 NE 90
>gi|340054118|emb|CCC48412.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 773
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYC-TEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEA 51
++V NL Y TE+ L+E F ++GRV RV ++ D Y FVHF +EA
Sbjct: 210 VWVGNLDPYIHTEDYLQEVFREFGRVIRVAKVPDKSYCFVHFRYVEEA 257
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHF-EDRQEAITVTGLS 58
LYV+NL +E+LKEAF YG + K R K + FV F + Q A VT ++
Sbjct: 286 LYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMN 345
Query: 59 QVIIYSSP 66
++ S P
Sbjct: 346 ATLVGSKP 353
>gi|401425555|ref|XP_003877262.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493507|emb|CBZ28795.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 619
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQE 50
VL+V NL Y T EKL E FE +G + V R+ + AF+H+E ++
Sbjct: 158 VLWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQ 204
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
L+V L+Q+ TEE L EAF +YG+V ++D + FV F +EA
Sbjct: 37 LFVGGLSQFATEESLAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEA 89
>gi|348525775|ref|XP_003450397.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 338
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVIIYSS 65
++V NL + E+++K F +YG V IK++AFVH +DR+ A + L ++ +
Sbjct: 4 IFVGNLPRATNEDEIKALFTEYGTVTECAIIKNFAFVHMDDRKAATKAIKNLHLYKLHGT 63
Query: 66 P 66
P
Sbjct: 64 P 64
>gi|340960339|gb|EGS21520.1| eukaryotic translation initiation factor 3 subunit-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 289
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E +L+E FE++GRV RV KD +AF+ F DR +A+
Sbjct: 208 MATLRVTNVSELAEESELREMFERFGRVTRVFLAKDRETGLAKGFAFISFADRADAV 264
>gi|414870439|tpg|DAA48996.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 314
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L + + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + + RG
Sbjct: 72 SYYASSSEPAQVRG 85
>gi|224052944|ref|XP_002297637.1| predicted protein [Populus trichocarpa]
gi|222844895|gb|EEE82442.1| predicted protein [Populus trichocarpa]
Length = 278
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED---RQEAITVTGLSQVI-I 62
L VRNL C E L+ FEQ+G ++ + +DY FED E + G ++
Sbjct: 38 LLVRNLRHDCRPEDLRRPFEQFGALKDIYLPRDYYTGSFEDDVNDSEDLKEVGFEYIVKR 97
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111
+ K+ RGF F+++ A+ AK + GR+ + G ++ V +A+
Sbjct: 98 FQVLKSFKEPRGFGFVQFADPHDAAEAKHHM-DGRV-LLGRELTVVFAE 144
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAIT-VTGLS 58
LYV+NL + +E LK+ FE +G + K R K + FV FE +EA T VT ++
Sbjct: 137 LYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMN 196
Query: 59 QVIIYSSP 66
++ S P
Sbjct: 197 SKMVCSKP 204
>gi|168027197|ref|XP_001766117.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682760|gb|EDQ69176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 488
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL+VRNL C+EE+L E + +G+V K + AFV F D +AI + V
Sbjct: 18 KVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFVEFADLNQAI-----AMV 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHKSASLAK 90
Y+S + + RG +L+Y + + +K
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVTSK 103
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+YV NL+ TE +LKEAF Q+G V R K +KD + FV +D E
Sbjct: 3 IYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEG 55
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAIT-VTGLS 58
LYV+NL + +E LK+ FE +G + K R K + FV FE +EA T VT ++
Sbjct: 31 LYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMN 90
Query: 59 QVIIYSSP 66
++ S P
Sbjct: 91 SKMVCSKP 98
>gi|346323732|gb|EGX93330.1| eukaryotic translation initiation factor 3, subunit 4 [Cordyceps
militaris CM01]
Length = 296
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E +L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 215 LATLRVTNVSEMAEENELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAV 271
>gi|294917415|ref|XP_002778459.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239886859|gb|EER10254.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 231
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 33/111 (29%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
+ + LYV NL+ Y TEE++ E F + G+V++V GL++
Sbjct: 30 LQRSSTLYVGNLSFYTTEEQIMELFSKCGKVKKV-------------------TMGLNRF 70
Query: 61 IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL--KVWGCDIIVDW 109
K GFCF+EYDS + A+ A+ L T +V I VDW
Sbjct: 71 --------KKSPCGFCFVEYDSREDAAWAQNLLNTSSFDDRV----IRVDW 109
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 27/111 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L++ N+ + TE++ ++ E+ G VE ++ IKD
Sbjct: 188 LFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKD-------------------------- 221
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
P +NRGF F+ Y ++ A +++++ K+ G V WADP+ P
Sbjct: 222 PQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLDGHTPTVSWADPKGTP 272
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKDYAFVHFEDRQEAI 52
S+VK LYV+N+ + + E+LK F+++G V +V +D+ F+H+ +R A+
Sbjct: 280 SQVKALYVKNIPENTSTEQLKGLFQRHGDVTKVVMPPGKAGKRDFGFIHYAERSSAL 336
>gi|6474847|dbj|BAA87307.1| Hypothetical protein YPR112c [Schizosaccharomyces pombe]
Length = 160
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+S+ K L++RNLT C E+ LK F +G++E+V K +A++ F D +A+
Sbjct: 16 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 75
>gi|298710995|emb|CBJ32302.1| arginine/serine-rich splicing factor 6 [Ectocarpus siliculosus]
Length = 235
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+Y+ +L+ + + L AF +YGR+E++ +AF+ FEDR++A
Sbjct: 5 IYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDA 49
>gi|212536154|ref|XP_002148233.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Talaromyces marneffei ATCC 18224]
gi|210070632|gb|EEA24722.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Talaromyces marneffei ATCC 18224]
Length = 296
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E++L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 215 LATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRDTQRAKGFAFISFADRSDA 270
>gi|414870438|tpg|DAA48995.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 140
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L + + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +++Y + +
Sbjct: 72 SYYASSSEPAQVRGKTVYIQYSNRQ 96
>gi|432863511|ref|XP_004070103.1| PREDICTED: RNA-binding protein 28-like [Oryzias latipes]
Length = 687
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 32/117 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L +RNL+ C+E+ LKE FE+YG V K I P
Sbjct: 115 LIIRNLSFKCSEDDLKEVFEKYGTVLEAK--------------------------IPLKP 148
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK-VWGCDIIVDWADPQEEPDTETMS 122
D K RGF F+ + K+ A K L LK + G + VDWA P+++ T S
Sbjct: 149 DG--KMRGFAFVLF---KNVCGAAKALKAMNLKEIKGRPVAVDWAVPKDKYTASTQS 200
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+YV+NL + TEEKL+E FE++G + V +KD + FV +ED + A
Sbjct: 211 VYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAA 262
>gi|146093700|ref|XP_001466961.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|398019332|ref|XP_003862830.1| RNA-binding protein, putative [Leishmania donovani]
gi|134071325|emb|CAM70011.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|322501061|emb|CBZ36138.1| RNA-binding protein, putative [Leishmania donovani]
Length = 619
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQE 50
VL+V NL Y T EKL E FE +G + V R+ + AF+H+E ++
Sbjct: 158 VLWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQ 204
>gi|302143674|emb|CBI22535.3| unnamed protein product [Vitis vinifera]
Length = 1311
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM-----I 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|343473071|emb|CCD14942.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 764
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 7 LYVRNL-TQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEA 51
++V NL Q TEE LK+ F ++GRV RV ++ D Y FVHF +EA
Sbjct: 196 VWVGNLDAQQHTEEFLKQEFREFGRVIRVAKVPDKSYCFVHFRYVEEA 243
>gi|336469273|gb|EGO57435.1| hypothetical protein NEUTE1DRAFT_129383 [Neurospora tetrasperma
FGSC 2508]
Length = 494
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 23/119 (19%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV L TE+ L++ FE G V+ VK I D + + G Q
Sbjct: 91 RALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPD----------KNVGKPGSEQ----- 135
Query: 65 SPDDNKKNRG--FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA---DPQEEPDT 118
P D K+ +G + F+EYD +A A + L GR +V +I V+WA + Q + DT
Sbjct: 136 -PRDEKQQKGYNYGFVEYDDPGAAERAMQTL-NGR-RVHQSEIRVNWAYQSNNQNKEDT 191
>gi|219363125|ref|NP_001137030.1| uncharacterized protein LOC100217199 [Zea mays]
gi|194698066|gb|ACF83117.1| unknown [Zea mays]
gi|414870440|tpg|DAA48997.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 296
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RN+ CTEE+L + + +GRV V ++ AFV F D+ +AI S V
Sbjct: 17 KVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + + RG
Sbjct: 72 SYYASSSEPAQVRG 85
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFEDRQEA 51
LYV++L T++KL+E FE +G++ E K +AFV FEDRQ A
Sbjct: 291 LYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHA 342
>gi|427718424|ref|YP_007066418.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427350860|gb|AFY33584.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFE-DRQEAITVTGL 57
+YV NL+ TEE LK AF +YG V RV+ R + +AFV E D QE + L
Sbjct: 3 IYVGNLSYQVTEEDLKRAFAEYGTVNRVQLPTDRETGRPRGFAFVEMETDAQETAAIEAL 62
>gi|298492825|ref|YP_003723002.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234743|gb|ADI65879.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 101
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFE-DRQEAITVTGL 57
+YV NL+ TE+ LK+AF +YG+V RV+ R++ +AFV E + QE + L
Sbjct: 3 IYVGNLSYQVTEDDLKQAFAEYGKVSRVQLPTDRETGRLRGFAFVEMETEDQETAAIEAL 62
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAIT 53
+YV+NL++ TEE LK+AF +YG + ++D + FV+FE+ +A T
Sbjct: 205 VYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAAT 258
>gi|353558839|sp|C8V330.1|EIF3G_EMENI RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|259479801|tpe|CBF70356.1| TPA: Eukaryotic translation initiation factor 3 subunit G
(eIF3g)(Translation initiation factor eIF3 p33 subunit
homolog)(eIF3 p33 homolog)(Eukaryotic translation
initiation factor 3 RNA-binding subunit)(eIF-3
RNA-binding subunit)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B0B3] [Aspergillus
nidulans FGSC A4]
Length = 289
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N+++ E++L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 210 TLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 263
>gi|324512982|gb|ADY45358.1| Splicing factor, arginine/serine-rich 6 [Ascaris suum]
Length = 142
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T +++++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQEIEDAFNRFGRIRKVWVARRPPGFAFVEFEDSRDA 59
>gi|393904918|gb|EJD73831.1| hypothetical protein, variant [Loa loa]
Length = 145
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T ++L++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQELEDAFNRFGRIRKVWVARRPPGFAFVEFEDARDA 59
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 29/112 (25%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+YV NL+ T+E L+ AFE YG V K I D F +R
Sbjct: 20 IYVGNLSYQVTDEDLRAAFENYGEVSSAKVIVD----KFSNRS----------------- 58
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118
+GF F+E S + A A K + +K G I+V+ A P+ E +
Sbjct: 59 ------KGFGFVEMASKEDAETAIKEMHDSDIK--GRQIVVNEARPRNESNN 102
>gi|170595883|ref|XP_001902557.1| Sr protein [Brugia malayi]
gi|158589706|gb|EDP28594.1| Sr protein, putative [Brugia malayi]
Length = 153
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T ++L++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 21 VYVGGLPQDATSQELEDAFNRFGRIRKVWVARRPPGFAFVEFEDARDA 68
>gi|224068024|ref|XP_002302651.1| predicted protein [Populus trichocarpa]
gi|222844377|gb|EEE81924.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE-DRQEAITVTGLSQV 60
+ ++V N + L+ F +YGRVERV +AFV+FE DR A V GL +
Sbjct: 2 ARPVFVGNFEHETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNI 59
>gi|221504716|gb|EEE30381.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
VEG]
Length = 802
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITVTG 56
K ++V NL C+EE L+ A E G V+ V+ I+D + FV FEDR A
Sbjct: 666 KTVFVGNLPSRCSEEDLRRALESNGTVKAVRIIRDKVTTESKGFGFVCFEDRVSAARAVL 725
Query: 57 LSQVII 62
S ++
Sbjct: 726 ASNGVV 731
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEA 51
K L+V NL+ + TE+ L +AF +YG V VK R K +AFV F +EA
Sbjct: 240 KELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDGRPKGFAFVEFATHKEA 292
>gi|221484519|gb|EEE22813.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
Length = 802
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITVTG 56
K ++V NL C+EE L+ A E G V+ V+ I+D + FV FEDR A
Sbjct: 666 KTVFVGNLPSRCSEEDLRRALESNGTVKAVRIIRDKVTTESKGFGFVCFEDRVSAARAVL 725
Query: 57 LSQVII 62
S ++
Sbjct: 726 ASNGVV 731
>gi|291228234|ref|XP_002734084.1| PREDICTED: small nuclear ribonucleoprotein 35kDa (U11/U12)-like
[Saccoglossus kowalevskii]
Length = 192
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 29/104 (27%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K ++V L TEE +++ F +YG ++R+K ++D VTG S
Sbjct: 54 KTVFVARLNLNTTEETIEKTFSRYGEIKRLKLVRD-------------IVTGFS------ 94
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
+G+ F+EY S KSA A+++ +L V G ++ VD
Sbjct: 95 --------KGYAFVEYCSQKSAERAERK--ADKLIVDGSELFVD 128
>gi|357444075|ref|XP_003592315.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
gi|355481363|gb|AES62566.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
Length = 430
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
K+K ++ N C E +L+ F +YG+V+RV +AF++ ED ++A
Sbjct: 42 KMKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDA 90
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 5 KVLYVRNLTQYCTEEK-LKEAFEQYGRVERVKRIKDYAFVHFE---DRQEAITVTGLSQV 60
K L+V N Y T + L+ FE YG++ V+ K++AFV +E D +A+ T S++
Sbjct: 138 KTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKL 197
Query: 61 ------IIYSSPDDNKKN 72
+ +++ DD+++N
Sbjct: 198 MDRVISVEFAARDDDRRN 215
>gi|242795057|ref|XP_002482501.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Talaromyces stipitatus ATCC 10500]
gi|218719089|gb|EED18509.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Talaromyces stipitatus ATCC 10500]
Length = 292
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N+++ E++L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 213 TLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRDTQRAKGFAFISFADRSDA 266
>gi|399218183|emb|CCF75070.1| unnamed protein product [Babesia microti strain RI]
Length = 198
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEA-------- 51
++LY+RNL T E+L + F +YG V +++R K AFV +ED +A
Sbjct: 113 RILYLRNLPYKITPEELYDIFGKYGPVRQIRRGVSNSTKGTAFVVYEDIYDAKMALEHLS 172
Query: 52 -ITVTGLSQVIIYSSPDDNKKNR 73
V G V++Y +P +K R
Sbjct: 173 GFNVAGRYLVVLYFNPTRLQKKR 195
>gi|294909465|ref|XP_002777772.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239885734|gb|EER09567.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 632
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAI---------- 52
KVLYVRN+ + TE+ + +GRV + ++D + F+ FED AI
Sbjct: 59 KVLYVRNVPESVTEQDIIAYCLTFGRVVNILLLRDKRHGFIEFEDESSAIKCYTYYNANP 118
Query: 53 ----------TVTGLSQVIIYSSPDDNKKNRGFCF 77
+G S++ PD N NR F
Sbjct: 119 LLITGHRLEFAFSGRSEITARRDPDSNPPNRILLF 153
>gi|342880270|gb|EGU81436.1| hypothetical protein FOXB_08018 [Fusarium oxysporum Fo5176]
Length = 295
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 216 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAV 270
>gi|225452861|ref|XP_002283752.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform
2 [Vitis vinifera]
Length = 420
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G++ K ++ AFV F D +AI S V
Sbjct: 17 KVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + + RG
Sbjct: 72 SYYASSSEPAQVRG 85
>gi|225452859|ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform
1 [Vitis vinifera]
gi|296082938|emb|CBI22239.3| unnamed protein product [Vitis vinifera]
Length = 449
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G++ K ++ AFV F D +AI S V
Sbjct: 17 KVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + + RG
Sbjct: 72 SYYASSSEPAQVRG 85
>gi|336265836|ref|XP_003347688.1| hypothetical protein SMAC_03786 [Sordaria macrospora k-hell]
gi|380091222|emb|CCC11079.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 297
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 216 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAV 272
>gi|431917652|gb|ELK16917.1| CUG-BP- and ETR-3-like factor 2 [Pteropus alecto]
Length = 443
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA----------FVHFEDRQEAI---- 52
++V + + +E++LKE FE YG V ++ ++D + FV F R+ A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 53 ------TVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD-- 104
T+ G+ I P D++K+ G F+ + + A A K + + + GC
Sbjct: 78 ALHNIKTLPGMHHP-IQMKPADSEKSNGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGCSSP 135
Query: 105 IIVDWADPQEEPD 117
I+V +AD Q++ +
Sbjct: 136 IVVKFADTQKDKE 148
>gi|52840506|ref|YP_094305.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52627617|gb|AAU26358.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 92
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
M K K +YV NL TEE L F QYG++E + IKD + F+ F +QEA
Sbjct: 1 MMKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEA 59
>gi|83643344|ref|YP_431779.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631387|gb|ABC27354.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 92
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+YV NL+ TE+ L+EAF YG + V I+D
Sbjct: 3 IYVGNLSYQVTEDDLREAFAAYGDISNVNIIRDR-------------------------- 36
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
D +++GF F+E + A A ++L LK G ++ V+ A P+EE
Sbjct: 37 -DTGQSKGFGFVEMSDNGQAEEAIQKLNESNLK--GRNMKVNEARPREE 82
>gi|118488039|gb|ABK95840.1| unknown [Populus trichocarpa]
Length = 442
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFIEFSDLNQAI-----AMI 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|378776211|ref|YP_005184641.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507018|gb|AEW50542.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 112
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
M K K +YV NL TEE L F QYG++E + IKD + F+ F +QEA
Sbjct: 21 MMKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEA 79
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+ VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R +
Sbjct: 161 NHVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVM 219
>gi|358384661|gb|EHK22258.1| hypothetical protein TRIVIDRAFT_71507 [Trichoderma virens Gv29-8]
Length = 297
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITV 54
L V N+++ E +L++ FE++GRV RV KD +AF+ F D +A+T
Sbjct: 218 TLRVTNVSEMAEESELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADHSDAVTA 274
>gi|356531752|ref|XP_003534440.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 467
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL C+EE+L+E + +G++ K ++ AFV F D +AI S V
Sbjct: 17 KVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + RG
Sbjct: 72 SYYASSSEPAMVRG 85
>gi|356531750|ref|XP_003534439.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 505
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL C+EE+L+E + +G++ K ++ AFV F D +AI S V
Sbjct: 17 KVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + RG
Sbjct: 72 SYYASSSEPAMVRG 85
>gi|356531748|ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL C+EE+L+E + +G++ K ++ AFV F D +AI S V
Sbjct: 17 KVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI-----SMV 71
Query: 61 IIYSSPDDNKKNRG 74
Y+S + RG
Sbjct: 72 SYYASSSEPAMVRG 85
>gi|19112391|ref|NP_595599.1| RNA-binding protein Mrd1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|48474243|sp|O13620.1|MRD1_SCHPO RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|2257512|dbj|BAA21408.1| hypothetical protein YPR112c [Schizosaccharomyces pombe]
gi|13810221|emb|CAC37370.1| RNA-binding protein Mrd1 (predicted) [Schizosaccharomyces pombe]
Length = 833
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+S+ K L++RNLT C E+ LK F +G++E+V K +A++ F D +A+
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
>gi|296411493|ref|XP_002835465.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629249|emb|CAZ79622.1| unnamed protein product [Tuber melanosporum]
Length = 289
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N++++ E L+E FE++GRV RV R K +AF+ + DR +A
Sbjct: 209 LATLRVTNVSEFAEESDLREMFERFGRVTRVFLAKDRDTGRAKGFAFISYVDRSDA 264
>gi|313235941|emb|CBY25084.1| unnamed protein product [Oikopleura dioica]
Length = 465
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQE-AITVTGLS 58
L +RNL CTEEKLK F ++G V VK +++ + FV F E A V G+
Sbjct: 180 LIIRNLPWSCTEEKLKNVFHKFGAVTEVKIPLKADGKMRGFGFVQFTHGHESAKAVKGVK 239
Query: 59 QV 60
++
Sbjct: 240 EI 241
>gi|340521462|gb|EGR51696.1| hypothetical protein TRIREDRAFT_74774 [Trichoderma reesei QM6a]
Length = 296
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITV 54
L V N+++ E++L++ FE++GRV RV KD +AF+ F D +A+T
Sbjct: 217 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADHSDAVTA 273
>gi|384252045|gb|EIE25522.1| hypothetical protein COCSUDRAFT_61728 [Coccomyxa subellipsoidea
C-169]
Length = 443
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 29/104 (27%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K L+V ++ TE+KLK FE+YG V+RV+ +
Sbjct: 153 KTLFVARVSYDATEKKLKREFEEYGPVKRVRLVTQK------------------------ 188
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
D+ K RG+ F+E++ HK+ ++A GR K+ G ++VD
Sbjct: 189 ---DSGKPRGYAFVEFE-HKNDMKTAYKMADGR-KIEGRRVVVD 227
>gi|145252642|ref|XP_001397834.1| eukaryotic translation initiation factor 3 subunit G [Aspergillus
niger CBS 513.88]
gi|224488022|sp|A2R7Z2.1|EIF3G_ASPNC RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|134083387|emb|CAK97380.1| unnamed protein product [Aspergillus niger]
Length = 288
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 207 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 262
>gi|71001278|ref|XP_755320.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Aspergillus fumigatus Af293]
gi|74675609|sp|Q4X1I3.1|EIF3G_ASPFU RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|224488021|sp|B0XS28.1|EIF3G_ASPFC RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|66852958|gb|EAL93282.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Aspergillus fumigatus Af293]
gi|159129400|gb|EDP54514.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Aspergillus fumigatus A1163]
Length = 290
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 264
>gi|169783568|ref|XP_001826246.1| eukaryotic translation initiation factor 3 subunit G [Aspergillus
oryzae RIB40]
gi|238493393|ref|XP_002377933.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Aspergillus flavus NRRL3357]
gi|121932995|sp|Q2U002.1|EIF3G_ASPOR RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|83774990|dbj|BAE65113.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696427|gb|EED52769.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Aspergillus flavus NRRL3357]
gi|391869039|gb|EIT78246.1| translation initiation factor 3, subunit g [Aspergillus oryzae
3.042]
Length = 287
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 206 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 261
>gi|359490453|ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Vitis vinifera]
Length = 446
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-----AMI 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|356516021|ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 432
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-----AMI 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|356509289|ref|XP_003523383.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 433
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-----AMI 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>gi|147804914|emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera]
Length = 755
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G+V K ++ AF+ F D +AI + +
Sbjct: 327 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-----AMI 381
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 382 SYYASSSEPAQVRGKTVYLQYSNRQ 406
>gi|336471387|gb|EGO59548.1| hypothetical protein NEUTE1DRAFT_116556 [Neurospora tetrasperma
FGSC 2508]
gi|350292485|gb|EGZ73680.1| translation initiation factor 3, RNA-binding subunit [Neurospora
tetrasperma FGSC 2509]
Length = 297
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 216 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAV 272
>gi|325302660|tpg|DAA34468.1| TPA_exp: RNA-binding protein LARK [Amblyomma variegatum]
Length = 212
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+VE +K+YAFVH E+
Sbjct: 3 LYVGSLPEGCDAASLEALFAKYGKVEECDIVKNYAFVHMSSEDES 47
>gi|429851529|gb|ELA26715.1| peptidase family m20 m25 m40 protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 1027
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 949 LRVTNVSELAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFADRSDAV 1002
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAIT-VTGLS 58
LYV+NL + +E LK+ FE +G + K R K + FV FE +EA T V+ ++
Sbjct: 319 LYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMN 378
Query: 59 QVIIYSSP 66
++ S P
Sbjct: 379 SKMVCSKP 386
>gi|358368462|dbj|GAA85079.1| eukaryotic translation initiation factor 3 subunit EifCg
[Aspergillus kawachii IFO 4308]
Length = 288
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 207 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRDDA 262
>gi|427796859|gb|JAA63881.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 266
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+VE +K+YAFVH +E+
Sbjct: 34 LYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEES 78
>gi|427796855|gb|JAA63879.1| Putative glycine rich protein, partial [Rhipicephalus pulchellus]
Length = 249
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+VE +K+YAFVH +E+
Sbjct: 34 LYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEES 78
>gi|324506217|gb|ADY42661.1| Splicing factor, arginine/serine-rich 6 [Ascaris suum]
Length = 163
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T +++++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQEIEDAFNRFGRIRKVWVARRPPGFAFVEFEDSRDA 59
>gi|119480895|ref|XP_001260476.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Neosartorya fischeri NRRL 181]
gi|224488027|sp|A1DGS2.1|EIF3G_NEOFI RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|119408630|gb|EAW18579.1| eukaryotic translation initiation factor 3 subunit EifCg, putative
[Neosartorya fischeri NRRL 181]
Length = 290
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 264
>gi|350633722|gb|EHA22087.1| hypothetical protein ASPNIDRAFT_126136 [Aspergillus niger ATCC
1015]
Length = 281
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 200 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 255
>gi|310798289|gb|EFQ33182.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 298
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 217 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFADRGDAV 273
>gi|237836905|ref|XP_002367750.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211965414|gb|EEB00610.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482025|gb|EEE20391.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Toxoplasma
gondii GT1]
gi|221505100|gb|EEE30754.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 274
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFED 47
+ L+V ++ TE+KLK FEQYG ++RV+ I D Y F+ FE+
Sbjct: 98 RTLFVGGISYDTTEKKLKREFEQYGSIKRVRLIYDRNGKPRGYGFIEFEN 147
>gi|427706332|ref|YP_007048709.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427358837|gb|AFY41559.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 110
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFE-DRQEAITVTGL 57
+YV NL+ TEE LK AF +YG+V RV+ R + +AFV E + QE + L
Sbjct: 3 IYVGNLSYQVTEEDLKMAFSEYGKVSRVQLPTDRETGRPRGFAFVEMETESQETAAIEAL 62
>gi|312089500|ref|XP_003146270.1| hypothetical protein LOAG_10698 [Loa loa]
Length = 111
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
++V L + E+L+EAF +YGR+++V +R +AFV FED ++A
Sbjct: 12 VFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDA 59
>gi|164423677|ref|XP_962716.2| hypothetical protein NCU08046 [Neurospora crassa OR74A]
gi|224488070|sp|Q6MFP4.2|EIF3G_NEUCR RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|157070192|gb|EAA33480.2| hypothetical protein NCU08046 [Neurospora crassa OR74A]
Length = 297
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 216 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAV 272
>gi|427777187|gb|JAA54045.1| Putative glycine rich protein [Rhipicephalus pulchellus]
Length = 219
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
LYV +L + C L+ F +YG+VE +K+YAFVH +E+
Sbjct: 4 LYVGSLPEGCDVASLEALFAKYGKVEECDIVKNYAFVHMNSEEES 48
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
M++VK +++ L Y EE++K F+ YG +ERV + D+ FV+F +EA+
Sbjct: 418 MAQVKSVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEAL 477
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 60/177 (33%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQ--------- 49
++V L + EE +++ F Q G V V+ KD+ AFV F +++
Sbjct: 246 IFVGGLDREAVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAEM 305
Query: 50 --------------------------------EAIT-------VTGLSQVIIYSSPDDNK 70
EAI V G+ + + +
Sbjct: 306 KNPMIHGKRCGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEG 365
Query: 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC---DIIVDWADPQEEPDTETMSKV 124
++RGF FLE+ H A LA KRL ++G V +A+P +E D E M++V
Sbjct: 366 QSRGFAFLEFSCHADAMLAFKRLQQPD-ALFGHPERTAKVAFAEPIKEADAEVMAQV 421
>gi|357463843|ref|XP_003602203.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355491251|gb|AES72454.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 828
Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E +G+V K ++ AF+ F D +AI + +
Sbjct: 342 KVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFIEFADLNQAI-----AMI 396
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 397 SYYASSSEPAQVRGKTVYLQYSNRQ 421
>gi|223995751|ref|XP_002287549.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976665|gb|EED94992.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 76
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAIT 53
++V NL TEE+L AF + GR+ +V+ + D +AF+ FED Q A++
Sbjct: 1 VFVGNLAFSTTEEQLYTAFSELGRIVKVRMVSDNDTGKPRGFAFIEFEDPQAALS 55
>gi|403331840|gb|EJY64890.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 701
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIKD----YAFVHFEDRQEAITVTGLSQV 60
LYV+N + TEE+LK FE+YG +E +K +K+ YAFV +++ + A SQ
Sbjct: 298 LYVKNFPENTTEEQLKAYFEKYGEIESIKLNLKEGAAVYAFVCYKNPESATYAKQQSQT 356
>gi|71030936|ref|XP_765110.1| U1 small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|68352066|gb|EAN32827.1| U1 small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 227
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 30/104 (28%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ L+V N+ TE++L + F+ YG++ RV+ I D +
Sbjct: 107 RTLFVANIAYDVTEKQLSKEFQTYGKIRRVRMIHDRS----------------------- 143
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108
K RG+ F+EY++ + A KR A G+ K+ G +IVD
Sbjct: 144 -----NKPRGYAFIEYENERDMVTAYKR-ADGK-KISGRRVIVD 180
>gi|393904920|gb|EFO17802.2| hypothetical protein LOAG_10698 [Loa loa]
Length = 133
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA-ITVTGLSQVII 62
++V L + E+L+EAF +YGR+++V +R +AFV FED ++A V GL I
Sbjct: 12 VFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDAEDAVKGLDGTRI 71
>gi|322693671|gb|EFY85523.1| putative translation initiation factor eIF3 subunit [Metarhizium
acridum CQMa 102]
Length = 296
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E +L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 217 TLRVTNVSEMAEESELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAV 271
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGA 109
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGA 109
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGA 109
>gi|298714006|emb|CBJ27238.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1076
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTG 56
+ K + L VRNL + EE L EAF ++G + V ++ V D QE++T
Sbjct: 359 LQKQQRLIVRNLNFHAKEEDLAEAFSEFGPLSEVHIPTVKVTSRRRVKGTDEQESVT--- 415
Query: 57 LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++RGF F+++ K A+ K G LK+ G D VD++ +E+
Sbjct: 416 ------------ENRSRGFGFVQFLCPKDAARVVKD--HGVLKIKGRDAAVDYSITKEK 460
>gi|358393829|gb|EHK43230.1| hypothetical protein TRIATDRAFT_146202 [Trichoderma atroviride IMI
206040]
Length = 297
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITV 54
L V N+++ E +L++ FE++GRV RV KD +AF+ F D +A+T
Sbjct: 218 TLRVTNVSEMAEESELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADHSDAVTA 274
>gi|380472220|emb|CCF46890.1| eukaryotic translation initiation factor 3 subunit G
[Colletotrichum higginsianum]
Length = 93
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 12 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFADRGDAV 68
>gi|312089498|ref|XP_003146269.1| hypothetical protein LOAG_10696 [Loa loa]
Length = 113
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEA 51
+YV L Q T ++L++AF ++GR+ +V +R +AFV FED ++A
Sbjct: 12 VYVGGLPQDATSQELEDAFNRFGRIRKVWVARRPPGFAFVEFEDARDA 59
>gi|322706738|gb|EFY98318.1| putative translation initiation factor eIF3 subunit [Metarhizium
anisopliae ARSEF 23]
Length = 296
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
L V N+++ E +L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 217 TLRVTNVSEMAEESELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAV 271
>gi|84998042|ref|XP_953742.1| nucleolar phosphoprotein (Nopp34 ) [Theileria annulata]
gi|65304739|emb|CAI73064.1| nucleolar phosphoprotein (Nopp34 homologue), putative [Theileria
annulata]
Length = 195
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA-ITVTG 56
V+YV NL + +EE+LK F Q+G V +++ +K YAFV FED + A I
Sbjct: 14 VIYVGNLPKQLSEEQLKTYFNQFGDVIKIRLMKSKKTNGSRGYAFVQFEDHEIAKIAAET 73
Query: 57 LSQVII 62
+ + II
Sbjct: 74 MDKYII 79
>gi|257215904|emb|CAX83104.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITVTGLSQVI 61
++V LT+ + E L++ F QYGRV V K + +AF+ F+D + A ++ G Q I
Sbjct: 197 VHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFDDPEVAASLLGKDQEI 254
>gi|257215902|emb|CAX83103.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITVTGLSQVI 61
++V LT+ + E L++ F QYGRV V K + +AF+ F+D + A ++ G Q I
Sbjct: 197 VHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFDDPEVAASLLGKDQEI 254
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,946,330,600
Number of Sequences: 23463169
Number of extensions: 69354021
Number of successful extensions: 213095
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 1992
Number of HSP's that attempted gapping in prelim test: 208143
Number of HSP's gapped (non-prelim): 6541
length of query: 131
length of database: 8,064,228,071
effective HSP length: 97
effective length of query: 34
effective length of database: 10,083,267,974
effective search space: 342831111116
effective search space used: 342831111116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)