BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1185
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V+WADP EE
Sbjct: 272 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 331
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 332 PDPEVMAKVKVL 343
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 388
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 329 PDPEVMAKVKVL 340
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V+WADP E+
Sbjct: 179 GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 238
Query: 116 PDTETMSKVLML 127
PD E M+KV +L
Sbjct: 239 PDPEVMAKVKVL 250
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 9/80 (11%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 303
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 304 KDLEGENIEIVFAKPPDQKR 323
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAVAA 287
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSV 290
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I VDWADP++E
Sbjct: 167 GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDEETMQRVKVL 238
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAA 287
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E ++E + VT G+ VI+Y S D KNRGF F+EY+SHK+A++A+++L G ++WG
Sbjct: 140 EIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHT 199
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
I VDWA+P++E D ETM +V +L
Sbjct: 200 IQVDWAEPEKELDEETMQRVRVL 222
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT-VTGL 57
M +V+VLYVRNL TEE L+ F Q G VERVK++ DYAF+HF +R++A+T + +
Sbjct: 216 MQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 276 NGKVIDGSP 284
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K +F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 171 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 231 DWAEPEIDVDEDVMETVKIL 250
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 244 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 297
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+ Y+SH++A++A+++L G ++WG I V WA P++E
Sbjct: 167 GVMDVIVYPSATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM KV +L
Sbjct: 227 VDEETMQKVKVL 238
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITV 54
M KVKVLYVRNL TEE +K F +Y G VERVK+I+DYAFVHF R AI
Sbjct: 232 MQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRDYAFVHFFRRDYAIAA 287
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F + G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ ++GL
Sbjct: 80 LHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGL 131
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V NL+ T E+++ F QYG++ +K++ FVH + + EA
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEA 48
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----------GLSQVIIYSSP 66
T E+L F YG V +K +AFVH + A+ G + V+ S P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
N F+ S S + L R +V CD++ D+A E + + + +
Sbjct: 74 --RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 127 LD 128
L+
Sbjct: 132 LN 133
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----------GLSQVIIYSSP 66
T E+L F YG V +K +AFVH + A+ G + V+ S P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
N F+ S S + L R +V CD++ D+A E + + + +
Sbjct: 74 --RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 127 LD 128
L+
Sbjct: 132 LN 133
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----------GLSQVIIYSSP 66
T E+L F YG V +K +AFVH + A+ G + V+ S P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
N F+ S S + L R +V CD++ D+A E + + + +
Sbjct: 74 --RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 127 LD 128
L+
Sbjct: 132 LN 133
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVT----------GLSQVIIYSSP 66
T E+L F YG V +K +AFVH + A+ G + V+ S P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126
N F+ S S + L R +V CD++ D+A E + + + +
Sbjct: 74 --RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 127 LD 128
L+
Sbjct: 132 LN 133
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR++A+
Sbjct: 222 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAV 278
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G V K ++ AF+ FED +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQM-----I 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
L V N+++ E++L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 210 TLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 263
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAI 52
+S+ K L++RNLT C E+ LK F +G++E+V K +A++ F D +A+
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
>sp|A2R7Z2|EIF3G_ASPNC Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3
SV=1
Length = 288
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 207 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 262
>sp|Q4X1I3|EIF3G_ASPFU Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=tif35 PE=3 SV=1
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 264
>sp|B0XS28|EIF3G_ASPFC Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=tif35 PE=3 SV=1
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 264
>sp|Q2U002|EIF3G_ASPOR Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=tif35 PE=3 SV=1
Length = 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 206 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 261
>sp|A1DGS2|EIF3G_NEOFI Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=TIF35 PE=3 SV=1
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 264
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F DR +A+
Sbjct: 216 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAV 272
>sp|Q0CPF9|EIF3G_ASPTN Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3
SV=1
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E +L++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 205 LATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDA 260
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2
Length = 371
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 55 TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109
+G+S + ++ SP K+++ ++YDSH++A++AKK L G + G + V+W
Sbjct: 182 SGVSSISLHPSP--TKESQVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>sp|A1C646|EIF3G_ASPCL Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=tif35 PE=3 SV=1
Length = 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+ L V N+++ E ++++ FE++GRV RV +R K +AF+ F DR +A
Sbjct: 209 LATLRVTNVSELAEESEIRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 264
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 27/75 (36%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
L+V L+ TEEKLKE F +YG ++R++ ++D+ +TG S
Sbjct: 52 TLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDF-------------ITGFS------- 91
Query: 66 PDDNKKNRGFCFLEY 80
+G+ F+EY
Sbjct: 92 -------KGYAFIEY 99
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 52
+ L V N+++ E++L++ FE++GRV RV KD +AF+ + DR +A+
Sbjct: 222 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAV 278
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+K +YV+NL + T++ LK AF +YG++ +KD + FV+FE+ +A
Sbjct: 212 TKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAI-TVTGLS 58
LYV+NL ++EKLKE F +G V K ++D FV F +EA ++ LS
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 59 QVIIYSSP 66
+I S P
Sbjct: 380 GKMIESKP 387
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI-TVTGL 57
LYV +L T+ +L +AF Q G V V+ +D Y +V+F + Q+A + L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 58 SQVIIYSSP 66
+ + +Y P
Sbjct: 98 NYIPLYGKP 106
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F++R +A
Sbjct: 207 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDA 262
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+ L V N+++ E++L++ FE++GRV RV KD +AF+ F++R +A
Sbjct: 207 LATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDA 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,768,960
Number of Sequences: 539616
Number of extensions: 1692032
Number of successful extensions: 5667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 4951
Number of HSP's gapped (non-prelim): 943
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)