Query psy1185
Match_columns 131
No_of_seqs 107 out of 1377
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:31:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117|consensus 99.9 5.4E-26 1.2E-30 171.1 11.9 125 3-127 82-262 (506)
2 TIGR01648 hnRNP-R-Q heterogene 99.9 2.2E-21 4.8E-26 153.6 13.5 121 4-124 58-233 (578)
3 KOG0144|consensus 99.9 2.3E-21 4.9E-26 145.9 11.1 116 4-122 34-215 (510)
4 TIGR01659 sex-lethal sex-letha 99.9 1.4E-20 3E-25 142.0 15.1 113 3-116 106-278 (346)
5 TIGR01645 half-pint poly-U bin 99.9 2.9E-20 6.4E-25 147.7 15.3 111 3-116 106-287 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.6E-20 1.6E-24 137.8 15.1 110 3-115 2-173 (352)
7 PLN03134 glycine-rich RNA-bind 99.8 1.1E-19 2.3E-24 122.0 11.8 84 3-115 33-116 (144)
8 TIGR01622 SF-CC1 splicing fact 99.8 1.9E-18 4.2E-23 134.3 14.9 107 4-113 89-266 (457)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.5E-18 5.4E-23 129.5 11.8 82 5-115 270-351 (352)
10 TIGR01628 PABP-1234 polyadenyl 99.8 8.3E-18 1.8E-22 134.0 14.4 107 6-116 2-170 (562)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 9.1E-18 2E-22 131.7 13.8 111 4-114 2-175 (481)
12 KOG0109|consensus 99.8 8.7E-19 1.9E-23 126.6 7.4 113 5-119 3-156 (346)
13 TIGR01628 PABP-1234 polyadenyl 99.8 1.3E-17 2.9E-22 132.7 14.3 109 4-116 178-367 (562)
14 KOG0131|consensus 99.7 1.8E-17 3.8E-22 112.8 9.4 112 2-117 7-181 (203)
15 KOG0122|consensus 99.7 2.5E-17 5.3E-22 116.5 9.4 82 3-113 188-269 (270)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.4E-16 3E-21 125.4 14.7 107 4-112 295-501 (509)
17 PF00076 RRM_1: RNA recognitio 99.7 5.7E-17 1.2E-21 95.1 8.8 70 7-106 1-70 (70)
18 KOG0145|consensus 99.7 4.2E-17 9.2E-22 116.6 9.4 110 4-116 41-212 (360)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.9E-16 6.3E-21 123.6 14.9 108 4-113 175-375 (509)
20 PLN03120 nucleic acid binding 99.7 1.1E-16 2.5E-21 115.2 11.5 80 1-113 1-80 (260)
21 KOG0127|consensus 99.7 1.4E-16 2.9E-21 123.3 11.6 109 5-117 6-200 (678)
22 KOG0149|consensus 99.7 7.8E-17 1.7E-21 113.4 6.9 79 3-111 11-89 (247)
23 KOG0121|consensus 99.7 1.7E-16 3.7E-21 102.5 7.4 80 3-111 35-114 (153)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 1.5E-15 3.2E-20 119.3 14.2 108 4-113 275-480 (481)
25 KOG0117|consensus 99.7 8E-16 1.7E-20 116.6 11.5 109 4-119 164-337 (506)
26 KOG0148|consensus 99.7 8.9E-16 1.9E-20 110.2 11.0 102 5-115 63-240 (321)
27 PF14259 RRM_6: RNA recognitio 99.6 3E-15 6.5E-20 88.3 8.5 70 7-106 1-70 (70)
28 KOG0107|consensus 99.6 2.5E-15 5.3E-20 101.8 8.8 78 4-115 10-87 (195)
29 TIGR01648 hnRNP-R-Q heterogene 99.6 5E-15 1.1E-19 117.7 10.9 78 1-115 230-309 (578)
30 KOG0145|consensus 99.6 5.7E-15 1.2E-19 105.8 10.0 107 4-113 127-358 (360)
31 KOG0148|consensus 99.6 2.9E-15 6.3E-20 107.5 8.3 109 3-114 5-143 (321)
32 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-14 4.5E-19 111.8 13.9 50 4-53 186-243 (457)
33 PLN03213 repressor of silencin 99.6 7.2E-15 1.5E-19 113.1 9.8 78 3-113 9-88 (759)
34 KOG0113|consensus 99.6 9.9E-15 2.2E-19 105.9 9.3 79 4-111 101-179 (335)
35 KOG4207|consensus 99.6 4.3E-15 9.3E-20 103.1 7.0 82 2-112 11-92 (256)
36 smart00362 RRM_2 RNA recogniti 99.6 3E-14 6.5E-19 82.8 9.5 72 6-108 1-72 (72)
37 KOG0125|consensus 99.6 1E-14 2.2E-19 107.0 8.2 80 3-113 95-174 (376)
38 KOG0146|consensus 99.6 4.7E-15 1E-19 106.6 6.1 94 3-125 18-113 (371)
39 PLN03121 nucleic acid binding 99.6 6.7E-14 1.5E-18 99.7 11.1 75 4-111 5-79 (243)
40 KOG0111|consensus 99.5 6.4E-15 1.4E-19 103.3 4.1 85 2-115 8-92 (298)
41 KOG0126|consensus 99.5 2E-15 4.3E-20 102.9 1.1 84 4-116 35-118 (219)
42 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.8E-18 98.5 10.3 80 4-112 115-194 (306)
43 KOG0105|consensus 99.5 4E-14 8.7E-19 97.0 6.8 79 3-113 5-83 (241)
44 KOG0124|consensus 99.5 4.8E-14 1E-18 105.2 7.5 108 4-114 113-291 (544)
45 KOG0108|consensus 99.5 8E-14 1.7E-18 107.5 8.6 86 5-119 19-104 (435)
46 smart00360 RRM RNA recognition 99.5 2.2E-13 4.7E-18 78.8 8.5 71 9-108 1-71 (71)
47 KOG0127|consensus 99.5 2.6E-13 5.6E-18 105.4 11.2 112 6-117 119-382 (678)
48 KOG0130|consensus 99.5 5.9E-14 1.3E-18 91.6 6.4 81 6-115 74-154 (170)
49 KOG0114|consensus 99.5 3E-13 6.6E-18 84.6 9.0 79 4-114 18-96 (124)
50 KOG0144|consensus 99.5 4.6E-14 1E-18 106.8 6.1 50 4-53 124-180 (510)
51 cd00590 RRM RRM (RNA recogniti 99.5 7.8E-13 1.7E-17 77.1 10.0 74 6-109 1-74 (74)
52 KOG0110|consensus 99.5 1.5E-13 3.2E-18 109.1 8.1 108 4-114 515-694 (725)
53 KOG0123|consensus 99.4 1.1E-12 2.4E-17 99.9 11.0 104 5-117 2-157 (369)
54 KOG4206|consensus 99.4 6E-13 1.3E-17 93.4 8.2 83 1-115 6-92 (221)
55 KOG0123|consensus 99.4 1.7E-12 3.7E-17 98.8 10.5 109 6-117 78-250 (369)
56 TIGR01645 half-pint poly-U bin 99.4 6.7E-12 1.4E-16 100.4 14.0 50 4-53 204-261 (612)
57 PF13893 RRM_5: RNA recognitio 99.4 2.6E-12 5.6E-17 72.7 8.3 56 21-110 1-56 (56)
58 KOG4205|consensus 99.4 4.9E-13 1.1E-17 99.3 6.7 112 3-117 5-180 (311)
59 KOG0132|consensus 99.3 7.3E-12 1.6E-16 100.5 8.5 79 4-117 421-499 (894)
60 KOG0153|consensus 99.3 1.1E-11 2.4E-16 91.8 8.1 76 3-112 227-302 (377)
61 smart00361 RRM_1 RNA recogniti 99.3 3E-11 6.6E-16 71.4 7.8 62 18-108 2-70 (70)
62 KOG0146|consensus 99.2 2.4E-11 5.2E-16 87.6 5.5 85 3-116 284-368 (371)
63 KOG4661|consensus 99.2 1.1E-10 2.4E-15 91.6 7.6 84 4-116 405-488 (940)
64 KOG0415|consensus 99.1 1.2E-10 2.7E-15 86.8 6.5 80 4-112 239-318 (479)
65 KOG0106|consensus 99.1 6.9E-11 1.5E-15 83.5 5.0 103 5-109 2-167 (216)
66 KOG0147|consensus 99.1 8.7E-11 1.9E-15 91.3 5.6 111 4-116 179-361 (549)
67 TIGR01659 sex-lethal sex-letha 99.1 2.2E-10 4.8E-15 86.8 7.2 51 4-54 193-251 (346)
68 KOG4208|consensus 99.1 6.5E-10 1.4E-14 77.3 7.9 81 4-113 49-130 (214)
69 KOG0147|consensus 99.1 6.7E-10 1.4E-14 86.5 7.7 48 6-53 280-335 (549)
70 KOG0110|consensus 99.0 4.4E-09 9.6E-14 84.1 11.5 105 5-111 386-596 (725)
71 KOG4212|consensus 99.0 2.3E-09 4.9E-14 82.0 8.7 79 3-111 43-122 (608)
72 KOG4212|consensus 98.9 3.1E-09 6.8E-14 81.3 7.1 74 3-110 535-608 (608)
73 KOG1190|consensus 98.9 2.5E-09 5.4E-14 81.1 6.1 103 4-111 28-226 (492)
74 KOG0151|consensus 98.9 4.1E-09 8.9E-14 84.4 6.7 82 4-111 174-255 (877)
75 KOG1456|consensus 98.9 1.7E-08 3.7E-13 76.0 9.4 109 4-114 31-200 (494)
76 KOG1548|consensus 98.9 5.6E-09 1.2E-13 77.6 6.6 90 4-115 134-223 (382)
77 KOG0116|consensus 98.9 7.5E-09 1.6E-13 79.8 7.5 80 5-114 289-368 (419)
78 KOG1457|consensus 98.8 4.6E-08 9.9E-13 69.2 8.8 86 4-115 34-120 (284)
79 KOG0533|consensus 98.8 7.5E-08 1.6E-12 69.4 9.0 83 3-115 82-164 (243)
80 KOG0124|consensus 98.8 1.1E-07 2.3E-12 71.7 9.8 50 4-53 210-267 (544)
81 KOG4211|consensus 98.7 2.9E-07 6.4E-12 71.3 11.8 103 2-110 8-179 (510)
82 KOG0109|consensus 98.7 6.7E-09 1.5E-13 75.8 2.8 50 4-53 78-127 (346)
83 KOG4660|consensus 98.7 1.4E-08 3E-13 79.4 4.6 70 3-106 74-143 (549)
84 PF11608 Limkain-b1: Limkain b 98.7 3.6E-07 7.7E-12 55.4 8.4 70 5-113 3-77 (90)
85 KOG4209|consensus 98.6 7.1E-08 1.5E-12 69.4 5.9 81 3-113 100-180 (231)
86 PF04059 RRM_2: RNA recognitio 98.6 7.6E-07 1.6E-11 55.8 9.0 83 4-113 1-87 (97)
87 KOG0120|consensus 98.5 9.7E-07 2.1E-11 69.3 9.6 106 4-111 289-490 (500)
88 KOG0226|consensus 98.5 1.5E-07 3.2E-12 67.6 4.6 82 4-114 190-271 (290)
89 KOG1190|consensus 98.5 1.2E-06 2.7E-11 66.7 9.4 75 4-112 297-372 (492)
90 PF08777 RRM_3: RNA binding mo 98.4 1.1E-06 2.5E-11 55.9 6.7 72 5-109 2-76 (105)
91 KOG4454|consensus 98.4 1.1E-07 2.4E-12 67.0 1.9 77 4-111 9-85 (267)
92 KOG4205|consensus 98.3 1E-06 2.2E-11 65.9 4.6 50 4-53 97-154 (311)
93 KOG0129|consensus 98.2 6.1E-06 1.3E-10 64.5 8.0 89 4-92 259-432 (520)
94 KOG1457|consensus 98.2 2.3E-06 5E-11 60.7 4.3 62 4-96 210-271 (284)
95 KOG4206|consensus 98.1 2.1E-05 4.6E-10 55.7 8.0 75 4-111 146-220 (221)
96 KOG4210|consensus 97.9 8.8E-06 1.9E-10 60.4 3.3 84 4-117 184-268 (285)
97 KOG0112|consensus 97.9 5.1E-06 1.1E-10 68.5 1.5 109 4-115 372-533 (975)
98 KOG1995|consensus 97.8 3.7E-05 8.1E-10 57.8 4.8 92 3-115 65-156 (351)
99 KOG0120|consensus 97.8 5.2E-05 1.1E-09 59.8 5.8 106 4-112 175-368 (500)
100 KOG3152|consensus 97.8 2.9E-05 6.3E-10 56.1 3.6 84 4-104 74-157 (278)
101 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 40.5 5.4 32 5-37 2-33 (53)
102 KOG1365|consensus 97.7 0.00021 4.6E-09 54.5 7.5 102 6-109 163-358 (508)
103 KOG0128|consensus 97.7 2.6E-06 5.7E-11 69.8 -2.9 107 5-113 668-815 (881)
104 COG5175 MOT2 Transcriptional r 97.7 0.00019 4.1E-09 54.0 7.0 79 6-111 116-201 (480)
105 KOG2193|consensus 97.6 3.9E-05 8.4E-10 59.1 3.0 78 5-117 2-80 (584)
106 KOG4211|consensus 97.6 0.00045 9.7E-09 54.0 8.6 50 4-53 103-160 (510)
107 KOG0131|consensus 97.6 0.00015 3.4E-09 50.0 4.6 42 68-111 46-87 (203)
108 KOG1548|consensus 97.5 0.00066 1.4E-08 51.1 8.0 76 3-111 264-350 (382)
109 KOG1855|consensus 97.5 0.00012 2.7E-09 56.3 3.4 77 3-95 230-308 (484)
110 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00087 1.9E-08 42.2 6.3 84 4-111 6-90 (100)
111 KOG2314|consensus 97.3 0.001 2.2E-08 53.0 7.1 75 5-109 59-140 (698)
112 KOG4849|consensus 97.2 0.00031 6.7E-09 53.1 3.5 77 6-111 82-161 (498)
113 KOG4307|consensus 97.2 0.0021 4.6E-08 52.5 7.5 74 5-108 868-942 (944)
114 KOG1456|consensus 97.0 0.0065 1.4E-07 46.5 8.5 74 4-111 287-361 (494)
115 KOG1996|consensus 96.7 0.0077 1.7E-07 44.7 6.8 66 18-111 300-365 (378)
116 KOG4676|consensus 96.7 0.005 1.1E-07 47.3 5.9 85 3-114 6-91 (479)
117 KOG2416|consensus 96.6 0.0029 6.2E-08 50.8 4.0 49 4-53 444-496 (718)
118 KOG2202|consensus 96.4 0.0023 4.9E-08 46.4 2.1 62 20-111 84-146 (260)
119 KOG0106|consensus 96.3 0.0025 5.4E-08 45.4 2.2 51 4-54 99-149 (216)
120 PF15023 DUF4523: Protein of u 96.2 0.065 1.4E-06 35.9 8.1 73 4-113 86-162 (166)
121 KOG0115|consensus 96.2 0.0091 2E-07 43.4 4.3 64 5-96 32-95 (275)
122 PF08675 RNA_bind: RNA binding 96.1 0.058 1.3E-06 32.8 7.0 57 3-95 8-64 (87)
123 KOG4574|consensus 96.0 0.0054 1.2E-07 51.1 2.6 75 6-113 300-374 (1007)
124 KOG0129|consensus 95.7 0.028 6.1E-07 44.5 5.6 51 3-53 369-428 (520)
125 PF10309 DUF2414: Protein of u 95.5 0.16 3.4E-06 29.1 6.9 55 4-93 5-62 (62)
126 PF04847 Calcipressin: Calcipr 95.4 0.075 1.6E-06 37.1 6.4 63 17-114 8-72 (184)
127 PF08952 DUF1866: Domain of un 94.7 0.24 5.3E-06 33.2 6.9 54 20-111 52-105 (146)
128 KOG0105|consensus 94.7 0.39 8.5E-06 33.7 8.0 65 6-104 117-181 (241)
129 KOG4307|consensus 94.6 0.026 5.7E-07 46.4 2.4 75 5-109 435-510 (944)
130 KOG2068|consensus 94.2 0.024 5.3E-07 42.6 1.4 81 6-112 79-162 (327)
131 KOG2591|consensus 94.0 0.14 3E-06 41.3 5.3 69 3-105 174-244 (684)
132 PF07576 BRAP2: BRCA1-associat 93.8 1.1 2.4E-05 28.7 9.5 66 4-98 12-79 (110)
133 PF03880 DbpA: DbpA RNA bindin 93.4 0.87 1.9E-05 26.7 7.0 59 14-110 11-74 (74)
134 KOG0112|consensus 93.2 0.11 2.4E-06 43.9 3.6 50 4-53 455-506 (975)
135 KOG4660|consensus 93.0 0.32 6.8E-06 39.1 5.8 46 69-114 427-474 (549)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 92.8 0.17 3.6E-06 35.1 3.6 85 4-111 7-96 (176)
137 KOG0128|consensus 92.6 0.073 1.6E-06 44.6 1.9 49 5-53 737-792 (881)
138 KOG1365|consensus 92.2 1.2 2.7E-05 34.5 7.9 88 7-95 63-228 (508)
139 KOG2253|consensus 91.4 0.12 2.5E-06 42.3 1.8 68 4-109 40-107 (668)
140 KOG0804|consensus 91.2 0.92 2E-05 35.8 6.3 65 4-98 74-140 (493)
141 smart00361 RRM_1 RNA recogniti 90.8 0.24 5.3E-06 28.6 2.3 32 24-55 15-54 (70)
142 KOG0125|consensus 90.7 0.22 4.8E-06 37.7 2.5 45 20-64 115-168 (376)
143 KOG2135|consensus 90.6 0.23 4.9E-06 39.3 2.6 66 11-112 379-445 (526)
144 KOG4285|consensus 89.3 2.9 6.4E-05 31.5 7.3 50 9-92 202-251 (350)
145 KOG4410|consensus 88.5 0.85 1.8E-05 34.1 4.1 27 5-31 331-357 (396)
146 KOG4210|consensus 87.4 0.46 9.9E-06 35.5 2.2 76 4-108 88-163 (285)
147 PF00076 RRM_1: RNA recognitio 87.2 0.61 1.3E-05 26.1 2.3 20 37-56 38-57 (70)
148 KOG0149|consensus 87.0 0.49 1.1E-05 34.2 2.1 17 38-54 54-70 (247)
149 KOG0122|consensus 86.4 1 2.2E-05 32.9 3.4 36 19-54 207-247 (270)
150 PLN03134 glycine-rich RNA-bind 86.2 0.69 1.5E-05 30.9 2.4 19 37-55 75-93 (144)
151 PF04059 RRM_2: RNA recognitio 85.2 1.4 3.1E-05 27.5 3.3 47 38-89 45-92 (97)
152 KOG0107|consensus 85.2 1 2.2E-05 31.4 2.8 35 19-53 28-62 (195)
153 KOG4208|consensus 85.1 0.74 1.6E-05 32.7 2.2 16 38-53 92-107 (214)
154 KOG0121|consensus 79.4 1.3 2.8E-05 29.3 1.6 20 36-55 76-95 (153)
155 PLN03120 nucleic acid binding 76.4 2.5 5.4E-05 31.2 2.5 19 37-55 42-60 (260)
156 KOG0113|consensus 75.9 3.9 8.5E-05 30.8 3.4 34 22-55 122-160 (335)
157 KOG4676|consensus 75.1 0.6 1.3E-05 36.2 -1.0 58 4-92 151-208 (479)
158 KOG2891|consensus 74.2 3 6.5E-05 31.2 2.4 34 4-37 149-194 (445)
159 KOG2318|consensus 71.6 21 0.00046 29.4 6.7 103 4-110 174-305 (650)
160 PF11767 SET_assoc: Histone ly 71.2 9.2 0.0002 22.1 3.6 30 76-107 36-65 (66)
161 KOG0111|consensus 71.2 4.6 0.0001 29.2 2.7 27 38-64 52-84 (298)
162 KOG4207|consensus 70.8 4.5 9.8E-05 29.0 2.6 38 19-56 31-73 (256)
163 PF02714 DUF221: Domain of unk 68.6 8.4 0.00018 28.8 3.8 36 76-115 1-36 (325)
164 KOG4008|consensus 67.6 4.1 9E-05 29.6 1.9 34 4-37 40-73 (261)
165 KOG2193|consensus 66.2 0.2 4.4E-06 39.2 -5.2 75 4-110 80-154 (584)
166 PLN03121 nucleic acid binding 61.5 8.7 0.00019 28.1 2.6 37 19-55 23-61 (243)
167 PF15513 DUF4651: Domain of un 61.4 12 0.00027 21.3 2.7 19 19-37 9-27 (62)
168 smart00596 PRE_C2HC PRE_C2HC d 57.3 34 0.00074 20.0 4.1 64 19-114 2-66 (69)
169 PF07292 NID: Nmi/IFP 35 domai 57.2 5.9 0.00013 24.3 1.0 23 4-26 52-74 (88)
170 PF11411 DNA_ligase_IV: DNA li 54.3 11 0.00025 19.1 1.6 17 14-30 19-35 (36)
171 PF14893 PNMA: PNMA 52.7 12 0.00027 28.6 2.3 36 2-37 16-52 (331)
172 PF11823 DUF3343: Protein of u 52.4 44 0.00096 19.2 5.9 59 39-100 2-66 (73)
173 COG0030 KsgA Dimethyladenosine 52.0 24 0.00053 26.0 3.7 32 6-37 97-128 (259)
174 PF10567 Nab6_mRNP_bdg: RNA-re 50.5 11 0.00024 28.3 1.7 36 4-39 15-50 (309)
175 PF03439 Spt5-NGN: Early trans 47.4 32 0.00069 20.6 3.1 26 70-95 41-66 (84)
176 KOG4483|consensus 46.7 48 0.001 26.3 4.6 54 5-58 392-447 (528)
177 KOG0132|consensus 43.8 67 0.0014 27.7 5.3 69 39-111 458-543 (894)
178 PF03468 XS: XS domain; Inter 42.9 44 0.00094 21.5 3.4 18 16-33 29-46 (116)
179 COG0724 RNA-binding proteins ( 41.4 43 0.00093 23.1 3.6 35 3-37 224-258 (306)
180 PF15407 Spo7_2_N: Sporulation 41.3 9.3 0.0002 22.2 0.1 24 3-26 26-49 (67)
181 KOG0108|consensus 40.8 30 0.00065 27.6 2.8 17 37-53 59-75 (435)
182 KOG4019|consensus 39.9 33 0.00072 24.1 2.6 39 73-113 51-90 (193)
183 PF07530 PRE_C2HC: Associated 38.8 78 0.0017 18.2 4.5 41 69-114 26-66 (68)
184 TIGR03636 L23_arch archaeal ri 37.5 90 0.002 18.5 5.0 32 6-37 15-48 (77)
185 PRK14548 50S ribosomal protein 36.9 98 0.0021 18.7 4.9 32 6-37 22-55 (84)
186 PF00398 RrnaAD: Ribosomal RNA 33.8 54 0.0012 23.9 3.1 33 4-36 97-131 (262)
187 PHA01632 hypothetical protein 31.1 60 0.0013 18.2 2.3 21 7-27 19-39 (64)
188 PF13046 DUF3906: Protein of u 29.6 97 0.0021 17.8 3.0 20 18-37 32-51 (64)
189 PF00313 CSD: 'Cold-shock' DNA 29.5 36 0.00078 19.0 1.3 17 29-45 3-19 (66)
190 PRK00274 ksgA 16S ribosomal RN 29.2 89 0.0019 22.9 3.6 32 6-37 107-138 (272)
191 TIGR02381 cspD cold shock doma 28.4 41 0.00089 19.2 1.4 17 29-45 4-20 (68)
192 PRK09507 cspE cold shock prote 28.2 40 0.00086 19.4 1.3 17 29-45 6-22 (69)
193 PF14097 SpoVAE: Stage V sporu 27.9 91 0.002 21.7 3.2 40 84-126 10-49 (180)
194 cd04458 CSP_CDS Cold-Shock Pro 27.6 44 0.00096 18.5 1.5 17 29-45 3-19 (65)
195 PRK15464 cold shock-like prote 27.6 38 0.00083 19.6 1.2 17 29-45 7-23 (70)
196 COG3102 Uncharacterized protei 27.3 1E+02 0.0023 21.4 3.4 100 16-117 51-155 (185)
197 PTZ00338 dimethyladenosine tra 27.3 90 0.002 23.4 3.4 31 7-37 104-134 (294)
198 smart00457 MACPF membrane-atta 27.0 1.5E+02 0.0032 20.5 4.3 28 10-37 31-60 (194)
199 PRK14998 cold shock-like prote 26.8 48 0.001 19.4 1.5 17 29-45 4-20 (73)
200 PRK10943 cold shock-like prote 26.5 44 0.00096 19.2 1.3 16 29-44 6-21 (69)
201 PF10281 Ish1: Putative stress 26.0 80 0.0017 15.7 2.1 19 15-33 3-21 (38)
202 PRK09937 stationary phase/star 25.9 50 0.0011 19.4 1.5 17 29-45 4-20 (74)
203 PHA01782 hypothetical protein 25.8 55 0.0012 22.5 1.8 23 11-33 62-84 (177)
204 PF08206 OB_RNB: Ribonuclease 25.8 15 0.00033 20.3 -0.7 38 71-111 6-44 (58)
205 PRK15463 cold shock-like prote 25.4 46 0.00099 19.3 1.2 17 29-45 7-23 (70)
206 COG4009 Uncharacterized protei 24.5 1E+02 0.0023 18.6 2.6 25 6-30 50-74 (88)
207 PTZ00059 dynein light chain; P 23.7 1.3E+02 0.0029 18.2 3.1 23 19-41 41-64 (90)
208 PF09707 Cas_Cas2CT1978: CRISP 23.7 1.8E+02 0.0039 17.7 4.2 22 5-26 26-47 (86)
209 KOG2416|consensus 23.7 1.6E+02 0.0034 24.8 4.3 44 68-111 476-520 (718)
210 PRK09890 cold shock protein Cs 23.3 53 0.0011 18.9 1.2 17 29-45 7-23 (70)
211 PF11113 Phage_head_chap: Head 23.2 1.5E+02 0.0033 16.6 3.1 24 99-122 23-46 (56)
212 TIGR02542 B_forsyth_147 Bacter 23.0 1.1E+02 0.0023 20.0 2.7 25 11-37 10-34 (145)
213 PRK10354 RNA chaperone/anti-te 22.9 54 0.0012 18.9 1.2 17 29-45 7-23 (70)
214 TIGR00755 ksgA dimethyladenosi 22.6 1.3E+02 0.0029 21.6 3.5 24 7-30 97-120 (253)
215 KOG0862|consensus 22.5 67 0.0014 23.1 1.8 22 27-48 98-119 (216)
216 cd00027 BRCT Breast Cancer Sup 21.9 1.4E+02 0.003 15.6 4.5 26 5-30 2-27 (72)
217 PF15063 TC1: Thyroid cancer p 21.3 67 0.0015 19.2 1.4 27 5-31 26-52 (79)
218 PF14112 DUF4284: Domain of un 21.2 1.1E+02 0.0025 19.6 2.6 38 5-45 2-43 (122)
219 KOG1552|consensus 20.8 2.4E+02 0.0052 20.9 4.4 59 20-105 75-139 (258)
220 cd01611 GABARAP Ubiquitin doma 20.6 2.1E+02 0.0045 18.2 3.7 36 6-49 73-109 (112)
221 smart00650 rADc Ribosomal RNA 20.1 2.1E+02 0.0045 19.0 3.9 23 6-28 79-101 (169)
No 1
>KOG0117|consensus
Probab=99.94 E-value=5.4e-26 Score=171.08 Aligned_cols=125 Identities=43% Similarity=0.851 Sum_probs=118.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
.-|.||||.||.++.|++|..||++.|+|.++++| ||||||+|++.+.|+.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 35789999999999999999999999999999998 8999999999999988
Q ss_pred ---------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEE
Q psy1185 54 ---------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106 (131)
Q Consensus 54 ---------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~ 106 (131)
..|+..++++..+....++||||||+|.+|..|..|.+.|-...+.++|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 46899999999999999999999999999999999999998878999999999
Q ss_pred EEecCCCCCCChHHHHhHhhh
Q psy1185 107 VDWADPQEEPDTETMSKVLML 127 (131)
Q Consensus 107 v~~a~~~~~~~~~~~~~~~~~ 127 (131)
|+||.|+.+++.+.|+++|.|
T Consensus 242 VdWAep~~e~ded~ms~VKvL 262 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVL 262 (506)
T ss_pred eeccCcccCCChhhhhheeee
Confidence 999999999999999999976
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=2.2e-21 Score=153.59 Aligned_cols=121 Identities=40% Similarity=0.776 Sum_probs=100.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHhhc---------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITVT--------------------- 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~~~--------------------- 55 (131)
.++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|+.+.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 5799999999999999999999999999999986 799999999999999810
Q ss_pred ---------------------------CCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEE
Q psy1185 56 ---------------------------GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 56 ---------------------------g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~ 108 (131)
++..++++..+...+++++||||+|.++++|.+|++.|+...+.++|+.|.|+
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 22233333334445678999999999999999999999876678999999999
Q ss_pred ecCCCCCCChHHHHhH
Q psy1185 109 WADPQEEPDTETMSKV 124 (131)
Q Consensus 109 ~a~~~~~~~~~~~~~~ 124 (131)
|+.+..+.+++.++..
T Consensus 218 wA~p~~~~d~~~~~~~ 233 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKV 233 (578)
T ss_pred eecccccccccccccc
Confidence 9998877766655543
No 3
>KOG0144|consensus
Probab=99.86 E-value=2.3e-21 Score=145.86 Aligned_cols=116 Identities=29% Similarity=0.534 Sum_probs=101.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.-++|||.+|+.++|.+|+++|++||.|.+|.++ +|||||.|...++|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3479999999999999999999999999999988 7999999999999988
Q ss_pred ---------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcce
Q psy1185 54 ---------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK 99 (131)
Q Consensus 54 ---------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 99 (131)
.+| |+.+.+..++ .+.+||||||.|.+++-|..|++.|||. .+
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~-~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGT-QT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc--cccccceeEEEEehHHHHHHHHHhhccc-ee
Confidence 356 5555555555 5889999999999999999999999996 48
Q ss_pred ecCcE--EEEEecCCCCCCChHHHH
Q psy1185 100 VWGCD--IIVDWADPQEEPDTETMS 122 (131)
Q Consensus 100 ~~g~~--l~v~~a~~~~~~~~~~~~ 122 (131)
+.||. |.|+||+++++++.+.++
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lq 215 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQ 215 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHH
Confidence 88986 999999999988876653
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=1.4e-20 Score=141.99 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=91.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
..++|||+|||+++++++|+++|++||+|.+|+++ ++||||+|.++++|+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 46799999999999999999999999999999987 4899999999999988
Q ss_pred ------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecC
Q psy1185 54 ------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG 102 (131)
Q Consensus 54 ------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g 102 (131)
.+| +..+.+..+ ..+++++++|||+|.++++|++|++.|++..+...+
T Consensus 186 p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 186 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 223 222333322 237888999999999999999999999998333344
Q ss_pred cEEEEEecCCCCCC
Q psy1185 103 CDIIVDWADPQEEP 116 (131)
Q Consensus 103 ~~l~v~~a~~~~~~ 116 (131)
+.|+|.||+.+...
T Consensus 265 ~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 265 QPLTVRLAEEHGKA 278 (346)
T ss_pred eeEEEEECCccccc
Confidence 78999999876543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=2.9e-20 Score=147.69 Aligned_cols=111 Identities=21% Similarity=0.372 Sum_probs=93.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh--------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV-------------------- 54 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~-------------------- 54 (131)
..++|||||||+++++++|+++|++||+|.+++++ +|||||+|.+.++|+.+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999986 89999999999999981
Q ss_pred ------------------------------------------cC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHH
Q psy1185 55 ------------------------------------------TG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKK 91 (131)
Q Consensus 55 ------------------------------------------~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 91 (131)
+| +..+.+..++ .++.++|||||+|.+.++|.+|+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~-~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCcCCeEEEEECCHHHHHHHHH
Confidence 22 1222222222 356789999999999999999999
Q ss_pred HHhCCcceecCcEEEEEecCCCCCC
Q psy1185 92 RLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 92 ~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.+|+. .++|+.|+|.++.++++.
T Consensus 265 amNg~--elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 265 SMNLF--DLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HhCCC--eeCCeEEEEEecCCCccc
Confidence 99997 899999999999875543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.84 E-value=7.6e-20 Score=137.78 Aligned_cols=110 Identities=25% Similarity=0.367 Sum_probs=89.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh--------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV-------------------- 54 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~-------------------- 54 (131)
..++|||+|||.++++++|+++|++||+|.+++++ +|||||+|.+.++|+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999997 48999999999999981
Q ss_pred -------------------------------cC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecC
Q psy1185 55 -------------------------------TG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG 102 (131)
Q Consensus 55 -------------------------------~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g 102 (131)
+| +..+.+..+ ..++.++|||||+|.+.++|..|++.|+|. .+.|
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~--~~~g 158 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGT--TPSG 158 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCC--ccCC
Confidence 11 111111111 135678999999999999999999999998 5555
Q ss_pred --cEEEEEecCCCCC
Q psy1185 103 --CDIIVDWADPQEE 115 (131)
Q Consensus 103 --~~l~v~~a~~~~~ 115 (131)
..|.|.|+..+..
T Consensus 159 ~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 159 CTEPITVKFANNPSS 173 (352)
T ss_pred CceeEEEEECCCCCc
Confidence 5689999986653
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.1e-19 Score=122.00 Aligned_cols=84 Identities=24% Similarity=0.416 Sum_probs=76.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++.++.. ..++.+++||||+|.+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d---------------------------~~tg~~kGfaFV~F~~ 85 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD---------------------------RETGRSRGFGFVNFND 85 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec---------------------------CCCCCcceEEEEEECC
Confidence 3678999999999999999999999999999998854 3478899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|+.|++.|++. .++|+.|+|+|+.++..
T Consensus 86 ~e~A~~Al~~lng~--~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 86 EGAATAAISEMDGK--ELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHHHHHHHHHcCCC--EECCEEEEEEeCCcCCC
Confidence 99999999999998 89999999999987654
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.80 E-value=1.9e-18 Score=134.32 Aligned_cols=107 Identities=26% Similarity=0.433 Sum_probs=89.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh---------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV--------------------- 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~--------------------- 54 (131)
.++|||+|||..+++++|+++|++||.|..+.++ +|||||+|.+.++|..+
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 5789999999999999999999999999999987 68999999999999772
Q ss_pred -----------------------------------------cC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHH
Q psy1185 55 -----------------------------------------TG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR 92 (131)
Q Consensus 55 -----------------------------------------~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 92 (131)
+| +..+.+..+. .+|.++|||||+|.+.++|.+|+..
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP-ETGRSKGFGFIQFHDAEEAKEALEV 247 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHHh
Confidence 22 1122222222 3567899999999999999999999
Q ss_pred HhCCcceecCcEEEEEecCCC
Q psy1185 93 LATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 93 l~~~~~~~~g~~l~v~~a~~~ 113 (131)
|+|. .+.|+.|.|.|+...
T Consensus 248 l~g~--~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 248 MNGF--ELAGRPIKVGYAQDS 266 (457)
T ss_pred cCCc--EECCEEEEEEEccCC
Confidence 9997 899999999998743
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=2.5e-18 Score=129.54 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=75.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
.+|||+|||+++++++|+++|++||.|.++++++. ..++.++|||||.|.+.+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d---------------------------~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRD---------------------------LTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEc---------------------------CCCCCccceEEEEECCHH
Confidence 36999999999999999999999999999999854 347889999999999999
Q ss_pred hHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 85 SASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 85 ~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+|.+|+..|||. .++|+.|+|.|+.++..
T Consensus 323 ~A~~Ai~~lnG~--~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 323 EAAMAILSLNGY--TLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHhCCC--EECCeEEEEEEccCCCC
Confidence 999999999998 89999999999988764
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.77 E-value=8.3e-18 Score=133.96 Aligned_cols=107 Identities=26% Similarity=0.423 Sum_probs=89.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh-----------------------
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV----------------------- 54 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~----------------------- 54 (131)
+|||||||.++|+++|+++|++||+|.+++++ +|||||+|.+.++|+++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999997 48999999999999991
Q ss_pred ------------------------------cC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCc
Q psy1185 55 ------------------------------TG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103 (131)
Q Consensus 55 ------------------------------~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~ 103 (131)
+| +..+.+.. ...|+++|||||+|.+.++|.+|+..++|. .+.|+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~--~~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~~ 157 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVAT--DENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLNDK 157 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeee--cCCCCcccEEEEEECCHHHHHHHHHHhccc--EecCc
Confidence 12 22222222 235778999999999999999999999998 88999
Q ss_pred EEEEEecCCCCCC
Q psy1185 104 DIIVDWADPQEEP 116 (131)
Q Consensus 104 ~l~v~~a~~~~~~ 116 (131)
.|.|.....+.++
T Consensus 158 ~i~v~~~~~~~~~ 170 (562)
T TIGR01628 158 EVYVGRFIKKHER 170 (562)
T ss_pred eEEEecccccccc
Confidence 9999877655544
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.77 E-value=9.1e-18 Score=131.74 Aligned_cols=111 Identities=30% Similarity=0.353 Sum_probs=85.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHhhc------C--CceeEE-----------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITVT------G--LSQVII----------- 62 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~~~------g--~~~~~~----------- 62 (131)
+++|||+|||+++++++|+++|++||.|.++.++ ++||||+|.+.++|+.+. + +.++.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 5799999999999999999999999999999988 689999999999998821 0 111111
Q ss_pred ------------------ecC-CC-----------------------CCCCCcceEEEEeCCHHhHHHHHHHHhCCccee
Q psy1185 63 ------------------YSS-PD-----------------------DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV 100 (131)
Q Consensus 63 ------------------~~~-~~-----------------------~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~ 100 (131)
++. +. .....+++|||+|.+.++|.+|+..|||..+.-
T Consensus 82 ~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 82 RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 100 00 011124689999999999999999999994322
Q ss_pred cCcEEEEEecCCCC
Q psy1185 101 WGCDIIVDWADPQE 114 (131)
Q Consensus 101 ~g~~l~v~~a~~~~ 114 (131)
+++.|+|.|+++..
T Consensus 162 ~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 162 GCCTLKIEYAKPTR 175 (481)
T ss_pred CceEEEEEEecCCC
Confidence 34689999998643
No 12
>KOG0109|consensus
Probab=99.77 E-value=8.7e-19 Score=126.57 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=91.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcC------CceeEEecCCC-----------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTG------LSQVIIYSSPD----------- 67 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g------~~~~~~~~~~~----------- 67 (131)
.++||||||..+++.+|+.||++||.|.+|.|+++||||+.++...|+.+.. +++..+-+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~ 82 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLH 82 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccc
Confidence 4799999999999999999999999999999999999999999988877211 22222111000
Q ss_pred ------------------------CCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCChH
Q psy1185 68 ------------------------DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119 (131)
Q Consensus 68 ------------------------~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~~ 119 (131)
....-++|+||+|.-.++|..|++.|++. .+.|++++|+.+.++..+.+.
T Consensus 83 vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~--~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 83 VGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNT--EFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred cCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhccccc--ccccceeeeeeeccccccCCC
Confidence 12235899999999999999999999998 899999999998877655443
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.77 E-value=1.3e-17 Score=132.75 Aligned_cols=109 Identities=26% Similarity=0.489 Sum_probs=91.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHhhc---------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITVT--------------------- 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~~~--------------------- 55 (131)
.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..+.
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~ 257 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGR 257 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeec
Confidence 4679999999999999999999999999999887 679999999999998721
Q ss_pred ----------------------------------------------------C-CceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 56 ----------------------------------------------------G-LSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 56 ----------------------------------------------------g-~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
| +..+.+..+ .+|.++|||||+|.+
T Consensus 258 a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 258 AQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EKGVSRGFGFVCFSN 335 (562)
T ss_pred ccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCCeEEEEeCC
Confidence 1 111222222 467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..+||. .++|+.|.|.||..+.++
T Consensus 336 ~~~A~~A~~~~~g~--~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 336 PEEANRAVTEMHGR--MLGGKPLYVALAQRKEQR 367 (562)
T ss_pred HHHHHHHHHHhcCC--eeCCceeEEEeccCcHHH
Confidence 99999999999998 899999999999876644
No 14
>KOG0131|consensus
Probab=99.74 E-value=1.8e-17 Score=112.77 Aligned_cols=112 Identities=26% Similarity=0.369 Sum_probs=93.8
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh--------------------
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT-------------------- 53 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~-------------------- 53 (131)
+...|||||||+...+++.|+++|-+.|+|.+++++ +||||++|.++++|+-
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 356799999999999999999999999999999998 7999999999999998
Q ss_pred --------------------------------hcCCc---eeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 54 --------------------------------VTGLS---QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 54 --------------------------------~~g~~---~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
++|.. ..+++ + ..+|.++++||+.|.+.+.+.+|+.+++|.
T Consensus 87 s~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r-d-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq-- 162 (203)
T KOG0131|consen 87 SAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR-D-PDTGNPKGFGFINYASFEASDAAIGSMNGQ-- 162 (203)
T ss_pred ccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccc-c-ccCCCCCCCeEEechhHHHHHHHHHHhccc--
Confidence 23311 11111 1 246889999999999999999999999998
Q ss_pred eecCcEEEEEecCCCCCCC
Q psy1185 99 KVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~ 117 (131)
.+..++++|.|+..+....
T Consensus 163 ~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhcCCceEEEEEEecCCCc
Confidence 8889999999997655443
No 15
>KOG0122|consensus
Probab=99.73 E-value=2.5e-17 Score=116.50 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=76.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.+++|=|.|||.++++++|.+||.+||.|.++++.++ +.+|.++|||||.|.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard---------------------------K~TG~~kGFAFVtF~s 240 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD---------------------------KETGLSKGFAFVTFES 240 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEc---------------------------cccCcccceEEEEEec
Confidence 3568999999999999999999999999999999976 6799999999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
+++|++|++.|+|. .++.-.|+|+|++|+
T Consensus 241 RddA~rAI~~LnG~--gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 241 RDDAARAIADLNGY--GYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHHHHHHccCc--ccceEEEEEEecCCC
Confidence 99999999999997 788889999999986
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.73 E-value=1.4e-16 Score=125.40 Aligned_cols=107 Identities=25% Similarity=0.419 Sum_probs=84.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc--------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT-------------------- 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~-------------------- 55 (131)
.++|||+|||..+++++|+++|++||.|..+.++ +|||||+|.+.++|..+.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4689999999999999999999999999999886 699999999999988710
Q ss_pred ---------------------------------------------------------------------C-CceeEEecC
Q psy1185 56 ---------------------------------------------------------------------G-LSQVIIYSS 65 (131)
Q Consensus 56 ---------------------------------------------------------------------g-~~~~~~~~~ 65 (131)
| +..+.+...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 375 GANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRP 454 (509)
T ss_pred CCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeecc
Confidence 0 000011100
Q ss_pred C--CCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 66 P--DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 66 ~--~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
. ..++...|++||+|.+.++|.+|+..|||. .++|+.|.|.|...
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFNDRVVVAAFYGE 501 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEeCH
Confidence 0 012334689999999999999999999998 89999999999653
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=5.7e-17 Score=95.13 Aligned_cols=70 Identities=36% Similarity=0.650 Sum_probs=64.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhH
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSA 86 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a 86 (131)
|||+|||.++++++|+++|++||.+..+.+... .++..+++|||+|.++++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~----------------------------~~~~~~~~a~V~F~~~~~a 52 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN----------------------------SSGKSKGYAFVEFESEEDA 52 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE----------------------------TTSSEEEEEEEEESSHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc----------------------------ccccccceEEEEEcCHHHH
Confidence 799999999999999999999999999988742 3678899999999999999
Q ss_pred HHHHHHHhCCcceecCcEEE
Q psy1185 87 SLAKKRLATGRLKVWGCDII 106 (131)
Q Consensus 87 ~~a~~~l~~~~~~~~g~~l~ 106 (131)
.+|+..++|. .++|+.|+
T Consensus 53 ~~a~~~l~g~--~~~~~~ir 70 (70)
T PF00076_consen 53 EKALEELNGK--KINGRKIR 70 (70)
T ss_dssp HHHHHHHTTE--EETTEEEE
T ss_pred HHHHHHcCCC--EECccCcC
Confidence 9999999998 89998875
No 18
>KOG0145|consensus
Probab=99.72 E-value=4.2e-17 Score=116.61 Aligned_cols=110 Identities=27% Similarity=0.399 Sum_probs=91.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.+.|.|.-||..+|+++++.||++.|+|.+|+++ .|||||+|.++++|++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4578999999999999999999999999999998 6999999999999999
Q ss_pred -----------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCc
Q psy1185 54 -----------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103 (131)
Q Consensus 54 -----------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~ 103 (131)
.+| +.-..+..+ ..+|.++|.|||.|..+.+|..|+..|||. ..-|+
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~--~P~g~ 197 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGC 197 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCC--CCCCC
Confidence 233 221122222 257899999999999999999999999998 66666
Q ss_pred E--EEEEecCCCCCC
Q psy1185 104 D--IIVDWADPQEEP 116 (131)
Q Consensus 104 ~--l~v~~a~~~~~~ 116 (131)
. |.|.||..+...
T Consensus 198 tepItVKFannPsq~ 212 (360)
T KOG0145|consen 198 TEPITVKFANNPSQK 212 (360)
T ss_pred CCCeEEEecCCcccc
Confidence 4 999999876543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=2.9e-16 Score=123.56 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=85.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc------------CCeeEEEEe--cCeEEEEECCHHHHHhhcCCce----------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY------------GRVERVKRI--KDYAFVHFEDRQEAITVTGLSQ---------- 59 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~------------G~v~~~~i~--~~~~fv~~~~~~~a~~~~g~~~---------- 59 (131)
.++|||||||+++++++|+++|+++ +.|..+.+. +|||||+|.+.++|..++.+.+
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v 254 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI 254 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence 5789999999999999999999975 345555554 7999999999999987322110
Q ss_pred -----------------------------------------eEEec--C--------------------------CCCCC
Q psy1185 60 -----------------------------------------VIIYS--S--------------------------PDDNK 70 (131)
Q Consensus 60 -----------------------------------------~~~~~--~--------------------------~~~~~ 70 (131)
..|++ . ...+|
T Consensus 255 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 255 RRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 01111 0 01357
Q ss_pred CCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 71 KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 71 ~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.++|||||+|.+.+.|..|+..|+|. .++|+.|.|.+|...
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVG 375 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccC
Confidence 78999999999999999999999998 899999999998643
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=115.24 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
|+..++|||+|||+.+++++|+++|+.||.|.++.+++. +..++||||+|
T Consensus 1 ~~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d------------------------------~~~~GfAFVtF 50 (260)
T PLN03120 1 VMQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE------------------------------NERSQIAYVTF 50 (260)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec------------------------------CCCCCEEEEEe
Confidence 355789999999999999999999999999999998753 23579999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.++++|..|+. |+|. .++|+.|.|.++..-
T Consensus 51 ~d~eaAe~All-LnG~--~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 51 KDPQGAETALL-LSGA--TIVDQSVTITPAEDY 80 (260)
T ss_pred CcHHHHHHHHH-hcCC--eeCCceEEEEeccCC
Confidence 99999999995 9998 999999999998743
No 21
>KOG0127|consensus
Probab=99.71 E-value=1.4e-16 Score=123.27 Aligned_cols=109 Identities=25% Similarity=0.425 Sum_probs=92.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh-----------------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT----------------------- 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~----------------------- 53 (131)
.||||++||++++.++|.++|+.+|+|..|.++ ||||||+|.-.++++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 899999999999999999999999999999988 8999999999999988
Q ss_pred ------------------------------------------------------hcCCc-eeEEecCCCCCCCCcceEEE
Q psy1185 54 ------------------------------------------------------VTGLS-QVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 54 ------------------------------------------------------~~g~~-~~~~~~~~~~~~~~~~~~fv 78 (131)
.+|-. ++.++ ....|.-.|||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP--~k~dgklcGFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP--RKKDGKLCGFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcc--cCCCCCccceEEE
Confidence 23322 22222 1234555699999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.|.+..+|..|++.+|+. .++|++|.|.||.++..-.
T Consensus 164 ~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EEeeHHHHHHHHHhccCc--eecCceeEEeeeccccccc
Confidence 999999999999999998 9999999999999876543
No 22
>KOG0149|consensus
Probab=99.68 E-value=7.8e-17 Score=113.41 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=71.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.++||||+|+|.|..+.|++.|++||+|.+..++.. +.+|+++|||||+|.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd---------------------------~~t~rskGyGfVTf~d 63 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD---------------------------KNTGRSKGYGFVTFRD 63 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEec---------------------------cCCccccceeeEEeec
Confidence 3579999999999999999999999999999988843 4589999999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++|.+|+..-+- .++||+-.++.|.
T Consensus 64 ~~aa~rAc~dp~p---iIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 64 AEAATRACKDPNP---IIDGRKANCNLAS 89 (247)
T ss_pred HHHHHHHhcCCCC---cccccccccchhh
Confidence 9999999988776 7999998888764
No 23
>KOG0121|consensus
Probab=99.68 E-value=1.7e-16 Score=102.53 Aligned_cols=80 Identities=34% Similarity=0.515 Sum_probs=70.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+++|||||||++.++|+.|.+||+++|+|..+-+-.+ +.+..+-|||||+|.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd---------------------------r~kktpCGFCFVeyy~ 87 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD---------------------------RFKKTPCGFCFVEYYS 87 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc---------------------------cCCcCccceEEEEEec
Confidence 5789999999999999999999999999999754321 2255678999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++|..|++.+++. .++.+.|++.|.-
T Consensus 88 ~~dA~~Alryisgt--rLddr~ir~D~D~ 114 (153)
T KOG0121|consen 88 RDDAEDALRYISGT--RLDDRPIRIDWDA 114 (153)
T ss_pred chhHHHHHHHhccC--cccccceeeeccc
Confidence 99999999999998 8999999999964
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=1.5e-15 Score=119.32 Aligned_cols=108 Identities=27% Similarity=0.325 Sum_probs=85.0
Q ss_pred ceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEe---cCeEEEEECCHHHHHhhc----C--Cce--------------
Q psy1185 4 VKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITVT----G--LSQ-------------- 59 (131)
Q Consensus 4 ~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~---~~~~fv~~~~~~~a~~~~----g--~~~-------------- 59 (131)
.++|||+|||+ .+++++|+++|++||.|.+++++ +|||||+|.+.++|..+. | +.+
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 56999999998 69999999999999999999988 699999999999999910 0 000
Q ss_pred ----------------------------------------eEEecC--CC--------------------------CCCC
Q psy1185 60 ----------------------------------------VIIYSS--PD--------------------------DNKK 71 (131)
Q Consensus 60 ----------------------------------------~~~~~~--~~--------------------------~~~~ 71 (131)
..|+.. +. ..+.
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 111110 00 0112
Q ss_pred CcceEEEEeCCHHhHHHHHHHHhCCcceecCcE------EEEEecCCC
Q psy1185 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD------IIVDWADPQ 113 (131)
Q Consensus 72 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~------l~v~~a~~~ 113 (131)
.+++|||+|.+.++|..|+..||+. .++++. |+|.||+++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~--~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHH--QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCC--ccCCCCCCccceEEEEeccCC
Confidence 3689999999999999999999998 788874 999999875
No 25
>KOG0117|consensus
Probab=99.67 E-value=8e-16 Score=116.56 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=91.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEe---------cCeEEEEECCHHHHHh--------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI---------KDYAFVHFEDRQEAIT-------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~~~i~---------~~~~fv~~~~~~~a~~-------------------- 53 (131)
.+.|||||+|...++++|.+.+++.++ |+.+-+. ||||||+|.++..|..
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 578999999999999999999999987 4444443 8999999999998887
Q ss_pred -----------------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 54 -----------------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 54 -----------------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
.++.++++.++. +.+.||||+|.++++|.+|++.++++
T Consensus 244 WAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk-----k~rDYaFVHf~eR~davkAm~~~ngk-- 316 (506)
T KOG0117|consen 244 WAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVK-----KPRDYAFVHFAEREDAVKAMKETNGK-- 316 (506)
T ss_pred ccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEee-----cccceeEEeecchHHHHHHHHHhcCc--
Confidence 334445554442 34789999999999999999999999
Q ss_pred eecCcEEEEEecCCCCCCChH
Q psy1185 99 KVWGCDIIVDWADPQEEPDTE 119 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~~~ 119 (131)
.++|..|.|.+|+|..+...+
T Consensus 317 eldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 317 ELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred eecCceEEEEecCChhhhccc
Confidence 999999999999998876654
No 26
>KOG0148|consensus
Probab=99.67 E-value=8.9e-16 Score=110.15 Aligned_cols=102 Identities=26% Similarity=0.527 Sum_probs=88.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh-----------------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT----------------------- 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~----------------------- 53 (131)
-.+|||-|...++-+.|++.|.+||+|.+++++ +|||||.|-+.++|++
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 369999999999999999999999999999998 7999999999999999
Q ss_pred --------------------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHH
Q psy1185 54 --------------------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASL 88 (131)
Q Consensus 54 --------------------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 88 (131)
.+| |.++. .-+.+||+||.|.+++.|.+
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVR-------vFk~qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVR-------VFKDQGYAFVRFETKEAAAH 215 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEE-------EecccceEEEEecchhhHHH
Confidence 233 11222 12358999999999999999
Q ss_pred HHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 89 AKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 89 a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
||..+|+. .+.|..+++.|.+....
T Consensus 216 AIv~mNnt--ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNT--EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCc--eeCceEEEEeccccCCC
Confidence 99999999 99999999999986544
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=3e-15 Score=88.27 Aligned_cols=70 Identities=34% Similarity=0.602 Sum_probs=61.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhH
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSA 86 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a 86 (131)
|||+|||+++++++|.++|+.||.|..+++.++ . .+..+++|||+|.+.++|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~---------------------------~-~~~~~~~a~v~f~~~~~a 52 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN---------------------------K-DGQSRGFAFVEFSSEEDA 52 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES---------------------------T-TSSEEEEEEEEESSHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee---------------------------e-ccccCCEEEEEeCCHHHH
Confidence 799999999999999999999999999988854 2 367899999999999999
Q ss_pred HHHHHHHhCCcceecCcEEE
Q psy1185 87 SLAKKRLATGRLKVWGCDII 106 (131)
Q Consensus 87 ~~a~~~l~~~~~~~~g~~l~ 106 (131)
.+|+..+++. .++|+.|.
T Consensus 53 ~~al~~~~~~--~~~g~~l~ 70 (70)
T PF14259_consen 53 KRALELLNGK--EIDGRKLR 70 (70)
T ss_dssp HHHHHHHTTE--EETTEEEE
T ss_pred HHHHHHCCCc--EECCEEcC
Confidence 9999999976 88998874
No 28
>KOG0107|consensus
Probab=99.63 E-value=2.5e-15 Score=101.79 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=70.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++||||||+..+++.||+..|..||++..+-+-+ .+.|||||+|++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------------------------------nPPGfAFVEFed~ 57 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------------------------------NPPGFAFVEFEDP 57 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------------------------------cCCCceEEeccCc
Confidence 67999999999999999999999999999986653 3689999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.+|..|+..|+|+ .+.|..+.|+.+.....
T Consensus 58 RDA~DAvr~LDG~--~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 58 RDAEDAVRYLDGK--DICGSRIRVELSTGRPR 87 (195)
T ss_pred ccHHHHHhhcCCc--cccCceEEEEeecCCcc
Confidence 9999999999999 89999999999876554
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=5e-15 Score=117.73 Aligned_cols=78 Identities=40% Similarity=0.697 Sum_probs=71.0
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
|++.++|||+|||.++++++|+++|++| |.|.++.++ ++||||
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------------------------------rgfAFV 274 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------------------------------RDYAFV 274 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------------------------------cCeEEE
Confidence 4556899999999999999999999999 999998765 568999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+|.++++|.+|+..|++. .++|+.|.|.||+++..
T Consensus 275 eF~s~e~A~kAi~~lnG~--~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGK--ELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EeCCHHHHHHHHHHhCCC--EECCEEEEEEEccCCCc
Confidence 999999999999999998 89999999999988654
No 30
>KOG0145|consensus
Probab=99.61 E-value=5.7e-15 Score=105.79 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=90.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
...|||.+||..+|..+|+++|++||.|..-++. +|-|||.|+....|+.
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 4579999999999999999999999998776665 8999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy1185 54 -------------------------------------------------------------------------------- 53 (131)
Q Consensus 54 -------------------------------------------------------------------------------- 53 (131)
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence
Q ss_pred -----------hcCCc----eeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 54 -----------VTGLS----QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 54 -----------~~g~~----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.+|.+ .+.+..+.. +++.+|||||...+-++|.+|+..|||- .++++.|.|.|-.++
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~t-tnkCKGfgFVtMtNYdEAamAi~sLNGy--~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFT-TNKCKGFGFVTMTNYDEAAMAIASLNGY--RLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCC-cccccceeEEEecchHHHHHHHHHhcCc--cccceEEEEEEecCC
Confidence 33433 333444443 6788999999999999999999999998 999999999985543
No 31
>KOG0148|consensus
Probab=99.61 E-value=2.9e-15 Score=107.53 Aligned_cols=109 Identities=26% Similarity=0.394 Sum_probs=88.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------------------cCe--EEEE-------ECCHHHHHh
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------------------KDY--AFVH-------FEDRQEAIT 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------------------~~~--~fv~-------~~~~~~a~~ 53 (131)
.-+|||||||..++||+-|..||++.|++..|+++ +.+ -||. +++..+|=.
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~ 84 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA 84 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc
Confidence 46899999999999999999999999999999987 111 1221 222233333
Q ss_pred hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 54 VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 54 ~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.+| +..+.+..+.. +++++||+||.|.+.++|+.|+..|+|. =|++|.|+-.||--++
T Consensus 85 pFGevS~akvirD~~-T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 85 PFGEVSDAKVIRDMN-TGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIRTNWATRKP 143 (321)
T ss_pred cccccccceEeeccc-CCcccceeEEeccchHHHHHHHHHhCCe--eeccceeeccccccCc
Confidence 677 77777777776 8899999999999999999999999998 7899999999997554
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=2.1e-14 Score=111.79 Aligned_cols=50 Identities=38% Similarity=0.636 Sum_probs=47.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
.++|||+|||..+++++|+++|++||.|..+.++ +|||||+|.+.++|..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4789999999999999999999999999999887 5899999999999997
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=7.2e-15 Score=113.07 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
...+||||||++.+++++|+.+|++||.|.++.|+|- +| ||||||+|.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-----------------------------TG--RGFAFVEMss 57 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-----------------------------KG--RSFAYIDFSP 57 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-----------------------------cC--CceEEEEecC
Confidence 3568999999999999999999999999999999853 55 9999999998
Q ss_pred H--HhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 H--KSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~--~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
. .++.+|+..|+|. .+.|+.|+|..|++.
T Consensus 58 dddaEeeKAISaLNGA--EWKGR~LKVNKAKP~ 88 (759)
T PLN03213 58 SSTNSLTKLFSTYNGC--VWKGGRLRLEKAKEH 88 (759)
T ss_pred CcHHHHHHHHHHhcCC--eecCceeEEeeccHH
Confidence 7 6899999999999 899999999999853
No 34
>KOG0113|consensus
Probab=99.59 E-value=9.9e-15 Score=105.92 Aligned_cols=79 Identities=32% Similarity=0.561 Sum_probs=74.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+||||+-|+.+++|+.|++.|+.||+|..+++++. ..+|+++|||||+|..+
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d---------------------------~vTgkskGYAFIeye~e 153 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD---------------------------KVTGKSKGYAFIEYEHE 153 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeee---------------------------cccCCccceEEEEeccH
Confidence 689999999999999999999999999999999976 56899999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.+..+|.+...|. .|+|+.|.|.+-.
T Consensus 154 rdm~~AYK~adG~--~Idgrri~VDvER 179 (335)
T KOG0113|consen 154 RDMKAAYKDADGI--KIDGRRILVDVER 179 (335)
T ss_pred HHHHHHHHhccCc--eecCcEEEEEecc
Confidence 9999999999997 9999999998854
No 35
>KOG4207|consensus
Probab=99.59 E-value=4.3e-15 Score=103.14 Aligned_cols=82 Identities=28% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+.+.+|-|-||...|+.++|+.+|++||.|.+++|++. ..++.++|||||.|+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd---------------------------r~Tr~sRgFaFVrf~ 63 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD---------------------------RYTRQSRGFAFVRFH 63 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccc---------------------------cccccccceeEEEee
Confidence 45789999999999999999999999999999999965 458899999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
+..+|+.|++.|.|. .|+|+.|.|++|.=
T Consensus 64 ~k~daedA~damDG~--~ldgRelrVq~ary 92 (256)
T KOG4207|consen 64 DKRDAEDALDAMDGA--VLDGRELRVQMARY 92 (256)
T ss_pred ecchHHHHHHhhcce--eeccceeeehhhhc
Confidence 999999999999998 99999999988763
No 36
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=3e-14 Score=82.82 Aligned_cols=72 Identities=40% Similarity=0.605 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
+|||+|||..+++++|+++|.+||.+..+.+.+. .+.++++|||+|.+.+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-----------------------------~~~~~~~~~v~f~~~~~ 51 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-----------------------------TGKSKGFAFVEFESEED 51 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------------CCCCCceEEEEeCCHHH
Confidence 5899999999999999999999999999988753 25678999999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEE
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~ 108 (131)
|..|+..+++. .+.|+.+.|+
T Consensus 52 a~~a~~~~~~~--~~~~~~i~v~ 72 (72)
T smart00362 52 AEKAIEALNGT--KLGGRPLRVE 72 (72)
T ss_pred HHHHHHHhCCc--EECCEEEeeC
Confidence 99999999987 8899988763
No 37
>KOG0125|consensus
Probab=99.57 E-value=1e-14 Score=107.04 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.+.|+|.|||+..-+.||+..|++||.|.++.|+.+ ...+||||||+|.+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-----------------------------ERGSKGFGFVTmen 145 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-----------------------------ERGSKGFGFVTMEN 145 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-----------------------------cCCCCccceEEecC
Confidence 4578999999999999999999999999999999843 33479999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.++|.+|..+|||. .+.||+|.|+.|-.+
T Consensus 146 ~~dadRARa~LHgt--~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 146 PADADRARAELHGT--VVEGRKIEVNNATAR 174 (376)
T ss_pred hhhHHHHHHHhhcc--eeeceEEEEeccchh
Confidence 99999999999998 999999999988644
No 38
>KOG0146|consensus
Probab=99.57 E-value=4.7e-15 Score=106.57 Aligned_cols=94 Identities=21% Similarity=0.457 Sum_probs=84.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.++||||.|.+.-+|+|++++|..||.+.+|.+.+| -.|.++||+||.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg----------------------------~dg~sKGCAFVKf~s 69 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG----------------------------PDGNSKGCAFVKFSS 69 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC----------------------------CCCCCCCceEEEecc
Confidence 3689999999999999999999999999999999987 368899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCc--EEEEEecCCCCCCChHHHHhHh
Q psy1185 83 HKSASLAKKRLATGRLKVWGC--DIIVDWADPQEEPDTETMSKVL 125 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~--~l~v~~a~~~~~~~~~~~~~~~ 125 (131)
+.+|++|++.|||.. ++-|- .|+|.||+..+|+.-..|+++-
T Consensus 70 ~~eAqaAI~aLHgSq-TmpGASSSLVVK~ADTdkER~lRRMQQma 113 (371)
T KOG0146|consen 70 HAEAQAAINALHGSQ-TMPGASSSLVVKFADTDKERTLRRMQQMA 113 (371)
T ss_pred chHHHHHHHHhcccc-cCCCCccceEEEeccchHHHHHHHHHHHH
Confidence 999999999999975 44444 4999999999999888888764
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=6.7e-14 Score=99.72 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=67.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
..+|||+||++.+|+++|+++|+.||+|.++++++ .+..+++|||+|.++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~------------------------------D~et~gfAfVtF~d~ 54 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR------------------------------SGEYACTAYVTFKDA 54 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------------CCCcceEEEEEECCH
Confidence 57999999999999999999999999999999885 245578999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
++|..|+ .|+|. .|.++.|.|.-+.
T Consensus 55 ~aaetAl-lLnGa--~l~d~~I~It~~~ 79 (243)
T PLN03121 55 YALETAV-LLSGA--TIVDQRVCITRWG 79 (243)
T ss_pred HHHHHHH-hcCCC--eeCCceEEEEeCc
Confidence 9999998 79998 8999999887543
No 40
>KOG0111|consensus
Probab=99.53 E-value=6.4e-15 Score=103.26 Aligned_cols=85 Identities=29% Similarity=0.567 Sum_probs=78.0
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
++.++||||+|...+++.-|...|-+||.|..+.++..| .+++.||||||+|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy---------------------------esqkHRgFgFVefe 60 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY---------------------------ESQKHRGFGFVEFE 60 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccch---------------------------hcccccceeEEEee
Confidence 346899999999999999999999999999999998664 37888999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
..++|.+|+..+++. .|.|+.|+|.+|+|..-
T Consensus 61 ~aEDAaaAiDNMnes--EL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 61 EAEDAAAAIDNMNES--ELFGRTIRVNLAKPEKI 92 (298)
T ss_pred ccchhHHHhhcCchh--hhcceeEEEeecCCccc
Confidence 999999999999998 89999999999997654
No 41
>KOG0126|consensus
Probab=99.53 E-value=2e-15 Score=102.93 Aligned_cols=84 Identities=31% Similarity=0.504 Sum_probs=75.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
+.-|||||||+..||.+|.-+|++||+|+.+.++|. ..+|+++||||+.|.+.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD---------------------------k~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD---------------------------KKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEec---------------------------CCCCcccceEEEEecCc
Confidence 456999999999999999999999999999999976 56999999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.+...|+..|||- .+.||.|+|.....-..+
T Consensus 88 RSTILAVDN~NGi--ki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 88 RSTILAVDNLNGI--KILGRTIRVDHVSNYKKP 118 (219)
T ss_pred cceEEEEeccCCc--eecceeEEeeecccccCC
Confidence 9999999999997 999999999875544433
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=98.52 Aligned_cols=80 Identities=38% Similarity=0.610 Sum_probs=73.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|.++|.+||.+..+.+... ..++.++|+|||+|.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d---------------------------~~~~~~~g~~~v~f~~~ 167 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD---------------------------RETGKSRGFAFVEFESE 167 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec---------------------------cccCccCceEEEEecCH
Confidence 389999999999999999999999999999888743 24789999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
++|..|+..+++. .+.|+.|.|.++.+
T Consensus 168 ~~~~~a~~~~~~~--~~~~~~~~v~~~~~ 194 (306)
T COG0724 168 ESAEKAIEELNGK--ELEGRPLRVQKAQP 194 (306)
T ss_pred HHHHHHHHHcCCC--eECCceeEeecccc
Confidence 9999999999987 99999999999653
No 43
>KOG0105|consensus
Probab=99.52 E-value=4e-14 Score=96.95 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=70.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.++|||||||.++-+.+|.++|.+||.|.++.+.. ......||||+|.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~------------------------------r~g~ppfafVeFEd 54 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN------------------------------RPGPPPFAFVEFED 54 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc------------------------------CCCCCCeeEEEecC
Confidence 478999999999999999999999999999998763 23347899999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
..+|..|+..-+|- .++|++|+|+++..-
T Consensus 55 ~RDAeDAiygRdGY--dydg~rLRVEfprgg 83 (241)
T KOG0105|consen 55 PRDAEDAIYGRDGY--DYDGCRLRVEFPRGG 83 (241)
T ss_pred ccchhhhhhccccc--ccCcceEEEEeccCC
Confidence 99999999999997 899999999998754
No 44
>KOG0124|consensus
Probab=99.51 E-value=4.8e-14 Score=105.18 Aligned_cols=108 Identities=21% Similarity=0.380 Sum_probs=95.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
+|.||||.+.+...|+-|+..|.+||+|+++.+. +||+||+|+-+++|.-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 6889999999999999999999999999999876 8999999999999987
Q ss_pred ----------------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHH
Q psy1185 54 ----------------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR 92 (131)
Q Consensus 54 ----------------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 92 (131)
++| +..|.+...+. .+..+||||++|.+.++...|+..
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-GRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-CCCccceeeEEeccccchHHHhhh
Confidence 566 66777777775 455699999999999999999999
Q ss_pred HhCCcceecCcEEEEEecCCCC
Q psy1185 93 LATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 93 l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+|-. .++|..|+|..+..++
T Consensus 272 MNlF--DLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 272 MNLF--DLGGQYLRVGKCVTPP 291 (544)
T ss_pred cchh--hcccceEecccccCCC
Confidence 9975 8999999998776443
No 45
>KOG0108|consensus
Probab=99.51 E-value=8e-14 Score=107.47 Aligned_cols=86 Identities=23% Similarity=0.397 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
+.+||||+|+++++++|.++|+..|.|.+++++.. ..+|..+||||++|.+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D---------------------------~~tG~~~G~~f~~~~~~~ 71 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD---------------------------RETGKPKGFGFCEFTDEE 71 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc---------------------------ccCCCcCceeeEecCchh
Confidence 78999999999999999999999999999998854 568999999999999999
Q ss_pred hHHHHHHHHhCCcceecCcEEEEEecCCCCCCChH
Q psy1185 85 SASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119 (131)
Q Consensus 85 ~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~~ 119 (131)
++..|++.|+|. .+.|++|+|.|+...+.....
T Consensus 72 ~~~~a~~~lNg~--~~~gr~l~v~~~~~~~~~~~~ 104 (435)
T KOG0108|consen 72 TAERAIRNLNGA--EFNGRKLRVNYASNRKNAERS 104 (435)
T ss_pred hHHHHHHhcCCc--ccCCceEEeecccccchhHHH
Confidence 999999999998 999999999999877765433
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=2.2e-13 Score=78.80 Aligned_cols=71 Identities=35% Similarity=0.612 Sum_probs=62.5
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHH
Q psy1185 9 VRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASL 88 (131)
Q Consensus 9 v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 88 (131)
|+|||..+++++|+++|++||.|..+.+... ..++.++++|||+|.+.++|..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~---------------------------~~~~~~~~~a~v~f~~~~~a~~ 53 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRD---------------------------KDTGKSKGFAFVEFESEEDAEK 53 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeC---------------------------CCCCCCCceEEEEeCCHHHHHH
Confidence 5899999999999999999999999988743 2256788999999999999999
Q ss_pred HHHHHhCCcceecCcEEEEE
Q psy1185 89 AKKRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 89 a~~~l~~~~~~~~g~~l~v~ 108 (131)
|+..+++. .++|+.+.|+
T Consensus 54 a~~~~~~~--~~~~~~~~v~ 71 (71)
T smart00360 54 ALEALNGK--ELDGRPLKVK 71 (71)
T ss_pred HHHHcCCC--eeCCcEEEeC
Confidence 99999987 7889888763
No 47
>KOG0127|consensus
Probab=99.50 E-value=2.6e-13 Score=105.37 Aligned_cols=112 Identities=23% Similarity=0.385 Sum_probs=94.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHh-------------------------
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAIT------------------------- 53 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~------------------------- 53 (131)
.|.|.|||+.|.+.+|+.+|++||.|.++.|+ +|||||+|....+|+.
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 68899999999999999999999999999998 7999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy1185 54 -------------------------------------------------------------------------------- 53 (131)
Q Consensus 54 -------------------------------------------------------------------------------- 53 (131)
T Consensus 199 ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k 278 (678)
T KOG0127|consen 199 YEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDK 278 (678)
T ss_pred ccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccc
Confidence
Q ss_pred ------------------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHH----
Q psy1185 54 ------------------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL---- 93 (131)
Q Consensus 54 ------------------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l---- 93 (131)
.+|-....+.+..+.+++++|.|||.|.+..+++.||...
T Consensus 279 ~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~ 358 (678)
T KOG0127|consen 279 KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPAS 358 (678)
T ss_pred hhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccC
Confidence 4563333333333469999999999999999999999987
Q ss_pred hCCcceecCcEEEEEecCCCCCCC
Q psy1185 94 ATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 94 ~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
-...+.++|+.|.|..|.++.+..
T Consensus 359 e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 359 EDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred CCceEEEeccEEeeeeccchHHHH
Confidence 222367899999999999887654
No 48
>KOG0130|consensus
Probab=99.50 E-value=5.9e-14 Score=91.65 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=73.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
.|||.++...++++++.+.|..||+|+++++-.. .++|..+|||+|+|.+.+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLD---------------------------RRtGy~KGYaLvEYet~ke 126 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD---------------------------RRTGYVKGYALVEYETLKE 126 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccc---------------------------cccccccceeeeehHhHHH
Confidence 5899999999999999999999999999987633 4588899999999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
|++|+..+||. .+.|..|.|.|+..+.+
T Consensus 127 Aq~A~~~~Ng~--~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 127 AQAAIDALNGA--ELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HHHHHHhccch--hhhCCceeEEEEEecCC
Confidence 99999999998 88999999999876655
No 49
>KOG0114|consensus
Probab=99.50 E-value=3e-13 Score=84.59 Aligned_cols=79 Identities=27% Similarity=0.445 Sum_probs=70.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+-|||.|||+++|.++..++|++||.|.++++-. +..-+|.|||.|.+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~------------------------------~k~TrGTAFVVYedi 67 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN------------------------------TKETRGTAFVVYEDI 67 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC------------------------------ccCcCceEEEEehHh
Confidence 46799999999999999999999999999998753 345589999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.+|.+|++.|.|- .+.++.+.|-|-.+..
T Consensus 68 ~dAk~A~dhlsg~--n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 68 FDAKKACDHLSGY--NVDNRYLVVLYYQPED 96 (124)
T ss_pred hhHHHHHHHhccc--ccCCceEEEEecCHHH
Confidence 9999999999997 8999999999877544
No 50
>KOG0144|consensus
Probab=99.49 E-value=4.6e-14 Score=106.79 Aligned_cols=50 Identities=30% Similarity=0.652 Sum_probs=47.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~ 53 (131)
.++||||.|+..+||.+++++|++||.|.+|+|+ ||||||+|+..+.|..
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~ 180 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVA 180 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHH
Confidence 6799999999999999999999999999999998 7999999999998887
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=7.8e-13 Score=77.13 Aligned_cols=74 Identities=34% Similarity=0.640 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
+|+|+|||..+++++|+++|+.+|.|..+.+... ..+.++++|||+|.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~----------------------------~~~~~~~~~~v~f~s~~~ 52 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD----------------------------KDTKSKGFAFVEFEDEED 52 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC----------------------------CCCCcceEEEEEECCHHH
Confidence 4899999999999999999999999999888742 123568999999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEEe
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
|..|++.+++. .++|+.+.|.|
T Consensus 53 a~~a~~~~~~~--~~~~~~~~v~~ 74 (74)
T cd00590 53 AEKALEALNGK--ELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHhCCC--eECCeEEEEeC
Confidence 99999999997 68999998875
No 52
>KOG0110|consensus
Probab=99.48 E-value=1.5e-13 Score=109.09 Aligned_cols=108 Identities=24% Similarity=0.426 Sum_probs=89.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-----------cCeEEEEECCHHHHHh-------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----------KDYAFVHFEDRQEAIT------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-----------~~~~fv~~~~~~~a~~------------------- 53 (131)
.+++||.||+++++.+++..+|...|.|.++.|. .|||||+|.++++|+.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999776 2999999999999998
Q ss_pred -----------------------------------------hcCCc-eeEEecCCCCCCCCcceEEEEeCCHHhHHHHHH
Q psy1185 54 -----------------------------------------VTGLS-QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKK 91 (131)
Q Consensus 54 -----------------------------------------~~g~~-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 91 (131)
.+|.. -+.+... ...+..+|||||+|-++.+|..|.+
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHH
Confidence 23322 2222222 3445669999999999999999999
Q ss_pred HHhCCcceecCcEEEEEecCCCC
Q psy1185 92 RLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 92 ~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.|.+. -++|++|+++||++..
T Consensus 674 al~ST--HlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 674 ALGST--HLYGRRLVLEWAKSDN 694 (725)
T ss_pred hhccc--ceechhhheehhccch
Confidence 99976 8999999999998754
No 53
>KOG0123|consensus
Probab=99.45 E-value=1.1e-12 Score=99.91 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=89.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-----cCeEEEEECCHHHHHh--------------------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAIT-------------------------- 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-----~~~~fv~~~~~~~a~~-------------------------- 53 (131)
..+||| +++|+..|.++|+++|++.++++. .|||||+|.++++|++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 468999 999999999999999999999988 5899999999999999
Q ss_pred --------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 54 --------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 54 --------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.+| +..|.+-.+.. | ++|| ||+|.+++.|.+|+..+||. .+.|+.|-|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--G-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--C-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEeeccc
Confidence 234 55555555443 3 8999 99999999999999999998 88999999998887
Q ss_pred CCCCC
Q psy1185 113 QEEPD 117 (131)
Q Consensus 113 ~~~~~ 117 (131)
+.++.
T Consensus 153 ~~er~ 157 (369)
T KOG0123|consen 153 KEERE 157 (369)
T ss_pred hhhhc
Confidence 77655
No 54
>KOG4206|consensus
Probab=99.44 E-value=6e-13 Score=93.38 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=74.4
Q ss_pred CCCceEEEEeCCCCCCCHHHHHH----HhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceE
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKE----AFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFC 76 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~----~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (131)
|+...||||.||+..+..++|++ ||++||.|..+...+ +.+.+|-|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------------------------------t~KmRGQA 55 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------------------------------TPKMRGQA 55 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------------------------------CCCccCce
Confidence 45667999999999999999988 999999999987653 57789999
Q ss_pred EEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 77 FLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 77 fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
||.|.+.+.|..|++.|+|- .+.|+.++++||..+..
T Consensus 56 ~VvFk~~~~As~A~r~l~gf--pFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 56 FVVFKETEAASAALRALQGF--PFYGKPMRIQYAKSDSD 92 (221)
T ss_pred EEEecChhHHHHHHHHhcCC--cccCchhheecccCccc
Confidence 99999999999999999997 78999999999987653
No 55
>KOG0123|consensus
Probab=99.42 E-value=1.7e-12 Score=98.84 Aligned_cols=109 Identities=22% Similarity=0.396 Sum_probs=87.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe------cCeEEEEECCHHHHHhh----c--------------------
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITV----T-------------------- 55 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~------~~~~fv~~~~~~~a~~~----~-------------------- 55 (131)
.+||.||+++++..+|.++|+.||.|.+|++. +|| ||+|+++++|.+. .
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 48999999999999999999999999999998 789 9999999999990 0
Q ss_pred --------------------------------CCce--eEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceec
Q psy1185 56 --------------------------------GLSQ--VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101 (131)
Q Consensus 56 --------------------------------g~~~--~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~ 101 (131)
...+ ..+...++..+.+++|+||.|.+++.|..|+..+++. ..+
T Consensus 157 ~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~--~~~ 234 (369)
T KOG0123|consen 157 EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK--IFG 234 (369)
T ss_pred cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC--cCC
Confidence 0000 0111122345778999999999999999999999998 677
Q ss_pred CcEEEEEecCCCCCCC
Q psy1185 102 GCDIIVDWADPQEEPD 117 (131)
Q Consensus 102 g~~l~v~~a~~~~~~~ 117 (131)
+..+.|.-+..+.+..
T Consensus 235 ~~~~~V~~aqkk~e~~ 250 (369)
T KOG0123|consen 235 DKELYVGRAQKKSERE 250 (369)
T ss_pred ccceeecccccchhhH
Confidence 8888888887755444
No 56
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.42 E-value=6.7e-12 Score=100.41 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=47.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
.++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 4689999999999999999999999999999987 6899999999999887
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=2.6e-12 Score=72.67 Aligned_cols=56 Identities=34% Similarity=0.581 Sum_probs=49.9
Q ss_pred HHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCccee
Q psy1185 21 LKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV 100 (131)
Q Consensus 21 l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~ 100 (131)
|+++|++||+|.++.+.+. . +++|||+|.+.++|..|++.|||. .+
T Consensus 1 L~~~f~~fG~V~~i~~~~~-------------------------------~-~~~a~V~f~~~~~A~~a~~~l~~~--~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-------------------------------K-RGFAFVEFASVEDAQKAIEQLNGR--QF 46 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-------------------------------S-TTEEEEEESSHHHHHHHHHHHTTS--EE
T ss_pred ChHHhCCcccEEEEEEEeC-------------------------------C-CCEEEEEECCHHHHHHHHHHhCCC--EE
Confidence 6789999999999988742 1 699999999999999999999998 89
Q ss_pred cCcEEEEEec
Q psy1185 101 WGCDIIVDWA 110 (131)
Q Consensus 101 ~g~~l~v~~a 110 (131)
+|++|+|+||
T Consensus 47 ~g~~l~V~~a 56 (56)
T PF13893_consen 47 NGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEEEC
Confidence 9999999996
No 58
>KOG4205|consensus
Probab=99.41 E-value=4.9e-13 Score=99.27 Aligned_cols=112 Identities=24% Similarity=0.356 Sum_probs=91.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
..+++|||+|+++++++.|++.|++||+|.+|.++ ++|+||+|.+.+....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57899999999999999999999999999999999 4999999997766555
Q ss_pred -----------------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 54 -----------------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 54 -----------------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
.+|....++......+..+++|+||.|.+++++.+++..--.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~--- 161 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFH--- 161 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccccee---
Confidence 345444444444456788999999999999888877554332
Q ss_pred eecCcEEEEEecCCCCCCC
Q psy1185 99 KVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~ 117 (131)
.+.|+.+.|.-|.|+....
T Consensus 162 ~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 162 DFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eecCceeeEeeccchhhcc
Confidence 8999999999999877654
No 59
>KOG0132|consensus
Probab=99.32 E-value=7.3e-12 Score=100.49 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=72.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
++|||||+|+..+++.+|..+|+.||+|.++.++ .+++||||....+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---------------------------------~~R~cAfI~M~~R 467 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---------------------------------PPRGCAFIKMVRR 467 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec---------------------------------cCCceeEEEEeeh
Confidence 6899999999999999999999999999999776 3589999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|+..|.+. .+.++.|++.||..+-.++
T Consensus 468 qdA~kalqkl~n~--kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 468 QDAEKALQKLSNV--KVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred hHHHHHHHHHhcc--cccceeeEEeeeccCCcch
Confidence 9999999999976 8899999999998766554
No 60
>KOG0153|consensus
Probab=99.30 E-value=1.1e-11 Score=91.81 Aligned_cols=76 Identities=22% Similarity=0.581 Sum_probs=69.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++||||+|....++.+|++.|.+||+|.++.+.- .+++|||+|.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------------------------------~~~CAFv~ftT 273 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------------------------------RKGCAFVTFTT 273 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------------------------------ccccceeeehh
Confidence 367999999999999999999999999999998873 26799999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
+.+|+.|....-+ .+.++|++|.|.|+.+
T Consensus 274 R~aAE~Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 274 REAAEKAAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred hHHHHHHHHhhcc-eeeecceEEEEEeCCC
Confidence 9999999888877 4799999999999998
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=3e-11 Score=71.40 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=51.9
Q ss_pred HHHHHHHhh----ccCCeeEEE-EecCeEEEEECCHHHHHhhcCCceeEEecCCCCC--CCCcceEEEEeCCHHhHHHHH
Q psy1185 18 EEKLKEAFE----QYGRVERVK-RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN--KKNRGFCFLEYDSHKSASLAK 90 (131)
Q Consensus 18 ~~~l~~~F~----~~G~v~~~~-i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~--~~~~~~~fv~f~~~~~a~~a~ 90 (131)
+++|+++|+ +||.|.++. ++.. ..+ +.++|+|||+|.+.++|.+|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~---------------------------~~~~~~~~rG~~fV~f~~~~dA~~A~ 54 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID---------------------------NVGYENHKRGNVYITFERSEDAARAI 54 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC---------------------------CCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 578888888 999999985 4321 123 788999999999999999999
Q ss_pred HHHhCCcceecCcEEEEE
Q psy1185 91 KRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 91 ~~l~~~~~~~~g~~l~v~ 108 (131)
+.|+|+ .++|+.|+++
T Consensus 55 ~~l~g~--~~~gr~l~~~ 70 (70)
T smart00361 55 VDLNGR--YFDGRTVKAE 70 (70)
T ss_pred HHhCCC--EECCEEEEeC
Confidence 999998 8999998763
No 62
>KOG0146|consensus
Probab=99.21 E-value=2.4e-11 Score=87.63 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=75.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..|+|||..||....+.||...|-.||.|.+.++--. +.++.+++|+||.|++
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD---------------------------RATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD---------------------------RATNQSKCFGFVSFDN 336 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh---------------------------hccccccceeeEecCC
Confidence 4689999999999999999999999999999876522 2378999999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
..+|+.|+..+||. .++-++|+|..-+|+.+.
T Consensus 337 p~SaQaAIqAMNGF--QIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGF--QIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcch--hhhhhhhhhhhcCccccC
Confidence 99999999999996 999999999998887653
No 63
>KOG4661|consensus
Probab=99.16 E-value=1.1e-10 Score=91.61 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=74.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+++||.+|+..|-..+|+.||++||.|+..+++.+ .++...++|+||+..+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN---------------------------aRsPGaRCYGfVTMSts 457 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN---------------------------ARSPGARCYGFVTMSTS 457 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeec---------------------------CCCCCcceeEEEEecch
Confidence 568999999999999999999999999999998854 34556699999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
+.|.+||..||-. .|.|+.|.|..+++.+..
T Consensus 458 ~eAtkCI~hLHrT--ELHGrmISVEkaKNEp~G 488 (940)
T KOG4661|consen 458 AEATKCIEHLHRT--ELHGRMISVEKAKNEPGG 488 (940)
T ss_pred HHHHHHHHHhhhh--hhcceeeeeeecccCccc
Confidence 9999999999987 899999999999876543
No 64
>KOG0415|consensus
Probab=99.14 E-value=1.2e-10 Score=86.75 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=74.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
...|||..|.+-|+.++|.-+|+.||.|.+|.+++. ..+|.+-.||||+|.+.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD---------------------------~ktgdsLqyaFiEFen~ 291 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD---------------------------RKTGDSLQYAFIEFENK 291 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEec---------------------------ccccchhheeeeeecch
Confidence 567999999999999999999999999999999976 45899999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
++..+|...|.+. .++.++|.|.|+.+
T Consensus 292 escE~AyFKMdNv--LIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 292 ESCEQAYFKMDNV--LIDDRRIHVDFSQS 318 (479)
T ss_pred hhHHHHHhhhcce--eeccceEEeehhhh
Confidence 9999999999986 89999999999764
No 65
>KOG0106|consensus
Probab=99.14 E-value=6.9e-11 Score=83.47 Aligned_cols=103 Identities=23% Similarity=0.394 Sum_probs=82.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhh---------cCCc-----------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV---------TGLS----------------- 58 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~---------~g~~----------------- 58 (131)
..+|||+||+...+.++.++|..||.+..+.+..+|+||+|.+..+|..+ .|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~ 81 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPR 81 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCC
Confidence 57999999999999999999999999999999999999999999999981 1111
Q ss_pred -----------------eeEEecCCC--------------CCCC------CcceEEEEeCCHHhHHHHHHHHhCCcceec
Q psy1185 59 -----------------QVIIYSSPD--------------DNKK------NRGFCFLEYDSHKSASLAKKRLATGRLKVW 101 (131)
Q Consensus 59 -----------------~~~~~~~~~--------------~~~~------~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~ 101 (131)
.+.+...+. .-|. ..+++||+|.+..+|..|+..|++. .+.
T Consensus 82 ~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~--~~~ 159 (216)
T KOG0106|consen 82 GGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGK--KLN 159 (216)
T ss_pred CCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccch--hhc
Confidence 000000000 0011 3689999999999999999999998 899
Q ss_pred CcEEEEEe
Q psy1185 102 GCDIIVDW 109 (131)
Q Consensus 102 g~~l~v~~ 109 (131)
++.|.+..
T Consensus 160 ~~~l~~~~ 167 (216)
T KOG0106|consen 160 GRRISVEK 167 (216)
T ss_pred Cceeeecc
Confidence 99999944
No 66
>KOG0147|consensus
Probab=99.13 E-value=8.7e-11 Score=91.33 Aligned_cols=111 Identities=22% Similarity=0.338 Sum_probs=88.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.+|+|+..|+...++.+|.++|+..|.|..++++ +|.|||.|.+.++...
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 3578888889999999999999999999999988 7999999998866554
Q ss_pred ------------------------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHH
Q psy1185 54 ------------------------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKK 91 (131)
Q Consensus 54 ------------------------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 91 (131)
.+|-.+.+......++|.++||||++|.+.+.|.+|+.
T Consensus 259 knr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 259 KNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred HHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHH
Confidence 22322222222223489999999999999999999999
Q ss_pred HHhCCcceecCcEEEEEecCCCCCC
Q psy1185 92 RLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 92 ~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.||| |.+-|+.|+|....-+-..
T Consensus 339 ~lng--felAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 339 QLNG--FELAGRLIKVSVVTERVDT 361 (549)
T ss_pred Hhcc--ceecCceEEEEEeeeeccc
Confidence 9999 5999999999876544443
No 67
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.11 E-value=2.2e-10 Score=86.76 Aligned_cols=51 Identities=33% Similarity=0.584 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~ 54 (131)
.++|||+|||.++++++|+++|++||.|..++++ ++||||+|.+.++|+.+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999999887 47999999999999994
No 68
>KOG4208|consensus
Probab=99.08 E-value=6.5e-10 Score=77.33 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc-CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..-+|++.+|....+.++..+|.++ |.+...++.|+ .++|+++|||||+|.+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn---------------------------krTGNSKgYAFVEFEs 101 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN---------------------------KRTGNSKGYAFVEFES 101 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc---------------------------cccCCcCceEEEEecc
Confidence 3468999999999999999999998 77888888776 6799999999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.+.|.=|-+.||+- .++|+.|.+.+-.|.
T Consensus 102 ~eVA~IaAETMNNY--Ll~e~lL~c~vmppe 130 (214)
T KOG4208|consen 102 EEVAKIAAETMNNY--LLMEHLLECHVMPPE 130 (214)
T ss_pred HHHHHHHHHHhhhh--hhhhheeeeEEeCch
Confidence 99999999999996 789999999987765
No 69
>KOG0147|consensus
Probab=99.06 E-value=6.7e-10 Score=86.49 Aligned_cols=48 Identities=35% Similarity=0.654 Sum_probs=45.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
.+|||||.++++++.|+..|++||.|..+.+. +|||||+|.+.++|..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 38999999999999999999999999998776 7999999999999998
No 70
>KOG0110|consensus
Probab=99.03 E-value=4.4e-09 Score=84.06 Aligned_cols=105 Identities=29% Similarity=0.358 Sum_probs=83.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh-----------------------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT----------------------------- 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~----------------------------- 53 (131)
+.++++|||..+..++|...|..||+|..+.++ -..++|+|.++.+|..
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~p 465 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDP 465 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCc
Confidence 578999999999999999999999999999665 2458999999999988
Q ss_pred ------------------------------------------------------------------------hcC-Ccee
Q psy1185 54 ------------------------------------------------------------------------VTG-LSQV 60 (131)
Q Consensus 54 ------------------------------------------------------------------------~~g-~~~~ 60 (131)
..| +..+
T Consensus 466 ka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~ 545 (725)
T KOG0110|consen 466 KADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSI 545 (725)
T ss_pred cccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEE
Confidence 122 1122
Q ss_pred EEecCCC--CCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 61 IIYSSPD--DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 61 ~~~~~~~--~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.+...++ ...-+.|||||+|.+.++|+.|++.|+|. .++|+.|.|+++.
T Consensus 546 ~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~ 596 (725)
T KOG0110|consen 546 EISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISE 596 (725)
T ss_pred EEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEecc
Confidence 2222111 11224599999999999999999999998 9999999999998
No 71
>KOG4212|consensus
Probab=99.01 E-value=2.3e-09 Score=82.00 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=70.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+.+.+||.|+|++..=.+|++||.. .|+|..|.+.- +..|++++||.|+|+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~----------------------------D~~GK~rGcavVEFk 94 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF----------------------------DESGKARGCAVVEFK 94 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec----------------------------ccCCCcCCceEEEee
Confidence 4677999999999999999999985 68999987763 357999999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
+++.+++|++.||.. .+.|+.|.|.-..
T Consensus 95 ~~E~~qKa~E~lnk~--~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 95 DPENVQKALEKLNKY--EVNGRELVVKEDH 122 (608)
T ss_pred CHHHHHHHHHHhhhc--cccCceEEEeccC
Confidence 999999999999987 8999999997643
No 72
>KOG4212|consensus
Probab=98.93 E-value=3.1e-09 Score=81.27 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=66.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.|+|+|.|||.++|=+.|++-|..||.|..+.|+- .|++++ .|.|.+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime------------------------------~GkskG--VVrF~s 582 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME------------------------------NGKSKG--VVRFFS 582 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc------------------------------cCCccc--eEEecC
Confidence 468899999999999999999999999999988873 355666 889999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
+++|++|+..+++. .++|+.|.|.|+
T Consensus 583 ~edAEra~a~Mngs--~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 583 PEDAERACALMNGS--RLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHHHHHhccC--cccCceeeeeeC
Confidence 99999999999998 999999999884
No 73
>KOG1190|consensus
Probab=98.92 E-value=2.5e-09 Score=81.05 Aligned_cols=103 Identities=31% Similarity=0.424 Sum_probs=85.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh----------------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT---------------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~---------------------------- 53 (131)
++.|.++|||++++|.++.+++.+||.|..+.+. ++.||++|.+.++|..
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lk 107 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELK 107 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHh
Confidence 5789999999999999999999999999999877 7899999999999987
Q ss_pred -----------------------------------------------------------------hcCCceeEEecCCCC
Q psy1185 54 -----------------------------------------------------------------VTGLSQVIIYSSPDD 68 (131)
Q Consensus 54 -----------------------------------------------------------------~~g~~~~~~~~~~~~ 68 (131)
.+|....|+..
T Consensus 108 t~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF---- 183 (492)
T KOG1190|consen 108 TDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF---- 183 (492)
T ss_pred ccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEE----
Confidence 22322222211
Q ss_pred CCCCcce-EEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 69 NKKNRGF-CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 69 ~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++.+| |.|.|.+.+.|+.|.-.|.|..+.=++|.|+++|++
T Consensus 184 -~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 184 -TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred -ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 233454 899999999999999999999877778889999886
No 74
>KOG0151|consensus
Probab=98.89 E-value=4.1e-09 Score=84.43 Aligned_cols=82 Identities=23% Similarity=0.380 Sum_probs=70.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+++||+||++.++++.|-..|++||+|.+++++..- .-......+.||||.|.++
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR------------------------tEeEk~r~r~cgfvafmnR 229 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR------------------------TEEEKRRERNCGFVAFMNR 229 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeeccc------------------------chhhhccccccceeeehhh
Confidence 4689999999999999999999999999999988210 0011234578999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.+|++|+..|+|. .+.+..+++.|++
T Consensus 230 ~D~era~k~lqg~--iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 230 ADAERALKELQGI--IVMEYEMKLGWGK 255 (877)
T ss_pred hhHHHHHHHhcce--eeeeeeeeecccc
Confidence 9999999999997 8899999999995
No 75
>KOG1456|consensus
Probab=98.89 E-value=1.7e-08 Score=75.96 Aligned_cols=109 Identities=28% Similarity=0.358 Sum_probs=86.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh----------------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT---------------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~---------------------------- 53 (131)
+-.|.|.+|-...+|.+|.+..+.||+|..+..+ +..+.|.|++.+.|+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE 110 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc
Confidence 4468999999999999999999999999998877 7889999999998888
Q ss_pred -------------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecC
Q psy1185 54 -------------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG 102 (131)
Q Consensus 54 -------------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g 102 (131)
+....+.++++-. ..++.-.|.|+|.+.+.|++|...|||.++.-+.
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvI--fkkngVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVI--FKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEE--EeccceeeEEeechhHHHHHHHhhcccccccccc
Confidence 1111111111110 1123346999999999999999999999999899
Q ss_pred cEEEEEecCCCC
Q psy1185 103 CDIIVDWADPQE 114 (131)
Q Consensus 103 ~~l~v~~a~~~~ 114 (131)
|.|+|+||+|..
T Consensus 189 CTLKIeyAkP~r 200 (494)
T KOG1456|consen 189 CTLKIEYAKPTR 200 (494)
T ss_pred eeEEEEecCcce
Confidence 999999999754
No 76
>KOG1548|consensus
Probab=98.88 E-value=5.6e-09 Score=77.63 Aligned_cols=90 Identities=26% Similarity=0.280 Sum_probs=73.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+.|||.|||.++|-+++.++|++||-|.+- + ..|-..+.+|.+. .|+.+|-|.+.|...
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d--~----------------~t~epk~KlYrd~--~G~lKGDaLc~y~K~ 193 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRD--P----------------QTGEPKVKLYRDN--QGKLKGDALCCYIKR 193 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEecc--C----------------CCCCeeEEEEecC--CCCccCceEEEeecc
Confidence 4579999999999999999999999987652 1 1223345555544 489999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+++..|+..|++. .+.|+.|+|+-|+-+..
T Consensus 194 ESVeLA~~ilDe~--~~rg~~~rVerAkfq~K 223 (382)
T KOG1548|consen 194 ESVELAIKILDED--ELRGKKLRVERAKFQMK 223 (382)
T ss_pred cHHHHHHHHhCcc--cccCcEEEEehhhhhhc
Confidence 9999999999998 78899999999874443
No 77
>KOG0116|consensus
Probab=98.88 E-value=7.5e-09 Score=79.83 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=65.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
.+|||+|||.+++..+|+++|.+||.|+...|... ...+...+||||+|.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr---------------------------~~~~~~~~fgFV~f~~~~ 341 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR---------------------------SPGGKNPCFGFVEFENAA 341 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEe---------------------------ccCCCcCceEEEEEeecc
Confidence 46999999999999999999999999999877621 012344499999999999
Q ss_pred hHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 85 SASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 85 ~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++.|+.+- ++.++++++.|+--++..
T Consensus 342 ~~~~~i~As---p~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 342 AVQNAIEAS---PLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred hhhhhhhcC---ccccCCeeEEEEeccccc
Confidence 999988775 679999999998765533
No 78
>KOG1457|consensus
Probab=98.81 E-value=4.6e-08 Score=69.21 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=64.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+||||.+||.++...+|..||..|---..+.+... .+.....+-+||+.|.++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T--------------------------sk~~~~~~pvaFatF~s~ 87 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT--------------------------SKGDQVCKPVAFATFTSH 87 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec--------------------------cCCCccccceEEEEecch
Confidence 689999999999999999999999855555444310 011122357899999999
Q ss_pred HhHHHHHHHHhCCcceec-CcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVW-GCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~-g~~l~v~~a~~~~~ 115 (131)
+.|++|.+.|||-.+... +..|++++|++...
T Consensus 88 q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 88 QFALAAMNALNGVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred HHHHHHHHHhcCeeeccccCceeEeeehhcCcc
Confidence 999999999999733322 55699999876544
No 79
>KOG0533|consensus
Probab=98.76 E-value=7.5e-08 Score=69.44 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=70.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.++|+|.|||..+++++|++||+.||.+..+-+- | ...|.+.|.|-|.|..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vh-------y---------------------~~~G~s~Gta~v~~~r 133 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVH-------Y---------------------DRAGRSLGTADVSFNR 133 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeec-------c---------------------CCCCCCCccceeeecc
Confidence 45789999999999999999999999966654332 1 4578899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|++.+++- .++|+.+.+....+...
T Consensus 134 ~~DA~~avk~~~gv--~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 134 RDDAERAVKKYNGV--ALDGRPMKIEIISSPSQ 164 (243)
T ss_pred hHhHHHHHHHhcCc--ccCCceeeeEEecCccc
Confidence 99999999999995 99999998887665443
No 80
>KOG0124|consensus
Probab=98.75 E-value=1.1e-07 Score=71.69 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=45.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
...|||..+.++.++++|+.+|+-||+|..|.+- +||||++|.+..+...
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 3579999999999999999999999999999987 8999999998765544
No 81
>KOG4211|consensus
Probab=98.73 E-value=2.9e-07 Score=71.28 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe------cCeEEEEECCHHHHHh----------------------
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~------~~~~fv~~~~~~~a~~---------------------- 53 (131)
++.--|=+.+|||++|+++|.++|+.|+ |.++.+. .|=|||+|.+.++++.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 3445577889999999999999999996 6666555 6899999999999988
Q ss_pred -------------------------------------hcCCc----eeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHH
Q psy1185 54 -------------------------------------VTGLS----QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR 92 (131)
Q Consensus 54 -------------------------------------~~g~~----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 92 (131)
+.||. +..+..+. .+++.+-|||.|.+.+.|+.|+..
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~--rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ--RGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC--CCCcccceEEEecCHHHHHHHHHH
Confidence 22322 22233333 356789999999999999999888
Q ss_pred HhCCcceecCcEEEEEec
Q psy1185 93 LATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 93 l~~~~~~~~g~~l~v~~a 110 (131)
-.. .++-+-|.|-.+
T Consensus 165 hre---~iGhRYIEvF~S 179 (510)
T KOG4211|consen 165 HRE---NIGHRYIEVFRS 179 (510)
T ss_pred HHH---hhccceEEeehh
Confidence 665 566666776443
No 82
>KOG0109|consensus
Probab=98.73 E-value=6.7e-09 Score=75.77 Aligned_cols=50 Identities=40% Similarity=0.751 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~ 53 (131)
+++++|||+.+.|+.++|+..|++||+|.+|.|+++|+||+|.-.++|..
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~ 127 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVE 127 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHH
Confidence 56899999999999999999999999999999999999999999988877
No 83
>KOG4660|consensus
Probab=98.73 E-value=1.4e-08 Score=79.39 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|+|-|||..+++++|..+|+.||+|.+++. +...++..||+|.|
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------------------------------t~~~~~~~~v~FyD 121 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------------------------------TPNKRGIVFVEFYD 121 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------------------------------ccccCceEEEEEee
Confidence 3679999999999999999999999999999654 44568999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEE
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDII 106 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~ 106 (131)
..+|++|+++|++. .+.|+.|.
T Consensus 122 vR~A~~Alk~l~~~--~~~~~~~k 143 (549)
T KOG4660|consen 122 VRDAERALKALNRR--EIAGKRIK 143 (549)
T ss_pred hHhHHHHHHHHHHH--Hhhhhhhc
Confidence 99999999999998 78888877
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.66 E-value=3.6e-07 Score=55.35 Aligned_cols=70 Identities=27% Similarity=0.439 Sum_probs=49.5
Q ss_pred eEEEEeCCCCCCCHHH----HHHHhhccC-CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 5 KVLYVRNLTQYCTEEK----LKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~----l~~~F~~~G-~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
+.|||.|||.+.+... |++|+..|| .|.++ ..+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------------------------------------~~~tAilr 45 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------------------------------------SGGTAILR 45 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------------------------------TT-EEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------------------------------------eCCEEEEE
Confidence 5799999999988765 667888886 66664 25789999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
|.+++.|.+|.+.|.|. .+.|.+|.|+|....
T Consensus 46 F~~~~~A~RA~KRmegE--dVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 46 FPNQEFAERAQKRMEGE--DVFGNKISVSFSPKN 77 (90)
T ss_dssp ESSHHHHHHHHHHHTT----SSSS--EEESS--S
T ss_pred eCCHHHHHHHHHhhccc--ccccceEEEEEcCCc
Confidence 99999999999999998 889999999997433
No 85
>KOG4209|consensus
Probab=98.64 E-value=7.1e-08 Score=69.38 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=71.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.+.+||||+...++.+++...|+.||.+..+.+... ...+++++|+||+|.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d---------------------------~~~~~~k~~~yvef~~ 152 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD---------------------------KFRGHPKGFAYVEFSS 152 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeecc---------------------------ccCCCcceeEEEeccc
Confidence 4578999999999999999999999999998888754 2367789999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.+.+..|+. |++. .+.|+.+.|.+..-.
T Consensus 153 ~~~~~~ay~-l~gs--~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 153 YELVEEAYK-LDGS--EIPGPAIEVTLKRTN 180 (231)
T ss_pred HhhhHHHhh-cCCc--ccccccceeeeeeee
Confidence 999999999 9998 899999999887644
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=7.6e-07 Score=55.76 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=64.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.+||-|.|+|...|.++|.+++... |...-++++-. ..++.+.|||||.|.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD---------------------------f~~~~N~GYAFVNf~ 53 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID---------------------------FKNKCNLGYAFVNFT 53 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee---------------------------ccCCCceEEEEEEcC
Confidence 3789999999999999999998864 44555555522 135678999999999
Q ss_pred CHHhHHHHHHHHhCCcceec--CcEEEEEecCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVW--GCDIIVDWADPQ 113 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~--g~~l~v~~a~~~ 113 (131)
+++.|.+-.+..+|..|... .+...|.||.-+
T Consensus 54 ~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 54 SPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 99999999999999866322 445688888754
No 87
>KOG0120|consensus
Probab=98.52 E-value=9.7e-07 Score=69.35 Aligned_cols=106 Identities=23% Similarity=0.402 Sum_probs=82.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.+++||++||...++..+.++...||++....++ ++|+|-.|.++.....
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 5689999999999999999999999999887766 7999999999977755
Q ss_pred ---------------------------------------------------------------hcCCc-eeEEecC-CC-
Q psy1185 54 ---------------------------------------------------------------VTGLS-QVIIYSS-PD- 67 (131)
Q Consensus 54 ---------------------------------------------------------------~~g~~-~~~~~~~-~~- 67 (131)
-+|.. .+.+... +.
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 12322 2222111 11
Q ss_pred CCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 68 DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 68 ~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
...-..|..||+|.+.+++++|...|+|. .+.++.+...|-.
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYyd 490 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYYD 490 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEecC
Confidence 12223577899999999999999999999 9999999988854
No 88
>KOG0226|consensus
Probab=98.51 E-value=1.5e-07 Score=67.65 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=72.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.-.||.|-|..+.+.+.|-+.|.+|-.-...+++|. .++|+++||+||.|.+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd---------------------------kRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD---------------------------KRTGKSKGYGFVSFRDP 242 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhcccccc---------------------------ccccccccceeeeecCH
Confidence 457999999999999999999999987777777765 57899999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++.+|++.++|+ .++.+.|.++-+.-+.
T Consensus 243 ad~~rAmrem~gk--yVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 243 ADYVRAMREMNGK--YVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHHhhccc--ccccchhHhhhhhHHh
Confidence 9999999999999 8899998887655443
No 89
>KOG1190|consensus
Probab=98.50 E-value=1.2e-06 Score=66.72 Aligned_cols=75 Identities=28% Similarity=0.397 Sum_probs=66.5
Q ss_pred ceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.+.|.|.||.. .+|.+.|.-+|+-||.|.+++|..+ .+.-|.|.|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n--------------------------------kkd~ALIQmsd 344 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN--------------------------------KKDNALIQMSD 344 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec--------------------------------CCcceeeeecc
Confidence 46788888865 5899999999999999999999843 24779999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
...|+.|+..|.|. .++||+|+|.+++.
T Consensus 345 ~~qAqLA~~hL~g~--~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 345 GQQAQLAMEHLEGH--KLYGKKLRVTLSKH 372 (492)
T ss_pred hhHHHHHHHHhhcc--eecCceEEEeeccC
Confidence 99999999999999 99999999999873
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.43 E-value=1.1e-06 Score=55.86 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=45.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
+.|.+.+++..++.++|++.|++||.|..+.+.+| ...|+|.|.+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---------------------------------~~~g~VRf~~~~ 48 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---------------------------------DTEGYVRFKTPE 48 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----------------------------------SEEEEEESS--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---------------------------------CCEEEEEECCcc
Confidence 46889999999999999999999999998877754 467999999999
Q ss_pred hHHHHHHHHhCC---cceecCcEEEEEe
Q psy1185 85 SASLAKKRLATG---RLKVWGCDIIVDW 109 (131)
Q Consensus 85 ~a~~a~~~l~~~---~~~~~g~~l~v~~ 109 (131)
.|+.|+..+... .+.+.+..+.++.
T Consensus 49 ~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 49 AAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred hHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 999999888654 5667776665554
No 91
>KOG4454|consensus
Probab=98.41 E-value=1.1e-07 Score=67.03 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=67.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+||||+|+...++|+-|.++|-+-|+|..+.|..+ ..++.+ ||||.|.++
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~----------------------------~d~~~k-Fa~v~f~~E 59 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG----------------------------QDQEQK-FAYVFFPNE 59 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC----------------------------ccCCCc-eeeeecccc
Confidence 579999999999999999999999999999988754 245555 999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.+..-|++-++|- .+.+..+.+.+-.
T Consensus 60 ~sv~~a~~L~ng~--~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 60 NSVQLAGQLENGD--DLEEDEEQRTLRC 85 (267)
T ss_pred cchhhhhhhcccc--hhccchhhccccc
Confidence 9999999999997 7888888777643
No 92
>KOG4205|consensus
Probab=98.29 E-value=1e-06 Score=65.86 Aligned_cols=50 Identities=32% Similarity=0.587 Sum_probs=46.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
.++||||+||.++++.++++.|++||.|..+.++ ++||||.|.++++.+.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 5689999999999999999999999988888776 8999999999999998
No 93
>KOG0129|consensus
Probab=98.24 E-value=6.1e-06 Score=64.45 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=69.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEE---E-------EecC---eEEEEECCHHHHHh-----------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV---K-------RIKD---YAFVHFEDRQEAIT----------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~---~-------i~~~---~~fv~~~~~~~a~~----------------- 53 (131)
+++||||+||++++|+.|...|..||.+.-- + ..+| |.|..|+++.+...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 5789999999999999999999999975321 0 1167 99999999998887
Q ss_pred ----------------------------------------------------hcCCceeEEecCCC---CCCCCcceEEE
Q psy1185 54 ----------------------------------------------------VTGLSQVIIYSSPD---DNKKNRGFCFL 78 (131)
Q Consensus 54 ----------------------------------------------------~~g~~~~~~~~~~~---~~~~~~~~~fv 78 (131)
+.++.+.+++..++ +-+.++|-|-|
T Consensus 339 s~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 339 SPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 12355555554332 45788999999
Q ss_pred EeCCHHhHHHHHHH
Q psy1185 79 EYDSHKSASLAKKR 92 (131)
Q Consensus 79 ~f~~~~~a~~a~~~ 92 (131)
+|.+.++-.+||..
T Consensus 419 tFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 419 TFSNQQAYIKAISA 432 (520)
T ss_pred eecccHHHHHHHhh
Confidence 99999998888875
No 94
>KOG1457|consensus
Probab=98.19 E-value=2.3e-06 Score=60.74 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=51.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
..|+||.||..+++|++|+.+|+.|.-...+++-. ...-..||++|.+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------------------------------~~g~~vaf~~~~~~ 258 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------------------------------RGGMPVAFADFEEI 258 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------------------------------CCCcceEeecHHHH
Confidence 46899999999999999999999997655555441 11246799999999
Q ss_pred HhHHHHHHHHhCC
Q psy1185 84 KSASLAKKRLATG 96 (131)
Q Consensus 84 ~~a~~a~~~l~~~ 96 (131)
+.|..|+..|+|.
T Consensus 259 ~~at~am~~lqg~ 271 (284)
T KOG1457|consen 259 EQATDAMNHLQGN 271 (284)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999996
No 95
>KOG4206|consensus
Probab=98.12 E-value=2.1e-05 Score=55.69 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=64.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
...+|+.|||..++.+.+..+|.+|.-..+++++.+ .++.|||+|.+.
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--------------------------------~~~iAfve~~~d 193 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--------------------------------RSGIAFVEFLSD 193 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--------------------------------CCceeEEecchh
Confidence 468999999999999999999999999999988732 378999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
..|..|...+++..++- ...+.|.+|+
T Consensus 194 ~~a~~a~~~lq~~~it~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 194 RQASAAQQALQGFKITK-KNTMQITFAK 220 (221)
T ss_pred hhhHHHhhhhccceecc-CceEEecccC
Confidence 99999999999974444 6678887764
No 96
>KOG4210|consensus
Probab=97.93 E-value=8.8e-06 Score=60.36 Aligned_cols=84 Identities=23% Similarity=0.446 Sum_probs=72.0
Q ss_pred ceEEE-EeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLY-VRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~-v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++| +++++.++++++|+..|..+|.|..+++... ..++..+++|++.|.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~---------------------------~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD---------------------------EESGDSKGFAYVDFSA 236 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCC---------------------------CCccchhhhhhhhhhh
Confidence 34566 9999999999999999999999999887732 3478889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
...+.+++.. +.. .++++.+.+.+..++...+
T Consensus 237 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 237 GNSKKLALND-QTR--SIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred chhHHHHhhc-ccC--cccCcccccccCCCCcccc
Confidence 9999999888 776 8899999999998876543
No 97
>KOG0112|consensus
Probab=97.88 E-value=5.1e-06 Score=68.55 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=84.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHhh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITV---------------------- 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~~---------------------- 54 (131)
.+|||+|||+...++.+|+..|..+|.+.++.|. .-|+|+.|.+-.++-..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 5789999999999999999999999999998887 57999999998877761
Q ss_pred ------------------------cCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 55 ------------------------TGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 55 ------------------------~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
++-++.+-.++. .+...|+++.|.+...|++|+..+.|.++.-..+++.|.||
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy---~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY---RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec---ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 111111111111 23457999999999999999999999866555667999998
Q ss_pred CCCCC
Q psy1185 111 DPQEE 115 (131)
Q Consensus 111 ~~~~~ 115 (131)
.+.-.
T Consensus 529 ~~~~~ 533 (975)
T KOG0112|consen 529 SPPGA 533 (975)
T ss_pred cCCCC
Confidence 85443
No 98
>KOG1995|consensus
Probab=97.80 E-value=3.7e-05 Score=57.75 Aligned_cols=92 Identities=22% Similarity=0.324 Sum_probs=71.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
...+|||-+||..++++++.++|.+||.|..-+-- +--.+-++.+. .++.+++-|.|.|.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t------------------~kPki~~y~dk-eT~~~KGeatvS~~D 125 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRT------------------GKPKIKIYTDK-ETGAPKGEATVSYED 125 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCC------------------CCcchhccccc-cccCcCCceeeeecC
Confidence 35689999999999999999999999987642111 00011223333 688999999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
...|+.|+..+.++ .+.+..|+|..|..+..
T Consensus 126 ~~~akaai~~~agk--df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 126 PPAAKAAIEWFAGK--DFCGNTIKVSLAERRTG 156 (351)
T ss_pred hhhhhhhhhhhccc--cccCCCchhhhhhhccC
Confidence 99999999999999 67788899988876653
No 99
>KOG0120|consensus
Probab=97.79 E-value=5.2e-05 Score=59.80 Aligned_cols=106 Identities=25% Similarity=0.338 Sum_probs=81.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc-----------C-CeeEEEEe--cCeEEEEECCHHHHHh----------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY-----------G-RVERVKRI--KDYAFVHFEDRQEAIT---------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~-----------G-~v~~~~i~--~~~~fv~~~~~~~a~~---------------- 53 (131)
.+.+||+++|..+++++.-.+|..- | .+..+.+- .+++|++|.+.+.|..
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~ 254 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKI 254 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCcee
Confidence 3568999999999999999888854 2 25555443 8999999999999988
Q ss_pred ---------------------------------------------------------hcC-CceeEEecCCCCCCCCcce
Q psy1185 54 ---------------------------------------------------------VTG-LSQVIIYSSPDDNKKNRGF 75 (131)
Q Consensus 54 ---------------------------------------------------------~~g-~~~~~~~~~~~~~~~~~~~ 75 (131)
.+| +..-.+..+. .+|.+++|
T Consensus 255 ~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~-~~g~skg~ 333 (500)
T KOG0120|consen 255 RRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS-ATGNSKGF 333 (500)
T ss_pred cccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc-ccccccce
Confidence 112 1111112222 34789999
Q ss_pred EEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 76 ~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
||.+|.+......|+..|||. .+++..|+|+.|-.
T Consensus 334 af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 334 AFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIV 368 (500)
T ss_pred eeeeeeCCcchhhhhcccchh--hhcCceeEeehhhc
Confidence 999999999999999999998 89999999988753
No 100
>KOG3152|consensus
Probab=97.77 E-value=2.9e-05 Score=56.06 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=58.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.-.||+++||+.+...-|+++|+.||.|-++++-.. +........+- ....+..-.-|.|+|.+.
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE-------~~s~~~~r~~~--------~~n~~~~y~EGWvEF~~K 138 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE-------DDSKRAARKRK--------GGNYKKLYSEGWVEFISK 138 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecch-------hhHHHHHHhhc--------CCCccccchhHHHHHHHH
Confidence 457999999999999999999999999999987611 00000000000 000111123378899999
Q ss_pred HhHHHHHHHHhCCcceecCcE
Q psy1185 84 KSASLAKKRLATGRLKVWGCD 104 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~ 104 (131)
..|.++...||+. .++|+.
T Consensus 139 rvAK~iAe~Lnn~--~Iggkk 157 (278)
T KOG3152|consen 139 RVAKRIAELLNNT--PIGGKK 157 (278)
T ss_pred HHHHHHHHHhCCC--ccCCCC
Confidence 9999999999998 778875
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=0.00014 Score=40.55 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
+.|-|.+.|.+..+ .+.+.|.+||+|..+.+.
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC
Confidence 56788899888754 455589999999998765
No 102
>KOG1365|consensus
Probab=97.70 E-value=0.00021 Score=54.49 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=73.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcc----CCeeEEEEe-------cCeEEEEECCHHHHHh---------------------
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQY----GRVERVKRI-------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~i~-------~~~~fv~~~~~~~a~~--------------------- 53 (131)
.|=+.+||+++++.++.++|.+- |....+.++ .|-|||.|..+++|..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTA 242 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhH
Confidence 34567999999999999999742 233444444 5899999999999988
Q ss_pred ---------------------------------------------------------hcC-----CceeEEecCCCCCCC
Q psy1185 54 ---------------------------------------------------------VTG-----LSQVIIYSSPDDNKK 71 (131)
Q Consensus 54 ---------------------------------------------------------~~g-----~~~~~~~~~~~~~~~ 71 (131)
++| +.-.-+++..+..|+
T Consensus 243 aEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGr 322 (508)
T KOG1365|consen 243 AEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGR 322 (508)
T ss_pred HHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCC
Confidence 111 111112222335688
Q ss_pred CcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEe
Q psy1185 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 72 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
+.|-|||.+.+.+.|.+|....+.+ .+.++.|.|--
T Consensus 323 PSGeAFIqm~nae~a~aaaqk~hk~--~mk~RYiEvfp 358 (508)
T KOG1365|consen 323 PSGEAFIQMRNAERARAAAQKCHKK--LMKSRYIEVFP 358 (508)
T ss_pred cChhhhhhhhhhHHHHHHHHHHHHh--hcccceEEEee
Confidence 8999999999999999999999986 44577776643
No 103
>KOG0128|consensus
Probab=97.69 E-value=2.6e-06 Score=69.79 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=80.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh----------------cC-Cc-
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV----------------TG-LS- 58 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~----------------~g-~~- 58 (131)
.++|+.||+..+.+.+|...|+.+|.+..+.+. +|+||+.|..+++|.++ .| .+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~ 747 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQ 747 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCC
Confidence 478999999999999999999999877665544 89999999999998881 11 00
Q ss_pred ---------------eeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 59 ---------------QVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 59 ---------------~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
...+.....+.|+++|-++|.|.+..++.+++...... .+....+.|..++|.
T Consensus 748 gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~--~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 748 GTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA--GKRENNGEVQVSNPE 815 (881)
T ss_pred CchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhh--hhhhcCccccccCCc
Confidence 00111111245788999999999999999998888776 666666777776653
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=0.00019 Score=54.00 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=59.6
Q ss_pred EEEEeCCCCCCCHHH----H--HHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcce-EEE
Q psy1185 6 VLYVRNLTQYCTEEK----L--KEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGF-CFL 78 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~----l--~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~-~fv 78 (131)
-+||-+||+....++ | .++|++||.|..+.+-+.- +.-...+..+ .||
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt-------------------------~s~nst~~h~gvYI 170 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT-------------------------SSLNSTASHAGVYI 170 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc-------------------------cccccccccceEEE
Confidence 489999988876665 3 3899999999998665320 0000111223 499
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
+|.+.++|.+|+....|. .++|+.|+..|.-
T Consensus 171 Ty~~kedAarcIa~vDgs--~~DGr~lkatYGT 201 (480)
T COG5175 171 TYSTKEDAARCIAEVDGS--LLDGRVLKATYGT 201 (480)
T ss_pred EecchHHHHHHHHHhccc--cccCceEeeecCc
Confidence 999999999999999998 8999999999874
No 105
>KOG2193|consensus
Probab=97.64 E-value=3.9e-05 Score=59.09 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=63.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|+|||.+..+.++|+.+|..-.- ...-.++ ..+|+||.+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~----------------------------------k~gyafvd~pdq 47 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----------------------------------KSGYAFVDCPDQ 47 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee----------------------------------ecceeeccCCch
Confidence 57899999999999999999985411 1111122 268999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.+|.+|++.++|+ ..+.|.++.+.++.++..+.
T Consensus 48 ~wa~kaie~~sgk-~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 48 QWANKAIETLSGK-VELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred hhhhhhHHhhchh-hhhcCceeeccchhhHHHHh
Confidence 9999999999996 69999999999998877654
No 106
>KOG4211|consensus
Probab=97.63 E-value=0.00045 Score=54.03 Aligned_cols=50 Identities=32% Similarity=0.379 Sum_probs=40.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEe-------cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRI-------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~i~-------~~~~fv~~~~~~~a~~ 53 (131)
...|=+.+||+.||+++|.++|+..--+.. +.++ .+=|||+|++.++|++
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 346778999999999999999997643333 3333 6889999999999999
No 107
>KOG0131|consensus
Probab=97.55 E-value=0.00015 Score=50.01 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=38.4
Q ss_pred CCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 68 DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 68 ~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.+...+||||++|.++++|.-|++.|+. +.+.|++|+|..+.
T Consensus 46 v~~~~qGygF~Ef~~eedadYAikiln~--VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 46 VTQKHQGYGFAEFRTEEDADYAIKILNM--VKLYGRPIRVNKAS 87 (203)
T ss_pred hcccccceeEEEEechhhhHHHHHHHHH--HHhcCceeEEEecc
Confidence 4566899999999999999999999995 59999999999987
No 108
>KOG1548|consensus
Probab=97.53 E-value=0.00066 Score=51.11 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=60.3
Q ss_pred CceEEEEeCCC----CCCC-------HHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCC
Q psy1185 3 KVKVLYVRNLT----QYCT-------EEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKK 71 (131)
Q Consensus 3 ~~~~l~v~nLp----~~~t-------~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 71 (131)
..++|.+.|+= ...+ .++|++-.++||.|.++.+. ..+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-------------------------------d~h 312 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-------------------------------DRH 312 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-------------------------------ccC
Confidence 35678888772 1233 24566668899999998776 356
Q ss_pred CcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 72 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
+.|.+-|.|.+.+.|..|++.|+|+ .++||.|..+...
T Consensus 313 PdGvvtV~f~n~eeA~~ciq~m~GR--~fdgRql~A~i~D 350 (382)
T KOG1548|consen 313 PDGVVTVSFRNNEEADQCIQTMDGR--WFDGRQLTASIWD 350 (382)
T ss_pred CCceeEEEeCChHHHHHHHHHhcCe--eecceEEEEEEeC
Confidence 7899999999999999999999999 8999999887544
No 109
>KOG1855|consensus
Probab=97.45 E-value=0.00012 Score=56.29 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=56.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCC--CCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN--KKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~--~~~~~~~fv~f 80 (131)
.+++|.+.|||.+-.-+.|.++|+.+|.|..++|+.. |.........+... -..+-+|+|+|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP----------------gaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP----------------GAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC----------------CCCCcccccCCccchhhhhhhhhhhhh
Confidence 3689999999999988999999999999999999842 11111111111100 11267899999
Q ss_pred CCHHhHHHHHHHHhC
Q psy1185 81 DSHKSASLAKKRLAT 95 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~ 95 (131)
...+.|.+|.+.++.
T Consensus 294 e~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 294 EEVEAARKARELLNP 308 (484)
T ss_pred hhhHHHHHHHHhhch
Confidence 999999999998854
No 110
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.40 E-value=0.00087 Score=42.21 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+.|-|-+.|+.. .+.+.+.|++||.|.+..-..+- ..|+.. .......++-.|.|.++
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~-------------~~~~~~-------~~~~~~~NWi~I~Y~~~ 64 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRS-------------SSGINP-------YPIPSGGNWIHITYDNP 64 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG------------------------------E-CCTTEEEEEESSH
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeeccccc-------------cccccc-------ccCCCCCCEEEEECCCH
Confidence 4567888999984 56777899999999887522000 000000 00123468899999999
Q ss_pred HhHHHHHHHHhCCcceecCc-EEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGC-DIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~-~l~v~~a~ 111 (131)
.+|.+||.. ||. .++|. .+-|.|.+
T Consensus 65 ~~A~rAL~~-NG~--i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 65 LSAQRALQK-NGT--IFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHHTT-TTE--EETTCEEEEEEE-H
T ss_pred HHHHHHHHh-CCe--EEcCcEEEEEEEcH
Confidence 999999876 554 67665 45677764
No 111
>KOG2314|consensus
Probab=97.31 E-value=0.001 Score=53.03 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCCCH------HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 5 KVLYVRNLTQYCTE------EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 5 ~~l~v~nLp~~~t~------~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
.-|+|.|+|.-=.. ..|..+|+++|++....++- ...|..+||.|+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~----------------------------~e~ggtkG~lf~ 110 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI----------------------------DEEGGTKGYLFV 110 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc----------------------------CccCCeeeEEEE
Confidence 45788888875333 35778999999999887762 234568999999
Q ss_pred EeCCHHhHHHHHHHHhCCcceec-CcEEEEEe
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVW-GCDIIVDW 109 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~-g~~l~v~~ 109 (131)
+|.+..+|+.|++.|+|+ .++ .+++.|..
T Consensus 111 E~~~~~~A~~aVK~l~G~--~ldknHtf~v~~ 140 (698)
T KOG2314|consen 111 EYASMRDAKKAVKSLNGK--RLDKNHTFFVRL 140 (698)
T ss_pred EecChhhHHHHHHhcccc--eecccceEEeeh
Confidence 999999999999999998 444 44566653
No 112
>KOG4849|consensus
Probab=97.25 E-value=0.00031 Score=53.08 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=59.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+|||||-|++|+++|.+...+-|. +.++++.-+ +..|+++|||+|...+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN---------------------------R~NGQSKG~AL~~~~Sd 134 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN---------------------------RTNGQSKGYALLVLNSD 134 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc---------------------------ccCCcccceEEEEecch
Confidence 5899999999999999998888774 333333221 34789999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcE-EEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVWGCD-IIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~-l~v~~a~ 111 (131)
.+..+-++.|..+ ++.|+. .+..|-+
T Consensus 135 Aa~Kq~MeiLP~k--~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 135 AAVKQTMEILPTK--TIHGQSPTVLSYNK 161 (498)
T ss_pred HHHHHHHHhcccc--eecCCCCeeeccch
Confidence 8888999999888 888886 3444443
No 113
>KOG4307|consensus
Probab=97.16 E-value=0.0021 Score=52.53 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=62.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
+.|-+.|+|++++-+||-++|.-|-.+-. +.+.+ .+.|...|-|-|.|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~----------------------------nd~G~pTGe~mvAfes~ 919 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR----------------------------NDDGVPTGECMVAFESQ 919 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee----------------------------cCCCCcccceeEeecCH
Confidence 46888999999999999999999965543 33333 35788999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEE
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~ 108 (131)
+.|.+|...|+++ .+..+.+.+.
T Consensus 920 ~eAr~A~~dl~~~--~i~nr~V~l~ 942 (944)
T KOG4307|consen 920 EEARRASMDLDGQ--KIRNRVVSLR 942 (944)
T ss_pred HHHHhhhhccccC--cccceeEEEE
Confidence 9999999999999 8888887765
No 114
>KOG1456|consensus
Probab=97.01 E-value=0.0065 Score=46.48 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=63.9
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.+.+.|.+|... ++.+.|..+|=.||.|.++++++. ..|-|.|+..+
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT--------------------------------k~gtamVemgd 334 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT--------------------------------KPGTAMVEMGD 334 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec--------------------------------ccceeEEEcCc
Confidence 456888999776 777889999999999999999852 36889999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
..+.++|+..||+. .+-|.+|.|..++
T Consensus 335 ~~aver~v~hLnn~--~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 335 AYAVERAVTHLNNI--PLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHHHhccC--ccccceEEEeecc
Confidence 99999999999997 6688888888776
No 115
>KOG1996|consensus
Probab=96.74 E-value=0.0077 Score=44.71 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=49.6
Q ss_pred HHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCc
Q psy1185 18 EEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGR 97 (131)
Q Consensus 18 ~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 97 (131)
++++++-.++||.|..|.|- ..+.-+-...--.||+|...++|.+|+-.|||.
T Consensus 300 ede~keEceKyg~V~~viif--------------------------eip~~p~deavRiFveF~r~e~aiKA~VdlnGR- 352 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIF--------------------------EIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR- 352 (378)
T ss_pred HHHHHHHHHhhcceeeEEEE--------------------------ecCCCccchhheeeeeeccHHHHHHHHHhcCCc-
Confidence 35667777888888876443 222222233345799999999999999999999
Q ss_pred ceecCcEEEEEecC
Q psy1185 98 LKVWGCDIIVDWAD 111 (131)
Q Consensus 98 ~~~~g~~l~v~~a~ 111 (131)
.++|+.++..|-+
T Consensus 353 -yFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 353 -YFGGRVVSACFYN 365 (378)
T ss_pred -eecceeeeheecc
Confidence 9999999988755
No 116
>KOG4676|consensus
Probab=96.72 E-value=0.005 Score=47.26 Aligned_cols=85 Identities=14% Similarity=0.297 Sum_probs=59.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+...|-|.||.+.++.+.+..||+..|.|.++.++-+ +++.........|||.|.+
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~------------------------~~d~~~pv~sRtcyVkf~d 61 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN------------------------VDDSKIPVISRTCYVKFLD 61 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCC------------------------CCCccCcceeeeEEEeccC
Confidence 4557899999999999999999999999999987722 1111223445679999999
Q ss_pred HHhHHHHHHHHhCCcceecCcE-EEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCD-IIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~-l~v~~a~~~~ 114 (131)
.+.+..|- .|.+. .+-++. |++-|+.+..
T Consensus 62 ~~sv~vaQ-hLtnt--vfvdraliv~p~~~~~~ 91 (479)
T KOG4676|consen 62 SQSVTVAQ-HLTNT--VFVDRALIVRPYGDEVI 91 (479)
T ss_pred CcceeHHh-hhccc--eeeeeeEEEEecCCCCC
Confidence 88887664 44443 444554 5555655433
No 117
>KOG2416|consensus
Probab=96.59 E-value=0.0029 Score=50.84 Aligned_cols=49 Identities=31% Similarity=0.391 Sum_probs=36.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhh-ccCCeeEEEEe---cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFE-QYGRVERVKRI---KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~i~---~~~~fv~~~~~~~a~~ 53 (131)
++.|||.||=.-.|...|+.|+. .+|.|.+. .| +..|||.|.+.+.|..
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~a 496 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAA 496 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHH
Confidence 46799999999999999999999 56667665 33 5566666666655555
No 118
>KOG2202|consensus
Probab=96.37 E-value=0.0023 Score=46.41 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=49.3
Q ss_pred HHHHHhh-ccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 20 KLKEAFE-QYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 20 ~l~~~F~-~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
++...++ +||+|.++.+..+- ..+-.|-++|.|...++|++|+..||+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl----------------------------~~hl~GNVYV~f~~Ee~ae~a~~~lnnR-- 133 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL----------------------------GDHLVGNVYVKFRSEEDAEAALEDLNNR-- 133 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc----------------------------chhhhhhhhhhcccHHHHHHHHHHHcCc--
Confidence 4444444 89999998766431 2345788999999999999999999998
Q ss_pred eecCcEEEEEecC
Q psy1185 99 KVWGCDIIVDWAD 111 (131)
Q Consensus 99 ~~~g~~l~v~~a~ 111 (131)
-+.|++|...+..
T Consensus 134 w~~G~pi~ae~~p 146 (260)
T KOG2202|consen 134 WYNGRPIHAELSP 146 (260)
T ss_pred cccCCcceeeecC
Confidence 8899999988865
No 119
>KOG0106|consensus
Probab=96.35 E-value=0.0025 Score=45.41 Aligned_cols=51 Identities=31% Similarity=0.472 Sum_probs=46.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~ 54 (131)
.+.+.+.+++..++.++|.+.|.++|++....+..+++||.|+..++|..+
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhc
Confidence 456889999999999999999999999977777899999999999999983
No 120
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.20 E-value=0.065 Score=35.92 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=56.4
Q ss_pred ceEEEEeCCCCCCCH----HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 4 VKVLYVRNLTQYCTE----EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~----~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
+.||.|.=|+.++.. ..+..-++.||+|.++... .+..|.|.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------------------------------GrqsavVv 131 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------------------------------GRQSAVVV 131 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------------------------------CCceEEEE
Confidence 567888777666554 3355566789999998654 26779999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
|.+..+|=.|+++++. ..-|..+.+.|-..-
T Consensus 132 F~d~~SAC~Av~Af~s---~~pgtm~qCsWqqrF 162 (166)
T PF15023_consen 132 FKDITSACKAVSAFQS---RAPGTMFQCSWQQRF 162 (166)
T ss_pred ehhhHHHHHHHHhhcC---CCCCceEEeeccccc
Confidence 9999999999999988 457888999996543
No 121
>KOG0115|consensus
Probab=96.18 E-value=0.0091 Score=43.42 Aligned_cols=64 Identities=31% Similarity=0.442 Sum_probs=54.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
..|||.||+..++.+.+.+-|+.||+|....++- +..++..+-++|.|.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v----------------------------D~r~k~t~eg~v~~~~k~ 83 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV----------------------------DDRGKPTREGIVEFAKKP 83 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeee----------------------------cccccccccchhhhhcch
Confidence 5799999999999999999999999998865552 224667788999999999
Q ss_pred hHHHHHHHHhCC
Q psy1185 85 SASLAKKRLATG 96 (131)
Q Consensus 85 ~a~~a~~~l~~~ 96 (131)
.|.+|++.+...
T Consensus 84 ~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 84 NARKAARRCREG 95 (275)
T ss_pred hHHHHHHHhccC
Confidence 999999998554
No 122
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.14 E-value=0.058 Score=32.82 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=41.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.+..|++ .|..+-..||.++|+.||.|. +..+ +-..|||...+
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi----------------------------------~dTSAfV~l~~ 51 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWI----------------------------------NDTSAFVALHN 51 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEE----------------------------------CTTEEEEEECC
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEE----------------------------------cCCcEEEEeec
Confidence 34556666 999999999999999999863 3333 24569999999
Q ss_pred HHhHHHHHHHHhC
Q psy1185 83 HKSASLAKKRLAT 95 (131)
Q Consensus 83 ~~~a~~a~~~l~~ 95 (131)
++.|..+++.+..
T Consensus 52 r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 52 RDQAKVVMNTLKK 64 (87)
T ss_dssp CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999998888864
No 123
>KOG4574|consensus
Probab=95.97 E-value=0.0054 Score=51.12 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=65.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
+.++-|.+-..+...|..+++.||.|.+....|+ -..|.|+|.+.+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---------------------------------~N~alvs~~s~~s 346 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD---------------------------------LNMALVSFSSVES 346 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc---------------------------------ccchhhhhHHHHH
Confidence 3456677778899999999999999999877654 4779999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
|..|+++++|+++...|-..+|.+|++-
T Consensus 347 ai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 347 AILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred HHHhhhhhcCCcccccCCceeEEecccc
Confidence 9999999999999999999999999853
No 124
>KOG0129|consensus
Probab=95.74 E-value=0.028 Score=44.52 Aligned_cols=51 Identities=27% Similarity=0.296 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhh-ccCCeeEEEEe--------cCeEEEEECCHHHHHh
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFE-QYGRVERVKRI--------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~i~--------~~~~fv~~~~~~~a~~ 53 (131)
..+|||||+||.-++..+|-.+|+ -||.|..+-|- +|-|-|+|++..+=.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~ 428 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIK 428 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHH
Confidence 468999999999999999999999 59988776553 8999999999877655
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.54 E-value=0.16 Score=29.15 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=41.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc---CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
..+|+|.|+ .+++.++++.+|..| .....+..+. -..|-|.|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWId----------------------------------DtScNvvf 49 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWID----------------------------------DTSCNVVF 49 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEec----------------------------------CCcEEEEE
Confidence 458999999 457889999999998 1234555542 24477889
Q ss_pred CCHHhHHHHHHHH
Q psy1185 81 DSHKSASLAKKRL 93 (131)
Q Consensus 81 ~~~~~a~~a~~~l 93 (131)
.+...|.+|+..|
T Consensus 50 ~d~~~A~~AL~~L 62 (62)
T PF10309_consen 50 KDEETAARALVAL 62 (62)
T ss_pred CCHHHHHHHHHcC
Confidence 9999999998764
No 126
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.45 E-value=0.075 Score=37.11 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=45.3
Q ss_pred CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHh--
Q psy1185 17 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLA-- 94 (131)
Q Consensus 17 t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~-- 94 (131)
..+.|+++|.+++.+.+....++ -+-..|.|.+.+.|.+|...|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---------------------------------FrRi~v~f~~~~~A~~~r~~l~~~ 54 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---------------------------------FRRIRVVFESPESAQRARQLLHWD 54 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---------------------------------TTEEEEE-SSTTHHHHHHHTST--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---------------------------------CCEEEEEeCCHHHHHHHHHHhccc
Confidence 35789999999999988877654 3457889999999999999998
Q ss_pred CCcceecCcEEEEEecCCCC
Q psy1185 95 TGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 95 ~~~~~~~g~~l~v~~a~~~~ 114 (131)
+. .+.|..+++-|+.+..
T Consensus 55 ~~--~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 55 GT--SFNGKRLRVYFGQPTP 72 (184)
T ss_dssp TS--EETTEE-EEE----SS
T ss_pred cc--ccCCCceEEEEccccc
Confidence 76 8899999999985433
No 127
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.73 E-value=0.24 Score=33.24 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=40.1
Q ss_pred HHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcce
Q psy1185 20 KLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLK 99 (131)
Q Consensus 20 ~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 99 (131)
+|.+.|++||.+.-++++ .+.-.|+|.+-+.|.+|+. ++|. +
T Consensus 52 ~ll~~~~~~GevvLvRfv-----------------------------------~~~mwVTF~dg~sALaals-~dg~--~ 93 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----------------------------------GDTMWVTFRDGQSALAALS-LDGI--Q 93 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----------------------------------TTCEEEEESSCHHHHHHHH-GCCS--E
T ss_pred HHHHHHHhCCceEEEEEe-----------------------------------CCeEEEEECccHHHHHHHc-cCCc--E
Confidence 677888899988877776 3567889998888887765 4565 8
Q ss_pred ecCcEEEEEecC
Q psy1185 100 VWGCDIIVDWAD 111 (131)
Q Consensus 100 ~~g~~l~v~~a~ 111 (131)
++|+.|+|+.-.
T Consensus 94 v~g~~l~i~LKt 105 (146)
T PF08952_consen 94 VNGRTLKIRLKT 105 (146)
T ss_dssp ETTEEEEEEE--
T ss_pred ECCEEEEEEeCC
Confidence 999999997643
No 128
>KOG0105|consensus
Probab=94.66 E-value=0.39 Score=33.69 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=53.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
.|.|.+||.+-+=++|++...+-|.|-...+.+ -+++.|+|...++
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r----------------------------------Dg~GvV~~~r~eD 162 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR----------------------------------DGVGVVEYLRKED 162 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCCeeeeeeec----------------------------------ccceeeeeeehhh
Confidence 578999999999999999999999987766553 3588999999999
Q ss_pred HHHHHHHHhCCcceecCcE
Q psy1185 86 ASLAKKRLATGRLKVWGCD 104 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~ 104 (131)
..-|++.|....+.-.|..
T Consensus 163 MkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 163 MKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred HHHHHHhhccccccCcCcE
Confidence 9999999987654444544
No 129
>KOG4307|consensus
Probab=94.60 E-value=0.026 Score=46.44 Aligned_cols=75 Identities=17% Similarity=0.012 Sum_probs=55.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
-.|||..||..+++.++.+.|..-..|.+ |.+.++ -++..++.|||.|..+
T Consensus 435 ~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~----------------------------P~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 435 GALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL----------------------------PTDLLRPAAFVAFIHP 486 (944)
T ss_pred ceEEeccCCccccccchhhhhhhhhhhhheeEeccC----------------------------Ccccccchhhheeccc
Confidence 36999999999999999999998766655 555432 2455677888888887
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEe
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
+++..|...-+.. .++-+.|+|.-
T Consensus 487 ~a~~~a~~~~~k~--y~G~r~irv~s 510 (944)
T KOG4307|consen 487 TAPLTASSVKTKF--YPGHRIIRVDS 510 (944)
T ss_pred cccchhhhccccc--ccCceEEEeec
Confidence 7777776665554 66666677753
No 130
>KOG2068|consensus
Probab=94.20 E-value=0.024 Score=42.63 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=55.9
Q ss_pred EEEEeCCCCCCCH-HHHH--HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 6 VLYVRNLTQYCTE-EKLK--EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 6 ~l~v~nLp~~~t~-~~l~--~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
-+||-+||...-. ..|+ +.|.+||.|..+.+-++-. .....+ ...-++|+|..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S-----------------------~~s~~~-~~~s~yITy~~ 134 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS-----------------------SSSSSG-GTCSVYITYEE 134 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcc-----------------------cccCCC-CCCcccccccc
Confidence 4678888876444 4444 6888999998876554300 000111 12238999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|..|+..++|. .++|+.++..++..
T Consensus 135 ~eda~rci~~v~g~--~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 135 EEDADRCIDDVDGF--VDDGRALKASLGTT 162 (327)
T ss_pred hHhhhhHHHHhhhH--HhhhhhhHHhhCCC
Confidence 99999999999996 78888877777653
No 131
>KOG2591|consensus
Probab=94.01 E-value=0.14 Score=41.26 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=51.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhc--cCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~--~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
+.|.|.++.||..+-.++++.||.. |-.+.+|.+-- ..-=||+|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----------------------------------N~nWyITf 219 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----------------------------------NDNWYITF 219 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----------------------------------cCceEEEe
Confidence 4678999999999999999999985 77888886541 23358899
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEE
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDI 105 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l 105 (131)
.+..+|+.|...|...--++.|+.|
T Consensus 220 esd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 220 ESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ecchhHHHHHHHHHHHHHhhcCcch
Confidence 9999999888777553224455443
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.80 E-value=1.1 Score=28.69 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHhhccC-CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYVRNLTQY-CTEEKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v~nLp~~-~t~~~l~~~F~~~G-~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.+++.+=-.|.. ++.++|..+.+.+- .|..++++|. ...++-.+.+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird-----------------------------~~pnrymVLikF~ 62 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD-----------------------------GTPNRYMVLIKFR 62 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC-----------------------------CCCceEEEEEEEC
Confidence 344444445555 55566666666654 4667777753 2234556999999
Q ss_pred CHHhHHHHHHHHhCCcc
Q psy1185 82 SHKSASLAKKRLATGRL 98 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~ 98 (131)
+.+.|..-....||+++
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 99999999999999865
No 133
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.44 E-value=0.87 Score=26.73 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHH
Q psy1185 14 QYCTEEKLKEAFEQYGR-----VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASL 88 (131)
Q Consensus 14 ~~~t~~~l~~~F~~~G~-----v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 88 (131)
...+..+|..++..-+. |-.+.+. ..|+||+-.. +.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----------------------------------~~~S~vev~~-~~a~~ 54 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----------------------------------DNFSFVEVPE-EVAEK 54 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------------------------------------SS-EEEEE-T-T-HHH
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----------------------------------eeEEEEEECH-HHHHH
Confidence 45778888888887653 4455554 4677777776 57888
Q ss_pred HHHHHhCCcceecCcEEEEEec
Q psy1185 89 AKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 89 a~~~l~~~~~~~~g~~l~v~~a 110 (131)
++..|++. .+.|++++|+.|
T Consensus 55 v~~~l~~~--~~~gk~v~ve~A 74 (74)
T PF03880_consen 55 VLEALNGK--KIKGKKVRVERA 74 (74)
T ss_dssp HHHHHTT----SSS----EEE-
T ss_pred HHHHhcCC--CCCCeeEEEEEC
Confidence 99999998 899999998865
No 134
>KOG0112|consensus
Probab=93.17 E-value=0.11 Score=43.86 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~ 53 (131)
.+.+|+|+|+.++....|...|..||.|..+.+- ..|+||+|++...|..
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQA 506 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchh
Confidence 3569999999999999999999999999998776 6899999999988887
No 135
>KOG4660|consensus
Probab=93.02 E-value=0.32 Score=39.10 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.8
Q ss_pred CCCCcceEEEEeCCHHhHHHHHHHHhCCcc-eecCcE-EEEEecCCCC
Q psy1185 69 NKKNRGFCFLEYDSHKSASLAKKRLATGRL-KVWGCD-IIVDWADPQE 114 (131)
Q Consensus 69 ~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~-~~~g~~-l~v~~a~~~~ 114 (131)
...+.|||||.|-+.+++..+.++.||+.| .+++.+ ..+.||+.+.
T Consensus 427 nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 427 NKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 445679999999999999999999999876 344443 4666776544
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.77 E-value=0.17 Score=35.09 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=44.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..+|-|++||++.|++++.+.+++ ++.-..-+.. .+.. ..........+-|+|.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~------~g~~----------------~~~~~~~~~~SRaYi~F~~ 64 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYF------QGKY----------------GKKSFKPPTYSRAYINFKN 64 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEE------EEEE----------------S-SSSTTS--EEEEEEESS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEE------ecCC----------------CCccCCCCcceEEEEEeCC
Confidence 458999999999999999887776 5554221111 1000 0000011123558888888
Q ss_pred HHhHHHHHHHHhCCcceecCc----EEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGC----DIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~----~l~v~~a~ 111 (131)
.+++..-...++|..+ .+.+ .-.|.+|-
T Consensus 65 ~~~~~~F~~~~~g~~F-~D~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 65 PEDLLEFRDRFDGHVF-VDSKGNEYPAVVEFAP 96 (176)
T ss_dssp CHHHHHHHHHCTTEEE-E-TTS-EEEEEEEE-S
T ss_pred HHHHHHHHHhcCCcEE-ECCCCCCcceeEEEcc
Confidence 8888888888877532 2222 24566654
No 137
>KOG0128|consensus
Probab=92.64 E-value=0.073 Score=44.60 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=45.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHh
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~ 53 (131)
..|+|.|.|+..|.++++.++...|.+.+.+++ +|.++|.|.++.+|.+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 468999999999999999999999999998766 7899999999999998
No 138
>KOG1365|consensus
Probab=92.24 E-value=1.2 Score=34.55 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=59.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcc----CCeeEEEEe----cCeEEEEECCHHHHHh-------------------------
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQY----GRVERVKRI----KDYAFVHFEDRQEAIT------------------------- 53 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~i~----~~~~fv~~~~~~~a~~------------------------- 53 (131)
+=..+|||..++.++-.+|.-- |-+.=|... +|.+.|.|.+++.-+.
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~ 142 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFL 142 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhhe
Confidence 4456999999999999998743 222222222 7899999998654333
Q ss_pred --------------------------------------hcC-------CceeEEecCCCCCCCCcceEEEEeCCHHhHHH
Q psy1185 54 --------------------------------------VTG-------LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASL 88 (131)
Q Consensus 54 --------------------------------------~~g-------~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 88 (131)
++| ...-++.+.. -.|+..|-||+-|..+++|+.
T Consensus 143 ~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 143 KIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQF 221 (508)
T ss_pred EecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHH
Confidence 121 2222333321 258889999999999999999
Q ss_pred HHHHHhC
Q psy1185 89 AKKRLAT 95 (131)
Q Consensus 89 a~~~l~~ 95 (131)
|+..-..
T Consensus 222 aL~khrq 228 (508)
T KOG1365|consen 222 ALRKHRQ 228 (508)
T ss_pred HHHHHHH
Confidence 9988654
No 139
>KOG2253|consensus
Probab=91.44 E-value=0.12 Score=42.31 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=56.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.-++||||+...++..-++.+...||.|.++... .|||.+|.++
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------------------------------~fgf~~f~~~ 83 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------------------------------KFGFCEFLKH 83 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------------------------------hhcccchhhH
Confidence 5689999999999999999999999998887433 2888899999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEe
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
..+.+|++.++.. .++|..+.+.-
T Consensus 84 ~~~~ra~r~~t~~--~~~~~kl~~~~ 107 (668)
T KOG2253|consen 84 IGDLRASRLLTEL--NIDDQKLIENV 107 (668)
T ss_pred HHHHHHHHHhccc--CCCcchhhccc
Confidence 9999999998875 77777765544
No 140
>KOG0804|consensus
Probab=91.24 E-value=0.92 Score=35.81 Aligned_cols=65 Identities=9% Similarity=0.279 Sum_probs=54.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhcc-CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcce-EEEEeC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGF-CFLEYD 81 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~-~fv~f~ 81 (131)
.+.|+|-.+|-.++..||..+...+ ..|.+++++|. |.+..| ..|.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd------------------------------~~pnrymvLIkFr 123 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD------------------------------GMPNRYMVLIKFR 123 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec------------------------------CCCceEEEEEEec
Confidence 5678999999999999999999876 56888988853 444454 899999
Q ss_pred CHHhHHHHHHHHhCCcc
Q psy1185 82 SHKSASLAKKRLATGRL 98 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~ 98 (131)
+..+|..-...+||+.+
T Consensus 124 ~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 124 DQADADTFYEEFNGKQF 140 (493)
T ss_pred cchhHHHHHHHcCCCcC
Confidence 99999999999999844
No 141
>smart00361 RRM_1 RNA recognition motif.
Probab=90.81 E-value=0.24 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=24.5
Q ss_pred HhhccCCee--EEE------EecCeEEEEECCHHHHHhhc
Q psy1185 24 AFEQYGRVE--RVK------RIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 24 ~F~~~G~v~--~~~------i~~~~~fv~~~~~~~a~~~~ 55 (131)
.|..++.|. .+. -.+|||||+|.+.++|..+.
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~ 54 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAI 54 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 678888763 331 24899999999999999854
No 142
>KOG0125|consensus
Probab=90.73 E-value=0.22 Score=37.67 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHhhccCCeeEEEEe---cCeEEEEECCHHHHHhh----cC--CceeEEec
Q psy1185 20 KLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITV----TG--LSQVIIYS 64 (131)
Q Consensus 20 ~l~~~F~~~G~v~~~~i~---~~~~fv~~~~~~~a~~~----~g--~~~~~~~~ 64 (131)
...+-|++.-.|.=|.-- +|||||+|++++||+++ -| ++++++.+
T Consensus 115 aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 115 AMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred HHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334556666666655443 89999999999999993 33 55555554
No 143
>KOG2135|consensus
Probab=90.65 E-value=0.23 Score=39.29 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=49.8
Q ss_pred CCCCCC-CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHH
Q psy1185 11 NLTQYC-TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLA 89 (131)
Q Consensus 11 nLp~~~-t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a 89 (131)
-.|+.. +-.+|...|.+||.|..|.+- .+.-.|.|+|.++.+|-.|
T Consensus 379 k~~~glnt~a~ln~hfA~fG~i~n~qv~---------------------------------~~~~~a~vTF~t~aeag~a 425 (526)
T KOG2135|consen 379 KSPFGLNTIADLNPHFAQFGEIENIQVD---------------------------------YSSLHAVVTFKTRAEAGEA 425 (526)
T ss_pred ccCCCCchHhhhhhhhhhcCcccccccc---------------------------------Cchhhheeeeeccccccch
Confidence 344443 347889999999999998653 2245689999999888666
Q ss_pred HHHHhCCcceecCcEEEEEecCC
Q psy1185 90 KKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 90 ~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
-. .++. .|+++-|+|.|-++
T Consensus 426 ~~-s~~a--vlnnr~iKl~whnp 445 (526)
T KOG2135|consen 426 YA-SHGA--VLNNRFIKLFWHNP 445 (526)
T ss_pred hc-cccc--eecCceeEEEEecC
Confidence 43 4555 89999999999876
No 144
>KOG4285|consensus
Probab=89.25 E-value=2.9 Score=31.50 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.3
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHH
Q psy1185 9 VRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASL 88 (131)
Q Consensus 9 v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~ 88 (131)
|-+.|+.-. .-+..+|++||.|..... +...++-+|.|.++-.|++
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~---------------------------------~~ngNwMhirYssr~~A~K 247 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVT---------------------------------PSNGNWMHIRYSSRTHAQK 247 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeec---------------------------------CCCCceEEEEecchhHHHH
Confidence 446666643 556679999999988632 3445678888888888888
Q ss_pred HHHH
Q psy1185 89 AKKR 92 (131)
Q Consensus 89 a~~~ 92 (131)
||..
T Consensus 248 ALsk 251 (350)
T KOG4285|consen 248 ALSK 251 (350)
T ss_pred hhhh
Confidence 8765
No 145
>KOG4410|consensus
Probab=88.47 E-value=0.85 Score=34.09 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCe
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRV 31 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v 31 (131)
+-||++|||.++...+|+..+.+-|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 459999999999999999998887653
No 146
>KOG4210|consensus
Probab=87.41 E-value=0.46 Score=35.45 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=56.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++.|+|++.+.+.+.+...++..+|....+..... .....+++++.+.|...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~---------------------------~~~~~sk~~~s~~f~~k 140 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL---------------------------EDSLSSKGGLSVHFAGK 140 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhh---------------------------ccccccccceeeccccH
Confidence 578999999999999988899999998777665532 23566788899999998
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEE
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVD 108 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~ 108 (131)
+.+..++...... .+.++.+...
T Consensus 141 s~~~~~l~~s~~~--~~~~~~~~~d 163 (285)
T KOG4210|consen 141 SQFFAALEESGSK--VLDGNKGEKD 163 (285)
T ss_pred HHHHHHHHhhhcc--ccccccccCc
Confidence 8888888776654 4455544433
No 147
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=87.21 E-value=0.61 Score=26.06 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.1
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.++||||.|.+.++|+.+..
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~ 57 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALE 57 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred ccceEEEEEcCHHHHHHHHH
Confidence 37999999999999998543
No 148
>KOG0149|consensus
Probab=87.03 E-value=0.49 Score=34.23 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=16.1
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|.++
T Consensus 54 kGyGfVTf~d~~aa~rA 70 (247)
T KOG0149|consen 54 KGYGFVTFRDAEAATRA 70 (247)
T ss_pred cceeeEEeecHHHHHHH
Confidence 89999999999999993
No 149
>KOG0122|consensus
Probab=86.35 E-value=1 Score=32.85 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCeeEEE-----EecCeEEEEECCHHHHHhh
Q psy1185 19 EKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~~~-----i~~~~~fv~~~~~~~a~~~ 54 (131)
.+|..-|...-.|.=++ +.+|||||+|.+.++|.++
T Consensus 207 ~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rA 247 (270)
T KOG0122|consen 207 EELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARA 247 (270)
T ss_pred HHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHH
Confidence 56666667666554333 3499999999999999994
No 150
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=86.19 E-value=0.69 Score=30.86 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=16.9
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 75 ~kGfaFV~F~~~e~A~~Al 93 (144)
T PLN03134 75 SRGFGFVNFNDEGAATAAI 93 (144)
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3899999999999999954
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=85.24 E-value=1.4 Score=27.53 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=29.6
Q ss_pred cCeEEEEECCHHHHHhhcCC-ceeEEecCCCCCCCCcceEEEEeCCHHhHHHH
Q psy1185 38 KDYAFVHFEDRQEAITVTGL-SQVIIYSSPDDNKKNRGFCFLEYDSHKSASLA 89 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~-~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a 89 (131)
.|||||+|.++++|...... .+.... ...+...|=|.|...+.-.+-
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g~~w~-----~~~s~Kvc~i~yAriQG~~al 92 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNGKKWP-----NFNSKKVCEISYARIQGKDAL 92 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcCCccc-----cCCCCcEEEEehhHhhCHHHH
Confidence 79999999999999995542 222211 122455666777665554433
No 152
>KOG0107|consensus
Probab=85.24 E-value=1 Score=31.35 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHh
Q psy1185 19 EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 53 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~ 53 (131)
+.+...|.+.=.|.=...+.|||||+|+++.+|+.
T Consensus 28 E~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~D 62 (195)
T KOG0107|consen 28 ERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAED 62 (195)
T ss_pred HHHHHhcCcceeEEEeecCCCceEEeccCcccHHH
Confidence 44555667766666677899999999999999998
No 153
>KOG4208|consensus
Probab=85.11 E-value=0.74 Score=32.67 Aligned_cols=16 Identities=50% Similarity=0.735 Sum_probs=15.3
Q ss_pred cCeEEEEECCHHHHHh
Q psy1185 38 KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~ 53 (131)
+|||||+|++++.|..
T Consensus 92 KgYAFVEFEs~eVA~I 107 (214)
T KOG4208|consen 92 KGYAFVEFESEEVAKI 107 (214)
T ss_pred CceEEEEeccHHHHHH
Confidence 7999999999999988
No 154
>KOG0121|consensus
Probab=79.45 E-value=1.3 Score=29.32 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.3
Q ss_pred EecCeEEEEECCHHHHHhhc
Q psy1185 36 RIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 36 i~~~~~fv~~~~~~~a~~~~ 55 (131)
.+.|||||.|.+.++|+.+.
T Consensus 76 tpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 76 TPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred CccceEEEEEecchhHHHHH
Confidence 35899999999999999943
No 155
>PLN03120 nucleic acid binding protein; Provisional
Probab=76.41 E-value=2.5 Score=31.16 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.++++|+.+.
T Consensus 42 ~~GfAFVtF~d~eaAe~Al 60 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETAL 60 (260)
T ss_pred CCCEEEEEeCcHHHHHHHH
Confidence 4799999999999999943
No 156
>KOG0113|consensus
Probab=75.93 E-value=3.9 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=23.8
Q ss_pred HHHhhccCCeeEEEE-----ecCeEEEEECCHHHHHhhc
Q psy1185 22 KEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 22 ~~~F~~~G~v~~~~i-----~~~~~fv~~~~~~~a~~~~ 55 (131)
.+.|...-.|.=++- .+|||||.|+.+.++..++
T Consensus 122 F~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AY 160 (335)
T KOG0113|consen 122 FEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAY 160 (335)
T ss_pred HHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHH
Confidence 344565555544432 2899999999999998844
No 157
>KOG4676|consensus
Probab=75.12 E-value=0.6 Score=36.25 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=45.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+|++|++|+..+...++-++|..+|.|...++- .+....+|-++|...
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-------------------------------sk~~s~~c~~sf~~q 199 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA-------------------------------SKSRSSSCSHSFRKQ 199 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-------------------------------ccCCCcchhhhHhhh
Confidence 3689999999999999999999999999887765 234456666788776
Q ss_pred HhHHHHHHH
Q psy1185 84 KSASLAKKR 92 (131)
Q Consensus 84 ~~a~~a~~~ 92 (131)
.+...|++.
T Consensus 200 ts~~halr~ 208 (479)
T KOG4676|consen 200 TSSKHALRS 208 (479)
T ss_pred hhHHHHHHh
Confidence 666666554
No 158
>KOG2891|consensus
Probab=74.25 E-value=3 Score=31.21 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=28.0
Q ss_pred ceEEEEeCCCCC------------CCHHHHHHHhhccCCeeEEEEe
Q psy1185 4 VKVLYVRNLTQY------------CTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 4 ~~~l~v~nLp~~------------~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
..|||+.+||.. -+++-|+..|+.||.|..+.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 458888888864 3567899999999999998876
No 159
>KOG2318|consensus
Probab=71.56 E-value=21 Score=29.43 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHhhcc----CCeeEEEEecCeEEEEECCHHHHHh-hcCCceeEE-ecCC-CC-------
Q psy1185 4 VKVLYVRNLTQY-CTEEKLKEAFEQY----GRVERVKRIKDYAFVHFEDRQEAIT-VTGLSQVII-YSSP-DD------- 68 (131)
Q Consensus 4 ~~~l~v~nLp~~-~t~~~l~~~F~~~----G~v~~~~i~~~~~fv~~~~~~~a~~-~~g~~~~~~-~~~~-~~------- 68 (131)
.+.|-|-|+.|+ +...+|.-+|++| |.|.++.|... .|-....++. ..|...... .... ..
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS----eFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS----EFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh----hhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 567899999998 6778999999987 58888888721 1111111111 111100000 0000 00
Q ss_pred -------------CCCCc-ceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 69 -------------NKKNR-GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 69 -------------~~~~~-~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
-+.-+ =||.|+|.+...|.+....+.|..+.=-|..+-++|-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01112 2599999999999999999999744444555555553
No 160
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.21 E-value=9.2 Score=22.10 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=23.9
Q ss_pred EEEEeCCHHhHHHHHHHHhCCcceecCcEEEE
Q psy1185 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107 (131)
Q Consensus 76 ~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v 107 (131)
=||.|.+..+|.++.+..++. .+.+.++.+
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~--~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGT--LFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCC--EEEEEEEEe
Confidence 378999999999999999997 566655543
No 161
>KOG0111|consensus
Probab=71.19 E-value=4.6 Score=29.24 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred cCeEEEEECCHHHHHhh------cCCceeEEec
Q psy1185 38 KDYAFVHFEDRQEAITV------TGLSQVIIYS 64 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~------~g~~~~~~~~ 64 (131)
||||||+|...++|..+ ..+.++.+++
T Consensus 52 RgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 52 RGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 89999999999998882 1255666654
No 162
>KOG4207|consensus
Probab=70.81 E-value=4.5 Score=29.00 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=27.3
Q ss_pred HHHHHHhhccCCeeE-----EEEecCeEEEEECCHHHHHhhcC
Q psy1185 19 EKLKEAFEQYGRVER-----VKRIKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~-----~~i~~~~~fv~~~~~~~a~~~~g 56 (131)
.-+.+-+...|.|.= ..-.+|||||.|.+..+|+.++.
T Consensus 31 rrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~d 73 (256)
T KOG4207|consen 31 RRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALD 73 (256)
T ss_pred HHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHH
Confidence 345666788887642 23349999999999999888543
No 163
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=68.61 E-value=8.4 Score=28.80 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=27.1
Q ss_pred EEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 76 ~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
|||+|.+..+|+.|++.+... ....+.+..|-.+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~----~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK----RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC----CCCCceEeeCCCccc
Confidence 799999999999999987764 345567777655444
No 164
>KOG4008|consensus
Probab=67.62 E-value=4.1 Score=29.62 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
...+|+-|+|..++++.|.++.+++|-+......
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 5689999999999999999999999966655443
No 165
>KOG2193|consensus
Probab=66.15 E-value=0.2 Score=39.20 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
++++-+.|+|+...-+.|..|...||.+..|..+. +.......-|.|...
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn------------------------------t~~etavvnvty~~~ 129 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN------------------------------TDSETAVVNVTYSAQ 129 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc------------------------------cchHHHHHHHHHHHH
Confidence 45677889999998899999999999999986652 111223344678889
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
+.+..|+..++|. .+....+.+.|-
T Consensus 130 ~~~~~ai~kl~g~--Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 130 QQHRQAIHKLNGP--QLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHHhhcch--HhhhhhhhcccC
Confidence 9999999999998 888888888874
No 166
>PLN03121 nucleic acid binding protein; Provisional
Probab=61.53 E-value=8.7 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=24.2
Q ss_pred HHHHHHhhccCCeeEE--EEecCeEEEEECCHHHHHhhc
Q psy1185 19 EKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~~--~i~~~~~fv~~~~~~~a~~~~ 55 (131)
.++...|++.-.|.=+ .-..++|||+|.++++|+.+.
T Consensus 23 refFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl 61 (243)
T PLN03121 23 YDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV 61 (243)
T ss_pred HHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH
Confidence 3455556655443322 233579999999999998843
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.45 E-value=12 Score=21.34 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCeeEEEEe
Q psy1185 19 EKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~~~i~ 37 (131)
.+|+++|+..|+|.-+++-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998876653
No 168
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.29 E-value=34 Score=19.98 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHhhccC-CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCc
Q psy1185 19 EKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGR 97 (131)
Q Consensus 19 ~~l~~~F~~~G-~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 97 (131)
++|++-|...| ++..++-++. .+.+.+-..-+|+.....+... .++=+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~---------------------------~~~r~P~nmf~vel~~~~~~~~---Il~ik- 50 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLN---------------------------RDTKNPQNMFEVELVPAANGKE---ILNIK- 50 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccc---------------------------cCCCCcceeEEEEeeecCCCcc---eEeeh-
Confidence 46777788888 5677766632 2234455677787776543333 45545
Q ss_pred ceecCcEEEEEecCCCC
Q psy1185 98 LKVWGCDIIVDWADPQE 114 (131)
Q Consensus 98 ~~~~g~~l~v~~a~~~~ 114 (131)
+++|+++.|+-..-+.
T Consensus 51 -~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 51 -TLGGQRVTVERPHKRK 66 (69)
T ss_pred -hhCCeeEEEecCcccC
Confidence 7888888887654433
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.21 E-value=5.9 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFE 26 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~ 26 (131)
.++|.|.|||...++++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 56899999999999999987643
No 170
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=54.33 E-value=11 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhhccCC
Q psy1185 14 QYCTEEKLKEAFEQYGR 30 (131)
Q Consensus 14 ~~~t~~~l~~~F~~~G~ 30 (131)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 57889999999997653
No 171
>PF14893 PNMA: PNMA
Probab=52.70 E-value=12 Score=28.58 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEe
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRI 37 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~i~ 37 (131)
+-.+.+.|.++|.+|++.+|.+.+.. .-+.-..++.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl 52 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVL 52 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceeh
Confidence 45678999999999999999988764 3333344433
No 172
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=52.38 E-value=44 Score=19.22 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=34.8
Q ss_pred CeEEEEECCHHHHHh------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCccee
Q psy1185 39 DYAFVHFEDRQEAIT------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV 100 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~ 100 (131)
.+.+|.|.+..+|-+ ..|+...++.. |+.- +.|||+.-.-+.++...+...+....+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~-P~~i--~~~CG~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPT-PREI--SAGCGLALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCC-Chhc--cCCCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence 367899999988888 34564444443 3322 34555544444466666666666553333
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=51.98 E-value=24 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=26.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
...|+|||.++|..-+..++...-.+....+|
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 45699999999999999999987666666655
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=50.55 E-value=11 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=30.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 39 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 39 (131)
.|.|...|+..+++-..+...|.+||+|.+++++.+
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~ 50 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKS 50 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecC
Confidence 355777899989988889999999999999999843
No 175
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=47.38 E-value=32 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 70 KKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 70 ~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
...+||-||+=.+..+...|++.+.+
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccc
Confidence 34699999999999999999988876
No 176
>KOG4483|consensus
Probab=46.72 E-value=48 Score=26.28 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=42.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEe-cCeEEEEECCHHHHHhhcCCc
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRI-KDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~~~i~-~~~~fv~~~~~~~a~~~~g~~ 58 (131)
+.|=|.+.|...-.++|...|++|+.- -.+..+ ...++--|.+...|..++++.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhcc
Confidence 457788999998888999999999752 233333 789999999999999977754
No 177
>KOG0132|consensus
Probab=43.81 E-value=67 Score=27.68 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=42.8
Q ss_pred CeEEEEECCHHHHHhhc------CCceeEEec-CCCC----------CCCCcceEEEEeCCHHhHHHHHHHHhCCcceec
Q psy1185 39 DYAFVHFEDRQEAITVT------GLSQVIIYS-SPDD----------NKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~~------g~~~~~~~~-~~~~----------~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~ 101 (131)
+||||.+....+|.+++ ++....+.+ +... -....|+-+|-+....++..++.. |. +++
T Consensus 458 ~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e--ga--m~d 533 (894)
T KOG0132|consen 458 GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE--GA--MLD 533 (894)
T ss_pred ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh--hc--eec
Confidence 78999999999999932 222222211 1111 122458888888887777555444 55 778
Q ss_pred CcEEEEEecC
Q psy1185 102 GCDIIVDWAD 111 (131)
Q Consensus 102 g~~l~v~~a~ 111 (131)
+-.+...|--
T Consensus 534 ~~t~~p~~kg 543 (894)
T KOG0132|consen 534 GTTGPPEWKG 543 (894)
T ss_pred CccCCccccc
Confidence 8777777643
No 178
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.89 E-value=44 Score=21.48 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCHHHHHHHhhccCCeeE
Q psy1185 16 CTEEKLKEAFEQYGRVER 33 (131)
Q Consensus 16 ~t~~~l~~~F~~~G~v~~ 33 (131)
.+.+.|.+.|+.|.++.-
T Consensus 29 ~~~~~l~~~l~~f~p~kv 46 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKV 46 (116)
T ss_dssp --SHHHHHHHHH---SEE
T ss_pred cCHHHHHHHHHhcCCcee
Confidence 355789999999988753
No 179
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.42 E-value=43 Score=23.13 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=30.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
....+++++++..++...+...|..+|.+....+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeecc
Confidence 45689999999999999999999999999665544
No 180
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=41.25 E-value=9.3 Score=22.17 Aligned_cols=24 Identities=4% Similarity=0.239 Sum_probs=16.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhh
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFE 26 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~ 26 (131)
.++.+|||++|..+-.+.=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 367899999999876654333333
No 181
>KOG0108|consensus
Probab=40.78 E-value=30 Score=27.58 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=15.6
Q ss_pred ecCeEEEEECCHHHHHh
Q psy1185 37 IKDYAFVHFEDRQEAIT 53 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~ 53 (131)
.+||||++|.+.++|+.
T Consensus 59 ~~G~~f~~~~~~~~~~~ 75 (435)
T KOG0108|consen 59 PKGFGFCEFTDEETAER 75 (435)
T ss_pred cCceeeEecCchhhHHH
Confidence 38999999999999988
No 182
>KOG4019|consensus
Probab=39.89 E-value=33 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=29.6
Q ss_pred cceEEEEeCCHHhHHHHHHHHhCCcceecCc-EEEEEecCCC
Q psy1185 73 RGFCFLEYDSHKSASLAKKRLATGRLKVWGC-DIIVDWADPQ 113 (131)
Q Consensus 73 ~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~-~l~v~~a~~~ 113 (131)
.+...|.|.+...|..|...+++. .+.|+ .+..=+|.+.
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~--~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHST--SFNGKNELKLYFAQPG 90 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhc--ccCCCceEEEEEccCC
Confidence 345667899999999999999988 67777 6666666543
No 183
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.83 E-value=78 Score=18.21 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 69 NKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 69 ~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
++.+-..-||+.....+ ..+.++=+ .+.++.+.|+....+.
T Consensus 26 ~k~pl~mf~veL~p~~~---~k~i~~Ik--~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 26 TKKPLNMFFVELEPKPN---NKEIYKIK--TLCGQRVKVERPRKRR 66 (68)
T ss_pred CCCCceEEEEeeccCcc---ccceeehH--hhCCeEEEEecCCCCC
Confidence 34455677888876544 22334444 7788888888766544
No 184
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.49 E-value=90 Score=18.53 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-cC-CeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQ-YG-RVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~ 37 (131)
.-|+-.++.+.+..++++.+++ || .|..+..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 4566678899999999999998 66 46666655
No 185
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.87 E-value=98 Score=18.73 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=24.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-cC-CeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQ-YG-RVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~ 37 (131)
.-|.--.+.+.+..++++.+++ || .|.++..+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 3455667889999999999998 66 46777655
No 186
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.83 E-value=54 Score=23.85 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhh--ccCCeeEEEE
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKR 36 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~--~~G~v~~~~i 36 (131)
..-+.|||||...+..-|..++. .+|.+.-+.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 45688999999999999999987 4554444333
No 187
>PHA01632 hypothetical protein
Probab=31.06 E-value=60 Score=18.15 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhc
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQ 27 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~ 27 (131)
+.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345689999999999987764
No 188
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=29.62 E-value=97 Score=17.81 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHhhccCCeeEEEEe
Q psy1185 18 EEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 18 ~~~l~~~F~~~G~v~~~~i~ 37 (131)
+.+|.+.|-+-..|.++.+.
T Consensus 32 e~eler~fl~~P~v~e~~l~ 51 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALY 51 (64)
T ss_pred HHHhhhhccCCCCceEEEEE
Confidence 45677788777888888776
No 189
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=29.47 E-value=36 Score=18.98 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=9.0
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|....-.+|||||.-
T Consensus 3 G~V~~~~~~kgyGFI~~ 19 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITS 19 (66)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCceEEEE
Confidence 33444333367777766
No 190
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=29.17 E-value=89 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=22.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
.+.|+|+|..++..-|..+......+..+.++
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~ 138 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVM 138 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEE
Confidence 46799999999988888888642224444333
No 191
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=28.35 E-value=41 Score=19.23 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=8.6
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.=
T Consensus 4 G~Vk~f~~~kGfGFI~~ 20 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICP 20 (68)
T ss_pred eEEEEEeCCCCeEEEec
Confidence 44444444466666543
No 192
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=28.21 E-value=40 Score=19.40 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=9.1
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+.-.--+|||||.=
T Consensus 6 G~Vk~f~~~kGyGFI~~ 22 (69)
T PRK09507 6 GNVKWFNESKGFGFITP 22 (69)
T ss_pred eEEEEEeCCCCcEEEec
Confidence 44444444467776653
No 193
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=27.92 E-value=91 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=31.8
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCChHHHHhHhh
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVLM 126 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~ 126 (131)
+.|.+|++..-. .++||-|+.+..+|..-..++..+-++.
T Consensus 10 ~~A~ravE~aa~---~iGgRCIS~S~GNPT~lsG~elV~lIk~ 49 (180)
T PF14097_consen 10 EYAKRAVEIAAK---NIGGRCISQSAGNPTPLSGEELVELIKQ 49 (180)
T ss_pred HHHHHHHHHHHH---HhCcEEEeccCCCCCcCCHHHHHHHHHh
Confidence 567888888776 7899999999999988877776665553
No 194
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=27.64 E-value=44 Score=18.54 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=7.9
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.=
T Consensus 3 G~Vk~~~~~kGfGFI~~ 19 (65)
T cd04458 3 GTVKWFDDEKGFGFITP 19 (65)
T ss_pred EEEEEEECCCCeEEEec
Confidence 33443333356666554
No 195
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.56 E-value=38 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=10.0
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+.-.--+|||||+=
T Consensus 7 G~Vk~fn~~KGfGFI~~ 23 (70)
T PRK15464 7 GIVKTFDRKSGKGFIIP 23 (70)
T ss_pred EEEEEEECCCCeEEEcc
Confidence 44554444477777754
No 196
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.27 E-value=1e+02 Score=21.39 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=55.1
Q ss_pred CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCC-CCCcceEEEEeCCH----HhHHHHH
Q psy1185 16 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN-KKNRGFCFLEYDSH----KSASLAK 90 (131)
Q Consensus 16 ~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~-~~~~~~~fv~f~~~----~~a~~a~ 90 (131)
.+.+-.+..|.+||.+.++.+++|--...|+-.+--.-.--...++-...|... -...|.-.|++--+ +...+++
T Consensus 51 qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K~YP~egWEHIEiVlP~~peel~~~~~ 130 (185)
T COG3102 51 QTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNKRYPHEGWEHIEIVLPGDPEELNARAL 130 (185)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcCCCCCCcCceeEEEEcCCChHHHHHHHH
Confidence 345567778899999999988855433333222211101113344444444321 22246656665433 3344566
Q ss_pred HHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 91 KRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 91 ~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
..++.. .++.--|+|..+.|+-+..
T Consensus 131 ~l~~~~--~l~~~gi~vk~ssp~ge~e 155 (185)
T COG3102 131 ALLNDE--FLWELGISVKLSSPQGEHE 155 (185)
T ss_pred hhcchh--hcccCceEEEecCCCCccc
Confidence 666654 4555558999988877643
No 197
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=27.25 E-value=90 Score=23.35 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=23.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
+.|+|+|..++...+..+++....+....+|
T Consensus 104 ~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 104 VCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred EEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 5689999999999999998754445544444
No 198
>smart00457 MACPF membrane-attack complex / perforin.
Probab=26.96 E-value=1.5e+02 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=22.3
Q ss_pred eCCCCCCCHHHHHHHhhccCC--eeEEEEe
Q psy1185 10 RNLTQYCTEEKLKEAFEQYGR--VERVKRI 37 (131)
Q Consensus 10 ~nLp~~~t~~~l~~~F~~~G~--v~~~~i~ 37 (131)
..||...+..+...+|..||. |.++.+-
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~G 60 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGTHYITSATLG 60 (194)
T ss_pred HhCccccCHHHHHHHHHHhCCeEEEeeeee
Confidence 478888999999999999995 5555544
No 199
>PRK14998 cold shock-like protein CspD; Provisional
Probab=26.84 E-value=48 Score=19.39 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=10.0
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+.-.-.+|||||.=
T Consensus 4 G~Vkwfn~~kGfGFI~~ 20 (73)
T PRK14998 4 GTVKWFNNAKGFGFICP 20 (73)
T ss_pred eEEEEEeCCCceEEEec
Confidence 44555444577777754
No 200
>PRK10943 cold shock-like protein CspC; Provisional
Probab=26.53 E-value=44 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=7.6
Q ss_pred CCeeEEEEecCeEEEE
Q psy1185 29 GRVERVKRIKDYAFVH 44 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~ 44 (131)
|.|+.-.--+|||||.
T Consensus 6 G~Vk~f~~~kGfGFI~ 21 (69)
T PRK10943 6 GQVKWFNESKGFGFIT 21 (69)
T ss_pred eEEEEEeCCCCcEEEe
Confidence 3344433335666654
No 201
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.95 E-value=80 Score=15.69 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=15.0
Q ss_pred CCCHHHHHHHhhccCCeeE
Q psy1185 15 YCTEEKLKEAFEQYGRVER 33 (131)
Q Consensus 15 ~~t~~~l~~~F~~~G~v~~ 33 (131)
..++++|++.+..+|....
T Consensus 3 tWs~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCCHHHHHHHHHHcCCCCC
Confidence 4688999999999986443
No 202
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=25.91 E-value=50 Score=19.38 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=9.8
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.=
T Consensus 4 G~Vkwfn~~KGfGFI~~ 20 (74)
T PRK09937 4 GTVKWFNNAKGFGFICP 20 (74)
T ss_pred eEEEEEeCCCCeEEEee
Confidence 44444444477777754
No 203
>PHA01782 hypothetical protein
Probab=25.81 E-value=55 Score=22.55 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHhhccCCeeE
Q psy1185 11 NLTQYCTEEKLKEAFEQYGRVER 33 (131)
Q Consensus 11 nLp~~~t~~~l~~~F~~~G~v~~ 33 (131)
-+|...-...|.++|..||+|.-
T Consensus 62 aMPKGsRrnAL~~wlv~~Gkv~v 84 (177)
T PHA01782 62 AMPKGSRRNALAEWLVKFGKVQV 84 (177)
T ss_pred HccccchhhHHHHHHHHhCCccc
Confidence 57888899999999999998753
No 204
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.76 E-value=15 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCcceEEEEeCC-HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 71 KNRGFCFLEYDS-HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 71 ~~~~~~fv~f~~-~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
+++|||||...+ ..+.-=+-+.|++ -++|=++.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~---A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNG---AMDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTT---S-TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCC---CCCCCEEEEEEec
Confidence 357888888886 2222223355665 3555566665544
No 205
>PRK15463 cold shock-like protein CspF; Provisional
Probab=25.43 E-value=46 Score=19.27 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=9.8
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+.-.--+|||||+=
T Consensus 7 G~Vk~fn~~kGfGFI~~ 23 (70)
T PRK15463 7 GIVKTFDGKSGKGLITP 23 (70)
T ss_pred EEEEEEeCCCceEEEec
Confidence 44554444477777754
No 206
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.49 E-value=1e+02 Score=18.59 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCC
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGR 30 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~ 30 (131)
.-||--|....+++++++.|+..|.
T Consensus 50 Sy~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 50 SYYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred eEEEEEEeccCCHHHHHHHHHHhCc
Confidence 3455567788999999999999885
No 207
>PTZ00059 dynein light chain; Provisional
Probab=23.74 E-value=1.3e+02 Score=18.19 Aligned_cols=23 Identities=13% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHHhh-ccCCeeEEEEecCeE
Q psy1185 19 EKLKEAFE-QYGRVERVKRIKDYA 41 (131)
Q Consensus 19 ~~l~~~F~-~~G~v~~~~i~~~~~ 41 (131)
..|++.|. +||+..+|-+-++||
T Consensus 41 ~~IK~~fD~~yg~~WhciVG~~Fg 64 (90)
T PTZ00059 41 AYIKKEFDKKYNPTWHCIVGRNFG 64 (90)
T ss_pred HHHHHHHHhhcCCCCEEEEecCee
Confidence 45666776 489999998877664
No 208
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.73 E-value=1.8e+02 Score=17.66 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=13.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhh
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFE 26 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~ 26 (131)
.-||||+++..+-+.--..+-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~ 47 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTE 47 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHh
Confidence 3589999987765444344433
No 209
>KOG2416|consensus
Probab=23.66 E-value=1.6e+02 Score=24.77 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=36.4
Q ss_pred CCCCCcceEEEEeCCHHhHHHHHHHHhCCcceec-CcEEEEEecC
Q psy1185 68 DNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW-GCDIIVDWAD 111 (131)
Q Consensus 68 ~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~-g~~l~v~~a~ 111 (131)
|..+-+..|||.|.+.+.|.....+|||-.|..+ ++.|.+.|+.
T Consensus 476 WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 476 WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4455689999999999999999999999877554 5568998875
No 210
>PRK09890 cold shock protein CspG; Provisional
Probab=23.29 E-value=53 Score=18.95 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=9.6
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|....--+|||||.=
T Consensus 7 G~Vk~f~~~kGfGFI~~ 23 (70)
T PRK09890 7 GLVKWFNADKGFGFITP 23 (70)
T ss_pred EEEEEEECCCCcEEEec
Confidence 44544444477777654
No 211
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=23.20 E-value=1.5e+02 Score=16.55 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=17.1
Q ss_pred eecCcEEEEEecCCCCCCChHHHH
Q psy1185 99 KVWGCDIIVDWADPQEEPDTETMS 122 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~~~~~~ 122 (131)
.+++..+.++|+-+.++++++...
T Consensus 23 ~~~~G~l~vdfsT~~e~~k~el~p 46 (56)
T PF11113_consen 23 HYDDGKLKVDFSTPSEDRKEELAP 46 (56)
T ss_pred EEcCCeEEEEEeCCCcchhhHHHH
Confidence 444556999999998877665443
No 212
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.01 E-value=1.1e+02 Score=20.00 Aligned_cols=25 Identities=32% Similarity=0.580 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 11 NLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 11 nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
=||+.+ +.|.+.|++-|.|.++-.+
T Consensus 10 VlPPYT--nKLSDYfeSPGKI~svItv 34 (145)
T TIGR02542 10 VLPPYT--NKLSDYFESPGKIQSVITV 34 (145)
T ss_pred ecCCcc--chhhHHhcCCCceEEEEEE
Confidence 477776 4678999999999998655
No 213
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=22.90 E-value=54 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=9.5
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.=
T Consensus 7 G~Vk~f~~~kGfGFI~~ 23 (70)
T PRK10354 7 GIVKWFNADKGFGFITP 23 (70)
T ss_pred EEEEEEeCCCCcEEEec
Confidence 44444444477777763
No 214
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.56 E-value=1.3e+02 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCC
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQYGR 30 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~G~ 30 (131)
+.|+|+|..++...+..++..+|.
T Consensus 97 ~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 97 KVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred eEEEcCChhhHHHHHHHHhccCCC
Confidence 679999999999999999975554
No 215
>KOG0862|consensus
Probab=22.53 E-value=67 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=11.0
Q ss_pred ccCCeeEEEEecCeEEEEECCH
Q psy1185 27 QYGRVERVKRIKDYAFVHFEDR 48 (131)
Q Consensus 27 ~~G~v~~~~i~~~~~fv~~~~~ 48 (131)
.||.-..-.+.|.|+||+|.+-
T Consensus 98 ~~~~~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 98 SYGKNIIQPASRPYAFIEFDTF 119 (216)
T ss_pred hcccccCCccCCCeeEEehhHH
Confidence 4664333234466666666543
No 216
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.87 E-value=1.4e+02 Score=15.60 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCC
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGR 30 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~ 30 (131)
..+|+.+.+...+.++|.++...+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778877768889999999999986
No 217
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.25 E-value=67 Score=19.16 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCe
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRV 31 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v 31 (131)
++=-+.|+=.+++...|..||..-|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 344467888899999999999999964
No 218
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=21.16 E-value=1.1e+02 Score=19.63 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhc-c---CCeeEEEEecCeEEEEE
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQ-Y---GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~-~---G~v~~~~i~~~~~fv~~ 45 (131)
-.||+|+.+ ++++|.+.|.. | |....+.+.+.+++-.|
T Consensus 2 VsiWiG~f~---s~~el~~Y~e~~Ydedgd~i~s~F~~df~i~~y 43 (122)
T PF14112_consen 2 VSIWIGNFK---SEDELEEYFEIDYDEDGDSIPSQFCKDFGIDYY 43 (122)
T ss_pred eEEEEecCC---CHHHHHHHhCccccCCCCcccChHHHHcCCCcc
Confidence 369999775 88999999863 3 44444545544443333
No 219
>KOG1552|consensus
Probab=20.80 E-value=2.4e+02 Score=20.95 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHhhccCCeeEEEEe----cCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 20 KLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 20 ~l~~~F~~~G~v~~~~i~----~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
+-.++|...+.-.++.++ +||| ..+|++.-. -.+.|.+.|..+++.-.|
T Consensus 75 q~~~~~~~l~~~ln~nv~~~DYSGyG-------------------------~S~G~psE~--n~y~Di~avye~Lr~~~g 127 (258)
T KOG1552|consen 75 QMVELFKELSIFLNCNVVSYDYSGYG-------------------------RSSGKPSER--NLYADIKAVYEWLRNRYG 127 (258)
T ss_pred HHHHHHHHHhhcccceEEEEeccccc-------------------------ccCCCcccc--cchhhHHHHHHHHHhhcC
Confidence 555666666666677766 5554 223333322 477777888888877765
Q ss_pred --CcceecCcEE
Q psy1185 96 --GRLKVWGCDI 105 (131)
Q Consensus 96 --~~~~~~g~~l 105 (131)
.++.++|+.+
T Consensus 128 ~~~~Iil~G~Si 139 (258)
T KOG1552|consen 128 SPERIILYGQSI 139 (258)
T ss_pred CCceEEEEEecC
Confidence 4455566553
No 220
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=20.60 E-value=2.1e+02 Score=18.22 Aligned_cols=36 Identities=17% Similarity=0.469 Sum_probs=23.0
Q ss_pred EEEEeC-CCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHH
Q psy1185 6 VLYVRN-LTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQ 49 (131)
Q Consensus 6 ~l~v~n-Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~ 49 (131)
-|||+| +|. ....+.+++..|+.- -||-|++|+..+
T Consensus 73 fl~Vn~~~p~--~~~~~~~lY~~~kd~------DGfLyl~Ys~~~ 109 (112)
T cd01611 73 FLFVNNSLPP--TSATMSQLYEEHKDE------DGFLYMTYSSEE 109 (112)
T ss_pred EEEECCccCC--chhHHHHHHHHhCCC------CCEEEEEEeccc
Confidence 477887 332 456778888888752 456666665543
No 221
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.15 E-value=2.1e+02 Score=19.01 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcc
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQY 28 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~ 28 (131)
-+.++|+|...+...+..++...
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcC
Confidence 35689999999988888888754
Done!