Query psy1185
Match_columns 131
No_of_seqs 107 out of 1377
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.9 3.6E-25 1.2E-29 155.5 10.7 109 4-117 15-185 (213)
2 2cjk_A Nuclear polyadenylated 99.9 1.1E-23 3.6E-28 141.8 12.3 108 3-114 2-167 (167)
3 3md3_A Nuclear and cytoplasmic 99.9 1.5E-23 5.2E-28 140.5 12.9 105 5-112 1-166 (166)
4 4fxv_A ELAV-like protein 1; RN 99.9 1E-23 3.5E-28 132.2 11.2 81 3-112 18-98 (99)
5 1l3k_A Heterogeneous nuclear r 99.9 6.7E-23 2.3E-27 141.1 13.4 111 4-118 13-188 (196)
6 2qfj_A FBP-interacting repress 99.9 1.1E-22 3.7E-27 142.0 14.2 111 4-117 28-209 (216)
7 3nmr_A Cugbp ELAV-like family 99.9 1.2E-22 4.2E-27 137.2 13.7 106 2-111 1-175 (175)
8 2lxi_A RNA-binding protein 10; 99.9 1.2E-23 4.1E-28 129.9 7.9 87 4-118 1-88 (91)
9 1b7f_A Protein (SXL-lethal pro 99.9 1.5E-22 5.2E-27 136.1 13.3 105 3-110 2-168 (168)
10 1fxl_A Paraneoplastic encephal 99.9 3.3E-22 1.1E-26 134.0 13.6 104 4-110 2-167 (167)
11 4f25_A Polyadenylate-binding p 99.9 1.1E-22 3.9E-27 130.5 10.7 85 4-119 5-89 (115)
12 2lkz_A RNA-binding protein 5; 99.9 8.1E-23 2.8E-27 127.3 9.3 83 3-112 8-94 (95)
13 1fje_B Nucleolin RBD12, protei 99.9 2.3E-22 8E-27 136.4 9.9 108 3-114 12-175 (175)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.3E-22 2.8E-26 120.0 11.1 84 2-114 4-87 (87)
15 3md1_A Nuclear and cytoplasmic 99.9 1.2E-21 4.1E-26 118.3 11.6 82 4-114 1-82 (83)
16 3r27_A HnRNP L, heterogeneous 99.9 9.8E-22 3.4E-26 123.2 11.4 79 3-114 20-98 (100)
17 2g4b_A Splicing factor U2AF 65 99.9 1.8E-21 6.2E-26 131.4 13.6 107 2-111 2-172 (172)
18 1sjq_A Polypyrimidine tract-bi 99.9 4.3E-22 1.5E-26 126.0 9.4 83 3-118 15-97 (105)
19 2yh0_A Splicing factor U2AF 65 99.9 2.5E-21 8.5E-26 133.4 13.8 113 1-116 1-197 (198)
20 2dnz_A Probable RNA-binding pr 99.9 2.7E-21 9.4E-26 119.5 12.0 87 2-117 3-89 (95)
21 1whw_A Hypothetical protein ri 99.9 3.1E-21 1.1E-25 120.2 11.9 86 3-117 7-92 (99)
22 3s8s_A Histone-lysine N-methyl 99.9 2.1E-21 7.3E-26 123.8 11.4 83 3-114 5-87 (110)
23 2dis_A Unnamed protein product 99.9 5.4E-22 1.8E-26 125.7 8.2 96 3-125 7-104 (109)
24 2x1f_A MRNA 3'-END-processing 99.9 3.6E-21 1.2E-25 119.5 11.6 86 4-118 2-87 (96)
25 1x5t_A Splicing factor 3B subu 99.9 1.8E-21 6.1E-26 120.6 10.2 87 2-117 3-90 (96)
26 1p27_B RNA-binding protein 8A; 99.9 2.1E-21 7.2E-26 122.4 10.5 85 3-116 22-106 (106)
27 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.8E-21 9.4E-26 117.2 10.3 80 3-111 6-85 (85)
28 2cq0_A Eukaryotic translation 99.9 2.6E-21 8.8E-26 121.5 10.3 86 3-117 14-99 (103)
29 3p5t_L Cleavage and polyadenyl 99.9 4.1E-22 1.4E-26 122.5 6.5 84 5-117 2-87 (90)
30 2dgs_A DAZ-associated protein 99.9 4.7E-21 1.6E-25 119.5 11.4 85 3-117 9-93 (99)
31 3smz_A Protein raver-1, ribonu 99.9 8.9E-21 3E-25 137.7 14.6 111 3-117 94-268 (284)
32 2cqi_A Nucleolysin TIAR; RNA r 99.9 5.6E-21 1.9E-25 119.9 11.7 85 3-118 14-98 (103)
33 2dgo_A Cytotoxic granule-assoc 99.9 7.4E-21 2.5E-25 121.6 12.0 86 3-117 14-99 (115)
34 4a8x_A RNA-binding protein wit 99.9 3.6E-21 1.2E-25 117.3 10.0 84 3-115 3-87 (88)
35 1oo0_B CG8781-PA, drosophila Y 99.9 5.6E-21 1.9E-25 121.2 11.2 85 3-116 25-109 (110)
36 2dgx_A KIAA0430 protein; RRM d 99.9 7.4E-21 2.5E-25 118.2 11.5 84 2-117 7-94 (96)
37 2dnm_A SRP46 splicing factor; 99.9 3.5E-21 1.2E-25 120.9 10.1 86 3-117 12-97 (103)
38 1x4d_A Matrin 3; structural ge 99.9 1.1E-21 3.7E-26 123.6 7.7 82 3-117 14-96 (102)
39 1x5s_A Cold-inducible RNA-bind 99.9 4.1E-21 1.4E-25 120.3 10.3 86 3-117 11-96 (102)
40 2do4_A Squamous cell carcinoma 99.9 6.5E-21 2.2E-25 119.0 11.0 83 4-116 17-99 (100)
41 1x5u_A Splicing factor 3B subu 99.9 6.1E-21 2.1E-25 120.1 10.8 85 3-116 14-98 (105)
42 3smz_A Protein raver-1, ribonu 99.9 1.5E-20 5.1E-25 136.5 14.4 109 3-115 21-177 (284)
43 2cpz_A CUG triplet repeat RNA- 99.9 5.1E-21 1.7E-25 122.4 10.5 85 4-117 25-109 (115)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.5E-21 1.2E-25 120.6 9.5 86 3-117 11-96 (102)
45 3sde_A Paraspeckle component 1 99.9 5.2E-21 1.8E-25 138.0 11.8 109 3-114 21-180 (261)
46 2cq3_A RNA-binding protein 9; 99.9 1.6E-20 5.6E-25 117.8 12.4 84 3-117 14-97 (103)
47 1x4h_A RNA-binding protein 28; 99.9 8.1E-21 2.8E-25 120.5 11.1 86 3-117 14-105 (111)
48 2dgv_A HnRNP M, heterogeneous 99.9 5.6E-21 1.9E-25 117.5 10.0 85 2-117 6-90 (92)
49 2jrs_A RNA-binding protein 39; 99.9 5.1E-21 1.7E-25 121.5 10.1 83 3-114 25-107 (108)
50 3ucg_A Polyadenylate-binding p 99.9 9.8E-21 3.4E-25 115.6 10.8 82 4-115 6-87 (89)
51 2cpf_A RNA binding motif prote 99.9 4.8E-21 1.6E-25 119.2 9.2 90 2-117 3-92 (98)
52 2d9p_A Polyadenylate-binding p 99.8 6.3E-21 2.2E-25 119.7 9.8 84 3-117 14-97 (103)
53 2cq1_A PTB-like protein L; RRM 99.8 9.3E-21 3.2E-25 119.2 10.5 81 4-117 15-95 (101)
54 2ghp_A U4/U6 snRNA-associated 99.8 1.6E-20 5.6E-25 136.8 13.4 109 4-116 41-200 (292)
55 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-20 3.8E-25 119.1 10.8 86 3-117 12-100 (106)
56 1wex_A Hypothetical protein (r 99.8 8.8E-21 3E-25 119.9 10.3 80 4-116 15-94 (104)
57 2e5h_A Zinc finger CCHC-type a 99.8 1E-20 3.5E-25 116.7 10.1 80 3-111 15-94 (94)
58 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-20 4.1E-25 118.7 10.6 85 3-117 14-101 (105)
59 2div_A TRNA selenocysteine ass 99.8 7.5E-21 2.6E-25 118.5 9.5 85 3-116 8-97 (99)
60 2fy1_A RNA-binding motif prote 99.8 1.4E-20 4.9E-25 120.8 11.0 84 3-116 6-89 (116)
61 2ad9_A Polypyrimidine tract-bi 99.8 6E-21 2E-25 123.3 9.2 81 4-117 31-111 (119)
62 1x4a_A Splicing factor, argini 99.8 2.6E-20 9E-25 118.0 11.9 83 3-117 21-103 (109)
63 3ns6_A Eukaryotic translation 99.8 1.6E-21 5.6E-26 122.1 6.2 81 4-113 6-93 (100)
64 2cqc_A Arginine/serine-rich sp 99.8 1.4E-20 4.9E-25 116.2 10.3 81 3-112 14-94 (95)
65 2cph_A RNA binding motif prote 99.8 2.2E-20 7.7E-25 117.7 11.2 87 3-117 14-101 (107)
66 2cpe_A RNA-binding protein EWS 99.8 1.9E-20 6.4E-25 119.3 10.7 86 3-117 14-107 (113)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 2.9E-20 1E-24 116.9 11.5 84 3-117 14-98 (104)
68 2dgu_A Heterogeneous nuclear r 99.8 2.1E-20 7E-25 117.5 10.4 80 1-117 8-87 (103)
69 2err_A Ataxin-2-binding protei 99.8 1.9E-20 6.5E-25 119.0 10.2 81 3-114 28-108 (109)
70 2kxn_B Transformer-2 protein h 99.8 1.2E-20 4.1E-25 123.4 9.3 84 3-115 45-128 (129)
71 2la6_A RNA-binding protein FUS 99.8 2.2E-20 7.5E-25 116.5 10.1 80 3-111 12-99 (99)
72 2dnq_A RNA-binding protein 4B; 99.8 5E-20 1.7E-24 113.0 11.4 78 3-117 7-84 (90)
73 1why_A Hypothetical protein ri 99.8 3.6E-20 1.2E-24 115.1 10.9 79 3-116 16-96 (97)
74 3n9u_C Cleavage and polyadenyl 99.8 7.4E-21 2.5E-25 128.2 8.2 83 3-114 54-138 (156)
75 2ywk_A Putative RNA-binding pr 99.8 3.5E-20 1.2E-24 114.5 10.5 80 3-112 15-94 (95)
76 2dng_A Eukaryotic translation 99.8 4.4E-20 1.5E-24 115.9 11.0 84 3-117 14-97 (103)
77 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.8E-20 1.7E-24 123.7 12.0 86 2-116 37-122 (156)
78 3ex7_B RNA-binding protein 8A; 99.8 3E-20 1E-24 120.5 10.6 86 3-117 21-106 (126)
79 2ghp_A U4/U6 snRNA-associated 99.8 5E-20 1.7E-24 134.2 12.9 109 3-114 116-292 (292)
80 1u6f_A Tcubp1, RNA-binding pro 99.8 2.9E-20 9.9E-25 122.4 10.5 86 3-117 41-126 (139)
81 2kn4_A Immunoglobulin G-bindin 99.8 3.2E-20 1.1E-24 124.6 10.8 85 4-117 70-154 (158)
82 2rs2_A Musashi-1, RNA-binding 99.8 3.4E-20 1.1E-24 117.9 10.3 84 3-116 24-107 (109)
83 3ulh_A THO complex subunit 4; 99.8 6.5E-20 2.2E-24 115.7 11.4 80 3-112 28-107 (107)
84 2dhg_A TRNA selenocysteine ass 99.8 1.9E-20 6.5E-25 117.6 8.9 85 3-117 8-94 (104)
85 1s79_A Lupus LA protein; RRM, 99.8 2.1E-20 7.2E-25 117.9 9.0 78 4-112 11-88 (103)
86 2ki2_A SS-DNA binding protein 99.8 2.8E-21 9.5E-26 118.5 4.8 84 4-117 1-84 (90)
87 1p1t_A Cleavage stimulation fa 99.8 1.4E-20 4.8E-25 118.1 8.1 84 4-116 8-91 (104)
88 2cqd_A RNA-binding region cont 99.8 4.6E-20 1.6E-24 118.1 10.7 84 3-116 16-99 (116)
89 1x4f_A Matrin 3; structural ge 99.8 1.2E-20 4.2E-25 120.6 7.7 81 3-116 24-105 (112)
90 2dgt_A RNA-binding protein 30; 99.8 8.3E-20 2.8E-24 112.4 11.2 78 3-117 9-86 (92)
91 2adc_A Polypyrimidine tract-bi 99.8 1.5E-19 5.3E-24 128.0 14.1 109 3-113 33-228 (229)
92 1x4g_A Nucleolysin TIAR; struc 99.8 7.4E-20 2.5E-24 116.0 11.2 80 3-117 24-103 (109)
93 2khc_A Testis-specific RNP-typ 99.8 2.5E-20 8.6E-25 119.6 9.1 80 3-111 39-118 (118)
94 2jvr_A Nucleolar protein 3; RN 99.8 4.1E-20 1.4E-24 118.1 9.8 80 3-115 27-107 (111)
95 2nlw_A Eukaryotic translation 99.8 2.9E-20 9.8E-25 117.4 9.1 80 4-114 15-101 (105)
96 2kt5_A RNA and export factor-b 99.8 1.1E-19 3.9E-24 117.6 12.0 86 2-117 33-118 (124)
97 2la4_A Nuclear and cytoplasmic 99.8 3.7E-20 1.3E-24 115.8 9.3 76 3-113 26-101 (101)
98 2dnp_A RNA-binding protein 14; 99.8 8.9E-20 3E-24 111.8 10.7 78 3-117 8-85 (90)
99 2dh8_A DAZ-associated protein 99.8 2.2E-20 7.7E-25 117.5 8.1 85 3-117 15-99 (105)
100 2wbr_A GW182, gawky, LD47780P; 99.8 5.6E-20 1.9E-24 112.3 9.5 72 4-110 7-78 (89)
101 2do0_A HnRNP M, heterogeneous 99.8 1.1E-19 3.8E-24 115.8 11.4 83 4-116 15-97 (114)
102 2e5j_A Methenyltetrahydrofolat 99.8 3.7E-20 1.3E-24 115.1 8.9 78 4-115 19-96 (97)
103 2a3j_A U1 small nuclear ribonu 99.8 5.8E-20 2E-24 120.0 10.2 79 4-114 29-111 (127)
104 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-19 4.9E-24 112.8 11.6 80 1-117 12-93 (99)
105 2mss_A Protein (musashi1); RNA 99.8 1.8E-20 6E-25 111.2 7.0 75 6-110 1-75 (75)
106 1x4b_A Heterogeneous nuclear r 99.8 6.8E-20 2.3E-24 117.3 10.2 84 4-117 27-110 (116)
107 1nu4_A U1A RNA binding domain; 99.8 3.5E-20 1.2E-24 114.9 8.6 81 3-115 7-91 (97)
108 3s7r_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 111.4 9.8 78 3-110 10-87 (87)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.5E-20 5.1E-25 117.6 6.9 81 3-114 18-99 (100)
110 2cpj_A Non-POU domain-containi 99.8 7.3E-20 2.5E-24 114.1 10.0 80 3-117 14-93 (99)
111 2cqp_A RNA-binding protein 12; 99.8 2.7E-20 9.3E-25 115.7 7.8 83 3-114 14-96 (98)
112 2m2b_A RNA-binding protein 10; 99.8 1.4E-20 4.8E-25 123.2 6.8 84 4-115 23-110 (131)
113 2cqg_A TDP-43, TAR DNA-binding 99.8 1.4E-19 4.8E-24 113.5 11.0 84 3-117 14-97 (103)
114 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.9E-20 6.5E-25 111.4 6.5 76 5-110 1-76 (77)
115 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.3E-25 114.4 5.7 81 3-112 4-84 (85)
116 2lea_A Serine/arginine-rich sp 99.8 2.4E-20 8.3E-25 122.8 7.4 85 4-117 47-131 (135)
117 2jwn_A Embryonic polyadenylate 99.8 8.1E-20 2.8E-24 118.1 9.8 83 4-116 36-118 (124)
118 2cq4_A RNA binding motif prote 99.8 4.8E-20 1.7E-24 117.6 8.6 81 4-114 25-105 (114)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.9E-24 123.1 10.8 86 4-118 72-157 (165)
120 2cpi_A CCR4-NOT transcription 99.8 5.2E-20 1.8E-24 117.3 8.4 87 3-115 14-103 (111)
121 2ytc_A PRE-mRNA-splicing facto 99.8 1.2E-19 4.1E-24 109.9 9.6 74 3-111 11-85 (85)
122 2dgw_A Probable RNA-binding pr 99.8 1.7E-19 5.9E-24 110.7 10.3 81 3-115 9-89 (91)
123 2ek1_A RNA-binding protein 12; 99.8 4.2E-20 1.4E-24 114.2 7.5 81 3-112 14-94 (95)
124 1qm9_A Polypyrimidine tract-bi 99.8 1.5E-19 5.3E-24 124.8 11.1 109 3-113 2-197 (198)
125 2xnq_A Nuclear polyadenylated 99.8 3.2E-19 1.1E-23 111.1 11.3 75 3-114 21-96 (97)
126 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-19 5.7E-24 115.2 10.2 80 3-114 7-86 (115)
127 2kvi_A Nuclear polyadenylated 99.8 1.2E-19 4.2E-24 112.6 9.3 79 3-118 9-88 (96)
128 2hvz_A Splicing factor, argini 99.8 1.2E-19 4.1E-24 113.4 9.2 78 5-116 1-78 (101)
129 2krb_A Eukaryotic translation 99.8 3.4E-20 1.2E-24 111.7 6.3 73 4-107 1-80 (81)
130 1whx_A Hypothetical protein ri 99.8 1.6E-19 5.6E-24 115.1 9.6 76 4-114 10-85 (111)
131 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-19 4.2E-24 111.8 8.7 79 3-117 7-87 (93)
132 2jvo_A Nucleolar protein 3; nu 99.8 2.6E-19 8.8E-24 113.7 10.4 77 3-116 30-106 (108)
133 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-19 6.7E-24 118.2 10.2 79 3-110 62-140 (140)
134 2cpx_A Hypothetical protein FL 99.8 1.2E-19 4E-24 115.9 8.8 81 4-117 25-109 (115)
135 1x5o_A RNA binding motif, sing 99.8 2.2E-19 7.7E-24 114.5 9.8 82 3-114 24-113 (114)
136 3d2w_A TAR DNA-binding protein 99.8 5E-19 1.7E-23 108.7 10.0 76 4-115 11-86 (89)
137 1x4c_A Splicing factor, argini 99.8 8.5E-19 2.9E-23 111.0 11.3 78 3-116 14-96 (108)
138 2fc9_A NCL protein; structure 99.8 3.8E-19 1.3E-23 111.1 9.5 82 3-117 14-95 (101)
139 1fj7_A Nucleolin RBD1, protein 99.8 2.8E-20 9.7E-25 116.3 4.3 83 3-116 16-98 (101)
140 2i2y_A Fusion protein consists 99.8 3.8E-19 1.3E-23 118.6 9.5 78 3-114 72-149 (150)
141 1iqt_A AUF1, heterogeneous nuc 99.8 1.2E-19 4E-24 107.6 5.9 75 6-110 1-75 (75)
142 1sjr_A Polypyrimidine tract-bi 99.8 5.7E-19 1.9E-23 119.5 9.6 79 3-114 45-125 (164)
143 2cpy_A RNA-binding protein 12; 99.8 2.1E-19 7.1E-24 114.9 7.0 80 3-113 14-94 (114)
144 3egn_A RNA-binding protein 40; 99.8 3.9E-19 1.3E-23 117.7 8.5 83 3-117 44-134 (143)
145 1wg5_A Heterogeneous nuclear r 99.8 6.7E-19 2.3E-23 110.8 9.1 81 3-114 14-95 (104)
146 1wf1_A RNA-binding protein RAL 99.8 9.9E-19 3.4E-23 110.9 9.9 76 4-116 27-103 (110)
147 3zzy_A Polypyrimidine tract-bi 99.8 2.1E-18 7.2E-23 112.8 11.3 79 2-114 26-107 (130)
148 2fc8_A NCL protein; structure 99.8 1.1E-18 3.6E-23 109.2 9.5 83 3-117 14-96 (102)
149 1fjc_A Nucleolin RBD2, protein 99.8 4.6E-19 1.6E-23 109.7 7.7 79 4-116 16-94 (96)
150 2e44_A Insulin-like growth fac 99.8 1.3E-18 4.5E-23 107.7 9.6 79 3-114 14-93 (96)
151 3q2s_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 126.7 7.9 82 3-113 67-150 (229)
152 2xs2_A Deleted in azoospermia- 99.8 5.4E-19 1.9E-23 110.6 7.2 81 4-116 9-89 (102)
153 2db1_A Heterogeneous nuclear r 99.8 6.6E-19 2.2E-23 113.4 7.8 79 3-112 16-97 (118)
154 1x5p_A Negative elongation fac 99.8 4.2E-18 1.4E-22 105.7 10.9 78 3-117 14-91 (97)
155 1wez_A HnRNP H', FTP-3, hetero 99.8 9.8E-19 3.3E-23 109.9 8.0 81 3-115 14-94 (102)
156 2hgl_A HNRPF protein, heteroge 99.8 4.5E-19 1.5E-23 117.0 6.7 79 3-112 43-124 (136)
157 2lcw_A RNA-binding protein FUS 99.6 2E-20 6.8E-25 119.9 0.0 86 3-117 6-99 (116)
158 2e5i_A Heterogeneous nuclear r 99.8 6.5E-18 2.2E-22 109.7 11.7 78 2-114 23-103 (124)
159 2f3j_A RNA and export factor b 99.8 3E-18 1E-22 117.6 10.3 83 3-115 87-169 (177)
160 1wg1_A KIAA1579 protein, homol 99.8 2.2E-18 7.5E-23 105.3 8.7 76 3-114 4-79 (88)
161 1wf0_A TDP-43, TAR DNA-binding 99.8 3.1E-18 1E-22 104.5 9.2 80 2-117 3-82 (88)
162 2e5g_A U6 snRNA-specific termi 99.8 3.8E-18 1.3E-22 105.4 9.3 80 3-117 7-86 (94)
163 2cq2_A Hypothetical protein LO 99.8 2.8E-18 9.7E-23 109.8 8.9 77 4-115 25-108 (114)
164 2lmi_A GRSF-1, G-rich sequence 99.8 4.3E-19 1.5E-23 112.3 4.9 79 3-112 10-91 (107)
165 3u1l_A PRE-mRNA-splicing facto 99.8 2.3E-18 8E-23 123.1 9.0 81 2-117 132-233 (240)
166 1wel_A RNA-binding protein 12; 99.8 3.7E-19 1.3E-23 115.2 4.4 80 3-112 24-103 (124)
167 3tyt_A Heterogeneous nuclear r 99.8 8.8E-18 3E-22 117.6 11.3 78 2-113 2-80 (205)
168 2dnn_A RNA-binding protein 12; 99.8 8.6E-18 3E-22 106.9 9.7 77 4-112 16-92 (109)
169 2diu_A KIAA0430 protein; struc 99.7 1.2E-17 4.1E-22 102.9 9.5 73 5-116 10-87 (96)
170 3pgw_S U1-70K; protein-RNA com 99.7 1.5E-17 5.1E-22 128.1 11.3 83 4-115 102-184 (437)
171 2bz2_A Negative elongation fac 99.7 1.8E-17 6.3E-22 107.1 9.5 78 3-117 38-115 (121)
172 2hgn_A Heterogeneous nuclear r 99.7 2.1E-18 7.3E-23 114.1 4.5 81 3-115 45-125 (139)
173 2hzc_A Splicing factor U2AF 65 99.7 2.8E-17 9.6E-22 99.7 9.1 71 3-109 5-86 (87)
174 2dnl_A Cytoplasmic polyadenyla 99.7 1.8E-17 6.2E-22 105.9 8.6 77 3-111 7-86 (114)
175 2dha_A FLJ20171 protein; RRM d 99.7 4.6E-18 1.6E-22 110.4 5.3 78 3-111 22-103 (123)
176 2j8a_A Histone-lysine N-methyl 99.7 2.1E-17 7.3E-22 107.3 8.3 79 5-112 3-95 (136)
177 3beg_B Splicing factor, argini 99.7 2E-17 7E-22 105.9 8.0 77 3-115 15-96 (115)
178 2hgm_A HNRPF protein, heteroge 99.7 2.1E-17 7.3E-22 107.6 7.5 78 3-112 41-120 (126)
179 3pgw_A U1-A; protein-RNA compl 99.7 8.2E-17 2.8E-21 116.6 11.2 81 3-115 8-92 (282)
180 2voo_A Lupus LA protein; RNA-b 99.7 7.2E-17 2.5E-21 112.0 10.1 80 4-114 109-188 (193)
181 2pe8_A Splicing factor 45; RRM 99.7 9.5E-16 3.2E-20 96.8 11.1 82 3-112 7-93 (105)
182 3pgw_A U1-A; protein-RNA compl 99.7 4.6E-16 1.6E-20 112.6 10.6 74 4-111 207-281 (282)
183 2dit_A HIV TAT specific factor 99.6 1.5E-15 5.2E-20 96.6 10.4 81 3-116 14-105 (112)
184 3tyt_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 105.5 8.4 76 4-110 123-204 (205)
185 1jmt_A Splicing factor U2AF 35 99.6 1.4E-15 4.8E-20 95.8 4.1 71 10-110 21-103 (104)
186 3v4m_A Splicing factor U2AF 65 99.5 5E-14 1.7E-18 88.8 9.0 82 4-112 5-96 (105)
187 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.9E-13 6.5E-18 85.5 11.3 67 14-116 27-93 (100)
188 3tht_A Alkylated DNA repair pr 99.5 7.7E-14 2.6E-18 104.4 9.5 75 4-111 18-97 (345)
189 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.6E-18 88.6 8.4 84 3-111 19-107 (118)
190 1owx_A Lupus LA protein, SS-B, 99.4 1.8E-12 6E-17 83.5 9.2 81 1-114 15-97 (121)
191 3s6e_A RNA-binding protein 39; 99.4 1.6E-12 5.5E-17 83.0 8.0 75 4-111 7-91 (114)
192 1l3k_A Heterogeneous nuclear r 99.2 2E-11 7E-16 83.3 7.6 52 4-55 104-163 (196)
193 4f02_A Polyadenylate-binding p 99.2 2.1E-11 7.1E-16 85.1 7.7 52 4-55 103-160 (213)
194 3nmr_A Cugbp ELAV-like family 99.2 2.5E-11 8.6E-16 81.3 7.6 53 3-55 94-153 (175)
195 3md3_A Nuclear and cytoplasmic 99.2 4.5E-11 1.5E-15 79.3 7.9 53 3-55 86-146 (166)
196 2cjk_A Nuclear polyadenylated 99.2 2E-11 6.9E-16 81.4 5.9 53 4-56 87-147 (167)
197 2yh0_A Splicing factor U2AF 65 99.2 6.7E-11 2.3E-15 80.9 7.8 52 3-54 113-172 (198)
198 2dnr_A Synaptojanin-1; RRM dom 99.2 1.1E-10 3.9E-15 71.1 7.8 72 4-113 7-86 (91)
199 2qfj_A FBP-interacting repress 99.2 7E-11 2.4E-15 81.8 7.8 51 4-54 125-183 (216)
200 2g4b_A Splicing factor U2AF 65 99.2 4.5E-11 1.5E-15 80.0 6.6 52 4-55 94-153 (172)
201 1b7f_A Protein (SXL-lethal pro 99.2 9.3E-11 3.2E-15 78.1 7.8 53 3-55 88-148 (168)
202 1fxl_A Paraneoplastic encephal 99.2 1.1E-10 3.7E-15 77.5 7.8 52 4-55 88-147 (167)
203 1qm9_A Polypyrimidine tract-bi 99.1 2.2E-10 7.7E-15 78.5 7.0 52 4-55 120-175 (198)
204 2adc_A Polypyrimidine tract-bi 99.1 3.3E-10 1.1E-14 79.8 8.0 52 4-55 151-206 (229)
205 3sde_A Paraspeckle component 1 99.1 3E-10 1E-14 81.5 7.6 51 4-54 96-153 (261)
206 3dxb_A Thioredoxin N-terminall 99.0 1.1E-09 3.6E-14 76.8 8.2 71 16-111 141-211 (222)
207 1fje_B Nucleolin RBD12, protei 99.0 5.6E-10 1.9E-14 75.0 5.9 53 4-56 99-154 (175)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 7.1E-09 2.4E-13 63.5 7.7 70 4-111 15-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 1.4E-06 4.8E-11 54.6 9.2 72 3-109 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.0 4.8E-05 1.6E-09 47.2 7.6 76 4-114 5-85 (104)
211 1uw4_A UPF3X; nonsense mediate 97.6 0.00061 2.1E-08 41.3 8.7 67 5-96 2-68 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.6 0.0011 3.8E-08 41.0 9.6 70 3-110 7-81 (104)
213 1whv_A Poly(A)-specific ribonu 97.2 0.0013 4.3E-08 40.3 6.5 56 3-94 15-70 (100)
214 3ctr_A Poly(A)-specific ribonu 97.2 0.00087 3E-08 41.1 5.2 57 2-94 4-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0039 1.3E-07 39.5 8.2 69 4-109 24-93 (119)
216 3pq1_A Poly(A) RNA polymerase; 96.7 0.0012 4.1E-08 51.1 3.9 33 4-37 53-85 (464)
217 2l08_A Regulator of nonsense t 96.5 0.008 2.8E-07 36.7 5.8 68 4-96 9-76 (97)
218 3p3d_A Nucleoporin 53; structu 95.8 0.016 5.4E-07 37.3 4.7 89 3-110 6-96 (132)
219 2i2y_A Fusion protein consists 95.1 0.01 3.4E-07 38.5 2.0 40 70-112 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 95.0 0.029 1E-06 36.4 4.2 26 70-95 10-35 (158)
221 3d45_A Poly(A)-specific ribonu 93.4 0.5 1.7E-05 36.9 8.7 58 3-96 439-496 (507)
222 2lxi_A RNA-binding protein 10; 93.4 0.047 1.6E-06 32.3 2.3 19 37-55 43-61 (91)
223 3d2w_A TAR DNA-binding protein 93.3 0.056 1.9E-06 31.8 2.5 20 37-56 47-66 (89)
224 2wbr_A GW182, gawky, LD47780P; 93.0 0.069 2.4E-06 32.0 2.6 18 38-55 43-60 (89)
225 2do4_A Squamous cell carcinoma 92.8 0.13 4.4E-06 30.6 3.7 19 37-55 57-75 (100)
226 2lkz_A RNA-binding protein 5; 92.7 0.054 1.8E-06 32.5 1.9 18 37-54 52-69 (95)
227 2db1_A Heterogeneous nuclear r 92.6 0.23 8E-06 30.7 4.9 50 37-95 60-109 (118)
228 2krb_A Eukaryotic translation 92.3 0.099 3.4E-06 29.9 2.6 20 37-56 46-65 (81)
229 2hgl_A HNRPF protein, heteroge 92.2 0.23 7.9E-06 31.8 4.6 46 37-91 87-132 (136)
230 2d9o_A DNAJ (HSP40) homolog, s 92.0 0.11 3.7E-06 31.6 2.6 32 23-54 39-70 (100)
231 2dnn_A RNA-binding protein 12; 92.0 0.099 3.4E-06 32.2 2.5 24 37-60 55-78 (109)
232 1wel_A RNA-binding protein 12; 91.8 0.31 1.1E-05 30.2 4.7 47 38-93 67-113 (124)
233 1s79_A Lupus LA protein; RRM, 91.7 0.12 4.1E-06 31.4 2.6 22 37-58 51-72 (103)
234 4fxv_A ELAV-like protein 1; RN 91.6 0.1 3.5E-06 31.3 2.3 19 37-55 60-78 (99)
235 2dng_A Eukaryotic translation 91.5 0.12 4.2E-06 30.9 2.6 20 37-56 55-74 (103)
236 4f25_A Polyadenylate-binding p 91.4 0.11 3.7E-06 32.0 2.2 18 37-54 44-61 (115)
237 3ns6_A Eukaryotic translation 91.3 0.14 4.8E-06 30.6 2.7 19 37-55 53-71 (100)
238 2mss_A Protein (musashi1); RNA 91.1 0.13 4.5E-06 28.7 2.2 22 37-58 40-61 (75)
239 2cpy_A RNA-binding protein 12; 91.0 0.16 5.5E-06 31.1 2.8 46 37-91 56-101 (114)
240 1x4e_A RNA binding motif, sing 91.0 0.16 5.6E-06 29.1 2.6 18 37-54 46-63 (85)
241 1wi8_A EIF-4B, eukaryotic tran 90.9 0.15 5.2E-06 30.5 2.6 20 37-56 56-75 (104)
242 3ucg_A Polyadenylate-binding p 90.8 0.15 5.1E-06 29.4 2.3 21 38-58 48-68 (89)
243 1fj7_A Nucleolin RBD1, protein 90.7 0.17 5.9E-06 30.0 2.6 18 38-55 58-75 (101)
244 3mdf_A Peptidyl-prolyl CIS-tra 90.7 0.19 6.3E-06 28.7 2.7 19 37-55 48-66 (85)
245 1iqt_A AUF1, heterogeneous nuc 90.6 0.11 3.9E-06 29.0 1.6 21 37-57 40-60 (75)
246 3s8s_A Histone-lysine N-methyl 90.5 0.15 5.2E-06 31.3 2.3 19 37-55 47-65 (110)
247 3bs9_A Nucleolysin TIA-1 isofo 90.5 0.16 5.5E-06 29.2 2.3 19 37-55 47-65 (87)
248 1wg5_A Heterogeneous nuclear r 90.5 0.19 6.5E-06 30.2 2.7 20 37-56 56-75 (104)
249 1x5t_A Splicing factor 3B subu 90.5 0.17 5.9E-06 29.7 2.4 19 37-55 47-65 (96)
250 2cpi_A CCR4-NOT transcription 90.4 0.17 5.7E-06 30.9 2.4 18 37-54 62-79 (111)
251 4a8x_A RNA-binding protein wit 90.4 0.2 7E-06 28.7 2.7 18 37-54 46-63 (88)
252 2cqc_A Arginine/serine-rich sp 90.3 0.31 1.1E-05 28.4 3.5 19 37-55 56-74 (95)
253 2a3j_A U1 small nuclear ribonu 90.3 0.17 5.8E-06 32.0 2.4 19 37-55 71-89 (127)
254 1wf0_A TDP-43, TAR DNA-binding 90.3 0.12 4.2E-06 29.9 1.7 20 37-56 41-60 (88)
255 3p5t_L Cleavage and polyadenyl 90.3 0.097 3.3E-06 30.6 1.2 18 37-54 44-61 (90)
256 3md1_A Nuclear and cytoplasmic 90.1 0.18 6E-06 28.7 2.2 19 37-55 42-60 (83)
257 2dgs_A DAZ-associated protein 90.1 0.22 7.4E-06 29.5 2.7 19 37-55 51-69 (99)
258 2dgx_A KIAA0430 protein; RRM d 90.0 0.19 6.7E-06 29.7 2.4 17 38-54 52-68 (96)
259 2dis_A Unnamed protein product 90.0 0.21 7.3E-06 30.0 2.6 20 37-56 51-70 (109)
260 2jvr_A Nucleolar protein 3; RN 90.0 0.19 6.6E-06 31.0 2.4 19 37-55 66-84 (111)
261 1whw_A Hypothetical protein ri 89.9 0.22 7.7E-06 29.4 2.7 19 37-55 49-67 (99)
262 2x1f_A MRNA 3'-END-processing 89.9 0.23 7.8E-06 29.2 2.7 19 37-55 43-61 (96)
263 2jwn_A Embryonic polyadenylate 89.9 0.24 8.1E-06 30.6 2.8 21 38-58 78-98 (124)
264 1fjc_A Nucleolin RBD2, protein 89.7 0.2 6.8E-06 29.4 2.3 20 36-55 51-70 (96)
265 2kxn_B Transformer-2 protein h 89.6 0.36 1.2E-05 30.4 3.6 18 37-54 87-104 (129)
266 2rs2_A Musashi-1, RNA-binding 89.6 0.21 7.3E-06 30.3 2.4 19 37-55 66-84 (109)
267 2dnl_A Cytoplasmic polyadenyla 89.6 0.15 5.2E-06 31.2 1.7 19 37-55 51-69 (114)
268 2dnz_A Probable RNA-binding pr 89.5 0.25 8.6E-06 28.8 2.6 18 37-54 46-63 (95)
269 2j76_E EIF-4B, EIF4B, eukaryot 89.5 0.22 7.6E-06 29.6 2.4 22 37-58 60-81 (100)
270 2cqi_A Nucleolysin TIAR; RNA r 89.5 0.25 8.6E-06 29.4 2.6 17 38-54 55-71 (103)
271 1jmt_A Splicing factor U2AF 35 89.5 0.21 7.1E-06 30.4 2.2 19 37-55 67-85 (104)
272 3s7r_A Heterogeneous nuclear r 89.4 0.18 6.3E-06 29.0 1.9 21 37-57 52-72 (87)
273 2fc8_A NCL protein; structure 89.4 0.18 6.1E-06 30.0 1.9 18 37-54 53-70 (102)
274 2cph_A RNA binding motif prote 89.4 0.26 8.8E-06 29.5 2.7 18 37-54 57-74 (107)
275 1nu4_A U1A RNA binding domain; 89.4 0.23 8E-06 29.1 2.4 19 37-55 50-68 (97)
276 1x5u_A Splicing factor 3B subu 89.4 0.24 8E-06 29.6 2.5 19 37-55 56-74 (105)
277 1x4h_A RNA-binding protein 28; 89.4 0.26 8.9E-06 29.7 2.7 18 37-54 56-73 (111)
278 2dgp_A Bruno-like 4, RNA bindi 89.3 0.27 9.1E-06 29.4 2.7 18 37-54 54-71 (106)
279 2e5h_A Zinc finger CCHC-type a 89.2 0.24 8.2E-06 28.9 2.4 19 37-55 57-75 (94)
280 2lmi_A GRSF-1, G-rich sequence 89.2 0.24 8.2E-06 29.9 2.4 48 37-93 54-101 (107)
281 2cqg_A TDP-43, TAR DNA-binding 89.2 0.23 7.7E-06 29.6 2.3 19 37-55 56-74 (103)
282 2cpf_A RNA binding motif prote 89.1 0.23 7.9E-06 29.2 2.3 20 36-55 48-67 (98)
283 2hgm_A HNRPF protein, heteroge 89.1 0.21 7.1E-06 31.6 2.1 22 37-58 83-104 (126)
284 2fc9_A NCL protein; structure 89.0 0.24 8.2E-06 29.4 2.3 19 37-55 52-70 (101)
285 1x4b_A Heterogeneous nuclear r 89.0 0.38 1.3E-05 29.3 3.3 20 37-56 68-87 (116)
286 2ek1_A RNA-binding protein 12; 89.0 0.24 8.2E-06 28.9 2.3 19 37-55 56-74 (95)
287 2dhg_A TRNA selenocysteine ass 88.9 0.24 8.1E-06 29.5 2.2 18 37-54 50-67 (104)
288 2dgv_A HnRNP M, heterogeneous 88.8 0.25 8.7E-06 28.6 2.3 18 37-54 47-64 (92)
289 1uaw_A Mouse-musashi-1; RNP-ty 88.8 0.15 5E-06 28.6 1.2 18 38-55 42-59 (77)
290 2dnh_A Bruno-like 5, RNA bindi 88.8 0.25 8.5E-06 29.5 2.3 17 38-54 56-72 (105)
291 2cpe_A RNA-binding protein EWS 88.8 0.27 9.1E-06 29.8 2.4 18 37-54 64-81 (113)
292 1x5s_A Cold-inducible RNA-bind 88.8 0.26 8.8E-06 29.3 2.3 18 37-54 53-70 (102)
293 2cqp_A RNA-binding protein 12; 88.7 0.25 8.7E-06 29.0 2.2 19 37-55 56-74 (98)
294 2e5j_A Methenyltetrahydrofolat 88.6 0.26 9E-06 29.1 2.3 19 36-54 54-72 (97)
295 1u6f_A Tcubp1, RNA-binding pro 88.6 0.44 1.5E-05 30.0 3.5 18 37-54 83-100 (139)
296 2la6_A RNA-binding protein FUS 88.6 0.23 8E-06 29.4 2.0 19 37-55 62-80 (99)
297 2nlw_A Eukaryotic translation 88.6 0.2 7E-06 30.1 1.8 19 37-55 60-78 (105)
298 1wez_A HnRNP H', FTP-3, hetero 88.6 0.17 6E-06 30.5 1.5 20 37-56 54-73 (102)
299 2div_A TRNA selenocysteine ass 88.6 0.22 7.5E-06 29.4 1.9 19 37-55 51-69 (99)
300 2cq3_A RNA-binding protein 9; 88.5 0.32 1.1E-05 28.9 2.6 18 37-54 54-71 (103)
301 2hvz_A Splicing factor, argini 88.5 0.28 9.4E-06 29.1 2.3 18 37-54 36-53 (101)
302 2cpx_A Hypothetical protein FL 88.5 0.27 9.2E-06 29.9 2.3 19 37-55 66-84 (115)
303 2dgw_A Probable RNA-binding pr 88.5 0.23 7.9E-06 28.9 1.9 21 38-58 50-70 (91)
304 2cq0_A Eukaryotic translation 88.4 0.27 9.3E-06 29.3 2.3 19 37-55 56-74 (103)
305 1x4a_A Splicing factor, argini 88.4 0.29 9.9E-06 29.5 2.4 19 37-55 60-78 (109)
306 2cqd_A RNA-binding region cont 88.4 0.33 1.1E-05 29.6 2.7 20 37-56 58-77 (116)
307 1p27_B RNA-binding protein 8A; 88.4 0.27 9.3E-06 29.4 2.2 18 38-55 65-82 (106)
308 2ywk_A Putative RNA-binding pr 88.3 0.24 8.3E-06 28.9 1.9 19 37-55 56-74 (95)
309 2dh8_A DAZ-associated protein 88.2 0.22 7.5E-06 29.8 1.7 19 37-55 57-75 (105)
310 2cqb_A Peptidyl-prolyl CIS-tra 88.1 0.22 7.7E-06 29.5 1.7 19 37-55 53-71 (102)
311 1oo0_B CG8781-PA, drosophila Y 88.1 0.35 1.2E-05 29.1 2.7 19 37-55 67-85 (110)
312 2fy1_A RNA-binding motif prote 88.1 0.29 1E-05 30.1 2.3 18 37-54 47-64 (116)
313 2dgo_A Cytotoxic granule-assoc 88.1 0.29 9.8E-06 29.8 2.3 18 38-55 57-74 (115)
314 2d9p_A Polyadenylate-binding p 88.1 0.29 1E-05 29.1 2.3 18 37-54 54-71 (103)
315 1p1t_A Cleavage stimulation fa 87.9 0.26 8.8E-06 29.3 1.9 18 38-55 50-67 (104)
316 2pe8_A Splicing factor 45; RRM 87.9 0.32 1.1E-05 29.6 2.4 18 38-55 56-73 (105)
317 2jrs_A RNA-binding protein 39; 87.7 0.31 1.1E-05 29.5 2.2 19 37-55 67-85 (108)
318 2err_A Ataxin-2-binding protei 87.7 0.25 8.6E-06 30.0 1.8 19 37-55 68-86 (109)
319 2dnm_A SRP46 splicing factor; 87.5 0.24 8.2E-06 29.5 1.6 18 37-54 54-71 (103)
320 2cq4_A RNA binding motif prote 87.5 0.31 1.1E-05 29.6 2.1 23 37-59 66-88 (114)
321 2dit_A HIV TAT specific factor 87.3 0.34 1.2E-05 29.5 2.3 19 37-55 63-81 (112)
322 3n9u_C Cleavage and polyadenyl 87.2 0.33 1.1E-05 31.7 2.2 19 37-55 98-116 (156)
323 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.0 0.42 1.4E-05 29.9 2.6 19 37-55 104-122 (140)
324 3ulh_A THO complex subunit 4; 86.9 0.38 1.3E-05 28.7 2.3 19 37-55 69-87 (107)
325 3v4m_A Splicing factor U2AF 65 86.8 0.46 1.6E-05 28.8 2.6 18 38-55 59-76 (105)
326 3lqv_A PRE-mRNA branch site pr 86.8 0.41 1.4E-05 29.0 2.4 18 38-55 47-64 (115)
327 2kt5_A RNA and export factor-b 86.7 0.46 1.6E-05 29.3 2.7 18 37-54 75-92 (124)
328 2cpz_A CUG triplet repeat RNA- 86.6 0.34 1.1E-05 29.5 1.9 18 38-55 67-84 (115)
329 2dha_A FLJ20171 protein; RRM d 86.4 0.26 8.8E-06 31.0 1.3 50 37-95 67-116 (123)
330 2do0_A HnRNP M, heterogeneous 86.3 0.42 1.4E-05 28.9 2.3 18 37-54 55-72 (114)
331 3ex7_B RNA-binding protein 8A; 86.3 0.45 1.5E-05 29.4 2.5 17 38-54 64-80 (126)
332 1x5o_A RNA binding motif, sing 86.3 0.41 1.4E-05 29.0 2.2 19 37-55 65-83 (114)
333 2xs2_A Deleted in azoospermia- 86.2 0.22 7.6E-06 29.6 0.9 20 37-56 49-68 (102)
334 2khc_A Testis-specific RNP-typ 85.7 0.39 1.3E-05 29.3 1.9 19 37-55 81-99 (118)
335 1x4c_A Splicing factor, argini 85.2 0.61 2.1E-05 28.1 2.6 17 39-55 51-67 (108)
336 3beg_B Splicing factor, argini 85.1 0.62 2.1E-05 28.5 2.6 16 39-54 52-67 (115)
337 2cqh_A IGF-II mRNA-binding pro 84.6 0.43 1.5E-05 27.8 1.6 17 38-54 44-60 (93)
338 3egn_A RNA-binding protein 40; 84.3 0.49 1.7E-05 30.0 1.9 18 37-54 91-108 (143)
339 2hzc_A Splicing factor U2AF 65 84.1 0.83 2.8E-05 26.0 2.8 22 38-59 53-74 (87)
340 2hgn_A Heterogeneous nuclear r 83.6 0.36 1.2E-05 31.0 1.1 20 37-56 85-104 (139)
341 1h2v_Z 20 kDa nuclear CAP bind 83.4 0.65 2.2E-05 29.8 2.3 18 37-54 80-97 (156)
342 2m2b_A RNA-binding protein 10; 83.4 0.43 1.5E-05 29.9 1.3 16 37-53 66-81 (131)
343 3s6e_A RNA-binding protein 39; 83.0 0.66 2.3E-05 28.7 2.1 18 38-55 55-72 (114)
344 3ue2_A Poly(U)-binding-splicin 82.7 0.76 2.6E-05 28.6 2.3 18 38-55 71-88 (118)
345 2voo_A Lupus LA protein; RNA-b 82.4 0.73 2.5E-05 31.0 2.3 20 37-56 149-168 (193)
346 2diu_A KIAA0430 protein; struc 82.3 0.88 3E-05 27.5 2.4 17 38-54 46-62 (96)
347 2lea_A Serine/arginine-rich sp 82.3 0.58 2E-05 29.6 1.7 19 37-55 88-106 (135)
348 2e5g_A U6 snRNA-specific termi 81.5 1.5 5E-05 25.5 3.2 19 40-58 47-65 (94)
349 1sjr_A Polypyrimidine tract-bi 81.2 0.91 3.1E-05 30.1 2.3 35 20-54 65-100 (164)
350 2cq2_A Hypothetical protein LO 80.6 1 3.4E-05 28.0 2.3 23 40-62 65-88 (114)
351 1rk8_A CG8781-PA, CG8781-PA pr 80.6 0.95 3.2E-05 29.4 2.3 18 37-54 113-130 (165)
352 1sjq_A Polypyrimidine tract-bi 80.4 1.1 3.9E-05 27.3 2.5 16 39-54 53-68 (105)
353 3q2s_C Cleavage and polyadenyl 79.1 0.83 2.9E-05 31.6 1.7 20 37-56 111-130 (229)
354 2cq1_A PTB-like protein L; RRM 79.1 1.4 4.6E-05 26.5 2.5 16 39-54 52-67 (101)
355 1x4d_A Matrin 3; structural ge 78.5 1.3 4.5E-05 26.8 2.3 16 39-54 53-68 (102)
356 2f3j_A RNA and export factor b 78.1 1.3 4.6E-05 29.3 2.4 19 37-55 128-146 (177)
357 1wex_A Hypothetical protein (r 78.0 1.5 5.2E-05 26.4 2.5 17 38-54 51-67 (104)
358 2dgu_A Heterogeneous nuclear r 76.5 1.6 5.5E-05 25.8 2.3 16 39-54 46-61 (103)
359 1x4f_A Matrin 3; structural ge 76.4 1.5 5.1E-05 27.1 2.1 17 38-54 62-78 (112)
360 2ad9_A Polypyrimidine tract-bi 74.2 1.8 6.2E-05 27.0 2.1 16 39-54 68-83 (119)
361 1x4g_A Nucleolysin TIAR; struc 73.9 2.3 7.7E-05 25.4 2.5 16 39-54 62-77 (109)
362 3zzy_A Polypyrimidine tract-bi 73.9 1.9 6.5E-05 27.4 2.2 34 21-54 48-82 (130)
363 3r27_A HnRNP L, heterogeneous 73.7 2.3 8E-05 25.6 2.5 17 38-54 57-73 (100)
364 3pgw_S U1-70K; protein-RNA com 72.1 3.1 0.00011 31.7 3.3 36 20-55 121-161 (437)
365 2g0c_A ATP-dependent RNA helic 60.7 7.9 0.00027 21.6 2.9 36 73-111 40-75 (76)
366 3dxb_A Thioredoxin N-terminall 58.2 5.8 0.0002 26.8 2.3 18 37-54 174-191 (222)
367 3ts2_A Protein LIN-28 homolog 57.7 1.3 4.5E-05 28.8 -1.0 28 19-46 2-29 (148)
368 3tht_A Alkylated DNA repair pr 55.5 7.1 0.00024 28.9 2.5 16 38-53 56-71 (345)
369 3u1l_A PRE-mRNA-splicing facto 50.9 9.7 0.00033 26.7 2.5 18 38-55 179-196 (240)
370 3fut_A Dimethyladenosine trans 48.4 20 0.0007 25.3 3.9 31 6-37 112-142 (271)
371 2od0_A Hypothetical protein VP 40.8 26 0.00088 20.9 3.0 26 16-41 4-29 (105)
372 3uzu_A Ribosomal RNA small sub 38.0 11 0.00038 26.8 1.1 32 6-37 116-147 (279)
373 1i4w_A Mitochondrial replicati 33.9 26 0.0009 25.9 2.6 22 6-27 144-165 (353)
374 3ftd_A Dimethyladenosine trans 33.3 31 0.001 23.9 2.8 32 6-37 97-128 (249)
375 3tqs_A Ribosomal RNA small sub 32.2 14 0.00047 25.9 0.8 31 7-37 99-129 (255)
376 4e8u_A Putative uncharacterize 31.8 1.1E+02 0.0038 20.2 5.5 42 7-48 15-72 (172)
377 1qyr_A KSGA, high level kasuga 31.6 37 0.0013 23.5 3.0 32 6-37 92-123 (252)
378 1ik9_C DNA ligase IV; DNA END 31.4 41 0.0014 16.2 2.3 17 13-29 19-35 (37)
379 1eij_A Hypothetical protein MT 28.9 41 0.0014 19.4 2.4 20 10-29 50-69 (80)
380 2e5p_A Protein PHF1, PHD finge 28.3 25 0.00087 19.5 1.3 20 29-48 28-47 (68)
381 1c9o_A CSPB, cold-shock protei 26.7 22 0.00074 19.4 0.9 17 29-45 4-20 (66)
382 2kcm_A Cold shock domain famil 26.4 22 0.00075 20.0 0.9 8 38-45 12-19 (74)
383 3cam_A Cold-shock domain famil 26.0 23 0.00077 19.5 0.9 17 29-45 4-20 (67)
384 3a0j_A Cold shock protein; OB- 24.8 24 0.00084 19.7 0.9 17 29-45 4-20 (73)
385 1g6p_A Cold shock protein TMCS 24.5 25 0.00086 19.2 0.9 8 38-45 12-19 (66)
386 3h7h_B Transcription elongatio 24.0 65 0.0022 19.4 2.8 25 71-95 49-73 (106)
387 1fme_A FSD-EY peptide; beta-BE 23.1 54 0.0019 14.4 1.6 13 16-28 13-25 (28)
388 2fh0_A Hypothetical 16.0 kDa p 22.9 52 0.0018 19.0 2.0 19 10-28 48-66 (81)
389 2k5n_A Putative cold-shock pro 22.9 36 0.0012 19.1 1.4 17 29-45 5-21 (74)
390 3i2z_B RNA chaperone, negative 22.3 29 0.001 19.2 0.9 17 29-45 8-24 (71)
391 2cs4_A Protein C12ORF2; GTP bi 21.7 77 0.0026 18.9 2.7 29 9-37 21-50 (95)
392 2eqj_A Metal-response element- 21.5 41 0.0014 18.7 1.3 18 30-47 33-50 (66)
393 1h95_A CSD, Y-box binding prot 21.2 32 0.0011 19.5 0.9 17 29-45 11-27 (79)
394 4gdk_A Ubiquitin-like protein 21.0 1.1E+02 0.0037 17.9 3.2 33 6-48 52-87 (91)
395 2m0o_A PHD finger protein 1; t 20.8 42 0.0014 19.2 1.3 19 29-47 45-63 (79)
396 1ytr_A Bacteriocin plantaricin 20.7 57 0.0019 14.0 1.4 11 19-29 15-25 (26)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=3.6e-25 Score=155.54 Aligned_cols=109 Identities=20% Similarity=0.370 Sum_probs=93.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.++|||||||+++++++|+++|++||+|.+++++ +|||||+|.+.++|+.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 5799999999999999999999999999999987 5899999999999998
Q ss_pred -------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceec
Q psy1185 54 -------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW 101 (131)
Q Consensus 54 -------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~ 101 (131)
.+| +..+.+..+ .+.++|||||+|.+.++|.+|++.|||. .++
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~--~~~ 169 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGM--LLN 169 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTC--EET
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCC--EEC
Confidence 234 333333332 3457899999999999999999999998 899
Q ss_pred CcEEEEEecCCCCCCC
Q psy1185 102 GCDIIVDWADPQEEPD 117 (131)
Q Consensus 102 g~~l~v~~a~~~~~~~ 117 (131)
|+.|.|.||.++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999765443
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=1.1e-23 Score=141.82 Aligned_cols=108 Identities=23% Similarity=0.389 Sum_probs=91.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
..++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 36899999999999999999999999999999987 4899999999999987
Q ss_pred ----------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcE
Q psy1185 54 ----------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104 (131)
Q Consensus 54 ----------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~ 104 (131)
.+| +..+.+..+. .+|.++|+|||+|.+.++|.+|+. +++. .++|+.
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~~~--~~~g~~ 157 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRVCQ-NKFI--DFKDRK 157 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS-SSSTTSEEEEEEESSHHHHHHHHH-CSEE--CSSSSC
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHh-CCCE--EeCCeE
Confidence 234 3333333332 468889999999999999999998 7776 899999
Q ss_pred EEEEecCCCC
Q psy1185 105 IIVDWADPQE 114 (131)
Q Consensus 105 l~v~~a~~~~ 114 (131)
|.|.||.|+.
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999999863
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-23 Score=140.48 Aligned_cols=105 Identities=26% Similarity=0.420 Sum_probs=90.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHh------------------------
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAIT------------------------ 53 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~------------------------ 53 (131)
++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999987 6899999999999988
Q ss_pred -----------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCc
Q psy1185 54 -----------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103 (131)
Q Consensus 54 -----------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~ 103 (131)
.+| +..+.+..++ .++.++|+|||+|.+.++|.+|+..|+|. .++|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 157 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGR 157 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCC--ccCCc
Confidence 233 2233333332 46788999999999999999999999998 89999
Q ss_pred EEEEEecCC
Q psy1185 104 DIIVDWADP 112 (131)
Q Consensus 104 ~l~v~~a~~ 112 (131)
.|.|.||++
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=132.20 Aligned_cols=81 Identities=30% Similarity=0.395 Sum_probs=75.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++|+++|+++|++||+|.++++++. ..+|.++|||||+|.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---------------------------~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD---------------------------KVAGHSLGYGFVNYVT 70 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---------------------------SSSCCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec---------------------------CCCCcccccEEEEECC
Confidence 3578999999999999999999999999999998854 3468899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|++.|+|. .++|+.|+|+||+|
T Consensus 71 ~~~A~~Ai~~lng~--~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 71 AKDAERAINTLNGL--RLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEECCB
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEEeeC
Confidence 99999999999998 89999999999986
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=6.7e-23 Score=141.09 Aligned_cols=111 Identities=24% Similarity=0.411 Sum_probs=89.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+.++|+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 6799999999999999999999999999999987 5799999999999998
Q ss_pred ----------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 54 ----------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 54 ----------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
.+| +..+.+..+. .++.++|||||+|.+.++|.+|+.. ++.
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~-~~~-- 168 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-- 168 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHC-SCC--
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-CCCCccceEEEEECCHHHHHHHHHh-CCc--
Confidence 223 2233333322 3678899999999999999999987 676
Q ss_pred eecCcEEEEEecCCCCCCCh
Q psy1185 99 KVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~~ 118 (131)
.++|+.|.|.||.++.+...
T Consensus 169 ~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 169 TVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp EETTEECEEEECC-------
T ss_pred EECCEEEEEEecCChhHhcc
Confidence 89999999999998877653
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=1.1e-22 Score=141.98 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=94.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5799999999999999999999999999999985 7999999999999998
Q ss_pred ----------------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHH
Q psy1185 54 ----------------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKR 92 (131)
Q Consensus 54 ----------------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 92 (131)
.+| +..+.+..+. .++.++|+|||+|.+.++|.+|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP-TTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC-CCCCcCceEEEEecCHHHHHHHHHH
Confidence 123 2223333322 3678899999999999999999999
Q ss_pred HhCCcceecCcEEEEEecCCCCCCC
Q psy1185 93 LATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 93 l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
|++. .++|+.|.|.||.++..+.
T Consensus 187 l~g~--~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 187 MNLF--DLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HTTC--BCSSSBCEEEECSSCSSTT
T ss_pred ccCC--EeCCcEEEEEEecCCCCCC
Confidence 9998 8999999999999876554
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=1.2e-22 Score=137.24 Aligned_cols=106 Identities=26% Similarity=0.472 Sum_probs=89.7
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe----------cCeEEEEECCHHHHHh------------------
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----------KDYAFVHFEDRQEAIT------------------ 53 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~----------~~~~fv~~~~~~~a~~------------------ 53 (131)
|..++|||+|||+++++++|+++|++||+|.+++++ +|||||+|.+.++|+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 567999999999999999999999999999999886 4799999999999988
Q ss_pred -------------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 54 -------------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 54 -------------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
.+| +..+.+..+ ..|.++|+|||+|.+.++|.+|+..|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG--PDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC--TTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC--CCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 234 333334333 3578899999999999999999999999
Q ss_pred Ccceec---CcEEEEEecC
Q psy1185 96 GRLKVW---GCDIIVDWAD 111 (131)
Q Consensus 96 ~~~~~~---g~~l~v~~a~ 111 (131)
. .+. ++.|.|.||+
T Consensus 159 ~--~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 A--QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp S--CCCTTCSSCCEEEECC
T ss_pred C--cccCCCCCCeEEEecC
Confidence 7 344 4899999985
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=129.95 Aligned_cols=87 Identities=20% Similarity=0.454 Sum_probs=77.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+++|||+|||+++|+++|+++|++|| .|.++++++. ..+|.++|||||+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d---------------------------~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN---------------------------KSSGQSRGFAFVEFSH 53 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC---------------------------SSSCCCSSEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec---------------------------CCCCCcCceEEEEecC
Confidence 47899999999999999999999999 7999988854 3478899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
.++|.+|++.+++. ..++|+.|.|+||.+++....
T Consensus 54 ~~~A~~Ai~~~~~~-~~~~gr~i~V~~a~~~~~~~~ 88 (91)
T 2lxi_A 54 LQDATRWMEANQHS-LNILGQKVSMHYSDPKPKINE 88 (91)
T ss_dssp HHHHHHHHHTTTTE-EEETTEEEEEECCCSCCCCSC
T ss_pred HHHHHHHHHhcCCC-eEECCEEEEEEEcCCCCCCCC
Confidence 99999999988653 479999999999998877654
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=1.5e-22 Score=136.12 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=88.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
..++|||+|||.++++++|+++|++||+|.++.++ +|||||+|.+.++|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999887 4799999999999998
Q ss_pred ------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecC
Q psy1185 54 ------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWG 102 (131)
Q Consensus 54 ------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g 102 (131)
.+| +..+.+..+ ..++.++|+|||+|.+.++|.+|++.|+|. .++|
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g 158 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISALNNV--IPEG 158 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCTT
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHhcCC--EecC
Confidence 123 222222222 236778999999999999999999999998 6766
Q ss_pred --cEEEEEec
Q psy1185 103 --CDIIVDWA 110 (131)
Q Consensus 103 --~~l~v~~a 110 (131)
+.|+|+||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.89 E-value=3.3e-22 Score=134.04 Aligned_cols=104 Identities=29% Similarity=0.388 Sum_probs=88.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh----------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~---------------------- 53 (131)
.++|||+|||+++++++|+++|++||.|.++.++ +|||||+|.+.++|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999987 3899999999999998
Q ss_pred -----------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCc
Q psy1185 54 -----------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103 (131)
Q Consensus 54 -----------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~ 103 (131)
.+| +..+.+..+. .+|.++|+|||+|.+.++|.+|++.|+|. .++|+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 158 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ-VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGA 158 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCTTC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhcCC--ccCCC
Confidence 233 2233333322 36778999999999999999999999998 78886
Q ss_pred E--EEEEec
Q psy1185 104 D--IIVDWA 110 (131)
Q Consensus 104 ~--l~v~~a 110 (131)
. |.|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 4 899986
No 11
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=1.1e-22 Score=130.46 Aligned_cols=85 Identities=16% Similarity=0.384 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.++++++. .+.++|||||+|.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-----------------------------~~~~kg~afV~f~~~ 55 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-----------------------------ENGSKGYGFVHFETQ 55 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-----------------------------TTEEEEEEEEEESCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-----------------------------CCCCCceEEEEECCH
Confidence 578999999999999999999999999999998853 355789999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCChH
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTE 119 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~~ 119 (131)
++|.+|++.|++. .++|+.|.|.|+.++.++...
T Consensus 56 ~~A~~Ai~~l~~~--~~~g~~i~V~~a~~~~~~~~~ 89 (115)
T 4f25_A 56 EAAERAIEKMNGM--LLNDRKVFVGRFKSRKEREAE 89 (115)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEEESSCCCC----
T ss_pred HHHHHHHHHcCCC--EECCEEEEEEECCCccccccc
Confidence 9999999999998 899999999999987765544
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=8.1e-23 Score=127.31 Aligned_cols=83 Identities=29% Similarity=0.455 Sum_probs=74.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
.+.||||+|||+++|+++|+++|++||. +.+++++++ ..+|.++|||||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d---------------------------~~tg~srG~aFV~f 60 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD---------------------------KQTQQNRGFAFVQL 60 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC---------------------------SSSSSCSSEEEEEC
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec---------------------------CCCCCCceEeEEEE
Confidence 4779999999999999999999999995 678888764 44789999999999
Q ss_pred CCHHhHHHHHHHHhCCc--ceecCcEEEEEecCC
Q psy1185 81 DSHKSASLAKKRLATGR--LKVWGCDIIVDWADP 112 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~--~~~~g~~l~v~~a~~ 112 (131)
.+.++|.+|++.|++.+ +.++|+.|.|+||++
T Consensus 61 ~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 61 SSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 99999999999999963 468999999999985
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.88 E-value=2.3e-22 Score=136.37 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=88.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeE-----EEEe--cCeEEEEECCHHHHHh----------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER-----VKRI--KDYAFVHFEDRQEAIT---------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-----~~i~--~~~~fv~~~~~~~a~~---------------------- 53 (131)
..++|||+|||.++++++|+++|++||.+.. ...- +|||||+|.+.++|..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence 4789999999999999999999999986544 2211 7999999999999998
Q ss_pred ---------------------------hcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEE
Q psy1185 54 ---------------------------VTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106 (131)
Q Consensus 54 ---------------------------~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~ 106 (131)
.+.-.+.+... ..++.++|+|||+|.+.++|.+|+..|+|. .++|+.|.
T Consensus 92 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~ 167 (175)
T 1fje_B 92 DSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVS 167 (175)
T ss_dssp SCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEE--EETTEEEE
T ss_pred cccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 12222222222 456788999999999999999999999998 89999999
Q ss_pred EEecCCCC
Q psy1185 107 VDWADPQE 114 (131)
Q Consensus 107 v~~a~~~~ 114 (131)
|+||.+++
T Consensus 168 v~~a~~k~ 175 (175)
T 1fje_B 168 LYYTGEKG 175 (175)
T ss_dssp EEECSSCC
T ss_pred EEecCCCC
Confidence 99998764
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=8.3e-22 Score=119.98 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|.++.++++ ..++.++|||||+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~ 56 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD---------------------------MATGKSKGYGFVSFF 56 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------TTTCCEEEEEEEEES
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec---------------------------CCCCccceEEEEEEC
Confidence 35689999999999999999999999999999998854 346788999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+.++|.+|++.|++. .++|+.|.|+||++++
T Consensus 57 ~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 57 NKWDAENAIQQMGGQ--WLGGRQIRTNWATRKP 87 (87)
T ss_dssp SHHHHHHHHHHHTTC--EETTEECEEEEEC---
T ss_pred CHHHHHHHHHHcCCC--EECCeEEEEEecCCCC
Confidence 999999999999998 8999999999998753
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=1.2e-21 Score=118.27 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=75.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
..+|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---------------------------~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD---------------------------MQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC---------------------------TTTCCEEEEEEEEESCH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc---------------------------CCCCCccceEEEEECCH
Confidence 368999999999999999999999999999998854 34688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
++|.+|+..|+|. .++|+.|.|+||.+++
T Consensus 54 ~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 54 DDAQNAMDSMQGQ--DLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEEECCCCC
T ss_pred HHHHHHHHHhcCC--eeCCcEEEEEecCcCC
Confidence 9999999999998 8999999999999865
No 16
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.88 E-value=9.8e-22 Score=123.25 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=73.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.+++|||+|||+++|+++|+++|++||.|.++.+++ .+|+|||+|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---------------------------------~kg~AFVef~~ 66 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---------------------------------KKRQALVEFED 66 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---------------------------------TTTEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---------------------------------CCCEEEEEECC
Confidence 367999999999999999999999999999998874 37999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|++.+++.++.+.|+.|.|+||+++.
T Consensus 67 ~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 67 VLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 99999999999998777999999999998764
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=1.8e-21 Score=131.40 Aligned_cols=107 Identities=24% Similarity=0.336 Sum_probs=90.4
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEe--cCeEEEEECCHHHHHh---------------
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRI--KDYAFVHFEDRQEAIT--------------- 53 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~v~~~~i~--~~~~fv~~~~~~~a~~--------------- 53 (131)
...++|||+|||.++++++|+++|++| | .|.++.+. +|||||+|.+.++|+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 357899999999999999999999999 7 78888776 8999999999999998
Q ss_pred -----------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCc
Q psy1185 54 -----------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGR 97 (131)
Q Consensus 54 -----------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 97 (131)
.+| +..+.+..++ .+|.++|+|||+|.+.++|.+|+..|+|.
T Consensus 82 v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~- 159 (172)
T 2g4b_A 82 IRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQAIAGLNGM- 159 (172)
T ss_dssp EECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TTCSEEEEEEEEESSTTHHHHHHHHHTTC-
T ss_pred ecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHcCCC-
Confidence 223 2223332322 36788999999999999999999999998
Q ss_pred ceecCcEEEEEecC
Q psy1185 98 LKVWGCDIIVDWAD 111 (131)
Q Consensus 98 ~~~~g~~l~v~~a~ 111 (131)
.++|+.|.|+||.
T Consensus 160 -~~~g~~l~V~~As 172 (172)
T 2g4b_A 160 -QLGDKKLLVQRAS 172 (172)
T ss_dssp -EETTEECEEEECC
T ss_pred -EECCeEEEEEeCC
Confidence 8999999999983
No 18
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.3e-22 Score=125.97 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=74.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------------------------------kGfaFVeF~~ 61 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------------------------------KNQAFIEMNT 61 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------------------------------TTEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------------------------------CCEEEEEECC
Confidence 4689999999999999999999999999999998842 7999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
.++|.+|++.+++.+..++|+.|.|.||+++.....
T Consensus 62 ~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 62 EEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 97 (105)
T ss_dssp HHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCT
T ss_pred HHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCcc
Confidence 999999999998644489999999999998776553
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=2.5e-21 Score=133.38 Aligned_cols=113 Identities=23% Similarity=0.307 Sum_probs=90.9
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEe--cCeEEEEECCHHHHHhhc------------
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRI--KDYAFVHFEDRQEAITVT------------ 55 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~v~~~~i~--~~~~fv~~~~~~~a~~~~------------ 55 (131)
|...++|||+|||.++++++|+++|++| | .|.++.+. +|||||+|.+.++|+.+.
T Consensus 1 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 1 GAMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred CCceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 3467899999999999999999999999 6 67777766 899999999999999821
Q ss_pred ----------------------------------------------------------C-CceeEEecCCCCCCCCcceE
Q psy1185 56 ----------------------------------------------------------G-LSQVIIYSSPDDNKKNRGFC 76 (131)
Q Consensus 56 ----------------------------------------------------------g-~~~~~~~~~~~~~~~~~~~~ 76 (131)
| +..+.+..+ ..++.++|||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~a 159 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYA 159 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC-TTTCSEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec-CCCCCcceEE
Confidence 1 111111111 1367779999
Q ss_pred EEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 77 FLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 77 fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
||+|.+.++|.+|+..|+|. .++|+.|.|.||.++...
T Consensus 160 fV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 160 FCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEESSSSHHHHHHHHHTTC--EETTEECEEEESCCCCCC
T ss_pred EEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCCCC
Confidence 99999999999999999998 899999999999987653
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=119.55 Aligned_cols=87 Identities=24% Similarity=0.411 Sum_probs=79.1
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|.++.+++. ..++.+++||||+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---------------------------~~~~~~~g~afV~f~ 55 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD---------------------------SDTGRSKGYGFITFS 55 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC---------------------------SSSCCCCSEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec---------------------------CCCCceeeEEEEEEC
Confidence 35789999999999999999999999999999998854 346788999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..|++. .++|+.|+|+|+.++..+.
T Consensus 56 ~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 56 DSECARRALEQLNGF--ELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp CHHHHHHHHHHHTTC--CSSSSCCEEEESSCCCCCC
T ss_pred CHHHHHHHHHHhCCC--eeCCcEEEEEEcccccCCC
Confidence 999999999999998 8899999999999887654
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-21 Score=120.25 Aligned_cols=86 Identities=26% Similarity=0.310 Sum_probs=78.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.+++||||+|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID---------------------------SLTKKPKGFAFVTFMF 59 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC---------------------------TTTCCCCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec---------------------------CCCCCcCeEEEEEECC
Confidence 4689999999999999999999999999999988753 3368889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++.+..
T Consensus 60 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 60 PEHAVKAYAEVDGQ--VFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp HHHHHHHHHHTTTE--ESSSCEEEEEECCCCSTTC
T ss_pred HHHHHHHHHHhCCC--EECCcEEEEEEcCCCcccc
Confidence 99999999999997 8899999999999887653
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=123.79 Aligned_cols=83 Identities=23% Similarity=0.266 Sum_probs=76.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d---------------------------~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH---------------------------PRTRKHLGLARVLFTS 57 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC---------------------------TTTCCEEEEEEEEESS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC---------------------------CCCCceeeEEEEEECC
Confidence 3579999999999999999999999999999998854 3468899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|++.|||. .++|+.|.|.+|....
T Consensus 58 ~~~A~~Ai~~lng~--~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 58 TRGAKETVKNLHLT--SVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEECSTTH
T ss_pred HHHHHHHHHHhCCC--EECCeEEEEEECCCCc
Confidence 99999999999998 8999999999997543
No 23
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.4e-22 Score=125.72 Aligned_cols=96 Identities=33% Similarity=0.652 Sum_probs=82.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEe-cCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI-KDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~~~i~-~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
..++|||+|||.++++++|+++|++||. |.++.++ +. ..++.++|||||+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~---------------------------~~~g~~~g~afV~f 59 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA---------------------------ADKMKNRGFAFVEY 59 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS---------------------------CTTTTTCCEEEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC---------------------------CCCCCcCcEEEEEe
Confidence 3679999999999999999999999998 9999877 32 34678899999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCChHHHHhHh
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKVL 125 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 125 (131)
.+.++|.+|+..|++....++|+.|.|.||.++.+++.+.+++++
T Consensus 60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~~~~~~~~~k 104 (109)
T 2dis_A 60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVS 104 (109)
T ss_dssp SSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCSTTTCCSSCCS
T ss_pred cCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCcCHHHHHhcc
Confidence 999999999999962113899999999999999988877776654
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=3.6e-21 Score=119.47 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=78.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.+++++++ ..+|.++|||||+|.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD---------------------------PQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---------------------------TTTCCBCSEEEEEESSH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------------CCCCccceEEEEEECCH
Confidence 579999999999999999999999999999998854 34678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
++|.+|+..|+|. .++|+.|.|.||.++.....
T Consensus 55 ~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~~ 87 (96)
T 2x1f_A 55 ESSASAVRNLNGY--QLGSRFLKCGYSSNSDISGV 87 (96)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEEECSCSSGGGH
T ss_pred HHHHHHHHHhCCC--eECCeEEEEEEcCCCCCCCc
Confidence 9999999999998 89999999999998776543
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=120.61 Aligned_cols=87 Identities=20% Similarity=0.375 Sum_probs=78.7
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-KRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~-~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
+..++|||+|||.++++++|+++|++||.|.++ ++++. ..++.+++||||+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~---------------------------~~~g~~~g~afV~f 55 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD---------------------------PDTGNSKGYAFINF 55 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC---------------------------TTTCSCCSEEEEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc---------------------------CCCCCcCeEEEEEE
Confidence 457899999999999999999999999999998 88753 34788899999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.+.++|.+|+..|++. .++|+.|.|.|+.++..+.
T Consensus 56 ~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 56 ASFDASDAAIEAMNGQ--YLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp SSHHHHHHHHHTTTTC--EETTEECEEEESCCCCCCC
T ss_pred CCHHHHHHHHHHcCCC--EECCEEEEEEEecccCCCC
Confidence 9999999999999998 8999999999999877654
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=122.38 Aligned_cols=85 Identities=26% Similarity=0.472 Sum_probs=77.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++++ ..++.++|||||+|.+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 74 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD---------------------------RRTGYLKGYTLVEYET 74 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------TTTSSEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec---------------------------CCCCceeeEEEEEECC
Confidence 3578999999999999999999999999999998854 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..|+|. .++|+.|.|+||.++.++
T Consensus 75 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 106 (106)
T 1p27_B 75 YKEAQAAMEGLNGQ--DLMGQPISVDWCFVRGPP 106 (106)
T ss_dssp HHHHHHHHHHHTTC--BSSSSBCEEEESEESSCC
T ss_pred HHHHHHHHHHhcCC--EECCcEEEEEeecCCCCC
Confidence 99999999999998 889999999999887653
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.8e-21 Score=117.17 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=73.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 58 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---------------------------YETEKHRGFAFVEFEL 58 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE---------------------------TTTTEECSEEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC---------------------------CCCCccccEEEEEECC
Confidence 5689999999999999999999999999999988743 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++|.+|++.|+|. .++|+.|+|+||+
T Consensus 59 ~~~a~~A~~~l~g~--~~~g~~l~v~~ak 85 (85)
T 3mdf_A 59 AEDAAAAIDNMNES--ELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred HHHHHHHHHHhCCC--EECCcEEEEEEcC
Confidence 99999999999998 8999999999985
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=121.48 Aligned_cols=86 Identities=23% Similarity=0.411 Sum_probs=78.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 66 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD---------------------------KTTGQSKGFAFISFHR 66 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC---------------------------SSSCSEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec---------------------------CCCCceeeEEEEEECC
Confidence 4689999999999999999999999999999998854 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 67 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 67 REDAARAIAGVSGF--GYDHLILNVEWAKPSTNSG 99 (103)
T ss_dssp HHHHHHHHHHTTTC--EETTEECEEEESSCCCCSC
T ss_pred HHHHHHHHHHcCCC--eeCCcEEEEEECCCCCCCC
Confidence 99999999999998 8999999999999887654
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=4.1e-22 Score=122.52 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=69.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.+|||+|||.++++++|+++|++|| .|.++++++. ..+|.++|||||+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~---------------------------~~~g~~kG~afV~f~~ 54 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---------------------------RANGQSKGFALVGVGS 54 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC---------------------------TTTCCEEEEEEECC-C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec---------------------------CCCCccCcEEEEEECC
Confidence 5899999999999999999999999 9999998854 3478899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|+|. .++|+.|+|.++.++.++.
T Consensus 55 ~~~a~~Ai~~l~g~--~~~gr~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 55 EASSKKLMDLLPKR--ELHGQNPVVTPSNKLEHHH 87 (90)
T ss_dssp HHHHHHHHHHGGGS--CSSSCCCEECCC-------
T ss_pred HHHHHHHHHHcCCC--eeCCEEEEEEECCCCcccc
Confidence 99999999999998 8999999999999876654
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=119.46 Aligned_cols=85 Identities=26% Similarity=0.542 Sum_probs=77.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD---------------------------AEKQRPRGFGFITFED 61 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC---------------------------TTTCSCCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---------------------------CCCCCCCceEEEEECC
Confidence 4689999999999999999999999999999998853 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++ +++. .++|+.|.|.|+.++....
T Consensus 62 ~~~a~~A~~-~~~~--~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 62 EQSVDQAVN-MHFH--DIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp HHHHHHHHH-HCCC--BSSSCBCEEEECCCCCCCC
T ss_pred HHHHHHHHH-hCCC--EECCeEEEEEECCCCcccC
Confidence 999999998 9998 8899999999999877654
No 31
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=8.9e-21 Score=137.69 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=95.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHh---------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT--------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~--------------------- 53 (131)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35789999999999999999999999999999887 5799999999999988
Q ss_pred ----------------------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcc
Q psy1185 54 ----------------------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRL 98 (131)
Q Consensus 54 ----------------------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 98 (131)
.+| +..+.+..++ +|.++|+|||+|.+.++|.+|+..|+|.
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-- 249 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL-- 249 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC--
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC--
Confidence 123 3334433333 5778999999999999999999999998
Q ss_pred eecCcEEEEEecCCCCCCC
Q psy1185 99 KVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 99 ~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|+.|.|.|+.++.++.
T Consensus 250 ~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 250 SLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp EETTEECEEEECCSSSCHH
T ss_pred ccCCeEEEEEEecCCCccc
Confidence 8899999999999887654
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=119.93 Aligned_cols=85 Identities=28% Similarity=0.532 Sum_probs=76.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. .+.+++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------------~~~~~g~afV~f~~ 64 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-----------------------------HTSNDPYCFVEFYE 64 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-----------------------------CCSSCCEEEEEESS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-----------------------------CCCCCCEEEEEECC
Confidence 3689999999999999999999999999999998853 34468999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
.++|.+|+..|++. .++|+.|.|.|+.++.....
T Consensus 65 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 65 HRDAAAALAAMNGR--KILGKEVKVNWATTPSSQKS 98 (103)
T ss_dssp HHHHHHHHHHHTTE--EETTEEEEEEECCCTTCCCC
T ss_pred HHHHHHHHHHhCCC--CcCCCeEEEEECCCCccccc
Confidence 99999999999998 89999999999998776543
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=7.4e-21 Score=121.58 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=78.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+++++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD---------------------------MATGKSKGYGFVSFFN 66 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------TTTCCEEEEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---------------------------CCCCCcceEEEEEECC
Confidence 4689999999999999999999999999999998854 2367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .++|+.|.|.|+.++....
T Consensus 67 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 67 KWDAENAIQQMGGQ--WLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHHHHHHHHHTTTC--EETTEECEEEESSCCCCCS
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEEccCCCCCC
Confidence 99999999999998 8999999999999877654
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=117.25 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=74.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCC-CcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKK-NRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~-~~~~~fv~f~ 81 (131)
+.++|||+|||.++++++|+++|++||.|.++.++.. ..++. ++|+|||+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---------------------------~~~~~~~~g~afV~f~ 55 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE---------------------------RMHPHLSKGYAYVEFE 55 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE---------------------------TTEEEEECSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC---------------------------CCCCCCCCcEEEEEEe
Confidence 4689999999999999999999999999999988743 11223 7899999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+.++|.+|+..|+|. .++|+.|.|+++.++.+
T Consensus 56 ~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 56 NPDEAEKALKHMDGG--QIDGQEITATAVLAPWP 87 (88)
T ss_dssp SHHHHHHHHHHHTTC--EETTEECEEEEECCCCC
T ss_pred cHHHHHHHHHHcCCC--eECCeEEEEEECCCCCC
Confidence 999999999999998 89999999999988765
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=5.6e-21 Score=121.24 Aligned_cols=85 Identities=26% Similarity=0.501 Sum_probs=77.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..+|.++|||||+|.+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---------------------------RRTGFSKGYALVEYET 77 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC---------------------------TTTSSBCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---------------------------CCCCCcceEEEEEECC
Confidence 3678999999999999999999999999999988753 3468889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..|+|. .++|+.|.|.|+.++.++
T Consensus 78 ~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 78 HKQALAAKEALNGA--EIMGQTIQVDWCFVKGPK 109 (110)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEESEESSCC
T ss_pred HHHHHHHHHHcCCC--EECCcEEEEEEcccCCCC
Confidence 99999999999998 899999999999887654
No 36
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.4e-21 Score=118.20 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=75.4
Q ss_pred CCceEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
+..++|||+|||+++++++|+ ++|++||.|.++++++. ... ++|||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~-----------------------------~~~-rg~af 56 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH-----------------------------TDY-QLKAV 56 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC-----------------------------CST-TCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC-----------------------------CCC-CeEEE
Confidence 457899999999999999999 99999999999998853 122 89999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
|+|.+.++|.+|++.|+|. .++|+.|+|+||+++..+.
T Consensus 57 V~f~~~~~A~~Ai~~l~g~--~~~gr~l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 57 VQMENLQDAIGAVNSLHRY--KIGSKKILVSLATGASGPS 94 (96)
T ss_dssp EEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCSSCCC
T ss_pred EEECCHHHHHHHHHHhCCC--EECCeEEEEEEcCCCCCCC
Confidence 9999999999999999998 8999999999999877654
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=120.89 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=77.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+++. ..++.+++||||+|.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE---------------------------PHTKAPRGFAFVRFHD 64 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC---------------------------SSSCSBCSCEEEEESS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------------CCCCCCCeEEEEEECC
Confidence 4689999999999999999999999999999988754 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.||++.....
T Consensus 65 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 65 RRDAQDAEAAMDGA--ELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp SSHHHHHHHHHSSC--CBTTBCCEEEECSSCCSCC
T ss_pred HHHHHHHHHHcCCC--EECCcEEEEEECCcCCCCC
Confidence 99999999999998 8999999999999776544
No 38
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=123.65 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=73.4
Q ss_pred CceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||+ ++++++|+++|++||.|.++.++++ ++||||+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---------------------------------kg~aFVef~ 60 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---------------------------------INEAFIEMA 60 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---------------------------------SSCEEEEES
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---------------------------------CCEEEEEEC
Confidence 367999999999 9999999999999999999998743 689999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|++.|++.+..+.|+.|.|.||+.+....
T Consensus 61 ~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 96 (102)
T 1x4d_A 61 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 96 (102)
T ss_dssp SHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTSS
T ss_pred CHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCCC
Confidence 999999999999986557999999999999765543
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=120.28 Aligned_cols=86 Identities=27% Similarity=0.435 Sum_probs=77.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+++. ..++.+++||||+|.+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD---------------------------RETQRSRGFGFVTFEN 63 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC---------------------------SSSCSCCSEEEEECSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC---------------------------CCCCCcccEEEEEECC
Confidence 4689999999999999999999999999999998853 3467789999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .++|+.|+|.|+.++....
T Consensus 64 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 64 IDDAKDAMMAMNGK--SVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp HHHHHHHHHHHTTC--CTTSCCCEEEEEECCCCCC
T ss_pred HHHHHHHHHHhCCC--EECCeEEEEEECCCCCCCC
Confidence 99999999999998 8899999999998877644
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=119.04 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=76.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.+++++.. .++.+++||||+|.+.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------------~~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN----------------------------RAGKPKGLAYVEYENE 68 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC----------------------------TTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC----------------------------CCCCEEeEEEEEECCH
Confidence 678999999999999999999999999999998854 2678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|+..|++. .++|+.|.|.|+.++...
T Consensus 69 ~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 69 SQASQAVMKMDGM--TIKENIIKVAISNSGPSS 99 (100)
T ss_dssp HHHHHHHHHHTTE--ESSSCEEEEEECCCCSCC
T ss_pred HHHHHHHHHhCCC--EECCEEEEEEECCCCCCC
Confidence 9999999999997 899999999999987754
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=120.08 Aligned_cols=85 Identities=28% Similarity=0.342 Sum_probs=77.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 66 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD---------------------------RVTGQHQGYGFVEFLS 66 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC---------------------------SSSCSBCSCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCcCCcEEEEEECC
Confidence 4679999999999999999999999999999998754 3367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..|++. .++|+.|.|.||.++...
T Consensus 67 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 67 EEDADYAIKIMDMI--KLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp HHHHHHHHHHSSSC--BCSSCBCEEEETTTTSCC
T ss_pred HHHHHHHHHHhCCC--eECCeEEEEEECCCCCcC
Confidence 99999999999998 899999999999987654
No 42
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=1.5e-20 Score=136.52 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=93.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh---------------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT--------------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~--------------------------- 53 (131)
..++|||+|||.++++++|+++|++|| |.++.+. +|||||+|.+.++|..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~ 99 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLC 99 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEE
Confidence 468999999999999999999999999 9999886 7999999999999988
Q ss_pred ------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 54 ------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 54 ------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.+| +..+.+..+ ..+|.++|+|||+|.+.++|.+|+..++|. .++|+.|.|.|+.++.
T Consensus 100 v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVRPFGSLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCGGG
T ss_pred EcCCCCcCCHHHHHHHHHhcCCeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCC
Confidence 234 223333322 346888999999999999999999999998 8999999999998765
Q ss_pred C
Q psy1185 115 E 115 (131)
Q Consensus 115 ~ 115 (131)
.
T Consensus 177 ~ 177 (284)
T 3smz_A 177 L 177 (284)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=5.1e-21 Score=122.41 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=77.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++++++. ..++.+++||||+|.+.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID---------------------------KQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC---------------------------SSSCSEEEEEEEECSSH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---------------------------CCCCCcCccEEEEECCH
Confidence 579999999999999999999999999999998854 33678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|++.|++. .++|+.|+|+|++++....
T Consensus 78 ~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 78 VSAQAAIQSMNGF--QIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEECCCCSCCCC
T ss_pred HHHHHHHHHcCCC--EECCEEEEEEEcCCCCcCC
Confidence 9999999999998 8999999999999877654
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=120.60 Aligned_cols=86 Identities=27% Similarity=0.501 Sum_probs=77.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.+++||||+|.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---------------------------YETEKHRGFAFVEFEL 63 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC---------------------------SSSCCCSSEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec---------------------------CCCCCcceEEEEEECC
Confidence 4679999999999999999999999999999988753 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 64 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 64 AEDAAAAIDNMNES--ELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HHHHHHHHHHHTTE--EETTEEEEEEECCCCCCCC
T ss_pred HHHHHHHHHHhCCC--EECCcEEEEEeCCCCCCCC
Confidence 99999999999997 8999999999999877654
No 45
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.85 E-value=5.2e-21 Score=138.03 Aligned_cols=109 Identities=26% Similarity=0.379 Sum_probs=92.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--cCeEEEEECCHHHHHh---------------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAIT--------------------------- 53 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~fv~~~~~~~a~~--------------------------- 53 (131)
..++|||+|||.++|+++|+++|++||.|.++.+. +|||||+|.+.++|..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~ 100 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT 100 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCccc
Confidence 46799999999999999999999999999999988 8999999999999998
Q ss_pred ------------------hcC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceec---CcEEEEEecC
Q psy1185 54 ------------------VTG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVW---GCDIIVDWAD 111 (131)
Q Consensus 54 ------------------~~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~---g~~l~v~~a~ 111 (131)
.+| +..+.+..+ .+|.++|+|||+|.+.++|.+|+..++++. .+. ++.|.|.++.
T Consensus 101 v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGA-FLLTTTPRPVIVEPME 177 (261)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSC-EESSSSCCBCEEEECC
T ss_pred ccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe-EEecCCCceEEEeecc
Confidence 344 334444444 378889999999999999999999996542 333 8899999998
Q ss_pred CCC
Q psy1185 112 PQE 114 (131)
Q Consensus 112 ~~~ 114 (131)
+..
T Consensus 178 ~~~ 180 (261)
T 3sde_A 178 QFD 180 (261)
T ss_dssp CEE
T ss_pred ccC
Confidence 654
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=117.78 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=76.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. .+.+++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-----------------------------~~~~~g~afV~f~~ 64 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-----------------------------ERGSKGFGFVTFEN 64 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-----------------------------TTTTCCEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-----------------------------CCCCcEEEEEEECC
Confidence 4689999999999999999999999999999998853 33479999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 65 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 65 SADADRAREKLHGT--VVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEECCSSCCCC
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEEcccCCCCC
Confidence 99999999999998 8999999999999877654
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.1e-21 Score=120.54 Aligned_cols=86 Identities=24% Similarity=0.394 Sum_probs=77.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|..+++++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 66 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH---------------------------PDTEHSKGCAFAQFMT 66 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---------------------------SSSCCBCSEEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCCCccEEEEEECC
Confidence 3679999999999999999999999999999998854 3467889999999999
Q ss_pred HHhHHHHHHHHh------CCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLA------TGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~------~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..++ +. .++|+.|.|.|+.++.+..
T Consensus 67 ~~~A~~A~~~~~~~~~~~~~--~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 67 QEAAQKCLAAASLEAEGGGL--KLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp HHHHHHHHHHHCTTTTTCCE--ESSSCEEEEECCCCCCCCC
T ss_pred HHHHHHHHHHhccccccCCc--EEcCEEEEEEECCCCccCC
Confidence 999999999999 76 8999999999999887654
No 48
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=5.6e-21 Score=117.49 Aligned_cols=85 Identities=26% Similarity=0.296 Sum_probs=77.5
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|..+.+++. ++.+++||||+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----------------------------~g~~~g~afV~f~ 56 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-----------------------------NGKSKGCGVVKFE 56 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-----------------------------SSCEEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-----------------------------CCCcceEEEEEEC
Confidence 35689999999999999999999999999999988742 6778999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..|++. .++|+.|.|+|+++...+.
T Consensus 57 ~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 57 SPEVAERACRMMNGM--KLSGREIDVRIDRNASGPS 90 (92)
T ss_dssp SHHHHHHHHHHHTTC--CBTTBCCCCEECSCCSSCC
T ss_pred CHHHHHHHHHHhCCC--EECCcEEEEEEcCCCCCCC
Confidence 999999999999998 8999999999999877653
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=121.55 Aligned_cols=83 Identities=24% Similarity=0.422 Sum_probs=76.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~F~~ 77 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD---------------------------SETGRSKGYGFITFSD 77 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE---------------------------TTTTEEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---------------------------CCCCccceEEEEEECC
Confidence 4689999999999999999999999999999998853 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|++.++|. .++|+.|+|+|++++.
T Consensus 78 ~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 78 SECAKKALEQLNGF--ELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHHHHHHHHHHTTC--CSSSSCCEEECSCSSC
T ss_pred HHHHHHHHHHcCCC--EECCEEEEEEEcccCC
Confidence 99999999999998 8999999999999875
No 50
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=9.8e-21 Score=115.64 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=74.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD---------------------------KFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES---------------------------CSSSSCCEEEEEEESST
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec---------------------------CCCCCcceEEEEEECCH
Confidence 579999999999999999999999999999998854 34688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
++|.+|+ .+++. .++|+.|.|.|++++.+
T Consensus 59 ~~a~~a~-~~~g~--~~~g~~l~V~~a~~~~p 87 (89)
T 3ucg_A 59 ESVRTSL-ALDES--LFRGRQIKVIPKRTNRP 87 (89)
T ss_dssp HHHHHHG-GGTTC--EETTEECEEEETTTTSC
T ss_pred HHHHHHH-hcCCC--EECCcEEEEEEccCCCC
Confidence 9999999 99998 89999999999987653
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=119.17 Aligned_cols=90 Identities=28% Similarity=0.355 Sum_probs=77.3
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|..+.+++.. ....++.+++||||+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------------~~~gt~~~~g~afV~f~ 58 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK------------------------NKAGVLLSMGFGFVEYK 58 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE------------------------CTTCCEEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC------------------------CCCCCcCcccEEEEEEC
Confidence 356899999999999999999999999999999888430 00013378899999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..|++. .++|+.|.|+|+.++..+.
T Consensus 59 ~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 59 KPEQAQKALKQLQGH--TVDGHKLEVRISERATKPA 92 (98)
T ss_dssp SHHHHHHHHHHSTTC--EETTEECEEECSSCSSCCC
T ss_pred CHHHHHHHHHHhCCC--eeCCeEEEEEEccCCCCCC
Confidence 999999999999998 8999999999999877654
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=119.69 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=77.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++.+++. ++.+++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------------~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-----------------------------GGRSKGFGFVCFSS 64 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-----------------------------SSSEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------------CCCcCEEEEEEECC
Confidence 4789999999999999999999999999999988742 67889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++.++.
T Consensus 65 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 65 PEEATKAVTEMNGR--IVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp HHHHHHHHHHHTTC--BSSSSBCEEEECSSCCCCC
T ss_pred HHHHHHHHHHhCCC--EeCCcEEEEEEecccccCC
Confidence 99999999999998 8899999999999887764
No 53
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=119.20 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------------------------------kg~aFVef~~~ 61 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------------------------------KNQAFLELATE 61 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------------------------------TTEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------------------------------CCEEEEEECCH
Confidence 579999999999999999999999999999988742 89999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|++.+++.+..+.|+.|.|.||+++....
T Consensus 62 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 62 EAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp HHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 9999999998754458999999999999876554
No 54
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.85 E-value=1.6e-20 Score=136.77 Aligned_cols=109 Identities=18% Similarity=0.304 Sum_probs=87.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe------cCeEEEEECCHHHHHh------------------------
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAIT------------------------ 53 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~------~~~~fv~~~~~~~a~~------------------------ 53 (131)
.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~l 120 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTL 120 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCCEE
Confidence 6799999999999999999999999999999987 5899999999999998
Q ss_pred -------------------hcC--CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 54 -------------------VTG--LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 54 -------------------~~g--~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.+| +..+.+.. ...+.++|||||+|.+.++|.+|+..|+|. .++|+.|.|.|+.+
T Consensus 121 ~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 121 WMTNFPPSYTQRNIRDLLQDINVVALSIRLPS--LRFNTSRRFAYIDVTSKEDARYCVEKLNGL--KIEGYTLVTKVSNP 196 (292)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCC
T ss_pred EEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCC
Confidence 233 22222222 223678999999999999999999999998 89999999999987
Q ss_pred CCCC
Q psy1185 113 QEEP 116 (131)
Q Consensus 113 ~~~~ 116 (131)
+...
T Consensus 197 ~~~~ 200 (292)
T 2ghp_A 197 LEKS 200 (292)
T ss_dssp C---
T ss_pred Cccc
Confidence 6643
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.1e-20 Score=119.06 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=77.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD---------------------------RFTGMHKGCAFLTYCE 64 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC---------------------------SSSCSCCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---------------------------CCCCCcceEEEEEECC
Confidence 4689999999999999999999999999999998854 3468889999999999
Q ss_pred HHhHHHHHHHHhCCccee---cCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKV---WGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~---~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .+ .|+.|.|.|+.++....
T Consensus 65 ~~~A~~A~~~l~g~--~~~~~~g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 65 RESALKAQSALHEQ--KTLPGMNRPIQVKPADSESRGG 100 (106)
T ss_dssp HHHHHHHHHHHTTT--CCCTTCSSCCEEEECCCCSCCC
T ss_pred HHHHHHHHHHhcCC--cccCCCCceEEEEECCcccccC
Confidence 99999999999997 55 88999999999877644
No 56
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=119.87 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=72.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.++.+++ .+|||||+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------------------------------~kg~aFVef~~~ 61 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------------------------------FKRQALVEFENI 61 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------------------------------TTTEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------------------------------CCCEEEEEECCH
Confidence 67999999999999999999999999999998873 279999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|++.+++.++.++|+.|.|.||.++...
T Consensus 62 ~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 999999999988656799999999999876543
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=116.71 Aligned_cols=80 Identities=28% Similarity=0.448 Sum_probs=73.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.+++||||+|.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD---------------------------KDTRKSKGVAFILFLD 67 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC---------------------------SSSCCCTTCEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC---------------------------CCCCCcccEEEEEECC
Confidence 3679999999999999999999999999999998854 3357889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++|.+|++.|++. .++|+.|+|+||+
T Consensus 68 ~~~A~~A~~~l~g~--~~~g~~l~v~~ak 94 (94)
T 2e5h_A 68 KDSAQNCTRAINNK--QLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHHHHHTTTE--EETTEEEEEEECC
T ss_pred HHHHHHHHHHcCCC--eeCCcEEEEEecC
Confidence 99999999999997 8999999999985
No 58
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.2e-20 Score=118.73 Aligned_cols=85 Identities=21% Similarity=0.445 Sum_probs=76.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++++ .++.++|||||+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------------~~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG----------------------------PDGSSKGCAFVKFSS 65 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC----------------------------SSSCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----------------------------CCCCcCcEEEEEeCC
Confidence 3689999999999999999999999999999998854 267889999999999
Q ss_pred HHhHHHHHHHHhCCcceecC---cEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWG---CDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g---~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .+.| +.|.|.||.++.++.
T Consensus 66 ~~~A~~Ai~~l~g~--~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 66 HTEAQAAIHALHGS--QTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp HHHHHHHHHHHSSC--CCCTTCSSCCEEEESCSSCCCS
T ss_pred HHHHHHHHHHHcCC--ccCCCCCccEEEEECccCcccC
Confidence 99999999999998 6777 999999999887654
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.5e-21 Score=118.47 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=76.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCee-EEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVE-RVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||.++++++|+++|++||.|. ++++++. ..++.++|||||+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~---------------------------~~~g~~~g~afV~f~ 60 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN---------------------------RLTGIPAGYCFVEFA 60 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC---------------------------SSSCCEEEEEEEECS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec---------------------------CCCCCcCCEEEEEeC
Confidence 368999999999999999999999999999 9998854 346788999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcE----EEEEecCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCD----IIVDWADPQEEP 116 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~----l~v~~a~~~~~~ 116 (131)
+.++|.+|+..|++. .++|+. |+|.||.+...+
T Consensus 61 ~~~~a~~A~~~l~g~--~~~g~~~~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 61 DLATAEKCLHKINGK--PLPGATPAKRFKLNYATYSGPS 97 (99)
T ss_dssp CHHHHHHHHHTTTTS--EESSCSSCEECCEEETTCCSSS
T ss_pred CHHHHHHHHHHHcCC--ccCCCCcceeEEEeecCCCCCC
Confidence 999999999999998 899999 999999987644
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=120.85 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=76.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++++ .++.++|||||+|.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------------~~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD----------------------------RTSKSRGFAFITFEN 57 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS----------------------------TTTTCCCEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC----------------------------CCCCcccEEEEEECC
Confidence 4689999999999999999999999999999998854 268889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..|+|. .++|+.|.|.||+++...
T Consensus 58 ~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 58 PADAKNAAKDMNGK--SLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHHHHHHHHHCSSC--BCSSSBCEEEECCCSSCS
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEECCCCCCC
Confidence 99999999999998 899999999999876643
No 61
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=123.27 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=73.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---------------------------------kG~AFVeF~~~ 77 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------------------------------KNQAFIEMNTE 77 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---------------------------------GTEEEEECSCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------------------------------CCEEEEEECCH
Confidence 679999999999999999999999999999998842 79999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|+..+++.+..++|+.|.|.||+++....
T Consensus 78 e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 78 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred HHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 9999999999863347999999999999877654
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=118.01 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=75.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+.. ++.+++||||+|.+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------------~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------------------------------RRGGPPFAFVEFED 70 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------------------------------SSSSSCCEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------------------------------CCCCCcEEEEEECC
Confidence 367999999999999999999999999999998863 35579999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .++|+.|.|+|++++....
T Consensus 71 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 71 PRDAEDAVYGRDGY--DYDGYRLRVEFPRSGRGTG 103 (109)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEECCCCCCCCC
T ss_pred HHHHHHHHHHcCCC--EECCeEEEEEEcccCCCCC
Confidence 99999999999998 8999999999999876543
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=1.6e-21 Score=122.15 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=74.5
Q ss_pred ceEEEEeCCCC------CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 4 VKVLYVRNLTQ------YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 4 ~~~l~v~nLp~------~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.++|||+|||. ++++++|+++|++||.|.++++++. ..+|.++||||
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d---------------------------~~tg~~kG~af 58 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID---------------------------EATGKTKGFLF 58 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE---------------------------TTTTEECSEEE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc---------------------------CCCCccceEEE
Confidence 67999999999 9999999999999999999998854 34688999999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecC-cEEEEEecCCC
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWG-CDIIVDWADPQ 113 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g-~~l~v~~a~~~ 113 (131)
|+|.+.++|.+|+..|+|. .++| +.|.|.||.++
T Consensus 59 V~f~~~~~A~~Ai~~lng~--~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 59 VECGSMNDAKKIIKSFHGK--RLDLKHRLFLYTMKDV 93 (100)
T ss_dssp EEESSHHHHHHHHHHHTTC--BSSSSCBCEEEESHHH
T ss_pred EEECCHHHHHHHHHHhCCc--ccCCCeEEEEEECchh
Confidence 9999999999999999998 8899 99999999753
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=116.19 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=74.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ..++.+++||||+|.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 66 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD---------------------------QQSRRSRGFAFVYFEN 66 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC---------------------------SSSSSEEEEEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc---------------------------CCCCCcccEEEEEECC
Confidence 3678999999999999999999999999999998853 3357889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|+..|++. .++|+.|.|+||++
T Consensus 67 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 67 VDDAKEAKERANGM--ELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHHHHHHTTE--EETTEEEEEECCSC
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEecCC
Confidence 99999999999997 89999999999975
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=117.75 Aligned_cols=87 Identities=22% Similarity=0.487 Sum_probs=77.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+++++. ...++.+++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--------------------------~~~~~~~~g~afV~f~~ 67 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK--------------------------MTGTGAHRGFGFVDFIT 67 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC--------------------------CSSSCSSCSEEEEEESS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC--------------------------CCCCCCcCceEEEEECC
Confidence 3679999999999999999999999999999988742 01267889999999999
Q ss_pred HHhHHHHHHHH-hCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRL-ATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l-~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..| ++. .++|+.|.|.||.++.+..
T Consensus 68 ~~~a~~A~~~l~~~~--~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 68 KQDAKKAFNALCHST--HLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp HHHHHHHHHHHHTCC--BSSSCBCEEEECCCCCCCC
T ss_pred HHHHHHHHHHhccCC--eECCCEEEEEeCCCCCCCC
Confidence 99999999999 887 8899999999999887654
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=119.34 Aligned_cols=86 Identities=21% Similarity=0.306 Sum_probs=77.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCee--------EEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--------RVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRG 74 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 74 (131)
..++|||+|||.++++++|+++|++||.|. .++++.. ..++.++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---------------------------~~~g~~~g 66 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD---------------------------KETGKPKG 66 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC---------------------------TTTCSBCS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe---------------------------CCCCCeee
Confidence 468999999999999999999999999998 5777643 34788899
Q ss_pred eEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 75 FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 75 ~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
||||+|.+.++|.+|+..|++. .++|+.|+|.|+.++.+..
T Consensus 67 ~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDGK--DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTC--EETTEECEEECSSCCCCST
T ss_pred EEEEEECCHHHHHHHHHHcCCC--ccCCCEEEEEECCCCCCCC
Confidence 9999999999999999999998 8999999999999887654
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=116.87 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=75.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCC-CCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN-KKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~-~~~~~~~fv~f~ 81 (131)
..++|||+|||.++++++|+++|++|| |.++.+++. ..+ +.++|||||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~---------------------------~~~~g~~~g~afV~f~ 65 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE---------------------------PSNPERLKGFGYAEFE 65 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC---------------------------SSCTTSBCSCEEEEES
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC---------------------------CCCCCCcCeEEEEEEC
Confidence 468999999999999999999999999 999988753 223 788999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+ .+++. .++|+.|.|.|+.++.+..
T Consensus 66 ~~~~a~~A~-~l~g~--~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 66 DLDSLLSAL-SLNEE--SLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp SHHHHHHHH-GGGTC--EETTEECEEEECCCCCCCC
T ss_pred CHHHHHHHH-hcCCC--EeCCcEEEEEEccCCCCCC
Confidence 999999999 99998 8999999999999887654
No 68
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=2.1e-20 Score=117.47 Aligned_cols=80 Identities=38% Similarity=0.671 Sum_probs=73.4
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
|+..++|||+|||.++++++|+++|++||.|..+.++ ++||||+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------------------------------~~~afV~f 52 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------------------------------KDYAFIHF 52 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------------------------------SSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------------------------------CCEEEEEe
Confidence 5678899999999999999999999999999999876 46899999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.+.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 53 ~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 53 DERDGAVKAMEEMNGK--DLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp SSHHHHHHHHHHHTTE--EETTEEEEEEECCCCCCCC
T ss_pred CCHHHHHHHHHHHCCC--ccCCCEEEEEEcCCCcccc
Confidence 9999999999999998 8999999999999877654
No 69
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=118.96 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=74.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. .+.++|||||+|.+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------------------------~~~~kg~afV~f~~ 78 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-----------------------------ERGSKGFGFVTFEN 78 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-----------------------------TTBCTTEEEEECCC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-----------------------------CCCCceEEEEEECC
Confidence 4689999999999999999999999999999998853 34579999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|+..|+|. .++|+.|.|+||.++.
T Consensus 79 ~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 79 SADADRAREKLHGT--VVEGRKIEVNNATARV 108 (109)
T ss_dssp SHHHHHHHHHHTTC--EETTEECEEEECCCSC
T ss_pred HHHHHHHHHHcCCC--EECCEEEEEEECCCCc
Confidence 99999999999998 8999999999998763
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=1.2e-20 Score=123.41 Aligned_cols=84 Identities=30% Similarity=0.462 Sum_probs=76.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---------------------------~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD---------------------------QQSRRSRGFAFVYFEN 97 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC---------------------------SSSSCCCCEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCccceEEEEEECC
Confidence 3678999999999999999999999999999998854 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|+..|++. .++|+.|.|+|+.++.+
T Consensus 98 ~~~A~~Ai~~lng~--~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 98 VDDAKEAKERANGM--ELDGRRIRVDFSITKRP 128 (129)
T ss_dssp HHHHHHHHHHHTTC--CSSSSCCEESCCSSSSC
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEEecCCCC
Confidence 99999999999998 88999999999998764
No 71
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=116.48 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=73.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRG 74 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 74 (131)
..++|||+|||.++++++|+++|++||.|.+ +++++. ..+|.++|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---------------------------~~~g~~~G 64 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---------------------------RETGKLKG 64 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC---------------------------TTTCSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec---------------------------CCCCCeee
Confidence 3679999999999999999999999999999 887753 34688899
Q ss_pred eEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 75 FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 75 ~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
||||+|.+.++|.+|++.|+|. .++|+.|+|+||+
T Consensus 65 ~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~A~ 99 (99)
T 2la6_A 65 EATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTC--BSSSSBCEEEECC
T ss_pred EEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEecC
Confidence 9999999999999999999998 8899999999984
No 72
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5e-20 Score=112.97 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++ ++||||+|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------------------------------~g~afV~f~~ 51 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------------------------------KNYGFVHIED 51 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------------------------------TTEEEEEESS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------------------------------CCEEEEEECC
Confidence 47899999999999999999999999999999876 5789999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..+++. .++|+.|+|+|+.++....
T Consensus 52 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 52 KTAAEDAIRNLHHY--KLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp HHHHHHHHHHHTTC--BCSSCBCEEECSSCCCCCC
T ss_pred HHHHHHHHHHhcCC--ccCCcEEEEEECCCCCCCC
Confidence 99999999999998 8999999999999877654
No 73
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=115.09 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++++ ++||||+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------------------------------~g~afV~f~~ 62 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------------------------------DSFAYIQYES 62 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------------------------------SCCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------------------------------CCEEEEEECC
Confidence 3579999999999999999999999999999988632 7899999999
Q ss_pred HHhHHHHHHHHhCCcceec--CcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVW--GCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~--g~~l~v~~a~~~~~~ 116 (131)
.++|.+|++.|++. .++ |+.|+|+|+.++...
T Consensus 63 ~~~A~~A~~~l~g~--~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 63 LDAAQAACAKMRGF--PLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp HHHHHHHHHHHTTC--BCSSSSCBCEEEECCCCCCC
T ss_pred HHHHHHHHHHHCCC--EeCCCCcEEEEEECCCCCCC
Confidence 99999999999998 778 999999999987654
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=128.20 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=75.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
..++|||||||+++++++|+++|++|| .|.+++++++ ..+|.++|||||+|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d---------------------------~~tg~skGfaFV~f 106 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN---------------------------RANGQSKGYAEVVV 106 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC---------------------------TTTCCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec---------------------------CCCCccceEEEEEE
Confidence 357999999999999999999999999 9999998854 34788999999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.+.++|.+|+..|+|. .++|+.|.|.+|.++.
T Consensus 107 ~~~~~A~~Ai~~lng~--~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 107 ASENSVHKLLELLPGK--VLNGEKVDVRPATRQN 138 (156)
T ss_dssp SCHHHHHHHHHHSTTC--EETTEECEEEECCHHH
T ss_pred CCHHHHHHHHHHcCCC--EECCeEeEEEEcCCCc
Confidence 9999999999999998 8999999999998654
No 75
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=114.51 Aligned_cols=80 Identities=29% Similarity=0.345 Sum_probs=73.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..+.+++||||+|.+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~----------------------------~~g~~~g~afV~f~~ 66 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD----------------------------REGKPKSFGFVCFKH 66 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC----------------------------TTSCEEEEEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC----------------------------CCCCCceEEEEEECC
Confidence 3679999999999999999999999999999998853 247789999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|+..|++. .++|+.|.|+||++
T Consensus 67 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 67 PESVSYAIALLNGI--RLYGRPINVSGPSS 94 (95)
T ss_dssp THHHHHHHHHHTTC--EETTEECEEECCCC
T ss_pred HHHHHHHHHHhCCC--EECCCEEEEEEcCC
Confidence 99999999999998 89999999999875
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.4e-20 Score=115.90 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=75.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++|| |.++++++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD---------------------------KDTDKFKGFCYVEFDE 65 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC---------------------------SSSCSEEEEEEEEESS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec---------------------------CCCCccceEEEEEECC
Confidence 468999999999999999999999997 999998854 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+ .|++. .++|+.|.|.|+.++....
T Consensus 66 ~~~a~~A~-~l~g~--~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 66 VDSLKEAL-TYDGA--LLGDRSLRVDIAEGRKQDK 97 (103)
T ss_dssp HHHHHHHG-GGTTC--EETTEECEEEECCCCCCCC
T ss_pred HHHHHHHH-hhCCC--eECCeEEEEEEecCCCCCC
Confidence 99999999 89998 8999999999999877654
No 77
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=4.8e-20 Score=123.68 Aligned_cols=86 Identities=33% Similarity=0.459 Sum_probs=77.7
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|.++.++.. ..++.+++||||+|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~ 89 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD---------------------------KMKKTACGFCFVEYY 89 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------TTTCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCccceEEEEEEC
Confidence 45789999999999999999999999999999998854 336778999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
+.++|.+|+..|++. .++|+.|.|.||.+..+.
T Consensus 90 ~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 90 SRADAENAMRYINGT--RLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp SHHHHHHHHHHTTTS--EETTEECEEEEESCCCTT
T ss_pred CHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCc
Confidence 999999999999998 899999999999876653
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=3e-20 Score=120.48 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=77.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++.. ..++.++|||||+|.+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD---------------------------RRTGYLKGYTLVEYET 73 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---------------------------TTTSSBCSCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCccceEEEEEECC
Confidence 4679999999999999999999999999999988753 3478889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.||.++..+.
T Consensus 74 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 74 YKEAQAAMEGLNGQ--DLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp HHHHHHHHHHHTTC--BSSSSBCEEEESEESSSCC
T ss_pred HHHHHHHHHHhCCC--eeCCeEEEEEEecCCCCCC
Confidence 99999999999998 8899999999998766544
No 79
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=5e-20 Score=134.22 Aligned_cols=109 Identities=15% Similarity=0.289 Sum_probs=88.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEe-------cCeEEEEECCHHHHHhh--------------------
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI-------KDYAFVHFEDRQEAITV-------------------- 54 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~i~-------~~~~fv~~~~~~~a~~~-------------------- 54 (131)
..++|||+|||.++++++|+++|++|| .|..+.++ +|||||+|.+.++|..+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 468999999999999999999999999 99999986 69999999999999981
Q ss_pred ---------------------------------------cC-CceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHh
Q psy1185 55 ---------------------------------------TG-LSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLA 94 (131)
Q Consensus 55 ---------------------------------------~g-~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 94 (131)
+| +..+.+..+...+|.++|+|||+|.+.++|.+|+ .|+
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 11 1111111111113788999999999999999999 999
Q ss_pred CCcceecCcEEEEEecCCCC
Q psy1185 95 TGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 95 ~~~~~~~g~~l~v~~a~~~~ 114 (131)
|. .++|+.|.|.||.+++
T Consensus 275 g~--~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 275 RS--LLGNREISVSLADKKP 292 (292)
T ss_dssp TE--EETTEEEEEEECCCCC
T ss_pred CC--EECCcEEEEEEecCCC
Confidence 98 8999999999999864
No 80
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=122.44 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=77.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 93 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD---------------------------RETRQSRGYGFVKFQS 93 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE---------------------------TTTTEEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---------------------------CCCCCcceEEEEEECC
Confidence 3579999999999999999999999999999998854 3367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|+|.||.++..+.
T Consensus 94 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 94 GSSAQQAIAGLNGF--NILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHHHHHHHHTTTE--ECSSCEEEEEESSCCCCCC
T ss_pred HHHHHHHHHHhCCC--EECCeEEEEEECCCCCCCC
Confidence 99999999999997 8999999999999877654
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=3.2e-20 Score=124.56 Aligned_cols=85 Identities=31% Similarity=0.464 Sum_probs=77.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.+++++++ ..+|.++|||||+|.+.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~---------------------------~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---------------------------RYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC---------------------------SSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec---------------------------CCCCccceEEEEEECCH
Confidence 579999999999999999999999999999998854 34788999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|+..|+|. .++|+.|.|.||.++.++.
T Consensus 123 ~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 123 RDAEDAMDAMDGA--VLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHHHHHSTTE--ESSSSEEEEEEECCSSCCC
T ss_pred HHHHHHHHHhCCC--EECCeEEEEEECCCCCCCC
Confidence 9999999999998 8999999999999876654
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=3.4e-20 Score=117.87 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=74.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.+++++++ ..+|.++|||||+|.+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------------------------~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---------------------------PLTKRSRGFGFVTFMD 76 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC---------------------------TTTCCCTTCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC---------------------------CCCCCcCcEEEEEECC
Confidence 3679999999999999999999999999999998854 3468899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..++ . .++|+.|.|.++.++...
T Consensus 77 ~~~A~~Ai~~~~-~--~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 77 QAGVDKVLAQSR-H--ELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp HHHHHHHHHSSC-E--EETTEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHCC-C--cCCCEEEEEEEccCCCCC
Confidence 999999999874 4 899999999999987754
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=6.5e-20 Score=115.68 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=73.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||..+++++|+++|++||.|.++.+++. .++.++|||||+|.+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------------~~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD----------------------------RSGRSLGTADVHFER 79 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC----------------------------TTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----------------------------CCCCcceEEEEEECC
Confidence 4689999999999999999999999999999998854 277889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|+..|++. .++|+.|.|+||.+
T Consensus 80 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~s 107 (107)
T 3ulh_A 80 KADALKAMKQYNGV--PLDGRPMNIQLVTS 107 (107)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred HHHHHHHHHHhCCC--EeCCcEEEEEEeCC
Confidence 99999999999998 89999999999863
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=117.59 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||.++++++|+++|++ ||.|.++++++. . ++.++|||||+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~---------------------------~-~g~~~g~afV~f~ 59 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD---------------------------Q-TGVSKGYGFVKFT 59 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC---------------------------T-TCCEEEEEEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC---------------------------C-CCCccceEEEEEC
Confidence 4679999999999999999999999 999999998854 2 7788999999999
Q ss_pred CHHhHHHHHHHHhCCcce-ecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLK-VWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~-~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..|++. . ++|+.|.|.|+.++....
T Consensus 60 ~~~~a~~A~~~l~g~--~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 60 DELEQKRALTECQGA--VGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp CHHHHHHHHHHTTTC--CSSSSSCCCCCBCCCCCSCC
T ss_pred CHHHHHHHHHHccCC--cccCCEeEEEEEccCCCcCC
Confidence 999999999999998 7 899999999998776543
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=117.89 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=71.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++|+++|+++|++||+|.++++++. . .+.++|||||+|.+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d---------------------------~-~g~~rG~aFV~F~~~ 62 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT---------------------------L-HKAFKGSIFVVFDSI 62 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC---------------------------C-TTSCCCEEEEEESSH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC---------------------------C-CCCCccEEEEEECCH
Confidence 579999999999999999999999999999998864 2 388999999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
++|.+|+. +++. .++|+.|.|.|+..
T Consensus 63 e~a~~Ai~-~~~~--~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 63 ESAKKFVE-TPGQ--KYKETDLLILFKDD 88 (103)
T ss_dssp HHHHHHHT-SSCC--CCTTTTCEEEEHHH
T ss_pred HHHHHHHH-cCCC--EECCEEEEEEEchH
Confidence 99999999 8887 89999999999763
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.8e-21 Score=118.50 Aligned_cols=84 Identities=36% Similarity=0.525 Sum_probs=71.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+.
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~~ 53 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD---------------------------RETKKPKGFGFVEMQEE 53 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC---------------------------SSSCCCCEEEEEEECTT
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc---------------------------CCCCCcceEEEEEECCH
Confidence 479999999999999999999999999999998854 34688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+ |.+|+..++|. .++|+.|+|+||.++....
T Consensus 54 ~-a~~a~~~l~g~--~~~g~~l~V~~a~~~~~~~ 84 (90)
T 2ki2_A 54 S-VSEAIAKLDNT--DFMGRTIRVTEANPKKSLE 84 (90)
T ss_dssp H-HHHHHHTSCSS--CCSSSSCSEEEC-------
T ss_pred H-HHHHHHHhCCC--EECCeEEEEEEcCCCCCCC
Confidence 9 99999999998 8899999999998876543
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=118.14 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=76.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++.+++. ..+|.++|||||+|.+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~---------------------------~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD---------------------------RETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE---------------------------TTTTEEEEEEEEECSCH
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC---------------------------CCCCccceEEEEEECCH
Confidence 579999999999999999999999999999998853 33678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|++.++|. .++|+.|.|.||.++...
T Consensus 61 ~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 61 ETALSAMRNLNGR--EFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHHHHHHHHSSSB--SCSSSCBEEEETTCTTHH
T ss_pred HHHHHHHHHhCCC--eeCCcEEEEEeCCCccch
Confidence 9999999999998 889999999999986643
No 88
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=118.09 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=75.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.+++||||+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD---------------------------RQTGKSRGYGFVTMAD 68 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC---------------------------SSSCCCCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc---------------------------CCCCccceEEEEEECC
Confidence 4689999999999999999999999999999998854 3468889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..+++ .++|+.|.|+||.+...+
T Consensus 69 ~~~a~~Ai~~~~~---~~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 69 RAAAERACKDPNP---IIDGRKANVNLAYLGAKP 99 (116)
T ss_dssp HHHHHHHHTCSSC---EETTEECEEEESTTTCCC
T ss_pred HHHHHHHHHhCCC---cCCCEEEEEEEcccCCCc
Confidence 9999999999997 689999999999765443
No 89
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=120.60 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=72.8
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||++ +++++|+++|++||.|.++.+++ ++|||||+|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------------------------------~kg~aFVef~ 70 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------------------------------MKSQAFIEME 70 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------------------------------TTTEEEEECS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------------------------------CCCEEEEEEC
Confidence 3679999999998 99999999999999999999874 3899999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
+.++|.+|++.|++....++|+.|.|+||..+...
T Consensus 71 ~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 71 TREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp SHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred CHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 99999999999987545799999999999876654
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.3e-20 Score=112.42 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=71.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++ ++||||+|.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------------------------------~~~afV~f~~ 53 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------------------------------KDYAFVHMER 53 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------------------------------SSEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------------------------------CCEEEEEECC
Confidence 46899999999999999999999999999999886 4589999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|+|+.++....
T Consensus 54 ~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 54 AEDAVEAIRGLDNT--EFQGKRMHVQLSTSRLRTA 86 (92)
T ss_dssp HHHHHHHHHHHTTE--EETTEEEEEEESSCCCSCC
T ss_pred HHHHHHHHHHhCCC--eeCCcEEEEEEccCCCCCC
Confidence 99999999999998 8999999999999876654
No 91
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=1.5e-19 Score=127.99 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=88.5
Q ss_pred CceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEe---cCeEEEEECCHHHHHhhc----C--Cc--------------
Q psy1185 3 KVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITVT----G--LS-------------- 58 (131)
Q Consensus 3 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~---~~~~fv~~~~~~~a~~~~----g--~~-------------- 58 (131)
..++|||+|||. ++++++|+++|++||.|.+++++ +|||||+|.+.++|+.+. | +.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 368999999999 99999999999999999999998 799999999999999811 0 00
Q ss_pred --------------------------------------eeEEec--CCC------------CC----------CCCcceE
Q psy1185 59 --------------------------------------QVIIYS--SPD------------DN----------KKNRGFC 76 (131)
Q Consensus 59 --------------------------------------~~~~~~--~~~------------~~----------~~~~~~~ 76 (131)
...+++ .+. .. ...+|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~a 192 (229)
T 2adc_A 113 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 192 (229)
T ss_dssp CCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCE
T ss_pred cCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEE
Confidence 011211 111 01 2257999
Q ss_pred EEEeCCHHhHHHHHHHHhCCcceec-CcEEEEEecCCC
Q psy1185 77 FLEYDSHKSASLAKKRLATGRLKVW-GCDIIVDWADPQ 113 (131)
Q Consensus 77 fv~f~~~~~a~~a~~~l~~~~~~~~-g~~l~v~~a~~~ 113 (131)
||+|.+.++|.+|+..|+|. .++ |+.|+|.||+++
T Consensus 193 fV~f~~~~~A~~Ai~~l~g~--~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 193 LIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEESSHHHHHHHHHHHTTC--BSSSSCBCEEEECSSC
T ss_pred EEEECCHHHHHHHHHHHCCC--ccCCCCeEEEEEecCC
Confidence 99999999999999999998 778 999999999875
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-20 Score=115.98 Aligned_cols=80 Identities=16% Similarity=0.419 Sum_probs=73.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++. ++||||+|.+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------------~g~afV~f~~ 70 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------------------------------KGYSFVRFST 70 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------------------------------TTEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------------------CCEEEEEECC
Confidence 4679999999999999999999999999999998742 8999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|+|.|++++....
T Consensus 71 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 71 HESAAHAIVSVNGT--TIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEECCCCCCSSC
T ss_pred HHHHHHHHHHcCCC--EECCcEEEEEecCCCCCCC
Confidence 99999999999998 8999999999999877654
No 93
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.5e-20 Score=119.59 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=72.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---------------------------~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID---------------------------KQTSLSKCFGFVSFDN 91 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC---------------------------SSSSCCCCEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------------CCCCCcCcEEEEEECC
Confidence 3589999999999999999999999999999998853 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
.++|.+|++.|++. .++|+.|+|+|++
T Consensus 92 ~~~A~~A~~~l~g~--~~~g~~l~V~~ak 118 (118)
T 2khc_A 92 PDSAQVAIKAMNGF--QVGTKRLKVQLKK 118 (118)
T ss_dssp SHHHHHHHHHCCCC--EETTEECCEEEC-
T ss_pred HHHHHHHHHHcCCC--EECCEEEEEEecC
Confidence 99999999999998 8999999999985
No 94
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=4.1e-20 Score=118.10 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=70.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------------------------------~~~rGfaFV~F~ 75 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------------------------------RDFDGTGALEFP 75 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------------------------------CSSSCCEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------------------------------CCCCCEEEEEEC
Confidence 357999999999999999999999999 899988752 347899999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+.++|.+|++.|+|. .++|+.|.|.++..+++
T Consensus 76 ~~e~A~~Ai~~lng~--~l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 76 SEEILVEALERLNNI--EFRGSVITVERDDNPPP 107 (111)
T ss_dssp SHHHHHHHHHHTTTE--EETTEEEEEEESCC---
T ss_pred CHHHHHHHHHHcCCC--EECCeEEEEEECCCCCC
Confidence 999999999999998 89999999999986543
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=117.35 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=73.2
Q ss_pred ceEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 4 VKVLYVRNLTQYC------TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 4 ~~~l~v~nLp~~~------t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.++|||+|||+.+ ++++|+++|++||.|.++.+++ .+|.++||||
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-----------------------------~~g~~~G~af 65 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----------------------------EDGKTKGYIF 65 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-----------------------------BTTBSCCEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-----------------------------CCCCeeeEEE
Confidence 5799999999999 7899999999999999998873 3788999999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCc-EEEEEecCCCC
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGC-DIIVDWADPQE 114 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~-~l~v~~a~~~~ 114 (131)
|+|.+.++|.+|+..|+|. .++|+ .|+|.||....
T Consensus 66 V~f~~~~~A~~Ai~~l~g~--~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 66 LEYASPAHAVDAVKNADGY--KLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp EEECSSSHHHHHHHHCSSE--ECSTTCEEEEECSCCCC
T ss_pred EEECCHHHHHHHHHHhCCc--ccCCCceEEEEEcchHh
Confidence 9999999999999999998 89998 99999997654
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=117.56 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|.++++++. .+|.++|||||+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----------------------------~~g~~~g~afV~f~ 84 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD----------------------------RSGRSLGTADVHFE 84 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC----------------------------SSSSCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC----------------------------CCCCEeeEEEEEEC
Confidence 34689999999999999999999999999999998854 26788999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..+++. .++|+.|.|+||.+.....
T Consensus 85 ~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 85 RRADALKAMKQYKGV--PLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp SHHHHHHHHHHHTTE--ESSSCEEEEEEECCTTCCC
T ss_pred CHHHHHHHHHHcCCC--EECCcEEEEEEeCCCCCCC
Confidence 999999999999998 8999999999998766543
No 97
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-20 Score=115.76 Aligned_cols=76 Identities=26% Similarity=0.580 Sum_probs=70.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------------------------------~~g~afV~f~~ 72 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------------------------------EKGCCFIKYDT 72 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------------------------------TTTEEEEECSS
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------------------------------CCCEEEEEECC
Confidence 368999999999999999999999999999998863 48999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.++|.+|+..|++. .++|+.|+|.||+++
T Consensus 73 ~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 73 HEQAAVCIVALANF--PFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHHHHHHHHHTTC--EETTEECCCCBCCCC
T ss_pred HHHHHHHHHHhCCC--eECCeEEEEEeccCC
Confidence 99999999999998 899999999999874
No 98
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=111.85 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=71.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++ ++||||+|.+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------------------------------~~~afV~f~~ 52 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------------------------------KDYAFVHMEK 52 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------------------------------SSCEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------------------------------CCEEEEEECC
Confidence 46899999999999999999999999999999886 4589999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 53 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 53 EADAKAAIAQLNGK--EVKGKRINVELSTKGQKKS 85 (90)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEESCCCCCCC
T ss_pred HHHHHHHHHHhCCC--EECCcEEEEEECCCCCCCC
Confidence 99999999999998 8999999999999876543
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=117.54 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=76.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++.+++. ..++.++|||||+|.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 67 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD---------------------------KTTNQSRGFGFVKFKD 67 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC---------------------------SSSCCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---------------------------CCCCCcceEEEEEECC
Confidence 4689999999999999999999999999999998853 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+.. ++. .++|+.|.|.|+.++.+..
T Consensus 68 ~~~a~~a~~~-~~~--~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 68 PNCVGTVLAS-RPH--TLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp TTHHHHHHHH-CSE--EETTEEEBCCCSCCSSCCT
T ss_pred HHHHHHHHHh-CCC--eECCEEEEEEEccCCCCCC
Confidence 9999999999 886 9999999999999877654
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=5.6e-20 Score=112.25 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=68.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
+.-||||||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------------------------------~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------------------------------NQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------------------------------TTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------------------------------CCcEEEEEECCH
Confidence 45799999999999999999999999999998862 599999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
++|.+|++.||+. .++|+.|+|++|
T Consensus 54 ~eA~~Ai~~Ln~~--~l~gr~I~V~~A 78 (89)
T 2wbr_A 54 EEANKAQMALNNC--VLANTTIFAESP 78 (89)
T ss_dssp HHHHHHHHHHTTE--EETTEEEEEECC
T ss_pred HHHHHHHHHhcCC--EECCcEEEEEEC
Confidence 9999999999997 999999999999
No 101
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=115.79 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=75.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++.+++. .++.+++||||+|.+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~----------------------------~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED----------------------------KDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC----------------------------TTCSEEEEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----------------------------CCCCeeeEEEEEECCH
Confidence 579999999999999999999999999999988853 2578899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|+..|++. .++|+.|.|.|++...+.
T Consensus 67 ~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 67 IEAVQAISMFNGQ--LLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEEECSCCCCC
T ss_pred HHHHHHHHHhCCC--EeCCCEEEEEEcccCCCC
Confidence 9999999999998 899999999999865443
No 102
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=115.09 Aligned_cols=78 Identities=24% Similarity=0.261 Sum_probs=70.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|. +.++. +.++|||||+|.+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------------------------------~~~~g~afV~f~~~ 66 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------------------------------QGPRRRAFLHYPDS 66 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------------------------------ETTTTEEEEECSSH
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------------------------------CCCCcEEEEEECCH
Confidence 67999999999999999999999999996 55552 35789999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
++|.+|+..|++. .++|+.|.|.|+.++.+
T Consensus 67 ~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 67 AAAQQAVSCLQGL--RLGTDTLRVALARQQRD 96 (97)
T ss_dssp HHHHHHHHHHTTC--CSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHHhCCC--EECCcEEEEEEcCCCCC
Confidence 9999999999998 88999999999998764
No 103
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=119.97 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=71.8
Q ss_pred ceEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 4 VKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
.++|||+|||+.+++++|+ ++|++||.|.++.+.+ ++.++|||||+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------------------------------~~~~rG~aFV~ 78 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------------------------------SDDNSGKAYIV 78 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------------------------------CCSSCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------------------------------CCCcCCEEEEE
Confidence 5799999999999999876 6999999999987753 56789999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
|.+.++|..|+..|+|. .+.|+.|+|.||+++.
T Consensus 79 F~~~~~A~~Ai~~lng~--~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 79 FATQESAQAFVEAFQGY--PFQGNPLVITFSETPQ 111 (127)
T ss_dssp ESSHHHHHHHHHHSTTC--CCTTSCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHCCC--EeCCCEEEEEEccCcc
Confidence 99999999999999998 8899999999999765
No 104
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=112.77 Aligned_cols=80 Identities=39% Similarity=0.586 Sum_probs=72.1
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
|...++|||+|||.++++++|+++|++| |.|..+.+. ++||||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------------------------------~g~afV 56 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------------------------------RDYAFV 56 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------------------------------SSEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------------------------------CCeEEE
Confidence 3567899999999999999999999999 899988764 679999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+|.+.++|.+|+..|++. .++|+.|.|.||+++....
T Consensus 57 ~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 57 HFSNREDAVEAMKALNGK--VLDGSPIEVTLAKPVDKDS 93 (99)
T ss_dssp EESSHHHHHHHHHHHSSE--EETTEEEEEECCCCCCCCC
T ss_pred EeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCCCCC
Confidence 999999999999999998 8999999999999876543
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.8e-20 Score=111.21 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
+|||+|||+++++++|+++|++||+|.++.+++. ..++.++|||||+|.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~~~~ 53 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD---------------------------KTTNRHRGFGFVTFESEDI 53 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC---------------------------SSSTTSCBEEEEECSCHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec---------------------------CCCCCcCcEEEEEECCHHH
Confidence 5899999999999999999999999999988754 3368889999999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEEec
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
|.+|+. +++. .++|+.|.|+||
T Consensus 54 a~~a~~-~~~~--~~~g~~l~v~~A 75 (75)
T 2mss_A 54 VEKVCE-IHFH--EINNKMVECKKA 75 (75)
T ss_dssp HHHHHS-SSCC--CSSSCCCEEECC
T ss_pred HHHHHH-CCCC--EECCEEEEEEeC
Confidence 999998 8988 899999999986
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=117.30 Aligned_cols=84 Identities=25% Similarity=0.404 Sum_probs=76.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~~ 79 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD---------------------------PASKRSRGFGFVTFSSM 79 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC---------------------------TTTSSCCSEEEEECSSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC---------------------------CCCCCcCceEEEEeCCH
Confidence 479999999999999999999999999999998854 34688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|+.. ++. .++|+.|.|.|+.++.+..
T Consensus 80 ~~a~~Ai~~-~~~--~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 80 AEVDAAMAA-RPH--SIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp HHHHHHHTS-CSE--EETTEEEEEECCSSCCCCC
T ss_pred HHHHHHHHh-CCc--EECCEEEEEEECCCCccCC
Confidence 999999998 776 8999999999999887654
No 107
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=3.5e-20 Score=114.91 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=73.7
Q ss_pred CceEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
..++|||+|||.++++++|+ ++|++||.|.++.+++ ++.++|||||
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------------------------------~~~~~g~afV 56 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------------------------------SLKMRGQAFV 56 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------------------------------HHHHTTCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------------------------------CCCcCcEEEE
Confidence 46899999999999999999 9999999999998763 3567899999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+|.+.++|.+|+..|+|. .++|+.|.|.|+.++.+
T Consensus 57 ~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 57 IFKEVSSATNALRSMQGF--PFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp EESSHHHHHHHHHHHTTC--EETTEECEEEECSSCCT
T ss_pred EeCCHHHHHHHHHHhCCC--EECCcEEEEEEccCCCc
Confidence 999999999999999998 88999999999998653
No 108
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=7.4e-20 Score=111.42 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=70.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 62 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD---------------------------PNTGRSRGFGFILFKD 62 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC---------------------------TTTCCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec---------------------------CCCCccccEEEEEECC
Confidence 4679999999999999999999999999999998854 3468889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
.++|.+|+.. ++. .++|+.|.|++|
T Consensus 63 ~~~a~~A~~~-~~~--~~~g~~i~v~~A 87 (87)
T 3s7r_A 63 AASVEKVLDQ-KEH--RLDGRVIDPKKA 87 (87)
T ss_dssp THHHHHHHHS-SCE--EETTEEEEEEEC
T ss_pred HHHHHHHHHh-CCC--EECCEEEEEEeC
Confidence 9999999965 665 799999999986
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=117.64 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=72.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCC-CCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPD-DNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~fv~f~ 81 (131)
..++|||+|||.++++++|+++|++|| |.++++++. . .+|.++|||||+|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~---------------------------~~~~g~~~g~afV~f~ 69 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE---------------------------PSNPERLKGFGYAEFE 69 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCC---------------------------TTTTCCCCSCEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEec---------------------------CCcCCccCeEEEEEEC
Confidence 468999999999999999999999999 999988753 2 36888999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+.++|.+|+ .++|. .++|+.|.|+||.++.
T Consensus 70 ~~~~a~~Ai-~l~g~--~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 70 DLDSLLSAL-SLNEE--SLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CHHHHHHHH-HTTTC--CBTTBCCCCEECCCSC
T ss_pred CHHHHHHHH-hcCCC--EECCeEEEEEeccCCC
Confidence 999999999 99998 8999999999998865
No 110
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=114.09 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=73.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+++++ +++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------------------------------~kg~afV~f~~ 60 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------------------------------DKGFGFIRLET 60 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------------------------------TTTEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------------------------------CCCEEEEEECC
Confidence 467999999999999999999999999999998874 37999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|++.|++. .++|+.|.|.|+.++....
T Consensus 61 ~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 61 RTLAEIAKVELDNM--PLRGKQLRVRFACHSASLT 93 (99)
T ss_dssp SHHHHHHHHHHTTC--CBTTBCCEEEESSCCSCCC
T ss_pred HHHHHHHHHHhCCC--EeCCceEEEEEcCCCCCCC
Confidence 99999999999998 8899999999999876543
No 111
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=115.72 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=73.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.++.. ..++.++|||||+|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---------------------------~~~g~~~g~afV~f~~ 66 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---------------------------NEKGMPTGEAMVAFES 66 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE---------------------------CSSSCEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE---------------------------CCCCCeeeEEEEEECC
Confidence 4689999999999999999999999999987666532 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|++.|++. .++|+.|+|+|+..+.
T Consensus 67 ~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 67 RDEATAAVIDLNDR--PIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HHHHHHHHHHTTTC--EETTEECEEEESSCSS
T ss_pred HHHHHHHHHHhCCC--eeCCeEEEEEEcCCCC
Confidence 99999999999998 8999999999998654
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=123.16 Aligned_cols=84 Identities=26% Similarity=0.384 Sum_probs=75.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeE--EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.++|||+|||+++++++|+++|++||.|.. +++++. ..+|.++|||||+|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d---------------------------~~tg~~rG~aFV~f~ 75 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD---------------------------KQTQLNRGFAFIQLS 75 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC---------------------------SSSSSBCSCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc---------------------------CCCCCcceEEEEEEC
Confidence 579999999999999999999999999976 888854 347889999999999
Q ss_pred CHHhHHHHHHHHhCC--cceecCcEEEEEecCCCCC
Q psy1185 82 SHKSASLAKKRLATG--RLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~--~~~~~g~~l~v~~a~~~~~ 115 (131)
+. +|.+|+..|++. ++.++|+.|.|+|+.++..
T Consensus 76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 99 999999999996 4478999999999988754
No 113
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=113.49 Aligned_cols=84 Identities=24% Similarity=0.285 Sum_probs=74.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+++++. ..++.++|||||+|.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD---------------------------LKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC---------------------------SSSCSEEEEEEEEESS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCCccceEEEEECC
Confidence 4678999999999999999999999999999998854 3468889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+.. +. .++|+.|.|.|+.++.+..
T Consensus 67 ~~~a~~A~~~--~~--~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 67 YETQVKVMSQ--RH--MIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp HHHHHHHHHS--CE--EETTEEEEEECCCTTCCCC
T ss_pred HHHHHHHHHc--CC--eeCCeEEEEEecCCCCcCC
Confidence 9999999984 54 8999999999999877654
No 114
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=111.45 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=70.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
++|||+|||.++++++|+++|++||+|.++.++++ ..++.++|+|||+|.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---------------------------~~~~~~~g~afV~f~~~~ 53 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---------------------------PLTKRSRGFGFVTFMDQA 53 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC---------------------------CCSSSCSSEEEECCCCTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC---------------------------CCCCCcCceEEEEEcCHH
Confidence 58999999999999999999999999999998854 346888999999999999
Q ss_pred hHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 85 SASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 85 ~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
+|.+|+..++ . .++|+.|.|+||
T Consensus 54 ~a~~a~~~~~-~--~~~g~~l~v~~a 76 (77)
T 1uaw_A 54 GVDKVLAQSR-H--ELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTT-C--CCSSCCCEEEEC
T ss_pred HHHHHHHhCC-C--ccCCEEEEEEec
Confidence 9999999999 5 899999999997
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-20 Score=114.39 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=73.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++.++.. ..++.++|||||+|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---------------------------~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD---------------------------KTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC---------------------------SSSCSCCSEEEEEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCCcCcEEEEEECC
Confidence 4689999999999999999999999999999998853 3468889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|++.|+|. .++|+.++++|+.+
T Consensus 57 ~~~a~~A~~~l~g~--~~~g~~~~~~~~~s 84 (85)
T 1x4e_A 57 PSAAQKAVTALKAS--GVQAQMAKQSGPSS 84 (85)
T ss_dssp HHHHHHHHHHHHHH--TCCEESCCSSCCCC
T ss_pred HHHHHHHHHHhcCC--eEeeEEEeecCCCC
Confidence 99999999999998 88999998888653
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.4e-20 Score=122.81 Aligned_cols=85 Identities=31% Similarity=0.464 Sum_probs=77.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+.
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---------------------------RYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC---------------------------SSSSSCCSCCEEECSCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---------------------------CCCCccceEEEEEECCH
Confidence 578999999999999999999999999999988753 33678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
++|.+|+..|++. .++|+.|.|+|++++.++.
T Consensus 100 ~~A~~Ai~~l~g~--~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 100 RDAEDAMDAMDGA--VLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHHHHHHTTTTTC--CSSSSCCEEEECCCCCCCT
T ss_pred HHHHHHHHHcCCC--EECCEEEEEEECCCCCCCc
Confidence 9999999999998 8899999999999877654
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=8.1e-20 Score=118.14 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=75.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++.+++. ..++.++|||||+|.+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~~ 88 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD---------------------------KFSGHPKGYAYIEFAER 88 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE---------------------------CTTSSCEEEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---------------------------CCCCCcccEEEEEECCH
Confidence 579999999999999999999999999999998853 34688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|+ .+++. .++|+.|.|.|+++..+.
T Consensus 89 ~~a~~A~-~l~g~--~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 89 NSVDAAV-AMDET--VFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp HHHHHHH-TTTTC--EETTEECEEEESSCCCSS
T ss_pred HHHHHHH-hcCCC--eECCeEEEEEECCCCCCC
Confidence 9999999 89998 899999999999876654
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-20 Score=117.65 Aligned_cols=81 Identities=22% Similarity=0.458 Sum_probs=73.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|..+.+++. ..++.++|||||+|.+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~~ 77 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD---------------------------RNSRRSKGIAYVEFCEI 77 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS---------------------------CCSSSCCCCEEEEESCG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec---------------------------CCCCccCcEEEEEeCcH
Confidence 479999999999999999999999999999998854 33578899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
++|.+|+ .+++. .++|+.|.|.|+.++.
T Consensus 78 ~~a~~A~-~l~g~--~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 78 QSVPLAI-GLTGQ--RLLGVPIIVQASQAEK 105 (114)
T ss_dssp GGHHHHH-HHTTE--EETTEEEEEEEHHHHH
T ss_pred HHHHHHH-HcCCC--EeCCeEEEEEecCCCc
Confidence 9999999 99998 8999999999987543
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.1e-19 Score=123.06 Aligned_cols=86 Identities=26% Similarity=0.489 Sum_probs=75.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||..+++++|+++|++||.|..+.+++. ..+|.++|||||+|.+.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---------------------------~~~g~~~g~afV~f~~~ 124 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---------------------------RRTGFSKGYALVEYETH 124 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------TTTSSEEEEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec---------------------------CCCCcEeeEEEEEECCH
Confidence 568999999999999999999999999999998854 34788899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
++|.+|+..|+|. .++|+.|.|.||.++.++..
T Consensus 125 ~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 125 KQALAAKEALNGA--EIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHHHHHHHHTTC--EETTEECEEEESEECC----
T ss_pred HHHHHHHHHhCCC--EECCEEEEEEEecCCCCCCC
Confidence 9999999999998 89999999999988776543
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=117.26 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred CceEEEEeCCCCCCCHHHHH---HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLK---EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
..++|||+|||+++++++|+ ++|++||.|.++.+++.- ....++.++|||||+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~------------------------~~~~~~~~~G~afV~ 69 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST------------------------SYAGSQGPSASAYVT 69 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS------------------------SCCSSSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC------------------------CcCccCCCCeEEEEE
Confidence 35789999999999999999 999999999999988430 001133567999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
|.+.++|.+|+..|++. .++|+.|+|.||.++..
T Consensus 70 f~~~~~A~~Ai~~lng~--~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 70 YIRSEDALRAIQCVNNV--VVDGRTLKASLGTTKYC 103 (111)
T ss_dssp ESSHHHHHHHHHHHTTE--EETTEEEEEESCCCCSC
T ss_pred ECcHHHHHHHHHHhCCC--EECCEEEEEEecccccc
Confidence 99999999999999998 89999999999998764
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=109.92 Aligned_cols=74 Identities=23% Similarity=0.476 Sum_probs=68.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++ ++|||||+|.+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------------------------------~kg~afV~f~~ 57 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------------------------------RQQCAFIQFAT 57 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------------------------------GGTEEEEEESS
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------------------------------CCCEEEEEECC
Confidence 467999999999999999999999999999999874 37999999999
Q ss_pred HHhHHHHHHHH-hCCcceecCcEEEEEecC
Q psy1185 83 HKSASLAKKRL-ATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 83 ~~~a~~a~~~l-~~~~~~~~g~~l~v~~a~ 111 (131)
.++|.+|++.| ++. .++|+.|+|+||+
T Consensus 58 ~~~A~~a~~~l~~~~--~~~g~~l~v~~ak 85 (85)
T 2ytc_A 58 RQAAEVAAEKSFNKL--IVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHHHTTTTTC--EETTEECCEEECC
T ss_pred HHHHHHHHHHhcCCe--eECCCEEEEEecC
Confidence 99999999999 877 8999999999985
No 122
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=110.69 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=74.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++| .|.+++++++ .+|.++|+|||+|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~----------------------------~~g~~~g~afV~f~~ 59 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN----------------------------AHGNKTGYIFVDFSN 59 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC----------------------------TTSCEEEEEEEECSS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC----------------------------CCCCCceEEEEEECC
Confidence 46799999999999999999999999 9999988853 367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|+. +++. .++|+.|.|.+|.++++
T Consensus 60 ~~~a~~A~~-~~g~--~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 60 EEEVKQALK-CNRE--YMGGRYIEVFREKSGPS 89 (91)
T ss_dssp HHHHHHHHH-SCSE--EETTEEEEEEEESSCCC
T ss_pred HHHHHHHHH-hCCc--eeCCcEEEEEECCcCCC
Confidence 999999999 9997 89999999999998764
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=4.2e-20 Score=114.18 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=71.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|..+.++.. ..++.+++||||+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~---------------------------~~~g~~~g~afV~f~~ 66 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---------------------------NEKGMPTGEAMVAFES 66 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE---------------------------CTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe---------------------------CCCCCEeeEEEEEECC
Confidence 3589999999999999999999999999988766632 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
+++|.+|++.|++. .++|+.|+|.++.+
T Consensus 67 ~~~a~~Ai~~l~g~--~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 67 RDEATAAVIDLNDR--PIGSRKVKLSGPSS 94 (95)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEECCC-
T ss_pred HHHHHHHHHHhCCC--eECCcEEEEEeccC
Confidence 99999999999998 89999999999864
No 124
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=124.81 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=88.1
Q ss_pred CceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEe---cCeEEEEECCHHHHHhhc----C--Cc--------------
Q psy1185 3 KVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITVT----G--LS-------------- 58 (131)
Q Consensus 3 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~---~~~~fv~~~~~~~a~~~~----g--~~-------------- 58 (131)
..++|||+|||. ++++++|+++|++||.|.+++++ +|||||+|.+.++|+.+. | +.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 99999999999999999999998 799999999999999811 0 00
Q ss_pred --------------------------------------eeEEec--CCC--------------C--------CCCCcceE
Q psy1185 59 --------------------------------------QVIIYS--SPD--------------D--------NKKNRGFC 76 (131)
Q Consensus 59 --------------------------------------~~~~~~--~~~--------------~--------~~~~~~~~ 76 (131)
...+++ .+. . ....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 111111 110 0 02257999
Q ss_pred EEEeCCHHhHHHHHHHHhCCcceec-CcEEEEEecCCC
Q psy1185 77 FLEYDSHKSASLAKKRLATGRLKVW-GCDIIVDWADPQ 113 (131)
Q Consensus 77 fv~f~~~~~a~~a~~~l~~~~~~~~-g~~l~v~~a~~~ 113 (131)
||+|.+.++|.+|+..|+|. .++ |+.|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSS--CCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCC--ccCCCCeEEEEeeccc
Confidence 99999999999999999998 778 999999999875
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=3.2e-19 Score=111.12 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=69.4
Q ss_pred CceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------------------------------~g~afV~f~ 65 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------------------------------NAFGFIQFD 65 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------------------------------SSEEEEEES
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------------------CCEEEEEEC
Confidence 478999999998 99999999999999999998764 689999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+.++|.+|+..++|. .++|+.|+|+|++++.
T Consensus 66 ~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 66 NPQSVRDAIEXESQE--MNFGKKLILEVSSSNA 96 (97)
T ss_dssp SHHHHHHHHHHHTTS--EETTEECEEEECCCCC
T ss_pred CHHHHHHHHHHcCCC--EECCEEEEEEecCCCC
Confidence 999999999999998 8999999999998754
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.7e-19 Score=115.24 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=73.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.+++ .+.++|||||+|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------------------------------~~~~~g~afV~f~~ 56 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN------------------------------TPETRGTAYVVYED 56 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC------------------------------STTTTTCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------------------------------CCCCCcEEEEEECC
Confidence 367999999999999999999999999999999874 35569999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|+..|+|. .++|+.|.|.|+.++.
T Consensus 57 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 57 IFDAKNAVDHLSGF--NVSNRYLVVLYYNANR 86 (115)
T ss_dssp HHHHHHHHHHHTTC--BSSSCBCEEEECCHHH
T ss_pred HHHHHHHHHHcCCC--EECCeEEEEEEecCCh
Confidence 99999999999998 8899999999998643
No 127
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=112.62 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=70.5
Q ss_pred CceEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------------------------------~g~afV~f~ 53 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------------------------------NAFGFIQFD 53 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------------------------------TTEEEEEES
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------------------CCEEEEEEC
Confidence 478999999998 99999999999999999999875 688999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCCh
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~~ 118 (131)
+.++|.+|+..|++. .++|+.|.|.|+.++..+..
T Consensus 54 ~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 54 NPQSVRDAIECESQE--MNFGKKLILEVSSSNARPQF 88 (96)
T ss_dssp CHHHHHHHHHHHTCS--SCBTTTBCEEEEECCCC---
T ss_pred CHHHHHHHHHHcCCC--eeCCcEEEEEEcCcCCCCCC
Confidence 999999999999998 88999999999987766543
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=113.43 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
++|||+|||.++++++|+++|++||.|.++.+++ . +++||||+|.+.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-------------------------------~-~~g~afV~f~~~~ 48 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR-------------------------------N-PPGFAFVEFEDPR 48 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES-------------------------------S-SSSEEEEECSSHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-------------------------------C-CCCEEEEEECCHH
Confidence 5899999999999999999999999999998873 1 6899999999999
Q ss_pred hHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 85 SASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 85 ~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
+|.+|+..|++. .++|+.|.|+|+.++...
T Consensus 49 ~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 49 DAEDAVRGLDGK--VICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HHHHHHHHHHHS--CSSSCCCEEEESSSCCCS
T ss_pred HHHHHHHHHCCC--eECCcEEEEEEccCCCCc
Confidence 999999999998 889999999999876643
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=111.68 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=66.5
Q ss_pred ceEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 4 VKVLYVRNLTQYC------TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 4 ~~~l~v~nLp~~~------t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.++|||+|||..+ ++++|+++|++||.|.++.+++ .+|.++||||
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-----------------------------~~g~~~g~af 51 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----------------------------EDGKTKGYIF 51 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-----------------------------BTTBCCCEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-----------------------------CCCcEeEEEE
Confidence 4789999999999 7799999999999999998763 3788999999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCc-EEEE
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGC-DIIV 107 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~-~l~v 107 (131)
|+|.+.++|.+|+..|+|. .++|+ .|+|
T Consensus 52 V~f~~~~~A~~Ai~~lng~--~~~g~~~l~V 80 (81)
T 2krb_A 52 LEYASPAHAVDAVKNADGY--KLDKQHTFRV 80 (81)
T ss_dssp EEESSHHHHHHHHTTSSSC--CCSSSSCCCC
T ss_pred EEECCHHHHHHHHHHhcCc--ccCCceeEEe
Confidence 9999999999999999998 88998 7776
No 130
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=115.06 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=69.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|..+.+++ +++||||+|.+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---------------------------------~~g~afV~f~~~ 56 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---------------------------------GGITAIVEFLEP 56 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---------------------------------SSSCEEEEESCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------------------------------CCCEEEEEeCCH
Confidence 57999999999999999999999999999988763 478999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
++|.+|+..|||. .++|+.|.|.||....
T Consensus 57 ~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 57 LEARKAFRHLAYS--KFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHHHHHTTC--BSSSSBCEEEEEETTT
T ss_pred HHHHHHHHHhCCC--EECCeEEEEEECCCCc
Confidence 9999999999998 8899999999997543
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=111.78 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=70.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------------------------------~~g~afV~f~ 52 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------------------------------KSGYAFVDYP 52 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------------------------------ETTEEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------------------------------CCCEEEEEEC
Confidence 4689999999999999999999999999 5555443 3799999999
Q ss_pred CHHhHHHHHHHHhC-CcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLAT-GRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~-~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|.+|+..|++ . .++|+.|.|+|+.++.++.
T Consensus 53 ~~~~A~~A~~~l~g~~--~~~g~~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 53 DQNWAIRAIETLSGKV--ELHGKIMEVDYSVSKKLRS 87 (93)
T ss_dssp CHHHHHHHHHHHTTTC--EETTEECEEEECCCCCCCC
T ss_pred CHHHHHHHHHHccCCe--eECCEEEEEEEccCccccC
Confidence 99999999999999 7 8999999999999877654
No 132
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=2.6e-19 Score=113.67 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=70.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------------------------------kg~afV~f~~ 74 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------------------------------NGFAFVEFEE 74 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------------------------------TTEEEEECSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------------------------------CCEEEEEECC
Confidence 36899999999999999999999999999999875 6899999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|+..|+|. .++|+.|.|.|++++..+
T Consensus 75 ~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 75 AESAAKAIEEVHGK--SFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEESCSCCC--
T ss_pred HHHHHHHHHHcCCC--EECCeEEEEEEecCCCCC
Confidence 99999999999998 889999999999987654
No 133
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=118.24 Aligned_cols=79 Identities=28% Similarity=0.516 Sum_probs=72.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++++++. ..++.++|||||+|.+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---------------------------YETEKHRGFAFVEFEL 114 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC---------------------------TTTCCCCSEEEEEESC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec---------------------------CCCCCcCcEEEEEECC
Confidence 4689999999999999999999999999999988753 3467889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
.++|.+|++.|++. .++|+.|+|+||
T Consensus 115 ~~~a~~A~~~l~g~--~~~g~~l~v~~A 140 (140)
T 2ku7_A 115 AEDAAAAIDNMNES--ELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHHHHSTEE--EETTEEEEEEC-
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEeC
Confidence 99999999999997 899999999986
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=115.86 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCee----EEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVE----RVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~----~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
.++|||+|||.++++++|+++|++||.|. .+++. ++.++|||||+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------------------------------~g~~~g~afV~ 73 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------------------------------TGRMRGQAFIT 73 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------------------------------CSSSCSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------------------------------CCccceEEEEE
Confidence 57999999999999999999999999984 44443 56789999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
|.+.++|.+|+..|++. .++|+.|.|.||.++..+.
T Consensus 74 f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 74 FPNKEIAWQALHLVNGY--KLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp CSSHHHHHHHHHHSTTC--BCSSCBCEEEECCCCSCCC
T ss_pred ECCHHHHHHHHHHhCCC--EeCCcEEEEEEccCCCCCC
Confidence 99999999999999998 8899999999999877654
No 135
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=114.46 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=73.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.+++++++ . ++.++|||||+|.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---------------------------~-~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD---------------------------S-SGTSRGVGFARMES 75 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC---------------------------S-SSCEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC---------------------------C-CCCcceEEEEEECC
Confidence 3579999999999999999999999999999998854 2 67889999999999
Q ss_pred HHhHHHHHHHHhCCccee--------cCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKV--------WGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~--------~g~~l~v~~a~~~~ 114 (131)
.++|.+|+..|+|. .+ .++.|.|.||.|+.
T Consensus 76 ~~~a~~A~~~l~g~--~~~~~~~~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 76 TEKCEAVIGHFNGK--FIKTPPGVSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp HHHHHHHHHHHBTC--CCCCCTTSCCCSSCBEEEECCCSC
T ss_pred HHHHHHHHHHhCCC--EEcCCccccCCCCceeEEccCCCC
Confidence 99999999999998 56 58889999999753
No 136
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.80 E-value=5e-19 Score=108.67 Aligned_cols=76 Identities=29% Similarity=0.401 Sum_probs=64.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||||||+++++++|+++|++||.|.++++++ .++|||||+|.+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------------------------------~srGfaFV~F~~~ 58 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------------------------------PFRAFAFVTFADD 58 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------------------------------SCCSEEEEEESCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------------------------------CCCCEEEEEECCH
Confidence 57999999999999999999999999999998873 2689999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
++|. .+++..+.+.|+.|.|.+|.++.+
T Consensus 59 ~~A~----~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 59 KVAQ----SLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp HHHH----HHTTCEEEETTEEEEEEECC----
T ss_pred HHHH----HHcCCCcccCCEEEEEEEcCCCCc
Confidence 9987 367776677799999999998654
No 137
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-19 Score=111.02 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=71.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|..+.+++ . +||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------------~----g~afV~f~~ 59 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------------D----GTGVVEFVR 59 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------------T----TEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------------C----CEEEEEECC
Confidence 467999999999999999999999999999998873 1 899999999
Q ss_pred HHhHHHHHHHHhCCcceecC-----cEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWG-----CDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g-----~~l~v~~a~~~~~~ 116 (131)
.++|.+|++.|++. .++| +.|.|.+|.++...
T Consensus 60 ~~~a~~Ai~~l~g~--~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 60 KEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHHHHHHHHHSSSE--EEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHHHHHHHHHCcC--CccCCcCcceEEEEEeCCCCCCC
Confidence 99999999999998 8899 99999999987654
No 138
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=111.11 Aligned_cols=82 Identities=29% Similarity=0.466 Sum_probs=72.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.| ++++ ..++.+++||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~----------------------------~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ----------------------------NQNGKSKGYAFIEFAS 62 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB----------------------------CSSSCBCSEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE----------------------------CCCCCEeeEEEEEECC
Confidence 36899999999999999999999999977 3442 1367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++..+.
T Consensus 63 ~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 63 FEDAKEALNSCNKR--EIEGRAIRLELQGPRGSPN 95 (101)
T ss_dssp HHHHHHHHHHTSSE--EETTEEEEEEECSSCCCCC
T ss_pred HHHHHHHHHHhCCC--EeCCeEEEEEEcCCCCCCC
Confidence 99999999999997 8999999999999876543
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-20 Score=116.30 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=72.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.. .++.. ..++.++|||||+|.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~---------------------------~~~g~~~g~afV~f~~ 67 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD---------------------------VRTGTNRKFGYVDFES 67 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE---------------------------EEEETTTTEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec---------------------------CCCCCcCcEEEEEECC
Confidence 4679999999999999999999999998877 33321 1256789999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|++ +++. .++|+.|.|.||.++.++
T Consensus 68 ~~~a~~A~~-l~g~--~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 68 AEDLEKALE-LTGL--KVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp HHHHHHHHH-GGGC--CBTTBCCEEECCSCCCCS
T ss_pred HHHHHHHHh-cCCc--EECCcEEEEEEcCCCCCC
Confidence 999999998 9998 889999999999987754
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.8e-19 Score=118.59 Aligned_cols=78 Identities=26% Similarity=0.466 Sum_probs=72.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------------------------------~~g~afV~f~~ 119 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------------------------------PPGFAFVEFED 119 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------------------------------SCSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------------------------------CCcEEEEEECC
Confidence 3589999999999999999999999999999988732 58999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|+..|+|. .++|+.|+|+|+.++.
T Consensus 120 ~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 120 PRDAADAVRELDGR--TLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHHSSS--CSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCC--EECCeEEEEEEcCCCC
Confidence 99999999999998 8899999999998864
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=1.2e-19 Score=107.56 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHh
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKS 85 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~ 85 (131)
+|||+|||.++++++|+++|++||+|.++.+++. ..++.++|||||+|.+.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~~~~~~~g~afV~f~~~~~ 53 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD---------------------------NKTNKRRGFCFITFKEEEP 53 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS---------------------------CCCSSSCCCEEEECSSSHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCCcCCEEEEEECCHHH
Confidence 6899999999999999999999999999988754 3468889999999999999
Q ss_pred HHHHHHHHhCCcceecCcEEEEEec
Q psy1185 86 ASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 86 a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
|.+|+.. ++. .++|+.|.|++|
T Consensus 54 a~~Ai~~-~~~--~~~g~~l~v~~a 75 (75)
T 1iqt_A 54 VKKIMEK-KYH--NVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHTT-SSC--CBTTBCCCEEEC
T ss_pred HHHHHHh-CCC--eECCEEEEEEEC
Confidence 9999986 666 899999999886
No 142
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=5.7e-19 Score=119.50 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=70.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+..+|||+|||+.+++++|+++|++||.|.++.+.. ..++++|||+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------------------------------k~~rgfAFVeF~d 93 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------------------------------KNNQFQALLQYAD 93 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------------------------------SSSCEEEEEEESC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------------------------------CCCCCEEEEEECC
Confidence 457899999999999999999999999999998762 2357899999999
Q ss_pred HHhHHHHHHHHhCCcceec--CcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVW--GCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~--g~~l~v~~a~~~~ 114 (131)
.++|.+|++.|+|. .++ |+.|+|+||+++.
T Consensus 94 ~~~A~~Ai~~LnG~--~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 94 PVSAQHAKLSLDGQ--NIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHHHSTTB--CSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHHHHhCCC--EecCCCcEEEEEEecCCc
Confidence 99999999999998 664 4999999999764
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=114.94 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=72.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||+++++++|+++|++||.| ..+++++. .++.++|||||+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d----------------------------~~g~~~G~afV~F~ 65 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD----------------------------NNGQGLGQALVQFK 65 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC----------------------------TTSSCSSCEEEECS
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC----------------------------CCCCcceEEEEEEC
Confidence 36799999999999999999999999999 88888753 27889999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
+.++|.+|+.. ++. .++|+.|.|.||.++
T Consensus 66 ~~~~a~~Al~~-~~~--~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 66 NEDDARKSERL-HRK--KLNGREAFVHVVTLE 94 (114)
T ss_dssp SHHHHHHHGGG-CSE--EETTEEEEEEEECHH
T ss_pred CHHHHHHHHHh-CCC--ccCCeEEEEEECCHH
Confidence 99999999988 886 899999999999754
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=117.66 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEE--------EEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRG 74 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~--------~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 74 (131)
..++|||+|||+++++++|+++|++||.|..+ ++. .++.++|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~------------------------------~~g~~~g 93 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM------------------------------KEGRMKG 93 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE------------------------------EETTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec------------------------------cCCCccc
Confidence 35799999999999999999999999998774 222 2578899
Q ss_pred eEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 75 FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 75 ~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
||||+|.+.++|.+|+..|||. .++|+.|.|.||++..++.
T Consensus 94 ~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 94 QAFIGLPNEKAAAKALKEANGY--VLFGKPMVVQFARSARPKQ 134 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHTTB--EETTEECEEEECCCSCC--
T ss_pred EEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCCCcc
Confidence 9999999999999999999998 8999999999998876554
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=110.83 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=72.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||+++++++|+++|++||.|.. ++++.. .++.++|||||+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~----------------------------~~g~~~G~afV~F~ 65 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD----------------------------FQGRSTGEAFVQFA 65 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC----------------------------SSSCBCSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC----------------------------CCCCcceEEEEEEC
Confidence 4689999999999999999999999999987 766642 36888999999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+.++|.+|+.. ++. .++|+.|.|.++.++.
T Consensus 66 ~~~~a~~A~~~-~~~--~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 66 SQEIAEKALKK-HKE--RIGHRYIEIFKSSRAE 95 (104)
T ss_dssp SHHHHHHHHTT-TTC--CSSSSCCEEEEECTTT
T ss_pred CHHHHHHHHHh-Ccc--hhCCcEEEEEECCHHH
Confidence 99999999998 887 8999999999987654
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=9.9e-19 Score=110.94 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=69.7
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 4 VKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 4 ~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
.++|||+|||++ +++++|+++|++||.|.++.+. ++||||+|.+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------------------------------~g~afV~f~~ 71 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------------------------------KGYAFVQYSN 71 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------------------------------TTEEEEECSS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------------------------------CCEEEEEECC
Confidence 479999999999 9999999999999999998763 6899999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
.++|.+|++.|++. .++|+.|.|.|+.++.+.
T Consensus 72 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 72 ERHARAAVLGENGR--VLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp SHHHHHHHHHHTTC--EETTEECCEEESCCCCSC
T ss_pred HHHHHHHHHHcCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999998 899999999999865543
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=2.1e-18 Score=112.75 Aligned_cols=79 Identities=27% Similarity=0.432 Sum_probs=70.0
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcce-EEEEe
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGF-CFLEY 80 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~-~fv~f 80 (131)
|+.-.|||+|||+.+|+++|+++|++||.|.++.+... .+++ |||+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------------------------------~~gfqAFVef 73 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------------------------------NNQFQALLQY 73 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------------------------------TTEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------------------------------CCCcEEEEEE
Confidence 35568999999999999999999999999999987631 3577 99999
Q ss_pred CCHHhHHHHHHHHhCCcceecC--cEEEEEecCCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWG--CDIIVDWADPQE 114 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g--~~l~v~~a~~~~ 114 (131)
.+.++|..|++.|+|. .++| +.|+|+||+++.
T Consensus 74 ~~~~~A~~Ai~~LnG~--~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 74 ADPVSAQHAKLSLDGQ--NIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp SCHHHHHHHHHHHTTC--EEETTEEEEEEEECSCSS
T ss_pred CCHHHHHHHHHHcCCC--eecCCCcEEEEEecCCCc
Confidence 9999999999999999 7777 899999998764
No 148
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=109.19 Aligned_cols=83 Identities=33% Similarity=0.632 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|+.|+ .+.+++. ..++.+++||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~---------------------------~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD---------------------------RETGSSKGFGFVDFNS 63 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC---------------------------SSSCSEEEEEEEECSS
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec---------------------------CCCCCcCcEEEEEECC
Confidence 467999999999999999999999874 4555532 2367889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.||+++.++.
T Consensus 64 ~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 64 EEDAKAAKEAMEDG--EIDGNKVTLDWAKPKGEGG 96 (102)
T ss_dssp HHHHHHHHHHHTTC--EETTEECEEEECCCCCSSS
T ss_pred HHHHHHHHHHhCCC--eECCeEEEEEEecCCCCCC
Confidence 99999999999998 8999999999999887654
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=109.72 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=71.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|..+ . .++.++|||||+|.+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~------------------------------~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--S------------------------------QDGKSKGIAYIEFKSE 63 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E------------------------------ETTEEEEEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C------------------------------CCCCcceEEEEEECCH
Confidence 6799999999999999999999999987765 1 1577899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|+..+++. .++|+.|.|.|+.++...
T Consensus 64 ~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 64 ADAEKNLEEKQGA--EIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp HHHHHHHHHTTEE--EETTEEEEEEECSSSCCC
T ss_pred HHHHHHHHHhCCC--EECCeEEEEEEcCCCCCC
Confidence 9999999999997 899999999999887653
No 150
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=107.66 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=69.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEE-EecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~-i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
..++|||+|||+++++++|+++|++||.|.+++ ++.. ...+.|||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-------------------------------~~~~~afV~f~ 62 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-------------------------------SETAVVNVTYS 62 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-------------------------------SSSEEEEEEES
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-------------------------------CCCCEEEEEEC
Confidence 367999999999999999999999999999994 6632 12344999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
+.++|.+|+..|+|. .++|+.|.|.||.++.
T Consensus 63 ~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 63 SKDQARQALDKLNGF--QLENFTLKVAYIPDEM 93 (96)
T ss_dssp SHHHHHHHHHHHTTC--BCSSCBCEEEECCCCC
T ss_pred CHHHHHHHHHHhCCC--EECCcEEEEEEcCccc
Confidence 999999999999998 8899999999999874
No 151
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.6e-19 Score=126.66 Aligned_cols=82 Identities=27% Similarity=0.394 Sum_probs=74.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
..++|||+|||+++++++|+++|++|| .|.+++|++. ..++.++|||||+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d---------------------------~~tg~skGfaFV~f 119 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---------------------------RANGQSKGFALVGV 119 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC---------------------------TTTCCEEEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec---------------------------CCCCccceEEEEEE
Confidence 457899999999999999999999999 9999998854 34788999999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.+.++|.+|+..|++. .++|+.|.|.||.+.
T Consensus 120 ~~~~~a~~Ai~~lng~--~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 120 GSEASSKKLMDLLPKR--ELHGQNPVVTPVNKQ 150 (229)
T ss_dssp SCTTHHHHHHTTSTTS--CBTTBCCEEEECCHH
T ss_pred CCHHHHHHHHHHcCCC--eECCEEeEEEECCCC
Confidence 9999999999999998 899999999998753
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=5.4e-19 Score=110.59 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=72.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.++++++. . ++.++|||||+|.+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------------~-~g~~~g~afV~f~~~ 60 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD---------------------------R-TGVSKGYGFVSFYND 60 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC---------------------------T-TSCEEEEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC---------------------------C-CCCccceEEEEECCH
Confidence 579999999999999999999999999999998864 2 678899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|.+|+. ++. .++|+.|.|.++.++...
T Consensus 61 ~~a~~Ai~--~~~--~~~g~~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 61 VDVQKIVE--SQI--NFHGKKLKLGPAIRKQNL 89 (102)
T ss_dssp CCHHHHTT--CCC--EETTEECEEEEEEECC--
T ss_pred HHHHHHHh--CCC--eECCEEEEEEECCcCcch
Confidence 99999999 776 899999999999876654
No 153
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=6.6e-19 Score=113.37 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=71.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
..++|||+|||+++++++|+++|++||. |..+++++. ..|.++|||||+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~----------------------------~~g~~~G~afV~ 67 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT----------------------------REGRQSGEAFVE 67 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC----------------------------SSSCEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC----------------------------CCCCCCeEEEEE
Confidence 3578999999999999999999999999 889988753 247889999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
|.+.++|.+|+. +++. .++|+.|.|.++.+
T Consensus 68 F~~~~~a~~Al~-~~g~--~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 68 LESEDDVKLALK-KDRE--SMGHRYIEVFKSHR 97 (118)
T ss_dssp BSSHHHHHHHGG-GTTE--EETTEEEEEEEECH
T ss_pred ECCHHHHHHHHh-cCCC--eECCeEEEEEECCH
Confidence 999999999999 9987 89999999999863
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=105.71 Aligned_cols=78 Identities=27% Similarity=0.302 Sum_probs=70.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|| ++++++|+++|++||.|.++.+. .+++||||+|.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------------------------------~~~g~afV~f~~ 58 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------------------------------PPRNCAFVTYEK 58 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------------------------------TTTTEEEEEESS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------------------------------CCCCEEEEEECC
Confidence 3579999996 89999999999999999999875 358999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.|+.++....
T Consensus 59 ~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 59 MESADQAVAELNGT--QVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHHHHHHHHHTTTE--EETTEEEEEECCSSCCCCC
T ss_pred HHHHHHHHHHhCCC--eECCeEEEEEECCCCCCCC
Confidence 99999999999998 8899999999999877654
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=109.94 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.+ ++++++. .++.++|||||+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d----------------------------~~g~~~G~afV~F~~ 64 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIG----------------------------PDGRVTGEADVEFAT 64 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEES----------------------------SSSCEEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEEC----------------------------CCCCEeeEEEEEECC
Confidence 36799999999999999999999999954 8888753 278899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|+ .+++. .++|+.|.|.++.+...
T Consensus 65 ~~~a~~Al-~~~~~--~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 65 HEDAVAAM-AKDKA--NMQHRYVELFLNSTAGT 94 (102)
T ss_dssp SHHHHHHH-TTSSC--CSSSSCCEEEEECCCCC
T ss_pred HHHHHHHH-HhCCC--eECCcEEEEEECCCCCC
Confidence 99999999 47887 89999999999887654
No 156
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=4.5e-19 Score=116.99 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
..++|||+|||+++|+++|+++|++||. |.++++++. ..|.++|||||+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d----------------------------~~g~srG~aFV~ 94 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT----------------------------REGRQSGEAFVE 94 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC----------------------------SSSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC----------------------------CCCCCCeEEEEE
Confidence 3678999999999999999999999999 889988854 248889999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
|.+.++|.+|+. +++. .++|+.|.|.++.+
T Consensus 95 F~~~e~a~~Al~-~~g~--~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRE--SMGHRYIEVFKSHR 124 (136)
T ss_dssp CSSHHHHHHHHT-TTEE--ESSSSEEEEEECCH
T ss_pred ECCHHHHHHHHh-cCCC--EECCEEEEEEECCh
Confidence 999999999999 9997 89999999999863
No 157
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2e-20 Score=119.86 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=76.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRG 74 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 74 (131)
..++|||+|||.++++++|+++|++||.|.. +.+++. ..++.++|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---------------------------~~~g~~~g 58 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---------------------------RETGKLKG 58 (116)
Confidence 4689999999999999999999999999988 666642 23678899
Q ss_pred eEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 75 FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 75 ~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
||||+|.+.++|.+|+..|++. .++|+.|.|.||.++....
T Consensus 59 ~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 59 EATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFATRRADFN 99 (116)
Confidence 9999999999999999999998 8899999999999877654
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=6.5e-18 Score=109.73 Aligned_cols=78 Identities=26% Similarity=0.452 Sum_probs=68.4
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcce-EEEEe
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGF-CFLEY 80 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~-~fv~f 80 (131)
++...|||+|||+.+++++|+++|++||.|.++.+.. + .|+ |||+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--------------------------------~-~Gf~aFVef 69 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--------------------------------R-NGIQAMVEF 69 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--------------------------------S-SSEEEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--------------------------------C-CCCEEEEEE
Confidence 3455689999999999999999999999999998762 1 385 99999
Q ss_pred CCHHhHHHHHHHHhCCcceecC--cEEEEEecCCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWG--CDIIVDWADPQE 114 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g--~~l~v~~a~~~~ 114 (131)
.+.++|..|++.|+|. .++| +.|+|.||+++.
T Consensus 70 ~~~~~A~~A~~~LnG~--~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 70 ESVLCAQKAKAALNGA--DIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSHHHHHHHHHHHTTC--CCBTTBSEEEEECCSCSC
T ss_pred CCHHHHHHHHHHhCCC--EecCCCeEEEEEEecCCc
Confidence 9999999999999998 6666 689999999775
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=3e-18 Score=117.56 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=75.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||.++++++|+++|++||.|.++.++.. .++.++|||||+|.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d----------------------------~~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD----------------------------RSGRSLGTADVHFER 138 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC----------------------------TTSSCSCCEEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----------------------------CCCCEeeEEEEEeCC
Confidence 4689999999999999999999999999999998753 267889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|+..+++. .++|+.|.|.||.+...
T Consensus 139 ~~~A~~Ai~~lng~--~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 139 RADALKAMKQYKGV--PLDGRPMDIQLVASQID 169 (177)
T ss_dssp HHHHHHHHHHSTTC--BCSSSBCEEEEESSGGG
T ss_pred HHHHHHHHHHhCCC--EECCEEEEEEEecCCCC
Confidence 99999999999998 89999999999986543
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=2.2e-18 Score=105.28 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=69.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------------------------------~~~g~afV~f~~ 49 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------------------------------RNKRTAFVTLLN 49 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------------------------------GGGTEEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------------------------------CCCcEEEEEECC
Confidence 46799999999999999999999999 99998774 358999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.++|.+|++.+++. .++|+.|+|+||....
T Consensus 50 ~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 50 GEQAQNAIQMFHQY--SFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHHHHHHHTTE--EETTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCC--eECCcEEEEEEcCCCc
Confidence 99999999999998 8999999999997643
No 161
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=104.52 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=69.5
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
+..++|||+|||.++++++|+++|++||.|.++++++ .++|||||+|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------------------------------~~~g~afV~f~ 50 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------------------------------PFRAFAFVTFA 50 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------------------------------SCCSCCEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------------------------------CCCCEEEEEEC
Confidence 4578999999999999999999999999999998863 26899999999
Q ss_pred CHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
+.++|++ +++..+.+.|+.|.|.|+.++....
T Consensus 51 ~~~~a~~----~~~~~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 51 DDQIAQS----LCGEDLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp CHHHHHH----TTTCEEEETTEEEEEECCCCCCCCC
T ss_pred CHHHHHH----HhcCCceeCCEEEEEEecCCCCCCC
Confidence 9999875 4565667899999999999887654
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=105.37 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=68.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|.++ +.. ..++. ||||+|.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~----------------------------~~~g~---~afV~f~~ 54 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMD----------------------------KDKGV---FAIVEMGD 54 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EEC----------------------------SSSCC---EEEEEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEc----------------------------CCCCc---EEEEEECC
Confidence 46799999999999999999999999999987 331 11222 99999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+. +++. .++|+.|.|+++.++....
T Consensus 55 ~~~a~~ai~-l~g~--~~~g~~l~V~~a~~~~~~~ 86 (94)
T 2e5g_A 55 VGAREAVLS-QSQH--SLGGHRLRVRPREQKEFQS 86 (94)
T ss_dssp HHHHHHHHT-CSCC--EETTEECCCBCSCCSCCCC
T ss_pred HHHHHHHHh-cCCe--EECCEEEEEEECCcCCCCC
Confidence 999999999 9998 8999999999998766543
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=109.84 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=68.0
Q ss_pred ceEEEE--eCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYV--RNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v--~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.++||| ||||+++++++|+++|++||.|.++.++. .+|||||+|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------------------------------~rgfaFV~f~ 71 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------------------------------NKPYSFARYR 71 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------------------------------TCSCEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------------------------------CCCEEEEEEC
Confidence 568999 77999999999999999999999987652 3799999999
Q ss_pred CHHhHHHHHHHHhCCccee-----cCcEEEEEecCCCCC
Q psy1185 82 SHKSASLAKKRLATGRLKV-----WGCDIIVDWADPQEE 115 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~-----~g~~l~v~~a~~~~~ 115 (131)
+.++|.+|++.|||+ .+ .|+.|.|.|+...+.
T Consensus 72 ~~~~A~~Ai~~lnG~--~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 72 TTEESKRAYVTLNGK--EVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp SHHHHHHHHHHTTTC--EEECTTSCEEECEEEEESCCCC
T ss_pred CHHHHHHHHHHhCCC--EEccccCCCcEEEEEecccCcc
Confidence 999999999999998 55 588899999986554
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=112.28 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=71.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
..++|||+|||+++++++|+++|++||. |.++++++. . .|.++|||||+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~---------------------------~-~g~~~G~afV~ 61 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN---------------------------R-DGKRRGDALIE 61 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC---------------------------T-TSTTCSEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC---------------------------C-CCCEeeEEEEE
Confidence 4679999999999999999999999998 889988753 2 48899999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
|.+.++|.+|+. +++. .++|+.|.|.++.+
T Consensus 62 F~~~~~a~~Al~-~~~~--~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 62 MESEQDVQKALE-KHRM--YMGQRYVEVYEINN 91 (107)
T ss_dssp BSSHHHHHHHHT-TTTC--CSSSSCCCCEECCH
T ss_pred ECCHHHHHHHHH-hCcc--eeCCeEEEEEECCH
Confidence 999999999999 9997 89999999999875
No 165
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.76 E-value=2.3e-18 Score=123.07 Aligned_cols=81 Identities=22% Similarity=0.541 Sum_probs=69.4
Q ss_pred CCceEEEEeCCCCCC---------CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCC
Q psy1185 2 SKVKVLYVRNLTQYC---------TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKN 72 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~---------t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 72 (131)
...++|||||||..+ ++++|+++|++||+|.+++++. +
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------------------------------~ 178 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------------------------------S 178 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------------------------------G
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------------------------------C
Confidence 357899999999998 7999999999999999999874 3
Q ss_pred cceEEEEeCCHHhHHHHHHHHhCCccee------------cCcEEEEEecCCCCCCC
Q psy1185 73 RGFCFLEYDSHKSASLAKKRLATGRLKV------------WGCDIIVDWADPQEEPD 117 (131)
Q Consensus 73 ~~~~fv~f~~~~~a~~a~~~l~~~~~~~------------~g~~l~v~~a~~~~~~~ 117 (131)
+|||||+|.+.++|+.|++.|+|. .+ .|+.|.|.||.+.+.+.
T Consensus 179 kG~AFV~F~~~~~Ae~A~~am~g~--~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 179 KNCGFVKFKYQANAEFAKEAMSNQ--TLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp GTEEEEEESSHHHHHHHHHHHTTC--CCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCC--EEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 899999999999999999999998 55 89999999999876554
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-19 Score=115.25 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=70.1
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|..+.++.. ..+|.++|||||+|.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~---------------------------~~~g~~~G~afV~F~~ 76 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY---------------------------GPNGKATGEGFVEFRN 76 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE---------------------------CTTSSEEEEEEEEBSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE---------------------------CCCCCCCeEEEEEECC
Confidence 3579999999999999999999999999987433321 2368889999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.++|.+|+. +++. .++|+.|.|.+|.+
T Consensus 77 ~~~a~~Al~-~~g~--~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 77 EADYKAALC-RHKQ--YMGNRFIQVHPITK 103 (124)
T ss_dssp SHHHHHHHT-SCSB--CSTTSCBEEEEECH
T ss_pred HHHHHHHHH-hCCC--eECCcEEEEEECCH
Confidence 999999999 9997 89999999999975
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=8.8e-18 Score=117.59 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCceEEEEeCCC-CCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 2 SKVKVLYVRNLT-QYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 2 ~~~~~l~v~nLp-~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
...++|||+||| +.+++++|+++|++||.|.++++++. .+|||||+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------------------------~~g~afV~f 49 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------------------------KPGAAMVEM 49 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------------------------STTCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------------------------CCCEEEEEE
Confidence 356899999999 89999999999999999999998742 479999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
.+.++|.+|++.|||. .+.|+.|.|.|++.+
T Consensus 50 ~~~~~A~~Ai~~lng~--~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 50 ADGYAVDRAITHLNNN--FMFGQKMNVCVSKQP 80 (205)
T ss_dssp SSHHHHHHHHHHHTTC--EETTEECEEEECSCS
T ss_pred CCHHHHHHHHHHhCCC--EECCceEEEEEccCC
Confidence 9999999999999998 899999999999743
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=106.91 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++| .|.+++++++ ..|+++|+|||+|.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d----------------------------~~g~~~G~afV~F~~~ 66 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD----------------------------HVGRNNGNGLVKFLSP 66 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC----------------------------TTCCCCSEEEEECSSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC----------------------------CCCCCCeEEEEEECCH
Confidence 4689999999999999999999999 8999988853 2488899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
++|.+|+ .+++. .++|+.|.|..+.+
T Consensus 67 ~~a~~Al-~~~~~--~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 67 QDTFEAL-KRNRM--LMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHHHH-HTTTE--EETTEEEEEEECCH
T ss_pred HHHHHHH-hcCCC--eECCeEEEEEECCc
Confidence 9999999 68987 89999999988753
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=102.94 Aligned_cols=73 Identities=27% Similarity=0.406 Sum_probs=65.3
Q ss_pred eEEEEeCCCCCCCHHH----HHHHhhcc-CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 5 KVLYVRNLTQYCTEEK----LKEAFEQY-GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~----l~~~F~~~-G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
+.|||+|||+++++++ |+++|++| |+|.++ ++ |+|||.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------------------------------tg---G~AfV~ 52 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------------------------------TG---CSAILR 52 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------------------------------CT---TCEEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------------------------------ec---CEEEEE
Confidence 3499999999999988 55899999 599996 23 999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
|.+.++|.+|++.|+|. .+.|+.|+|+||+.+.+.
T Consensus 53 F~~~esA~~A~~~l~G~--~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 53 FINQDSAERAQKRMENE--DVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp ESSHHHHHHHHHHHTTC--CSSSSCCEEESSCCSCCC
T ss_pred ECCHHHHHHHHHHhcCC--ccCCceEEEEecCCCcce
Confidence 99999999999999998 899999999999987754
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.5e-17 Score=128.10 Aligned_cols=83 Identities=29% Similarity=0.493 Sum_probs=75.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||..+|+++|.++|++||.|..|.|+.. ..++.++|||||+|.+.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d---------------------------~~tg~~kG~aFV~F~~~ 154 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS---------------------------KRSGKPRGYAFIEYEHE 154 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc---------------------------CCCCCccceEEEeeccH
Confidence 479999999999999999999999999999998853 24688899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
++|.+|+..|||. .|+|+.|.|.||.+...
T Consensus 155 e~A~~Ai~~lng~--~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 155 RDMHSAYKHADGK--KIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHHHcCCC--EECCEEEEEEEeCCCCC
Confidence 9999999999998 89999999999987654
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.8e-17 Score=107.11 Aligned_cols=78 Identities=27% Similarity=0.302 Sum_probs=69.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|+ ++++++|+++|++||.|.++.+.+ ++|||||+|.+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------------------------------~kg~aFV~f~~ 82 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------------------------------PRNCAFVTYEK 82 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------------------------------TTTEEEEECSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------------------------------CCCEEEEEECC
Confidence 4679999996 699999999999999999998753 58999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~~ 117 (131)
.++|.+|+..|++. .++|+.|.|.||.++...+
T Consensus 83 ~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 83 MESADQAVAELNGT--QVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp HHHHHHHHHHHTTC--BCSSCBCEEEECCSSCC--
T ss_pred HHHHHHHHHHhCCC--EECCeEEEEEEeCCCCCCC
Confidence 99999999999998 8899999999999876554
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.1e-18 Score=114.12 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=71.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++|+++|+++|++|| +.++++++. ..+.++|||||+|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d----------------------------~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG----------------------------PDGRVTGEADVEFAT 95 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS----------------------------SSSCSSCCCEEECSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC----------------------------CCCCCceEEEEEeCC
Confidence 357899999999999999999999999 668888753 248899999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
.++|.+|+ .+++. .++|+.|.|.++.++..
T Consensus 96 ~e~A~~Al-~~~g~--~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 96 HEEAVAAM-SKDRA--NMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHHHHT-TCCSC--SSSSCCCCCEECCCSCC
T ss_pred HHHHHHHH-hhCCC--EECCEEEEEEECCCCCC
Confidence 99999999 78887 89999999999887654
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=2.8e-17 Score=99.72 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=65.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKK 71 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 71 (131)
..++|||+|||.++++++|+++|++| | .|.++.+.+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--------------------------------- 51 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--------------------------------- 51 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------------------------------
Confidence 46899999999999999999999999 8 899988763
Q ss_pred CcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEe
Q psy1185 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 72 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
++|||||+|.+.++|.+|+ .+++. .++|+.|+|+.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V~r 86 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDGI--IFQGQSLKIRR 86 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTTC--EETTEECEEEC
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCCC--EECCeEEEEeC
Confidence 3899999999999999999 99998 89999999874
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=105.86 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=63.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCC---CCCcceEEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN---KKNRGFCFLE 79 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~---~~~~~~~fv~ 79 (131)
..++|||+|||+++++++|+++|++||.|. +.++.. ..+ |.++|||||+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~---------------------------~~~~~~g~~~G~aFV~ 58 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK---------------------------AESKSYFPPKGYAFLL 58 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS---------------------------SSSCCCSCTTSEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec---------------------------CCCCCCCCcccEEEEE
Confidence 468999999999999999999999999999 766632 122 6889999999
Q ss_pred eCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 80 YDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 80 f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
|.+.++|.+|++.++ .++|+.+.+..+.
T Consensus 59 f~~~~~a~~Ai~~~~----~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 59 FQEESSVQALIDACL----EEDGKLYLCVSSP 86 (114)
T ss_dssp CSSHHHHHHHHHHSE----EETTEEEEEECCS
T ss_pred ECCHHHHHHHHHhhh----hcCCcEEEeccCC
Confidence 999999999999984 3566666665443
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-18 Score=110.36 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=69.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCe----eEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRV----ERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v----~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
..++|||+|||+++|+++|+++|++||.| ..++++.. .+|+++|||||
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d----------------------------~~gr~~G~aFV 73 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY----------------------------PDGRPTGDAFV 73 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC----------------------------TTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC----------------------------CCCCEeeEEEE
Confidence 35799999999999999999999999985 57877742 36889999999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
+|.+.++|.+|+.. ++. .++|+.|.|..+.
T Consensus 74 ~F~~~~~A~~Al~~-~~~--~l~gR~i~V~~a~ 103 (123)
T 2dha_A 74 LFACEEYAQNALRK-HKD--LLGKRYIELFRST 103 (123)
T ss_dssp CCSSHHHHHHHHTT-TTE--ESSSCEECCEEEC
T ss_pred EECCHHHHHHHHHh-CCC--eeCCeEEEEEECC
Confidence 99999999999997 776 8999999998875
No 176
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.1e-17 Score=107.32 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=68.8
Q ss_pred eEEEEeCC----CCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 5 KVLYVRNL----TQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 5 ~~l~v~nL----p~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
++|||||| |+.+++.+|+++|++||+|.++.++.+ +.+|.++|||||+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D---------------------------p~Tg~slGfgfVef 55 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND---------------------------PNSALPLHVYLIKY 55 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC---------------------------TTTCCEEEEEEEEC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec---------------------------CCCCceeeEEEEEE
Confidence 68999999 999999999999999999999998854 55899999999999
Q ss_pred CC----HHh----HHHHHH--HHhCCcceecCcEEEEEecCC
Q psy1185 81 DS----HKS----ASLAKK--RLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 81 ~~----~~~----a~~a~~--~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.+ +.. |.+|+. .++|. .++|+.|+|.+...
T Consensus 56 ~d~~g~~d~a~kAA~kAi~~~~lng~--~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 56 ASSDGKINDAAKAAFSAVRKHESSGC--FIMGFKFEVILNKH 95 (136)
T ss_dssp C------CCHHHHHHHHHHHTTTTCE--EETTEEEEEEECCT
T ss_pred CCCCCCcchHHHHHHHHHHHhhhcCC--eecCcEEEEEECcc
Confidence 96 333 788888 67887 99999999998664
No 177
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=2e-17 Score=105.85 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=65.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
..++|||+|||+++++++|+++|++||.|..+.++. .+||||+|.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~----------------------------------~g~afV~f~~ 60 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR----------------------------------DGTGVVEFVR 60 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT----------------------------------TSEEEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec----------------------------------CCEEEEEECC
Confidence 357899999999999999999999999999998862 1999999999
Q ss_pred HHhHHHHHHHHhCCcceecCcE-----EEEEecCCCCC
Q psy1185 83 HKSASLAKKRLATGRLKVWGCD-----IIVDWADPQEE 115 (131)
Q Consensus 83 ~~~a~~a~~~l~~~~~~~~g~~-----l~v~~a~~~~~ 115 (131)
.++|.+|++.|++. .++|+. +.|..+.++..
T Consensus 61 ~~~a~~Ai~~l~g~--~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 61 KEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp HHHHHHHHHHHTTC--BCCCTTSCCCBCEEEECC----
T ss_pred HHHHHHHHHHhCCC--EECCcEeeeEEEEeccCCCCCC
Confidence 99999999999998 889988 77777765443
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=2.1e-17 Score=107.59 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCee--EEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f 80 (131)
..++|||+|||+++++++|+++|++| .|. +++++++ ..|.++|||||+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d----------------------------~~GrsrGfaFV~F 91 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD----------------------------PEGKITGEAFVQF 91 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC----------------------------SSSSSCSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC----------------------------CCCCCceEEEEEE
Confidence 36789999999999999999999999 566 7887753 2488999999999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
.+.++|.+|+.. ++. .++|+.|.|.++.+
T Consensus 92 ~~~e~A~~Al~~-~~~--~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 92 ASQELAEKALGK-HKE--RIGHRYIEVFKSSQ 120 (126)
T ss_dssp SSTTHHHHHHTT-TTC--CBTTBCCCCEEECH
T ss_pred CCHHHHHHHHHH-CCC--EECCEEEEEEECCH
Confidence 999999999986 566 89999999998753
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=8.2e-17 Score=116.62 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=73.7
Q ss_pred CceEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
..++|||+|||.++++++|+ ++|++||.|.++++++ ++.++|||||
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------------------------------~~~~~g~afV 57 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------------------------------SLKMRGQAFV 57 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------------------------------CCCcceEEEE
Confidence 37899999999999999976 8999999999998873 5778999999
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~ 115 (131)
+|.+.++|.+|++.++|. .+.|+.|+|.|++.+..
T Consensus 58 ~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 58 IFKEVSSATNALRSMQGF--PFYDKPMRIQYAKTDSD 92 (282)
T ss_pred EECCHHHHHHHHHHhcCC--eeCCcEEEEEEeccCcc
Confidence 999999999999999998 89999999999976553
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=7.2e-17 Score=112.01 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=70.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||+++++++|+++|++||.|.++++++. .++.++|||||+|.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~----------------------------~~~~~kG~aFVeF~~~ 160 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT----------------------------LHKAFKGSIFVVFDSI 160 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC----------------------------TTCCEEEEEEEEESSH
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC----------------------------CCCCcccEEEEEECCH
Confidence 478999999999999999999999999999998853 2477899999999999
Q ss_pred HhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 84 KSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
++|.+|+..++. .++|+.|.|.|+..-.
T Consensus 161 e~A~~A~~~~~~---~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 161 ESAKKFVETPGQ---KYKETDLLILFKDDYF 188 (193)
T ss_dssp HHHHHHHHCTTC---EETTEECEEEETTTC-
T ss_pred HHHHHHHHhCCC---eECCEEEEEEEhHHHH
Confidence 999999987653 8999999999987543
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=9.5e-16 Score=96.79 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=69.5
Q ss_pred CceEEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 3 KVKVLYVRNLTQ-----YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 3 ~~~~l~v~nLp~-----~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.+++|+|.|+.. +-++++|++.|++||.|.++.+++. +..++.++|+||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~--------------------------~~~~~~~~G~~F 60 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--------------------------PGAPDDEAVRIF 60 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEEC--------------------------SSCCTTTSEEEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecC--------------------------CCCCCCCcEEEE
Confidence 367899999963 2378999999999999999998853 111357899999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
|+|.+.++|.+|+..|||+ .++|+.|.|.|+.+
T Consensus 61 V~f~~~~~A~~Ai~~lnG~--~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 61 LEFERVESAIKAVVDLNGR--YFGGRVVKACFYNL 93 (105)
T ss_dssp EEESSHHHHHHHHHHHTTC--EETTEECEEEECCH
T ss_pred EEECCHHHHHHHHHHHCCC--EECCcEEEEEEcCH
Confidence 9999999999999999999 89999999999864
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=4.6e-16 Score=112.64 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=68.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.++|||+|||.++++++|+++|++||.|.+++++.+ .+|+|||+|.+.
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~--------------------------------~~g~afV~f~~~ 254 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG--------------------------------RHDIAFVEFDNE 254 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC--------------------------------CCcEEEEEeCCH
Confidence 578999999999999999999999999999998743 268999999999
Q ss_pred HhHHHHHHHHhCCcceec-CcEEEEEecC
Q psy1185 84 KSASLAKKRLATGRLKVW-GCDIIVDWAD 111 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~-g~~l~v~~a~ 111 (131)
++|.+|+..|+|. .++ |+.|+|+||+
T Consensus 255 ~~A~~A~~~l~g~--~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 255 VQAGAARDALQGF--KITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHHcCCc--EeCCCCEEEEEEec
Confidence 9999999999998 888 9999999986
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=96.58 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=69.2
Q ss_pred CceEEEEeCCCCCCC-----------HHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCC
Q psy1185 3 KVKVLYVRNLTQYCT-----------EEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKK 71 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t-----------~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 71 (131)
..++|+|.||..... +++|+++|++||.|.++.+. ...
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-------------------------------~~~ 62 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-------------------------------DRH 62 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-------------------------------TTC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-------------------------------cCC
Confidence 367899999944432 58999999999999999664 234
Q ss_pred CcceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCCCC
Q psy1185 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 72 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++|||||+|.+.++|.+|+..|+|. .++|+.|.|.|+.++...
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGR--WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTC--EETTEECEEEECCSCCCS
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEeCCCCCc
Confidence 7999999999999999999999998 899999999999886543
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2e-15 Score=105.54 Aligned_cols=76 Identities=21% Similarity=0.142 Sum_probs=65.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCe--eEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRV--ERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v--~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.++|||+|||+++++++|+++|++||.| .+++++.. .+.++|+|||+|.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-----------------------------~~~~~g~gfV~f~ 173 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-----------------------------KSERSSSGLLEWD 173 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-----------------------------CSSSSEEEEEECS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-----------------------------CCCCceEEEEEeC
Confidence 4689999999999999999999999999 88887742 3556799999999
Q ss_pred CHHhHHHHHHHHhCCcceecCc----EEEEEec
Q psy1185 82 SHKSASLAKKRLATGRLKVWGC----DIIVDWA 110 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~~~g~----~l~v~~a 110 (131)
+.++|.+|+..|||. .+.|. .+.|.||
T Consensus 174 ~~~~A~~Ai~~lng~--~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 174 SKSDALETLGFLNHY--QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SHHHHHHHHHHHTTC--EECCSSSSSCEECEEE
T ss_pred CHHHHHHHHHHhCCC--CccCCCCCcceEEEec
Confidence 999999999999998 77766 4777765
No 185
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1.4e-15 Score=95.82 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=60.6
Q ss_pred eCCCCCCCHHHHHHHh------------hccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 10 RNLTQYCTEEKLKEAF------------EQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 10 ~nLp~~~t~~~l~~~F------------~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.|||+.+++++|++.| ++||.|.++.++++ ..+.++||||
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~----------------------------~~~~~~G~~f 72 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN----------------------------LGDHLVGNVY 72 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS----------------------------SSSSSEEEEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC----------------------------CCCCccEEEE
Confidence 4555666777666666 99999999998854 2467899999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
|+|.+.++|.+|+..|||. .++|+.|.|.|+
T Consensus 73 V~f~~~~~A~~A~~~lng~--~~~Gr~i~v~~s 103 (104)
T 1jmt_A 73 VKFRREEDAEKAVIDLNNR--WFNGQPIHAELS 103 (104)
T ss_dssp EEESCHHHHHHHHHHHTTC--EETTEECCEEEC
T ss_pred EEECCHHHHHHHHHHHCCC--EECCEEEEEEEc
Confidence 9999999999999999998 899999999986
No 186
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=5e-14 Score=88.81 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=66.9
Q ss_pred ceEEEEeCC--CCCCC--------HHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCc
Q psy1185 4 VKVLYVRNL--TQYCT--------EEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNR 73 (131)
Q Consensus 4 ~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 73 (131)
++.|.+.|+ |.+.. +++|++.|++||.|.++++++.. ...++.++
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~-------------------------~~~~~~~~ 59 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV-------------------------DGVEVPGC 59 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB-------------------------TTBCCTTT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC-------------------------CCCCcCCc
Confidence 567888888 44443 36899999999999999988530 00123578
Q ss_pred ceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCC
Q psy1185 74 GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 74 ~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~ 112 (131)
|++||+|.+.++|.+|+..|||+ .++|+.|+|.|+..
T Consensus 60 G~~fV~f~~~~~A~~Ai~~lnG~--~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 60 GKIFVEFTSVFDCQKAMQGLTGR--KFANRVVVTKYCDP 96 (105)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECH
T ss_pred EEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEEeCH
Confidence 99999999999999999999999 89999999999763
No 187
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-13 Score=85.49 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHH
Q psy1185 14 QYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93 (131)
Q Consensus 14 ~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 93 (131)
.++++++|+++|++||.|.+++++ +.++|||||+|.++++|..|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------------------------------~~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------------------------------SKKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------------------------------SSSSSEEEEEESCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------------------------------cCCCCEEEEEECCHHHHHHHHHhc
Confidence 568999999999999999999886 256899999999999999999985
Q ss_pred hCCcceecCcEEEEEecCCCCCC
Q psy1185 94 ATGRLKVWGCDIIVDWADPQEEP 116 (131)
Q Consensus 94 ~~~~~~~~g~~l~v~~a~~~~~~ 116 (131)
++ +.|+.|+|.|+.++...
T Consensus 75 ~~----~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 75 VG----LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CB----CSSSBCEEECSSCCCCC
T ss_pred CC----CCCCeEEEEEccCCCCC
Confidence 54 57999999999877644
No 188
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=7.7e-14 Score=104.35 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=62.8
Q ss_pred ceEEEEeC--CCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 4 VKVLYVRN--LTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 4 ~~~l~v~n--Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
.++||||| |+.++|+++|+++|++||.|.++.+.. +||||||+|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------------------------------~kgfaFV~f~ 64 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------------------------------NKPYSFARYR 64 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------------------------------TCSEEEEEES
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------------------------------CCCEEEEEEC
Confidence 57999999 588999999999999999999986642 4799999999
Q ss_pred CHHhHHHHHHHHhCCcce-ecCc--EEEEEecC
Q psy1185 82 SHKSASLAKKRLATGRLK-VWGC--DIIVDWAD 111 (131)
Q Consensus 82 ~~~~a~~a~~~l~~~~~~-~~g~--~l~v~~a~ 111 (131)
+.++|++|++.|||+++. ..|+ .+.+.|++
T Consensus 65 ~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 65 TTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp SHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 999999999999998541 1245 47778874
No 189
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1.3e-13 Score=88.60 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=67.8
Q ss_pred CceEEEEeCCC--CC---CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 3 KVKVLYVRNLT--QY---CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 3 ~~~~l~v~nLp--~~---~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
.+++|++.|+- .+ -.+++|++.|++||.|.++.+++.. .....++.++|++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~-----------------------~~~~~~~~~~G~~F 75 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEK-----------------------QGEEEDAEIIVKIF 75 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEE-----------------------ESSSTTCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecC-----------------------CCcccCCcceEEEE
Confidence 36789999983 22 2368999999999999999988531 00011345679999
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
|+|.+.++|.+|+..|||+ .++|+.|.|.|+.
T Consensus 76 V~F~~~e~A~~Ai~~LnGr--~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 76 VEFSIASETHKAIQALNGR--WFAGRKVVAEVYD 107 (118)
T ss_dssp EEESSHHHHHHHHHHHTTC--EETTEECEEEEEC
T ss_pred EEECCHHHHHHHHHHHCCC--EECCcEEEEEEcC
Confidence 9999999999999999999 8999999999975
No 190
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.8e-12 Score=83.52 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=70.3
Q ss_pred CCCceEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEE
Q psy1185 1 MSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLE 79 (131)
Q Consensus 1 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~ 79 (131)
|.+.+.|||+|||.+ +++++|+++|++||+|..|.+.++ ...|||.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---------------------------------~~tgfVr 61 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---------------------------------AKEGIIL 61 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---------------------------------CSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---------------------------------CCEEEEE
Confidence 456788999999999 999999999999999999998865 3369999
Q ss_pred eCC-HHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 80 YDS-HKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 80 f~~-~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
|.+ ..+|..|++.++...+.+.|..++++......
T Consensus 62 f~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Gee 97 (121)
T 1owx_A 62 FKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEV 97 (121)
T ss_dssp ESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHH
T ss_pred ECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHH
Confidence 999 89999999999877789999888887765433
No 191
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.6e-12 Score=83.04 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred ceEEEEeCCCCCC----------CHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCc
Q psy1185 4 VKVLYVRNLTQYC----------TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNR 73 (131)
Q Consensus 4 ~~~l~v~nLp~~~----------t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 73 (131)
++.|.+.|+=..- .+++|++.|++||.|.++.+.+. .++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-------------------------------~~~ 55 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-------------------------------SAQ 55 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-------------------------------CTT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-------------------------------CCc
Confidence 4567777772211 12578999999999999988743 258
Q ss_pred ceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 74 GFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 74 ~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
|++||+|.+.++|.+|++.|||. .++|+.|.|.|+.
T Consensus 56 G~~fV~f~~~e~A~~Ai~~lnG~--~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 56 GNVYVKCPSIAAAIAAVNALHGR--WFAGKMITAAYVP 91 (114)
T ss_dssp CCEEEECSSHHHHHHHHHHHTTC--EETTEECEEEEEC
T ss_pred EEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEEc
Confidence 99999999999999999999999 8999999999985
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=2e-11 Score=83.33 Aligned_cols=52 Identities=31% Similarity=0.668 Sum_probs=48.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|..+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 4799999999999999999999999999999987 679999999999999855
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=2.1e-11 Score=85.12 Aligned_cols=52 Identities=29% Similarity=0.585 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe------cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~------~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|+.+.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 5689999999999999999999999999999987 789999999999999954
No 194
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.24 E-value=2.5e-11 Score=81.29 Aligned_cols=53 Identities=26% Similarity=0.575 Sum_probs=48.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHhhc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~~~ 55 (131)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 35789999999999999999999999999999987 579999999999999954
No 195
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=4.5e-11 Score=79.31 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=48.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~ 55 (131)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 36789999999999999999999999999999987 579999999999999954
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=2e-11 Score=81.37 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=49.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhcC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~g 56 (131)
.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..+..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 5689999999999999999999999999999987 4799999999999999654
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.19 E-value=6.7e-11 Score=80.87 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=48.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~ 54 (131)
..++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|..+
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A 172 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 172 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHH
Confidence 35899999999999999999999999999999987 67999999999999984
No 198
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=71.13 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=59.7
Q ss_pred ceEEEEeCCCC----CCCH----HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcce
Q psy1185 4 VKVLYVRNLTQ----YCTE----EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGF 75 (131)
Q Consensus 4 ~~~l~v~nLp~----~~t~----~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 75 (131)
..||+|.-.|. ...+ .+|.+.|++||.|..++++.+ .
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------------------------------~ 51 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------------------------------K 51 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------------------------------S
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------------------------------C
Confidence 35777877662 3333 679999999999999998843 3
Q ss_pred EEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCC
Q psy1185 76 CFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113 (131)
Q Consensus 76 ~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~ 113 (131)
+||+|.+.++|.+|++ |+|. .++|+.|+|+++.+.
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~--~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGK--ELLNRTITIALKSPS 86 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTC--EETTEEEEEEECCCS
T ss_pred EEEEECChHHHHHHHh-cCCe--EeCCeEEEEEeCCCC
Confidence 8999999999999998 9998 999999999998764
No 199
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.18 E-value=7e-11 Score=81.78 Aligned_cols=51 Identities=24% Similarity=0.561 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~ 54 (131)
.++|||+|||.++++++|+++|++||.|..++++ +|||||+|.+.++|..+
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 5799999999999999999999999999999987 57999999999999984
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=4.5e-11 Score=80.03 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=48.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|..+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 4789999999999999999999999999999987 579999999999999844
No 201
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.17 E-value=9.3e-11 Score=78.10 Aligned_cols=53 Identities=32% Similarity=0.555 Sum_probs=48.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~ 55 (131)
..++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|..+.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 35789999999999999999999999999999887 479999999999999954
No 202
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.16 E-value=1.1e-10 Score=77.49 Aligned_cols=52 Identities=31% Similarity=0.545 Sum_probs=48.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe--------cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~--------~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||.++++++|+++|++||.|..++++ +|||||+|.+.++|..+.
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 5789999999999999999999999999999886 589999999999999954
No 203
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=2.2e-10 Score=78.53 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=48.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEe---cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI---KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~i~---~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||.++++++|+++|++|| .|.+++++ +|||||+|.+.++|..+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 175 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHH
Confidence 67899999999999999999999999 99999995 799999999999999954
No 204
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.09 E-value=3.3e-10 Score=79.78 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=48.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEe---cCeEEEEECCHHHHHhhc
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI---KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~i~---~~~~fv~~~~~~~a~~~~ 55 (131)
.++|||+|||.++++++|+++|++|| .|..++++ +|||||+|.+.++|..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHH
Confidence 57899999999999999999999999 99999994 799999999999999953
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.08 E-value=3e-10 Score=81.52 Aligned_cols=51 Identities=31% Similarity=0.485 Sum_probs=48.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe-------cCeEEEEECCHHHHHhh
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~-------~~~~fv~~~~~~~a~~~ 54 (131)
.++|||+|||..+++++|+++|++||.|.++.++ +|||||+|.+.++|..+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 5689999999999999999999999999999987 78999999999999994
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=1.1e-09 Score=76.83 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 16 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 16 ~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
-.+++|++.|++||.|.++.++++. .....++.++|++||+|.+.++|.+|+..|+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~-----------------------~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEK-----------------------QGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEE-----------------------CCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCC-----------------------CCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 4567899999999999999887431 11123568899999999999999999999999
Q ss_pred CcceecCcEEEEEecC
Q psy1185 96 GRLKVWGCDIIVDWAD 111 (131)
Q Consensus 96 ~~~~~~g~~l~v~~a~ 111 (131)
+ .++||.|.+.|+.
T Consensus 198 r--~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 198 R--WFAGRKVVAEVYD 211 (222)
T ss_dssp C--BSSSSBCEEEECC
T ss_pred c--eECCeEEEEEEcC
Confidence 9 8999999999975
No 207
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.00 E-value=5.6e-10 Score=74.97 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=46.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEE---ecCeEEEEECCHHHHHhhcC
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR---IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i---~~~~~fv~~~~~~~a~~~~g 56 (131)
.++|||+|||.++++++|+++|++||.|..+.. .+|||||+|.+.++|..+..
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHH
Confidence 579999999999999999999999998887711 17999999999999999543
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=7.1e-09 Score=63.52 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=58.3
Q ss_pred ceEEEEeCCCCC-----CCH----HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcc
Q psy1185 4 VKVLYVRNLTQY-----CTE----EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRG 74 (131)
Q Consensus 4 ~~~l~v~nLp~~-----~t~----~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 74 (131)
..||+|.-++.+ +.+ .+|.+.|++||.|..+++..+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----------------------------------- 59 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----------------------------------- 59 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------------------------------
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------------------------------
Confidence 458889888643 222 568899999999999998843
Q ss_pred eEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 75 FCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 75 ~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
-+||+|.+.++|.+|++ |+|. .++||.|+|++-.
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~--~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGM--KVKGRAVKISGPS 93 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGS--EETTEEEEEECCC
T ss_pred cEEEEEcChHHHHHHHh-cCCe--eeCCeEEEEeccC
Confidence 29999999999999998 9998 9999999999743
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.4e-06 Score=54.63 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=64.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQY-----GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
..++|-+-|||..+++..|+.+.+++ |.+..+.+... .+-|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---------------------------------H~GAi 66 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---------------------------------FNGAI 66 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---------------------------------TTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---------------------------------CCceE
Confidence 36889999999999999999999999 99999987732 56699
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEe
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDW 109 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~ 109 (131)
|+|.+...|-+|.-.|+|. .+.|++|++.-
T Consensus 67 vef~d~~~AgKasLaL~G~--ef~gr~Lr~gT 96 (117)
T 2l9w_A 67 IIFRDSKFAAKMLMILNGS--QFQGKVIRSGT 96 (117)
T ss_dssp EECSCHHHHHHHHHHHSSE--EETTEEEEEEC
T ss_pred EEEccchhhHHHHhhcCCe--eecCeEEEecC
Confidence 9999999999999999998 88999999864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=4.8e-05 Score=47.22 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=62.1
Q ss_pred ceEEEEeCCCCCC-CH----HHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEE
Q psy1185 4 VKVLYVRNLTQYC-TE----EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFL 78 (131)
Q Consensus 4 ~~~l~v~nLp~~~-t~----~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv 78 (131)
.++|+|.||+.++ .. ..++++|.+|+++......+. -.-..|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---------------------------------FRRirv 51 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---------------------------------FKRVRI 51 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---------------------------------TTEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---------------------------------ceEEEE
Confidence 4689999998864 22 467899999999888766543 234688
Q ss_pred EeCCHHhHHHHHHHHhCCcceecCcEEEEEecCCCC
Q psy1185 79 EYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114 (131)
Q Consensus 79 ~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~~~~ 114 (131)
.|.+.++|.+|...||+. .++|+.++|-|+.+-.
T Consensus 52 ~F~~~~~A~~AR~~Lh~~--~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 52 NFSNPLSAADARLRLHKT--EFLGKEMKLYFAQTLH 85 (104)
T ss_dssp ECSSTTHHHHHHHTSTTS--EETTEECEEECCCCSS
T ss_pred EeCChHHHHHHHHHhccc--eecCceeEEEecCCCC
Confidence 999999999999999998 8999999999998543
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.64 E-value=0.00061 Score=41.31 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=52.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHH
Q psy1185 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHK 84 (131)
Q Consensus 5 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~ 84 (131)
++|-|++||+..|++++.+.++....+.....+.|- ........+-|+|.|.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~-------------------------~s~~~~~~SRaYi~f~~~e 56 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND-------------------------TSLYPHMYARAYINFKNQE 56 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC-------------------------CSSTTCCCEEEEEEESSSH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc-------------------------cCCCCCcceEEEEEeCCHH
Confidence 689999999999999999999998876665555440 0001123466999999999
Q ss_pred hHHHHHHHHhCC
Q psy1185 85 SASLAKKRLATG 96 (131)
Q Consensus 85 ~a~~a~~~l~~~ 96 (131)
++..-.+.++|.
T Consensus 57 ~v~~f~~~~~g~ 68 (91)
T 1uw4_A 57 DIILFRDRFDGY 68 (91)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCCc
Confidence 999999999997
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.0011 Score=40.98 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=54.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEE
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQY-----GRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCF 77 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~f 77 (131)
-.++|.|.|||..++++.|.-+|++- |+|..+... .+-|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----------------------------------~~~Av 51 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----------------------------------GCGGV 51 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----------------------------------TTEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----------------------------------CCcEE
Confidence 35789999999999999999999982 578777543 26789
Q ss_pred EEeCCHHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 78 LEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 78 v~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
|+|.+.+.|++.+..-.. .+++..|.|.-.
T Consensus 52 ItF~d~~va~rVL~k~~H---~L~~~~LsV~P~ 81 (104)
T 2dhx_A 52 LTFREPADAERVLAQADH---ELHGAQLSLRPA 81 (104)
T ss_dssp EEESSHHHHHHHHTCSCC---BSSSSBCEEEEC
T ss_pred EEEcChHHHHHHhcCCcc---eecCeEEEEEcC
Confidence 999999998877665332 778888888543
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.0013 Score=40.32 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=44.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.+.+++ +.|..+...||.++|++||. ..+..+. -..|||.|.+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~Wid----------------------------------DTsAlvvf~~ 58 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID----------------------------------DTSAFVSLSQ 58 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEE----------------------------------TTEEEEECSC
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEc----------------------------------CCeEEEEecC
Confidence 4556677 99999999999999999983 3344442 3569999999
Q ss_pred HHhHHHHHHHHh
Q psy1185 83 HKSASLAKKRLA 94 (131)
Q Consensus 83 ~~~a~~a~~~l~ 94 (131)
++.|..|++.+.
T Consensus 59 ~~~a~~al~~i~ 70 (100)
T 1whv_A 59 PEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999999774
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00087 Score=41.14 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=45.3
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeC
Q psy1185 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYD 81 (131)
Q Consensus 2 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~ 81 (131)
++.+.+++ +.|..+...||..+|++|| -..+..+. -..|||.|.
T Consensus 4 ~R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid----------------------------------DTsAlvvf~ 47 (101)
T 3ctr_A 4 GSDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID----------------------------------DTSAFVSLS 47 (101)
T ss_dssp EEEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE----------------------------------TTEEEEEEE
T ss_pred CCCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc----------------------------------CCeEEEEec
Confidence 34566777 9999999999999999999 33444442 356999999
Q ss_pred CHHhHHHHHHHHh
Q psy1185 82 SHKSASLAKKRLA 94 (131)
Q Consensus 82 ~~~~a~~a~~~l~ 94 (131)
+++.|..|++.+.
T Consensus 48 ~~~~a~~al~~i~ 60 (101)
T 3ctr_A 48 QPEQVKIAVNTSK 60 (101)
T ss_dssp EECHHHHHHHHHT
T ss_pred CHHHHHHHHHhcc
Confidence 9999999998774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0039 Score=39.53 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=52.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
.+.|-|-+.|... .+.+.+.|++||.|.+.... ...++-.|.|.++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------------------------------~~~NWihI~Y~s~ 69 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------------------------------NTGNWMHIRYQSK 69 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------------------------------SSSSEEEEEESSH
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------------------------------CCCCeEEEEeCCH
Confidence 4567888999885 56677789999999987643 2368899999999
Q ss_pred HhHHHHHHHHhCCcceecC-cEEEEEe
Q psy1185 84 KSASLAKKRLATGRLKVWG-CDIIVDW 109 (131)
Q Consensus 84 ~~a~~a~~~l~~~~~~~~g-~~l~v~~ 109 (131)
.+|++||.. ||. .++| ..|-|..
T Consensus 70 ~~A~rAL~k-NG~--ii~g~~mIGV~p 93 (119)
T 1wwh_A 70 LQARKALSK-DGR--IFGESIMIGVKP 93 (119)
T ss_dssp HHHHHHHTT-TTC--EETTTEECEEEE
T ss_pred HHHHHHHHh-CCe--EecCCEEEEEEE
Confidence 999999887 665 6664 4555554
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.72 E-value=0.0012 Score=51.07 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=27.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
.++|||. .|..+++.+|.++|++||+|.++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~ 85 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFY 85 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 4789997 79999999999999999999998776
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.51 E-value=0.008 Score=36.71 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCH
Q psy1185 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSH 83 (131)
Q Consensus 4 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~ 83 (131)
+-+|-|+.||+.+|++++.+.++..-++.....+.| +.......-+-|+|.|.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G-------------------------~~s~~~~~~SRAYI~F~~~ 63 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAA-------------------------DLSLYPHLYSRAYINFRNP 63 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCC-------------------------CSSSCCSCCCCCEEEESCH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCC-------------------------ccCCCCCcceEEEEEeCCH
Confidence 457899999999999998877776544322222222 0000112235689999999
Q ss_pred HhHHHHHHHHhCC
Q psy1185 84 KSASLAKKRLATG 96 (131)
Q Consensus 84 ~~a~~a~~~l~~~ 96 (131)
++...-.+..+|.
T Consensus 64 edv~~F~~~f~g~ 76 (97)
T 2l08_A 64 DDILLFRDRFDGY 76 (97)
T ss_dssp HHHHHHHHHSTTE
T ss_pred HHHHHHHHHcCCc
Confidence 9999888888886
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.79 E-value=0.016 Score=37.31 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEE-EecCeEEEEECCHHHHHhhcCCceeEEecCCCCCC-CCcceEEEEe
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNK-KNRGFCFLEY 80 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~-i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~-~~~~~~fv~f 80 (131)
....|-|-+.|++.+ ..+.+.|++||.|.+-. ..++.. .. .+.. ....+.+. ...++..|.|
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~---~~---------~~~~---~~~k~yP~f~g~NWikItY 69 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQ---AM---------TVGL---QDRQFVPIFSGNSWTKITY 69 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC--------------------------CCCCCEETTEEEEEB
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccc---cc---------cccc---ccccccCccCCCcEEEEEc
Confidence 356677889988864 56667899999987732 111100 00 0000 00000111 2357889999
Q ss_pred CCHHhHHHHHHHHhCCcceecCcEEEEEec
Q psy1185 81 DSHKSASLAKKRLATGRLKVWGCDIIVDWA 110 (131)
Q Consensus 81 ~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a 110 (131)
.++.+|.+||.. ||. .++|..|-|..-
T Consensus 70 ds~~~A~rAL~~-NG~--ii~G~mIGV~Py 96 (132)
T 3p3d_A 70 DNPASAVDALLE-NGA--VFNGVLLGVIPY 96 (132)
T ss_dssp SSHHHHHHHHTT-TTC--EETTEECEEEEC
T ss_pred CCHHHHHHHHHh-CCe--EeCcEEEEEEEC
Confidence 999999999875 555 788887766553
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.05 E-value=0.01 Score=38.45 Aligned_cols=40 Identities=23% Similarity=0.063 Sum_probs=35.7
Q ss_pred CCCcceEEEEeCCHHhHHHHHHHH-hCCcceecCcEEEEEecCC
Q psy1185 70 KKNRGFCFLEYDSHKSASLAKKRL-ATGRLKVWGCDIIVDWADP 112 (131)
Q Consensus 70 ~~~~~~~fv~f~~~~~a~~a~~~l-~~~~~~~~g~~l~v~~a~~ 112 (131)
...+|+++++|.+.+.|++|+..+ +|. .++| .+.+.++.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccC
Confidence 355899999999999999999999 887 8899 999999875
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.00 E-value=0.029 Score=36.39 Aligned_cols=26 Identities=23% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 70 KKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 70 ~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
..++|||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 35789999999999999999988874
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.40 E-value=0.5 Score=36.89 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCC
Q psy1185 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDS 82 (131)
Q Consensus 3 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~ 82 (131)
+.+.++++ +|..+...+|.++|+.||. .+++.+ ....|||.+.+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi----------------------------------ddt~a~V~~~~ 482 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI----------------------------------DDTSAFVSLSQ 482 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC----------------------------------SSSEEEEECSC
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE----------------------------------cCCeEEEEECC
Confidence 45667776 8899999999999999994 344443 24669999999
Q ss_pred HHhHHHHHHHHhCC
Q psy1185 83 HKSASLAKKRLATG 96 (131)
Q Consensus 83 ~~~a~~a~~~l~~~ 96 (131)
++.|..+++.+...
T Consensus 483 ~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 483 PEQVQIAVNTSKYA 496 (507)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988643
No 222
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.36 E-value=0.047 Score=32.29 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai 61 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWM 61 (91)
T ss_dssp CSSEEEEECSSHHHHHHHH
T ss_pred cCceEEEEecCHHHHHHHH
Confidence 4899999999999999853
No 223
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.26 E-value=0.056 Score=31.84 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=18.0
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+.|
T Consensus 47 srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHcC
Confidence 68999999999999998665
No 224
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.00 E-value=0.069 Score=32.01 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.0
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.++++|+.+.
T Consensus 43 kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQ 60 (89)
T ss_dssp TTEEEEEESSHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHH
Confidence 069999999999999843
No 225
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.78 E-value=0.13 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 57 ~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 57 PKGLAYVEYENESQASQAV 75 (100)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred EEeEEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 226
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.66 E-value=0.054 Score=32.55 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=16.3
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 52 srG~aFV~f~~~~~A~~A 69 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQL 69 (95)
T ss_dssp CSSEEEEECSSSHHHHHH
T ss_pred CceEeEEEECCHHHHHHH
Confidence 489999999999999984
No 227
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.64 E-value=0.23 Score=30.65 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=35.1
Q ss_pred ecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
.+|||||+|.+.++|+.+..+.+..+. .....|.+.+..+...++.....
T Consensus 60 ~~G~afV~F~~~~~a~~Al~~~g~~~~---------gr~i~V~~a~~~~~~~~~~~~~~ 109 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALKKDRESMG---------HRYIEVFKSHRTEMDWVLKHSGP 109 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGGGTTEEET---------TEEEEEEEECHHHHHHHHHTTSS
T ss_pred CCeEEEEEECCHHHHHHHHhcCCCeEC---------CeEEEEEECCHHHHHHHHHHhCC
Confidence 479999999999999997765543321 12456677777777777665543
No 228
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=92.29 E-value=0.099 Score=29.88 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.4
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~ 65 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVK 65 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHT
T ss_pred EeEEEEEEECCHHHHHHHHH
Confidence 47999999999999999554
No 229
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=92.23 E-value=0.23 Score=31.79 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=32.2
Q ss_pred ecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHH
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKK 91 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 91 (131)
.+|||||+|.+.++|+.+..+.+..+. ....-|...+..+...+++
T Consensus 87 srG~aFV~F~~~e~a~~Al~~~g~~l~---------gr~i~V~~a~~~e~~~~~~ 132 (136)
T 2hgl_A 87 QSGEAFVELGSEDDVKMALKKDRESMG---------HRYIEVFKSHRTEMDWVLK 132 (136)
T ss_dssp EEEEEEEECSSHHHHHHHHTTTEEESS---------SSEEEEEECCHHHHHHHHT
T ss_pred CCeEEEEEECCHHHHHHHHhcCCCEEC---------CEEEEEEECChHHHHHHHh
Confidence 479999999999999997765553321 1245667777777666554
No 230
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.02 E-value=0.11 Score=31.64 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHhhccCCeeEEEEecCeEEEEECCHHHHHhh
Q psy1185 23 EAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 23 ~~F~~~G~v~~~~i~~~~~fv~~~~~~~a~~~ 54 (131)
.-|...-.|.=+.-.+|||||+|.+.++|+.+
T Consensus 39 ~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~A 70 (100)
T 2d9o_A 39 QKYGEVLNLVLSSKKPGTAVVEFATVKAAELA 70 (100)
T ss_dssp HTTSCEEEEEEESSSSSEEEEEESCHHHHHHH
T ss_pred HhcCCEEEEEEccCCCCEEEEEECCHHHHHHH
Confidence 33443333333345799999999999999984
No 231
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.95 E-value=0.099 Score=32.22 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=19.7
Q ss_pred ecCeEEEEECCHHHHHhhcCCcee
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQV 60 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~ 60 (131)
.+|||||+|.+.++|+.+..+.+.
T Consensus 55 ~~G~afV~F~~~~~a~~Al~~~~~ 78 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEALKRNRM 78 (109)
T ss_dssp CCSEEEEECSSHHHHHHHHHTTTE
T ss_pred CCeEEEEEECCHHHHHHHHhcCCC
Confidence 479999999999999997654443
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.76 E-value=0.31 Score=30.21 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=32.4
Q ss_pred cCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHH
Q psy1185 38 KDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 93 (131)
+|||||+|.+.++|+.+..+.+..+. .....|.+.+.......+..+
T Consensus 67 ~G~afV~F~~~~~a~~Al~~~g~~~~---------gr~i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALCRHKQYMG---------NRFIQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHTSCSBCST---------TSCBEEEEECHHHHHHHHHHH
T ss_pred CeEEEEEECCHHHHHHHHHhCCCeEC---------CcEEEEEECCHHHHHHHHHHH
Confidence 79999999999999997765442211 124566777777766555544
No 233
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.71 E-value=0.12 Score=31.37 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.8
Q ss_pred ecCeEEEEECCHHHHHhhcCCc
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~ 58 (131)
.+|||||+|.+.++|..+....
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~~~ 72 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVETP 72 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHTSS
T ss_pred CccEEEEEECCHHHHHHHHHcC
Confidence 4899999999999999976543
No 234
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=91.64 E-value=0.1 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 60 ~kG~afV~f~~~~~A~~Ai 78 (99)
T 4fxv_A 60 SLGYGFVNYVTAKDAERAI 78 (99)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred ccccEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 235
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.52 E-value=0.12 Score=30.87 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=17.4
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 55 ~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 55 FKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp EEEEEEEEESSHHHHHHHGG
T ss_pred cceEEEEEECCHHHHHHHHh
Confidence 37899999999999999654
No 236
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=91.44 E-value=0.11 Score=32.03 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 44 ~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERA 61 (115)
T ss_dssp EEEEEEEEESCHHHHHHH
T ss_pred CCceEEEEECCHHHHHHH
Confidence 379999999999999984
No 237
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=91.33 E-value=0.14 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.9
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 53 ~kG~afV~f~~~~~A~~Ai 71 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKII 71 (100)
T ss_dssp ECSEEEEEESSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 4899999999999999854
No 238
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=91.05 E-value=0.13 Score=28.72 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.4
Q ss_pred ecCeEEEEECCHHHHHhhcCCc
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~ 58 (131)
.+|||||+|.+.++|+.+..+.
T Consensus 40 ~~g~afV~f~~~~~a~~a~~~~ 61 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCEIH 61 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHSSS
T ss_pred cCcEEEEEECCHHHHHHHHHCC
Confidence 3799999999999999976543
No 239
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.05 E-value=0.16 Score=31.10 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=31.3
Q ss_pred ecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHH
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKK 91 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 91 (131)
.+|||||+|.+.++|+.+....+..+. .....|.+.+......+..
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~~~~~~~---------gr~i~v~~a~~~~~~~~~~ 101 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERLHRKKLN---------GREAFVHVVTLEDMREIEK 101 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGGCSEEET---------TEEEEEEEECHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHhCCCccC---------CeEEEEEECCHHHHHHHHh
Confidence 479999999999999997655433221 1345677777766655543
No 240
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.01 E-value=0.16 Score=29.09 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 46 ~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 46 CKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHH
Confidence 379999999999999984
No 241
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.93 E-value=0.15 Score=30.50 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=17.3
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 56 ~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 56 LKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp BCSCEEEEESSHHHHHHHHG
T ss_pred cCeEEEEEECCHHHHHHHHh
Confidence 37899999999999999654
No 242
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=90.77 E-value=0.15 Score=29.45 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred cCeEEEEECCHHHHHhhcCCc
Q psy1185 38 KDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~~ 58 (131)
+|||||+|.+.++|+.+..+.
T Consensus 48 ~g~afV~f~~~~~a~~a~~~~ 68 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSLALD 68 (89)
T ss_dssp CEEEEEEESSTHHHHHHGGGT
T ss_pred ceEEEEEECCHHHHHHHHhcC
Confidence 799999999999999965433
No 243
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=90.71 E-value=0.17 Score=30.05 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=16.5
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 58 ~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 58 RKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp TTEEEEEESSHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHH
Confidence 899999999999999954
No 244
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=90.68 E-value=0.19 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 48 ~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp ECSEEEEEESSHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHH
Confidence 4899999999999999854
No 245
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=90.56 E-value=0.11 Score=28.96 Aligned_cols=21 Identities=10% Similarity=0.414 Sum_probs=18.0
Q ss_pred ecCeEEEEECCHHHHHhhcCC
Q psy1185 37 IKDYAFVHFEDRQEAITVTGL 57 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~ 57 (131)
.+|||||+|.+.++|+.+...
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHh
Confidence 389999999999999996543
No 246
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=90.50 E-value=0.15 Score=31.26 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 47 ~rG~aFV~f~~~~~A~~Ai 65 (110)
T 3s8s_A 47 HLGLARVLFTSTRGAKETV 65 (110)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHH
Confidence 4799999999999999953
No 247
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=90.46 E-value=0.16 Score=29.16 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 47 ~~g~afV~f~~~~~A~~A~ 65 (87)
T 3bs9_A 47 SKGYGFVSFFNKWDAENAI 65 (87)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3799999999999999844
No 248
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.46 E-value=0.19 Score=30.23 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.4
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 56 ~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHT
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 47999999999999999654
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.45 E-value=0.17 Score=29.66 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 47 ~~g~afV~f~~~~~A~~A~ 65 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAI 65 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHH
T ss_pred cCeEEEEEECCHHHHHHHH
Confidence 3799999999999999943
No 250
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.36 E-value=0.17 Score=30.89 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.9
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 62 ~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CCEEEEEEESSHHHHHHH
T ss_pred CCeEEEEEECcHHHHHHH
Confidence 368999999999999983
No 251
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=90.35 E-value=0.2 Score=28.72 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 46 ~~g~afV~f~~~~~a~~A 63 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKA 63 (88)
T ss_dssp ECSEEEEEESSHHHHHHH
T ss_pred CCcEEEEEEecHHHHHHH
Confidence 589999999999999984
No 252
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.34 E-value=0.31 Score=28.40 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 56 SRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHH
Confidence 3789999999999999943
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.32 E-value=0.17 Score=32.03 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|..+.
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai 89 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFV 89 (127)
T ss_dssp SCCCEEEEESSHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHH
Confidence 4899999999999999854
No 254
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.30 E-value=0.12 Score=29.93 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=17.9
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+.+
T Consensus 41 ~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTT
T ss_pred CCCEEEEEECCHHHHHHHhc
Confidence 68999999999999998655
No 255
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.28 E-value=0.097 Score=30.62 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 44 ~kG~afV~f~~~~~a~~A 61 (90)
T 3p5t_L 44 SKGFALVGVGSEASSKKL 61 (90)
T ss_dssp EEEEEEECC-CHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHH
Confidence 389999999999999984
No 256
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=90.14 E-value=0.18 Score=28.69 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 42 ~~g~afV~f~~~~~a~~a~ 60 (83)
T 3md1_A 42 SRGYGFVSFTSQDDAQNAM 60 (83)
T ss_dssp EEEEEEEEESCHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 257
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.07 E-value=0.22 Score=29.48 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 51 ~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CCSEEEEEESSHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHH
Confidence 3799999999999999954
No 258
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.03 E-value=0.19 Score=29.67 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=15.7
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
++||||+|.+.++|+.+
T Consensus 52 rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGA 68 (96)
T ss_dssp TCCEEEEESSHHHHHHH
T ss_pred CeEEEEEECCHHHHHHH
Confidence 89999999999999984
No 259
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.00 E-value=0.21 Score=30.02 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=17.2
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 51 ~~g~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARR 70 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHT
T ss_pred cCcEEEEEecCHHHHHHHHH
Confidence 37999999999999999543
No 260
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=90.00 E-value=0.19 Score=31.02 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai 84 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEAL 84 (111)
T ss_dssp SSCCEEEEESSHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHH
Confidence 6899999999999999843
No 261
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.94 E-value=0.22 Score=29.36 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 49 ~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp CCSEEEEEESSHHHHHHHH
T ss_pred cCeEEEEEECCHHHHHHHH
Confidence 4799999999999999944
No 262
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=89.92 E-value=0.23 Score=29.24 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 43 ~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp BCSEEEEEESSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 263
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=89.87 E-value=0.24 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.0
Q ss_pred cCeEEEEECCHHHHHhhcCCc
Q psy1185 38 KDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~~ 58 (131)
+|||||+|.+.++|+.+..+.
T Consensus 78 ~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp EEEEEEEESSHHHHHHHHTTT
T ss_pred ccEEEEEECCHHHHHHHHhcC
Confidence 799999999999999965444
No 264
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=89.69 E-value=0.2 Score=29.42 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.3
Q ss_pred EecCeEEEEECCHHHHHhhc
Q psy1185 36 RIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 36 i~~~~~fv~~~~~~~a~~~~ 55 (131)
..+|||||+|.+.++|+.+.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHH
Confidence 35799999999999999954
No 265
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=89.64 E-value=0.36 Score=30.37 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 87 ~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCEEEEEESCHHHHHHH
T ss_pred cceEEEEEECCHHHHHHH
Confidence 489999999999999984
No 266
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=89.59 E-value=0.21 Score=30.33 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.9
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 66 ~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp CTTCEEEEESSHHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHH
Confidence 4899999999999999954
No 267
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.58 E-value=0.15 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 51 ~~G~aFV~f~~~~~a~~Ai 69 (114)
T 2dnl_A 51 PKGYAFLLFQEESSVQALI 69 (114)
T ss_dssp TTSEEEECCSSHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHH
Confidence 4799999999999998843
No 268
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.52 E-value=0.25 Score=28.84 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 46 ~~g~afV~f~~~~~a~~A 63 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRA 63 (95)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHH
Confidence 379999999999999983
No 269
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=89.52 E-value=0.22 Score=29.65 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=18.2
Q ss_pred ecCeEEEEECCHHHHHhhcCCc
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~ 58 (131)
.+|||||+|.+.++|+.+..+.
T Consensus 60 ~~g~afV~f~~~~~a~~Ai~l~ 81 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSALSLN 81 (100)
T ss_dssp CCSCEEEEECCHHHHHHHHHTT
T ss_pred cCeEEEEEECCHHHHHHHHhcC
Confidence 3799999999999999965433
No 270
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.49 E-value=0.25 Score=29.41 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=15.7
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
++||||+|.+.++|+.+
T Consensus 55 ~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCEEEEEESSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHH
Confidence 79999999999999984
No 271
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=89.45 E-value=0.21 Score=30.37 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||.|.+.++|..+.
T Consensus 67 ~~G~~fV~f~~~~~A~~A~ 85 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAV 85 (104)
T ss_dssp SEEEEEEEESCHHHHHHHH
T ss_pred ccEEEEEEECCHHHHHHHH
Confidence 4899999999999999843
No 272
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=89.43 E-value=0.18 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=17.8
Q ss_pred ecCeEEEEECCHHHHHhhcCC
Q psy1185 37 IKDYAFVHFEDRQEAITVTGL 57 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~ 57 (131)
.+|||||+|.+.++|+.+...
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 52 SRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEEEEEESSTHHHHHHHHS
T ss_pred cccEEEEEECCHHHHHHHHHh
Confidence 379999999999999996543
No 273
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.41 E-value=0.18 Score=29.99 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=16.0
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 53 ~~g~afV~f~~~~~A~~A 70 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAA 70 (102)
T ss_dssp EEEEEEEECSSHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHH
Confidence 378999999999999984
No 274
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.40 E-value=0.26 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 57 ~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SCSEEEEEESSHHHHHHH
T ss_pred cCceEEEEECCHHHHHHH
Confidence 379999999999999983
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=89.37 E-value=0.23 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 50 ~~g~afV~f~~~~~A~~A~ 68 (97)
T 1nu4_A 50 MRGQAFVIFKEVSSATNAL 68 (97)
T ss_dssp HTTCEEEEESSHHHHHHHH
T ss_pred cCcEEEEEeCCHHHHHHHH
Confidence 3799999999999999843
No 276
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.37 E-value=0.24 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp BCSCEEEEESSHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHH
Confidence 4799999999999999943
No 277
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.35 E-value=0.26 Score=29.69 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 56 ~~g~afV~f~~~~~A~~A 73 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKC 73 (111)
T ss_dssp BCSEEEEEESSHHHHHHH
T ss_pred CccEEEEEECCHHHHHHH
Confidence 489999999999999984
No 278
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=89.29 E-value=0.27 Score=29.42 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 54 ~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKA 71 (106)
T ss_dssp CCSEEEEEESSHHHHHHH
T ss_pred cceEEEEEECCHHHHHHH
Confidence 379999999999999984
No 279
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.24 E-value=0.24 Score=28.87 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 57 ~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 57 SKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp CTTCEEEEESCHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHH
Confidence 3799999999999999854
No 280
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=89.23 E-value=0.24 Score=29.93 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=31.4
Q ss_pred ecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHH
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 93 (131)
.+|||||+|.+.++|+.+..+.+..+. .....|.+.+......+++..
T Consensus 54 ~~G~afV~F~~~~~a~~Al~~~~~~~~---------gr~i~V~~a~~~~~~~~~~~~ 101 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALEKHRMYMG---------QRYVEVYEINNEDVDALMKSL 101 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHTTTTCCSS---------SSCCCCEECCHHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHhCcceeC---------CeEEEEEECCHHHHHHHHHhh
Confidence 379999999999999997764432211 123445666776666665543
No 281
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.18 E-value=0.23 Score=29.62 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 56 SKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHH
Confidence 3799999999999999954
No 282
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.11 E-value=0.23 Score=29.23 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.1
Q ss_pred EecCeEEEEECCHHHHHhhc
Q psy1185 36 RIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 36 i~~~~~fv~~~~~~~a~~~~ 55 (131)
..++||||+|.+.++|+.+.
T Consensus 48 ~~~g~afV~f~~~~~a~~A~ 67 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKAL 67 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHH
T ss_pred CcccEEEEEECCHHHHHHHH
Confidence 35799999999999999943
No 283
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=89.09 E-value=0.21 Score=31.65 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.5
Q ss_pred ecCeEEEEECCHHHHHhhcCCc
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~ 58 (131)
.+|||||+|.+.++|+.+....
T Consensus 83 srGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTTT
T ss_pred CceEEEEEECCHHHHHHHHHHC
Confidence 4799999999999999966543
No 284
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.04 E-value=0.24 Score=29.38 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 52 ~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp BCSEEEEECSSHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHH
Confidence 4799999999999999943
No 285
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.99 E-value=0.38 Score=29.28 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=17.3
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~ 87 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMA 87 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHT
T ss_pred cCceEEEEeCCHHHHHHHHH
Confidence 37999999999999999653
No 286
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=88.99 E-value=0.24 Score=28.94 Aligned_cols=19 Identities=37% Similarity=0.428 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai 74 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAV 74 (95)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 287
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.94 E-value=0.24 Score=29.54 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=16.3
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 50 ~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 50 SKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp EEEEEEEEESCHHHHHHH
T ss_pred ccceEEEEECCHHHHHHH
Confidence 479999999999999984
No 288
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=88.80 E-value=0.25 Score=28.64 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 47 ~~g~afV~f~~~~~a~~a 64 (92)
T 2dgv_A 47 SKGCGVVKFESPEVAERA 64 (92)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred cceEEEEEECCHHHHHHH
Confidence 479999999999999983
No 289
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.79 E-value=0.15 Score=28.59 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.4
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 42 ~g~afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVL 59 (77)
T ss_dssp SSEEEECCCCTTHHHHHH
T ss_pred CceEEEEEcCHHHHHHHH
Confidence 799999999999999854
No 290
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=88.79 E-value=0.25 Score=29.50 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.7
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|+.+
T Consensus 56 ~g~afV~f~~~~~A~~A 72 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAA 72 (105)
T ss_dssp EEEEEEEESSHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHH
Confidence 78999999999999984
No 291
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.78 E-value=0.27 Score=29.82 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 64 ~~g~afV~f~~~~~A~~A 81 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAA 81 (113)
T ss_dssp BCSEEEEEBSSHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHH
Confidence 379999999999999984
No 292
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.77 E-value=0.26 Score=29.25 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 53 ~~g~afV~f~~~~~A~~A 70 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDA 70 (102)
T ss_dssp CCSEEEEECSSHHHHHHH
T ss_pred cccEEEEEECCHHHHHHH
Confidence 479999999999999984
No 293
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.69 E-value=0.25 Score=29.05 Aligned_cols=19 Identities=37% Similarity=0.428 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai 74 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAV 74 (98)
T ss_dssp EEEEEEEEESCHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHH
Confidence 3799999999999999844
No 294
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.65 E-value=0.26 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.9
Q ss_pred EecCeEEEEECCHHHHHhh
Q psy1185 36 RIKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 36 i~~~~~fv~~~~~~~a~~~ 54 (131)
-.+|||||+|.+.++|+.+
T Consensus 54 ~~~g~afV~f~~~~~a~~A 72 (97)
T 2e5j_A 54 GPRRRAFLHYPDSAAAQQA 72 (97)
T ss_dssp TTTTEEEEECSSHHHHHHH
T ss_pred CCCcEEEEEECCHHHHHHH
Confidence 4589999999999999984
No 295
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=88.64 E-value=0.44 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 83 ~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 83 SRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred cceEEEEEECCHHHHHHH
Confidence 389999999999999984
No 296
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=88.61 E-value=0.23 Score=29.37 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 62 ~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHH
Confidence 3799999999999999844
No 297
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=88.61 E-value=0.2 Score=30.14 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|..+.
T Consensus 60 ~~G~afV~f~~~~~A~~Ai 78 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAV 78 (105)
T ss_dssp SCCEEEEEECSSSHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHH
Confidence 4799999999999999843
No 298
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.59 E-value=0.17 Score=30.46 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.3
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 54 ~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHT
T ss_pred EeeEEEEEECCHHHHHHHHH
Confidence 47999999999999999553
No 299
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.56 E-value=0.22 Score=29.39 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 51 ~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 51 PAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp EEEEEEEECSCHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHH
Confidence 3799999999999999954
No 300
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.54 E-value=0.32 Score=28.94 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 54 ~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRA 71 (103)
T ss_dssp TCCEEEEEESCHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHH
Confidence 379999999999999984
No 301
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=88.52 E-value=0.28 Score=29.11 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 36 ~~g~afV~f~~~~~a~~A 53 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDA 53 (101)
T ss_dssp SSSEEEEECSSHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 789999999999999983
No 302
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.50 E-value=0.27 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 66 ~~g~afV~f~~~~~a~~Ai 84 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQAL 84 (115)
T ss_dssp SCSEEEEECSSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 4899999999999999843
No 303
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.47 E-value=0.23 Score=28.85 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.7
Q ss_pred cCeEEEEECCHHHHHhhcCCc
Q psy1185 38 KDYAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~~ 58 (131)
+|||||+|.+.++|+.+..+.
T Consensus 50 ~g~afV~f~~~~~a~~A~~~~ 70 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALKCN 70 (91)
T ss_dssp EEEEEEECSSHHHHHHHHHSC
T ss_pred ceEEEEEECCHHHHHHHHHhC
Confidence 789999999999999965433
No 304
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.44 E-value=0.27 Score=29.26 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 56 SKGFAFISFHRREDAARAI 74 (103)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHH
Confidence 3789999999999999843
No 305
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.44 E-value=0.29 Score=29.49 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 60 ~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp SSCCEEEEESCHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHH
Confidence 4799999999999999843
No 306
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.39 E-value=0.33 Score=29.60 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.3
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.++||||+|.+.++|+.+..
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~ 77 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACK 77 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHT
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 47999999999999999543
No 307
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=88.38 E-value=0.27 Score=29.38 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.1
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 65 ~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp EEEEEEEESCHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHH
Confidence 799999999999999843
No 308
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=88.28 E-value=0.24 Score=28.91 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 56 ~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 56 PKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp EEEEEEEEESSTHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHH
Confidence 4789999999999999943
No 309
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.17 E-value=0.22 Score=29.78 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp EEEEEEEEESSTTHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 310
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.14 E-value=0.22 Score=29.53 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.++||||+|.+.++|+.+.
T Consensus 53 ~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp CSSEEEECCSSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 4899999999999999843
No 311
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=88.13 E-value=0.35 Score=29.11 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 67 ~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 67 SKGYALVEYETHKQALAAK 85 (110)
T ss_dssp BCSEEEEEESSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3799999999999999843
No 312
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=88.11 E-value=0.29 Score=30.10 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 47 ~~g~afV~F~~~~~A~~A 64 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNA 64 (116)
T ss_dssp CCCEEEEECSSHHHHHHH
T ss_pred cccEEEEEECCHHHHHHH
Confidence 379999999999999984
No 313
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=88.11 E-value=0.29 Score=29.77 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.2
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 57 ~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp EEEEEEEESSHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHH
Confidence 799999999999999843
No 314
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.09 E-value=0.29 Score=29.09 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 54 ~~g~afV~f~~~~~A~~A 71 (103)
T 2d9p_A 54 SKGFGFVCFSSPEEATKA 71 (103)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred cCEEEEEEECCHHHHHHH
Confidence 478999999999999983
No 315
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.89 E-value=0.26 Score=29.34 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=16.6
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 50 ~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAM 67 (104)
T ss_dssp EEEEEEECSCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHH
Confidence 799999999999999955
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=87.88 E-value=0.32 Score=29.58 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=16.2
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|..+.
T Consensus 56 ~G~~FV~f~~~~~A~~Ai 73 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAV 73 (105)
T ss_dssp SEEEEEEESSHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHH
Confidence 799999999999999843
No 317
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=87.70 E-value=0.31 Score=29.54 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 67 ~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 67 SKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp EEEEEEEEESCHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 4799999999999999843
No 318
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.68 E-value=0.25 Score=29.98 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 68 ~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 68 SKGFGFVTFENSADADRAR 86 (109)
T ss_dssp CTTEEEEECCCSHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHH
Confidence 4899999999999999843
No 319
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.55 E-value=0.24 Score=29.49 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 54 ~~g~afV~f~~~~~A~~A 71 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDA 71 (103)
T ss_dssp BCSCEEEEESSSSHHHHH
T ss_pred CCeEEEEEECCHHHHHHH
Confidence 479999999999999983
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.49 E-value=0.31 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=18.8
Q ss_pred ecCeEEEEECCHHHHHhhcCCce
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQ 59 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~ 59 (131)
.+|||||+|.+.++|+.+..+.+
T Consensus 66 ~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp CCCCEEEEESCGGGHHHHHHHTT
T ss_pred cCcEEEEEeCcHHHHHHHHHcCC
Confidence 47999999999999999664444
No 321
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.35 E-value=0.34 Score=29.50 Aligned_cols=19 Identities=32% Similarity=0.218 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCEEEEEEECCHHHHHHHH
Confidence 5899999999999999843
No 322
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=87.18 E-value=0.33 Score=31.67 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 98 skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 98 SKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp EEEEEEEEESCHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3899999999999999954
No 323
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.03 E-value=0.42 Score=29.90 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.1
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 104 ~~g~afV~f~~~~~a~~A~ 122 (140)
T 2ku7_A 104 HRGFAFVEFELAEDAAAAI 122 (140)
T ss_dssp CCSEEEEEESCHHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHH
Confidence 4799999999999999965
No 324
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=86.87 E-value=0.38 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=16.5
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 69 ~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 69 SLGTADVHFERKADALKAM 87 (107)
T ss_dssp EEEEEEEEESSHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3789999999999999843
No 325
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.80 E-value=0.46 Score=28.83 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=16.3
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|++||+|.+.++|.++.
T Consensus 59 ~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp TTEEEEEESSHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHH
Confidence 799999999999999853
No 326
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.79 E-value=0.41 Score=29.04 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.3
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|..+.
T Consensus 47 ~g~afV~f~~~~~A~~A~ 64 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAV 64 (115)
T ss_dssp TTCEEEEESSHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHH
Confidence 799999999999999854
No 327
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=86.72 E-value=0.46 Score=29.29 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 75 ~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 75 SLGTADVHFERRADALKA 92 (124)
T ss_dssp CCSEEEEEESSHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHH
Confidence 379999999999999984
No 328
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=86.57 E-value=0.34 Score=29.49 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.1
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
++||||+|.+.++|+.+.
T Consensus 67 ~g~afV~f~~~~~a~~A~ 84 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAI 84 (115)
T ss_dssp EEEEEEECSSHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHH
Confidence 789999999999999843
No 329
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.43 E-value=0.26 Score=31.00 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=33.0
Q ss_pred ecCeEEEEECCHHHHHhhcCCceeEEecCCCCCCCCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 37 IKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
.+|||||+|.+.++|+.+....+..+. ..+.-|...+..+...++.....
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~~~~~l~---------gR~i~V~~a~~~e~~~~~~~~~~ 116 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRKHKDLLG---------KRYIELFRSTAAEVQQVLNRFSS 116 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTTTTEESS---------SCEECCEEECHHHHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHhCCCeeC---------CeEEEEEECCHHHHHHHHHhccC
Confidence 379999999999999997654443211 11344455677777777665443
No 330
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.35 E-value=0.42 Score=28.92 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.9
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 55 ~~g~afV~f~~~~~a~~A 72 (114)
T 2do0_A 55 SRGIGTVTFEQSIEAVQA 72 (114)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHH
Confidence 378999999999999884
No 331
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=86.34 E-value=0.45 Score=29.36 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=15.8
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|+.+
T Consensus 64 ~g~afV~f~~~~~a~~A 80 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAA 80 (126)
T ss_dssp CSCEEEEESSHHHHHHH
T ss_pred ceEEEEEECCHHHHHHH
Confidence 79999999999999984
No 332
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.34 E-value=0.41 Score=28.98 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 65 ~~g~afV~f~~~~~a~~A~ 83 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVI 83 (114)
T ss_dssp EEEEEEEEESCHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3799999999999999954
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=86.25 E-value=0.22 Score=29.59 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.6
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 37999999999999999765
No 334
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=85.69 E-value=0.39 Score=29.31 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.8
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 81 ~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 81 SKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCEEEEEEESSHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHH
Confidence 3799999999999999854
No 335
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.16 E-value=0.61 Score=28.07 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.9
Q ss_pred CeEEEEECCHHHHHhhc
Q psy1185 39 DYAFVHFEDRQEAITVT 55 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~~ 55 (131)
+||||+|.+.++|+.+.
T Consensus 51 g~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAV 67 (108)
T ss_dssp TEEEEEESSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHH
Confidence 06999999999999843
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=85.06 E-value=0.62 Score=28.48 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.5
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
+||||+|.+.++|+.+
T Consensus 52 g~afV~f~~~~~a~~A 67 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYA 67 (115)
T ss_dssp SEEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0599999999999984
No 337
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.57 E-value=0.43 Score=27.77 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=14.2
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
++||||+|.+.++|+.+
T Consensus 44 ~g~afV~f~~~~~A~~A 60 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRA 60 (93)
T ss_dssp TTEEEECCSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHH
Confidence 04899999999999884
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=84.27 E-value=0.49 Score=29.97 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.2
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|..+
T Consensus 91 ~~g~afV~f~~~~~A~~A 108 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKA 108 (143)
T ss_dssp TEEEEEEECSSHHHHHHH
T ss_pred cccEEEEEeCCHHHHHHH
Confidence 379999999999999984
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=84.12 E-value=0.83 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=17.2
Q ss_pred cCeEEEEECCHHHHHhhcCCce
Q psy1185 38 KDYAFVHFEDRQEAITVTGLSQ 59 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~g~~~ 59 (131)
+|||||+|.+.++|+.+..+.+
T Consensus 53 kg~afV~f~~~~~a~~A~~l~g 74 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAMAFDG 74 (87)
T ss_dssp SSEEEEEESSHHHHHHHGGGTT
T ss_pred CcEEEEEcCCHHHHHHHHhcCC
Confidence 0489999999999999665444
No 340
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=83.59 E-value=0.36 Score=31.01 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.6
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 85 srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SSCCCEEECSHHHHHHHHTT
T ss_pred CceEEEEEeCCHHHHHHHHh
Confidence 48999999999999999654
No 341
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=83.43 E-value=0.65 Score=29.84 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.++||||+|.+.++|+.+
T Consensus 80 ~~g~afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 80 ACGFCFVEYYSRADAENA 97 (156)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred cceEEEEEECCHHHHHHH
Confidence 478999999999999994
No 342
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=83.37 E-value=0.43 Score=29.87 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.3
Q ss_pred ecCeEEEEECCHHHHHh
Q psy1185 37 IKDYAFVHFEDRQEAIT 53 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~ 53 (131)
.+|||||+|.+. +|..
T Consensus 66 ~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp BCSCEEEECCHH-HHHH
T ss_pred cceEEEEEECCH-HHHH
Confidence 389999999999 8887
No 343
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=82.99 E-value=0.66 Score=28.70 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=16.3
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|++||.|.+.++|..+.
T Consensus 55 ~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp TCCEEEECSSHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHH
Confidence 899999999999999843
No 344
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=82.68 E-value=0.76 Score=28.60 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=16.0
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|++||.|.+.++|..+.
T Consensus 71 ~G~~FV~F~~~e~A~~Ai 88 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAI 88 (118)
T ss_dssp EEEEEEEESSHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHH
Confidence 699999999999999843
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=82.38 E-value=0.73 Score=31.04 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.4
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~ 168 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVE 168 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHHH
Confidence 48999999999999999543
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.33 E-value=0.88 Score=27.52 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.5
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
.|+|||.|.+.++|+++
T Consensus 46 gG~AfV~F~~~esA~~A 62 (96)
T 2diu_A 46 GCSAILRFINQDSAERA 62 (96)
T ss_dssp TTCEEEEESSHHHHHHH
T ss_pred cCEEEEEECCHHHHHHH
Confidence 06899999999999883
No 347
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=82.30 E-value=0.58 Score=29.59 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.7
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 88 ~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp CCSCCEEECSCHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 4799999999999999944
No 348
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.51 E-value=1.5 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=16.1
Q ss_pred eEEEEECCHHHHHhhcCCc
Q psy1185 40 YAFVHFEDRQEAITVTGLS 58 (131)
Q Consensus 40 ~~fv~~~~~~~a~~~~g~~ 58 (131)
||||+|.+.++|+.+..+.
T Consensus 47 ~afV~f~~~~~a~~ai~l~ 65 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLSQS 65 (94)
T ss_dssp EEEEEESSHHHHHHHHTCS
T ss_pred EEEEEECCHHHHHHHHhcC
Confidence 9999999999999965444
No 349
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=81.20 E-value=0.91 Score=30.13 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHHhhccCCeeEEEE-ecCeEEEEECCHHHHHhh
Q psy1185 20 KLKEAFEQYGRVERVKR-IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 20 ~l~~~F~~~G~v~~~~i-~~~~~fv~~~~~~~a~~~ 54 (131)
++..-|...-.|.=..- .++||||+|.+.++|+.+
T Consensus 65 ~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~A 100 (164)
T 1sjr_A 65 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 100 (164)
T ss_dssp HHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHH
T ss_pred HHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHH
Confidence 34444555444433322 478999999999999984
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.63 E-value=1 Score=28.02 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=17.8
Q ss_pred eEEEEECCHHHHHhhcC-CceeEE
Q psy1185 40 YAFVHFEDRQEAITVTG-LSQVII 62 (131)
Q Consensus 40 ~~fv~~~~~~~a~~~~g-~~~~~~ 62 (131)
||||+|.+.++|+.+.. +.+..+
T Consensus 65 faFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 65 YSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEE
Confidence 99999999999998543 555443
No 351
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=80.55 E-value=0.95 Score=29.44 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=16.1
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|||||+|.+.++|+.+
T Consensus 113 ~~g~afV~f~~~~~A~~A 130 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAA 130 (165)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHH
Confidence 379999999999999984
No 352
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.45 E-value=1.1 Score=27.29 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
|||||+|.+.++|+.+
T Consensus 53 GfaFVeF~~~~~A~~A 68 (105)
T 1sjq_A 53 NQAFIEMNTEEAANTM 68 (105)
T ss_dssp TEEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0599999999999883
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=79.12 E-value=0.83 Score=31.64 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.3
Q ss_pred ecCeEEEEECCHHHHHhhcC
Q psy1185 37 IKDYAFVHFEDRQEAITVTG 56 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~g 56 (131)
.+|||||+|.+.++|+.+..
T Consensus 111 skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHT
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 38999999999999999554
No 354
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.07 E-value=1.4 Score=26.53 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.4
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
|||||+|.+.++|+.+
T Consensus 52 g~aFVef~~~~~A~~A 67 (101)
T 2cq1_A 52 NQAFLELATEEAAITM 67 (101)
T ss_dssp TEEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0599999999999884
No 355
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.46 E-value=1.3 Score=26.76 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.2
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
+||||+|.+.++|+.+
T Consensus 53 g~aFVef~~~~~A~~A 68 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAA 68 (102)
T ss_dssp SCEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0399999999999883
No 356
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=78.05 E-value=1.3 Score=29.30 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.6
Q ss_pred ecCeEEEEECCHHHHHhhc
Q psy1185 37 IKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~~ 55 (131)
.+|||||+|.+.++|+.+.
T Consensus 128 ~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAM 146 (177)
T ss_dssp CSCCEEEEESCHHHHHHHH
T ss_pred EeeEEEEEeCCHHHHHHHH
Confidence 3799999999999999853
No 357
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.01 E-value=1.5 Score=26.43 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.2
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|+.+
T Consensus 51 kg~aFVef~~~~~A~~A 67 (104)
T 1wex_A 51 KRQALVEFENIDSAKEC 67 (104)
T ss_dssp TTEEEEEESSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHH
Confidence 04899999999999884
No 358
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=76.46 E-value=1.6 Score=25.78 Aligned_cols=16 Identities=50% Similarity=1.122 Sum_probs=13.5
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
+||||+|.+.++|+.+
T Consensus 46 ~~afV~f~~~~~a~~A 61 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKA 61 (103)
T ss_dssp SCEEEEESSHHHHHHH
T ss_pred CEEEEEeCCHHHHHHH
Confidence 0589999999999984
No 359
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.40 E-value=1.5 Score=27.06 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=14.1
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|+.+
T Consensus 62 kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 62 KSQAFIEMETREDAMAM 78 (112)
T ss_dssp TTEEEEECSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHH
Confidence 04899999999999884
No 360
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.18 E-value=1.8 Score=26.98 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.4
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
|||||+|.+.++|+.+
T Consensus 68 G~AFVeF~~~e~A~~A 83 (119)
T 2ad9_A 68 NQAFIEMNTEEAANTM 83 (119)
T ss_dssp TEEEEECSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0599999999999884
No 361
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.87 E-value=2.3 Score=25.39 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.5
Q ss_pred CeEEEEECCHHHHHhh
Q psy1185 39 DYAFVHFEDRQEAITV 54 (131)
Q Consensus 39 ~~~fv~~~~~~~a~~~ 54 (131)
+||||+|.+.++|+.+
T Consensus 62 g~afV~f~~~~~a~~A 77 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHA 77 (109)
T ss_dssp TEEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHH
Confidence 0599999999999984
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=73.87 E-value=1.9 Score=27.39 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHhhccCCeeEEEEecCe-EEEEECCHHHHHhh
Q psy1185 21 LKEAFEQYGRVERVKRIKDY-AFVHFEDRQEAITV 54 (131)
Q Consensus 21 l~~~F~~~G~v~~~~i~~~~-~fv~~~~~~~a~~~ 54 (131)
|..-|...-.|.=..-.+++ |||+|.+.++|+.+
T Consensus 48 lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~A 82 (130)
T 3zzy_A 48 IFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 82 (130)
T ss_dssp HHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHH
T ss_pred HHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHH
Confidence 33444444444434445787 99999999999994
No 363
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=73.70 E-value=2.3 Score=25.64 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=14.3
Q ss_pred cCeEEEEECCHHHHHhh
Q psy1185 38 KDYAFVHFEDRQEAITV 54 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~ 54 (131)
+|||||+|.+.++|..+
T Consensus 57 kg~AFVef~~~~~A~~A 73 (100)
T 3r27_A 57 KRQALVEFEDVLGACNA 73 (100)
T ss_dssp TTEEEEEESSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHH
Confidence 03899999999999994
No 364
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=72.08 E-value=3.1 Score=31.70 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=23.7
Q ss_pred HHHHHhhccCCeeEEE-----EecCeEEEEECCHHHHHhhc
Q psy1185 20 KLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 20 ~l~~~F~~~G~v~~~~-----i~~~~~fv~~~~~~~a~~~~ 55 (131)
++..-|...-.|.=+. ..+|||||+|.+.++|..+.
T Consensus 121 ~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred HHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 3444455544443322 23899999999999999854
No 365
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.74 E-value=7.9 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=25.6
Q ss_pred cceEEEEeCCHHhHHHHHHHHhCCcceecCcEEEEEecC
Q psy1185 73 RGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD 111 (131)
Q Consensus 73 ~~~~fv~f~~~~~a~~a~~~l~~~~~~~~g~~l~v~~a~ 111 (131)
..+.||+-.. ..+..++..|++. .+.|+.+.++.++
T Consensus 40 d~~s~v~v~~-~~~~~~~~~l~~~--~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 40 DNASYVEILN-GKGPHVLKVMKNT--TVKGKQLKVNKAN 75 (76)
T ss_dssp SSCEEEEECT-TCHHHHHHHHTTC--CC---CCCEEECC
T ss_pred CCcEEEEECH-HHHHHHHHHhccc--cCcCceEEEEECC
Confidence 4577888776 5678899999987 7889998887654
No 366
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=58.18 E-value=5.8 Score=26.77 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.9
Q ss_pred ecCeEEEEECCHHHHHhh
Q psy1185 37 IKDYAFVHFEDRQEAITV 54 (131)
Q Consensus 37 ~~~~~fv~~~~~~~a~~~ 54 (131)
.+|++||+|.+.++|.++
T Consensus 174 ~~G~~fv~f~~~~~a~~a 191 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKA 191 (222)
T ss_dssp EEEEEEEEESSHHHHHHH
T ss_pred ceeEEEEEECCHHHHHHH
Confidence 369999999999999983
No 367
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.68 E-value=1.3 Score=28.76 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHhhccCCeeEEEEecCeEEEEEC
Q psy1185 19 EKLKEAFEQYGRVERVKRIKDYAFVHFE 46 (131)
Q Consensus 19 ~~l~~~F~~~G~v~~~~i~~~~~fv~~~ 46 (131)
+++.+++...|.|+.....+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 4555677778888887777999999975
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=55.50 E-value=7.1 Score=28.91 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=14.0
Q ss_pred cCeEEEEECCHHHHHh
Q psy1185 38 KDYAFVHFEDRQEAIT 53 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~ 53 (131)
+|||||+|.+.++|+.
T Consensus 56 kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 56 KPYSFARYRTTEESKR 71 (345)
T ss_dssp CSEEEEEESSHHHHHH
T ss_pred CCEEEEEECCHHHHHH
Confidence 0499999999999999
No 369
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=50.88 E-value=9.7 Score=26.65 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.8
Q ss_pred cCeEEEEECCHHHHHhhc
Q psy1185 38 KDYAFVHFEDRQEAITVT 55 (131)
Q Consensus 38 ~~~~fv~~~~~~~a~~~~ 55 (131)
+|||||+|.+.++|+.+.
T Consensus 179 kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 179 KNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp GTEEEEEESSHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH
Confidence 048999999999999843
No 370
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=48.38 E-value=20 Score=25.28 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
.+.|+|||..++..-|..++.. +.+....++
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 4679999999999999999988 777766555
No 371
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=40.84 E-value=26 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.2
Q ss_pred CCHHHHHHHhhccCCeeEEEEecCeE
Q psy1185 16 CTEEKLKEAFEQYGRVERVKRIKDYA 41 (131)
Q Consensus 16 ~t~~~l~~~F~~~G~v~~~~i~~~~~ 41 (131)
.+++.+.+.|+..|.|..-.+.-|||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~ 29 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFG 29 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEE
Confidence 45677899999999998877665544
No 372
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=38.00 E-value=11 Score=26.78 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
...|+|||..++..-|..+++.-..+..+.++
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 46799999999999999999876667776655
No 373
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=33.88 E-value=26 Score=25.87 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQ 27 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~ 27 (131)
...|||||.+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999888875
No 374
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=33.29 E-value=31 Score=23.87 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=25.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
.+.|+|+|..++..-|..+++....+....++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 46799999999999999999876556666554
No 375
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.20 E-value=14 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=25.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 7 l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
..|+|+|..++...|..+++..+.+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 3799999999999999999977777776655
No 376
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.81 E-value=1.1e+02 Score=20.21 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=28.3
Q ss_pred EEEeCCCC---------CCCHHHHHHHh--hccCCeeEEEEe-----cCeEEEEECCH
Q psy1185 7 LYVRNLTQ---------YCTEEKLKEAF--EQYGRVERVKRI-----KDYAFVHFEDR 48 (131)
Q Consensus 7 l~v~nLp~---------~~t~~~l~~~F--~~~G~v~~~~i~-----~~~~fv~~~~~ 48 (131)
+.|-|+|. ..+..+|++.| +.|.++.-..+. .|++.|.|.+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 45667776 24557899977 899887655554 45666766665
No 377
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=31.63 E-value=37 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=24.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEe
Q psy1185 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 37 (131)
Q Consensus 6 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~i~ 37 (131)
.+.|+|+|..++...+..++.....+..+.++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 47799999999999988888765455555544
No 378
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=31.37 E-value=41 Score=16.23 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHhhccC
Q psy1185 13 TQYCTEEKLKEAFEQYG 29 (131)
Q Consensus 13 p~~~t~~~l~~~F~~~G 29 (131)
-.+++.++|+.+|.+..
T Consensus 19 ~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SSCCCHHHHHHHHHTCC
T ss_pred cCcCCHHHHHHHHHHcc
Confidence 35788999999998763
No 379
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=28.93 E-value=41 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.9
Q ss_pred eCCCCCCCHHHHHHHhhccC
Q psy1185 10 RNLTQYCTEEKLKEAFEQYG 29 (131)
Q Consensus 10 ~nLp~~~t~~~l~~~F~~~G 29 (131)
|.|+..+|+++|++++++..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 78899999999999999864
No 380
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.29 E-value=25 Score=19.55 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=11.6
Q ss_pred CCeeEEEEecCeEEEEECCH
Q psy1185 29 GRVERVKRIKDYAFVHFEDR 48 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~~~~ 48 (131)
|.|..+...+..|+|+|.+.
T Consensus 28 GtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEecCCcEEEEEEccC
Confidence 44555544466677777554
No 381
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=26.75 E-value=22 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=9.1
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.-
T Consensus 4 G~Vk~fn~~kGfGFI~~ 20 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEV 20 (66)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCeEEEec
Confidence 33444333467777764
No 382
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=26.43 E-value=22 Score=20.05 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=4.5
Q ss_pred cCeEEEEE
Q psy1185 38 KDYAFVHF 45 (131)
Q Consensus 38 ~~~~fv~~ 45 (131)
+|||||.-
T Consensus 12 KGfGFI~~ 19 (74)
T 2kcm_A 12 KKYGFIQG 19 (74)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEec
Confidence 55555554
No 383
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=26.04 E-value=23 Score=19.46 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=9.5
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.=
T Consensus 4 G~Vk~fn~~kGfGFI~~ 20 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITP 20 (67)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCeEEEec
Confidence 33444443477777765
No 384
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.81 E-value=24 Score=19.66 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=9.6
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.-
T Consensus 4 G~Vk~fn~~kGfGFI~~ 20 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIER 20 (73)
T ss_dssp EEEEEEETTTTEEEEEC
T ss_pred EEEEEEECCCCEEEEec
Confidence 34444444477777764
No 385
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=24.54 E-value=25 Score=19.15 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=4.9
Q ss_pred cCeEEEEE
Q psy1185 38 KDYAFVHF 45 (131)
Q Consensus 38 ~~~~fv~~ 45 (131)
+|||||.-
T Consensus 12 kGfGFI~~ 19 (66)
T 1g6p_A 12 KGYGFITK 19 (66)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEec
Confidence 56666654
No 386
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.99 E-value=65 Score=19.40 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcceEEEEeCCHHhHHHHHHHHhC
Q psy1185 71 KNRGFCFLEYDSHKSASLAKKRLAT 95 (131)
Q Consensus 71 ~~~~~~fv~f~~~~~a~~a~~~l~~ 95 (131)
.-+||-||+=.+......|++.+.+
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 4699999999999999999888765
No 387
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.15 E-value=54 Score=14.35 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.8
Q ss_pred CCHHHHHHHhhcc
Q psy1185 16 CTEEKLKEAFEQY 28 (131)
Q Consensus 16 ~t~~~l~~~F~~~ 28 (131)
-++.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3688999998887
No 388
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.93 E-value=52 Score=19.00 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.9
Q ss_pred eCCCCCCCHHHHHHHhhcc
Q psy1185 10 RNLTQYCTEEKLKEAFEQY 28 (131)
Q Consensus 10 ~nLp~~~t~~~l~~~F~~~ 28 (131)
|.|+..+++++|++++++.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999999875
No 389
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=22.89 E-value=36 Score=19.07 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=10.6
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.-
T Consensus 5 G~Vkwfn~~KGfGFI~~ 21 (74)
T 2k5n_A 5 GTITTWFKDKGFGFIKD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCeEEEec
Confidence 44444444488888876
No 390
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.34 E-value=29 Score=19.20 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=10.3
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.-
T Consensus 8 G~Vk~fn~~kGfGFI~~ 24 (71)
T 3i2z_B 8 GNVKWFNESKGFGFITP 24 (71)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCcEEEec
Confidence 44544444478887775
No 391
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.72 E-value=77 Score=18.87 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=20.8
Q ss_pred EeCCCCCCCHHHHHHHh-hccCCeeEEEEe
Q psy1185 9 VRNLTQYCTEEKLKEAF-EQYGRVERVKRI 37 (131)
Q Consensus 9 v~nLp~~~t~~~l~~~F-~~~G~v~~~~i~ 37 (131)
|.++...||..|+...+ ...|.-.++.++
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~~~~y~Lv 50 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGRTGRYTLI 50 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSCCSEEEEE
T ss_pred EECCCCCCcHHHHHHHHHhccCCCccEEEE
Confidence 34788999999988754 445766666665
No 392
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.48 E-value=41 Score=18.67 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=8.7
Q ss_pred CeeEEEEecCeEEEEECC
Q psy1185 30 RVERVKRIKDYAFVHFED 47 (131)
Q Consensus 30 ~v~~~~i~~~~~fv~~~~ 47 (131)
.|.++.-.++.|+|.|.+
T Consensus 33 tI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 33 TIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEccCCcEEEEEEcc
Confidence 344433335566666644
No 393
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.23 E-value=32 Score=19.53 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=9.1
Q ss_pred CCeeEEEEecCeEEEEE
Q psy1185 29 GRVERVKRIKDYAFVHF 45 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~ 45 (131)
|.|+...--+|||||.-
T Consensus 11 G~Vkwfn~~kGfGFI~~ 27 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINR 27 (79)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCcEEEec
Confidence 33333333377777765
No 394
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.99 E-value=1.1e+02 Score=17.86 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=17.7
Q ss_pred EEEEeC--CCC-CCCHHHHHHHhhccCCeeEEEEecCeEEEEECCH
Q psy1185 6 VLYVRN--LTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDR 48 (131)
Q Consensus 6 ~l~v~n--Lp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~fv~~~~~ 48 (131)
-+||.| +|. +.+-.+|. +.|+ . -|+-+|+|+..
T Consensus 52 FlyVnn~~~P~~d~~~~~Ly---~~~k-~------DGfLyv~Ys~~ 87 (91)
T 4gdk_A 52 FIYVNQSFAPSPDQEVGTLY---ECFG-S------DGKLVLHYCKS 87 (91)
T ss_dssp EEEETTTBCCCTTCBHHHHH---HHHC-B------TTEEEEEEESS
T ss_pred EEEECCccCCChhhHHHHHH---HHhC-C------CCEEEEEEeCc
Confidence 478887 343 34445555 4444 1 45666666543
No 395
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.83 E-value=42 Score=19.19 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=10.4
Q ss_pred CCeeEEEEecCeEEEEECC
Q psy1185 29 GRVERVKRIKDYAFVHFED 47 (131)
Q Consensus 29 G~v~~~~i~~~~~fv~~~~ 47 (131)
|.|.++...+..|+|.|.+
T Consensus 45 GTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEeccCCCEEEEEEcC
Confidence 4455544445666666644
No 396
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=20.70 E-value=57 Score=14.05 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.8
Q ss_pred HHHHHHhhccC
Q psy1185 19 EKLKEAFEQYG 29 (131)
Q Consensus 19 ~~l~~~F~~~G 29 (131)
..++.+|.++|
T Consensus 15 kqvkklfkkwg 25 (26)
T 1ytr_A 15 KQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 57788998877
Done!