Your job contains 1 sequence.
>psy1185
MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV
IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTET
MSKVLMLDQQL
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1185
(131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 332 9.5e-31 2
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 252 3.3e-22 2
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 256 5.5e-22 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 245 9.0e-22 2
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 245 9.0e-22 2
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 245 1.2e-21 2
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 245 1.9e-21 2
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 245 1.9e-21 2
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 245 1.9e-21 2
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 245 1.9e-21 2
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 256 2.1e-21 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 245 2.1e-21 2
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 256 4.1e-21 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 256 4.1e-21 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 256 4.7e-21 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 256 4.7e-21 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 256 4.7e-21 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 256 4.7e-21 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 256 4.7e-21 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 255 6.6e-21 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 251 2.0e-20 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 246 4.3e-20 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 210 3.3e-19 2
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 210 3.3e-19 2
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 210 4.2e-19 2
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 207 4.8e-19 2
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 207 5.0e-19 2
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 204 6.9e-19 2
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 200 7.1e-19 2
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 212 7.2e-19 2
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 210 1.0e-18 2
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 210 1.2e-18 2
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 210 1.2e-18 2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 204 1.5e-18 2
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 210 1.8e-18 2
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 210 1.8e-18 2
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 210 1.8e-18 2
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 210 1.8e-18 2
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 210 1.8e-18 2
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 210 1.8e-18 2
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 200 2.4e-18 2
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 207 3.5e-18 2
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 207 3.5e-18 2
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 207 3.7e-18 2
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 200 4.1e-18 2
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 200 5.1e-18 2
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 200 1.3e-17 2
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 200 1.6e-17 2
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 200 1.6e-17 2
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 200 1.6e-17 2
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 200 1.6e-17 2
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 200 1.6e-17 2
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 200 2.6e-17 2
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 200 2.6e-17 2
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 203 2.9e-17 2
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 185 1.5e-15 2
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 185 1.7e-15 2
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 196 6.5e-15 1
UNIPROTKB|F1NZU2 - symbol:SYNCRIP "Uncharacterized protei... 166 1.3e-11 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 123 4.2e-11 2
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 113 5.1e-10 2
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 98 2.9e-07 2
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 95 5.3e-07 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 114 6.1e-07 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 114 6.1e-07 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 114 6.1e-07 1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 113 7.8e-07 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 113 7.8e-07 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 109 1.5e-06 2
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 113 2.0e-06 1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 114 3.7e-06 1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 114 3.7e-06 1
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 114 3.7e-06 1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 114 3.8e-06 1
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 114 3.8e-06 1
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 114 3.8e-06 1
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 114 3.8e-06 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 114 3.8e-06 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 114 3.8e-06 1
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo... 114 4.2e-06 1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 114 4.9e-06 1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 113 4.9e-06 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 113 4.9e-06 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 113 4.9e-06 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 113 5.0e-06 1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 115 5.8e-06 1
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 110 9.3e-06 1
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 109 9.8e-06 1
UNIPROTKB|F1RUT1 - symbol:RBM4 "Uncharacterized protein" ... 109 1.3e-05 1
UNIPROTKB|F1RUT8 - symbol:RBM4B "RNA-binding protein 4B" ... 109 1.3e-05 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 74 8.0e-05 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 100 0.00014 1
UNIPROTKB|F1MI47 - symbol:RBM14 "RNA-binding protein 14" ... 103 0.00014 1
UNIPROTKB|Q5EA36 - symbol:RBM14 "RNA-binding protein 14" ... 103 0.00014 1
UNIPROTKB|E2RS43 - symbol:RBM14 "Uncharacterized protein"... 103 0.00014 1
UNIPROTKB|Q96PK6 - symbol:RBM14 "RNA-binding protein 14" ... 103 0.00014 1
MGI|MGI:1929092 - symbol:Rbm14 "RNA binding motif protein... 103 0.00014 1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 95 0.00019 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 74 0.00023 2
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 96 0.00030 1
WARNING: Descriptions of 21 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 332 (121.9 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 60/72 (83%), Positives = 67/72 (93%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
GL +VIIYSSPDD KKNRGFCFLEY+SHK+ASLAK+RL TGR+KVWGCDIIVDWADPQEE
Sbjct: 271 GLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEE 330
Query: 116 PDTETMSKVLML 127
PD +TMSKV +L
Sbjct: 331 PDEQTMSKVKVL 342
Score = 220 (82.5 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 48/81 (59%), Positives = 58/81 (71%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ + GL+
Sbjct: 336 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 395
Query: 59 --------QVIIYSSPDDNKK 71
+V + P D KK
Sbjct: 396 KEIGASNIEVSLAKPPSDKKK 416
Score = 39 (18.8 bits), Expect = 9.5e-31, Sum P(2) = 9.5e-31
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 38 KDYAFVHFEDRQEAI 52
+ YAFV F +R+ A+
Sbjct: 205 RGYAFVTFTNREAAV 219
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 252 (93.8 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 46/80 (57%), Positives = 62/80 (77%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V
Sbjct: 260 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTV 319
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 320 EWADPIEDPDPEVMAKVKVL 339
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 333 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 392
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 393 KDLEGENIEIVFAKPPDQKR 412
Score = 38 (18.4 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 209 FCTKEAAQEAVKLYNNHE 226
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 233 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 292
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 293 EWADPVEEPDPEVMAKVKVL 312
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 306 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAV 357
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 245 (91.3 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 171 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 231 EWADPIEDPDPEVMAKVKVL 250
Score = 174 (66.3 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 303
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 304 KDLEGENIEIVFAKPPDQKR 323
Score = 38 (18.4 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 120 FCTKEAAQEAVKLYNNHE 137
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 245 (91.3 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 171 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 231 EWADPIEDPDPEVMAKVKVL 250
Score = 174 (66.3 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 303
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 304 KDLEGENIEIVFAKPPDQKR 323
Score = 38 (18.4 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 120 FCTKEAAQEAVKLYNNHE 137
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 245 (91.3 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 261 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 320
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 321 EWADPIEDPDPEVMAKVKVL 340
Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
Score = 38 (18.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 210 FCTKEAAQEAVKLYNNHE 227
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 245 (91.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 261 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 320
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 321 EWADPIEDPDPEVMAKVKVL 340
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITV 54
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ V
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKV 387
Score = 38 (18.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 210 FCTKEAAQEAVKLYNNHE 227
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 245 (91.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 261 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 320
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 321 EWADPIEDPDPEVMAKVKVL 340
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
Score = 38 (18.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 210 FCTKEAAQEAVKLYNNHE 227
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 245 (91.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 261 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 320
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 321 EWADPIEDPDPEVMAKVKVL 340
Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 334 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 393
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 394 KDLEGENIEIVFAKPPDQKR 413
Score = 38 (18.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 210 FCTKEAAQEAVKLYNNHE 227
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 245 (91.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 265 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 324
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 325 EWADPIEDPDPEVMAKVKVL 344
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 338 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 397
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 398 KDLEGENIEIVFAKPPDQKR 417
Score = 38 (18.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 214 FCTKEAAQEAVKLYNNHE 231
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 256 (95.2 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 104 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 163
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 164 EWADPVEEPDPEVMAKVKVL 183
Score = 175 (66.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 177 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 236
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 237 KEIEGEEIEIVLAKPPDKKRKER 259
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 245 (91.3 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG V
Sbjct: 276 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV 335
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 336 EWADPIEDPDPEVMAKVKVL 355
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 349 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 408
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G + I+++ P D K+
Sbjct: 409 KDLEGENIEIVFAKPPDQKR 428
Score = 38 (18.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 15 YCTEEKLKEAFEQYGRVE 32
+CT+E +EA + Y E
Sbjct: 225 FCTKEAAQEAVKLYNNHE 242
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 256 (95.2 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 226 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 285
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 286 EWADPVEEPDPEVMAKVKVL 305
Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 299 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 358
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 359 KEIEGEEIEIVLAKPPDKKRKER 381
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 256 (95.2 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 324 EWADPVEEPDPEVMAKVKVL 343
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 337 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNG 396
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 397 KEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 255 (94.8 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL VI+Y PDD KKNRGFCFLEY+ HKSA+ A++RL +G++KVWG + V
Sbjct: 292 EEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 351
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP EEPD E M+KV +L
Sbjct: 352 EWADPVEEPDPEVMAKVKVL 371
Score = 175 (66.7 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT----VTG 56
M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ + G
Sbjct: 365 MAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMNG 424
Query: 57 LS------QVIIYSSPDDNKKNR 73
++++ PD +K R
Sbjct: 425 KEIEGEEIEIVLAKPPDKKRKER 447
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 251 (93.4 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 46/80 (57%), Positives = 62/80 (77%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFLEY+ HK+A+ A++RL +G++KVWG + V
Sbjct: 325 EEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTV 384
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 385 EWADPIEDPDPEVMAKVKVL 404
Score = 176 (67.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 38/83 (45%), Positives = 54/83 (65%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLS- 58
M+KVKVL+VRNL TEE L++AF Q+G +ERVK++KDYAFVHF DR A+ +T ++
Sbjct: 398 MAKVKVLFVRNLANSVTEEILEKAFGQFGNLERVKKLKDYAFVHFNDRDGAVKALTEMNG 457
Query: 59 --------QVIIYSSPDDNKKNR 73
+++ PD +K R
Sbjct: 458 KELEGEHIEIVFAKPPDQKRKER 480
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 246 (91.7 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 45/80 (56%), Positives = 61/80 (76%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT GL+ VI+Y PDD KKNRGFCFL Y+ HK+A+ A++RL +G++KVWG + V
Sbjct: 262 EEFAKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTV 321
Query: 108 DWADPQEEPDTETMSKVLML 127
+WADP E+PD E M+KV +L
Sbjct: 322 EWADPIEDPDPEVMAKVKVL 341
Score = 171 (65.3 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT------- 53
M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+HFE+R A+
Sbjct: 335 MAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHG 394
Query: 54 --VTGLSQVIIYSSPDDNKK 71
+ G I+++ P D K+
Sbjct: 395 KDLEGEPIEIVFAKPPDQKR 414
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 210 (79.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 52 (23.4 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEA 109
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 210 (79.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 52 (23.4 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEA 109
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 210 (79.0 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A++RL GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 51 (23.0 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEA 109
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 207 (77.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 154 (59.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL TEE +++ F + G VERVK+I+DYAFVHF R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRDYAFVHFNKREDAVHAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 52 (23.4 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEA 109
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 207 (77.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 150 (57.9 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 52 (23.4 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEA 109
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 204 (76.9 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D +NRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKMLDGSP 295
Score = 55 (24.4 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F +RQEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNRQEA 109
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 200 (75.5 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 34/72 (47%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TM+ V +L
Sbjct: 222 VDEDTMATVKIL 233
Score = 153 (58.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT-VTGL 57
M+ VK+LYVRNL TEE +++ F G VERVK+I+DYAFVHF R++AI + L
Sbjct: 227 MATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRDYAFVHFSQREDAINAMNAL 286
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 287 NGKVIDGSP 295
Score = 59 (25.8 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V L + E++L E++G++ V+ + D YAFV F +QEA
Sbjct: 58 IFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRGYAFVTFSTKQEA 109
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 212 (79.7 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E ++E + VT G+ VI+Y S D KNRGF F+EY+SHK+A++A+++L G ++WG
Sbjct: 140 EIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHT 199
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
I VDWA+P++E D ETM +V +L
Sbjct: 200 IQVDWAEPEKELDEETMQRVRVL 222
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAIT-VTGL 57
M +V+VLYVRNL TEE L+ F Q G VERVK++ DYAF+HF +R++A+T + +
Sbjct: 216 MQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 58 SQVIIYSSP 66
+ +I SP
Sbjct: 276 NGKVIDGSP 284
Score = 44 (20.5 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FEQ G + + + + YAFV + R++A
Sbjct: 47 VFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEFSGENRGYAFVMYTTREKA 98
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 210 (79.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 210 (79.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 210 (79.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 204 (76.9 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY++H++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 52 (23.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEA 109
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGSVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 210 (79.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 47 DRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDII 106
D + +T G+ VI+Y S D KNRGF F+EY+SH++A++A+++L G ++WG I
Sbjct: 159 DEMKKVT-EGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217
Query: 107 VDWADPQEEPDTETMSKVLML 127
VDWADP++E D ETM +V +L
Sbjct: 218 VDWADPEKEVDEETMQRVKVL 238
Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M +VKVLYVRNL TEE +K F ++ G VERVK+++DYAFVHF R++A+
Sbjct: 232 MQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAV 285
Score = 43 (20.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE+ G++ + + + YAFV + ++EA
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEA 114
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 200 (75.5 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 150 (57.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
Score = 46 (21.3 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 124
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 207 (77.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 155 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 214
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 215 VDEDTMSSVKIL 226
Score = 151 (58.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 220 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 279
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 280 NGKVLDGSP 288
Score = 45 (20.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++ EA
Sbjct: 51 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEA 102
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 207 (77.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 151 (58.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 45 (20.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++ EA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEA 109
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 207 (77.9 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ E
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 221
Query: 116 PDTETMSKVLML 127
D +TMS V +L
Sbjct: 222 VDEDTMSSVKIL 233
Score = 151 (58.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
MS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ + L
Sbjct: 227 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 58 SQVIIYSSP 66
+ ++ SP
Sbjct: 287 NGKVLDGSP 295
Score = 45 (20.9 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++ EA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEA 109
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 200 (75.5 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 180 EEVSKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 239
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 240 DWAEPEIDVDEDVMETVKIL 259
Score = 144 (55.7 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL +EE L++ F Q+ G VERVK+I+DYAFVHF R +A+
Sbjct: 253 METVKILYVRNLMIETSEEILRQTFGQFNPGCVERVKKIRDYAFVHFASRDDAV 306
Score = 52 (23.4 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 84 IFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRGYAFVMYTQKHEA 135
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 200 (75.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+DYAFVHF R++AI
Sbjct: 242 METVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAI 295
Score = 51 (23.0 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDGKNRGYAFVMYTQKHEA 124
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 200 (75.5 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 131 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 190
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 191 DWAEPEIDVDEDVMETVKIL 210
Score = 150 (57.9 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 204 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 257
Score = 46 (21.3 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 35 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 86
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 200 (75.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 153 (58.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
Score = 46 (21.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 124
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 200 (75.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMQTVKIL 248
Score = 152 (58.6 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TEE +K +F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 MQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
Score = 46 (21.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 124
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 200 (75.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
Score = 46 (21.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKNEA 124
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 200 (75.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 295
Score = 46 (21.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKNEA 124
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 200 (75.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 228
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 229 DWAEPEIDVDEDVMETVKIL 248
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 242 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAV 295
Score = 46 (21.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 124
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 200 (75.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 171 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 231 DWAEPEIDVDEDVMETVKIL 250
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 244 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 297
Score = 44 (20.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 75 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVTYCHKGEA 126
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 200 (75.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIV 107
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L GR+++WG I V
Sbjct: 171 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 230
Query: 108 DWADPQEEPDTETMSKVLML 127
DWA+P+ + D + M V +L
Sbjct: 231 DWAEPEIDVDEDVMETVKIL 250
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAI 52
M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+DYAFVHF R++A+
Sbjct: 244 METVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAV 297
Score = 44 (20.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 75 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVTYCHKGEA 126
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 203 (76.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 37/73 (50%), Positives = 55/73 (75%)
Query: 56 GLSQVIIYSSPDDNK-KNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
G+ VI+YS PD+ K KNRGFCF+++ HK+AS K+++A +++ + D+ VDWA+ QE
Sbjct: 307 GVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQE 366
Query: 115 EPDTETMSKVLML 127
EPD +TMSKV +L
Sbjct: 367 EPDEDTMSKVKVL 379
Score = 173 (66.0 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
MSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF+HF +R + +
Sbjct: 373 MSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFNERDDCL 424
Score = 41 (19.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+YV ++ E+ L FE+ G++ ++ + D YAFV + ++++A
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDA 254
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 185 (70.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+ D KNRGF F+EY+SH++A++A++RL G ++WG + VDWA P++E
Sbjct: 167 GVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKE 226
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 227 VDAETMRRVKVL 238
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVHF +R++A+ +
Sbjct: 232 MRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAMSI 290
Score = 39 (18.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHF---EDRQEAITV 54
++V + + E++L FE+ G++ ++ + ++ AFV + ED Q AI +
Sbjct: 63 VFVGKIPRNIYEDELVPLFERAGKIYELRLMMEFSGENRGFAFVMYTTKEDAQLAIKI 120
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 185 (70.2 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ VI+ D KNRGF F+EY+SH++A++A++RL G ++WG + VDWA P++E
Sbjct: 96 GVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKE 155
Query: 116 PDTETMSKVLML 127
D ETM +V +L
Sbjct: 156 VDAETMRRVKVL 167
Score = 139 (54.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKDYAFVHFEDRQEAITVTGL 57
M +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVHF +R++A+ +
Sbjct: 161 MRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAMSI 219
Score = 36 (17.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 18 EEKLKEAFEQYGRVERVKRIKDY-------AFVHF---EDRQEAITV 54
E++L FE+ G++ ++ + ++ AFV + ED Q AI +
Sbjct: 3 EDELVPLFERAGKIYELRLMMEFSGENRGFAFVMYTTKEDAQLAIKI 49
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 196 (74.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 46 EDRQEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCD 104
E+ +E VT GL +I+ PDD KKN GFCFLEY+ HKSA+ A+ L +G++ VWG
Sbjct: 87 ENFEEFSKVTEGLVGIILDHQPDDKKKNWGFCFLEYEDHKSAAQARLWLMSGKV-VWGNV 145
Query: 105 IIVDWADPQEEPDTETMSKVLML 127
+ V+ ADP EEPD E M+KV +L
Sbjct: 146 VTVERADPVEEPDPEGMAKVKVL 168
Score = 168 (64.2 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
M+KVKVL+VRNL TEE L+++F Q+G +ERVK++ DYAFVHFEDR EA+
Sbjct: 162 MAKVKVLFVRNLATTVTEEILEKSFSQFGELERVKKLTDYAFVHFEDR-EAV 212
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 166 (63.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT---------V 54
VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ +
Sbjct: 222 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL 281
Query: 55 TGLSQVIIYSSPDDNKK 71
G + I+++ P D K+
Sbjct: 282 EGENIEIVFAKPPDQKR 298
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 123 (48.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 49 QEAITVT-GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATG 96
+E VT G+ VI+Y+S D KNRGF F+EY+SH++A++A+++L G
Sbjct: 169 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 217
Score = 46 (21.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
++V + + E++L FE GR+ ++ + D YAFV + + EA
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEA 124
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 113 (44.8 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRL 93
G+ VI+Y S D KNRGF F+EY+SH++A++A+++L
Sbjct: 162 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKL 199
Score = 45 (20.9 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 51
+++ L + E++L E+ G++ ++ + D YAFV F ++ EA
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEA 109
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRIK-DYAFVHFEDRQEAI 52
++VK LYV+N+ + + E+LKE F+++G V ++ K K D+ FVH+ +R A+
Sbjct: 289 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
Score = 97 (39.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ + + P + +NRGF F+ Y ++ A +++++ K+ G V WADP+
Sbjct: 222 GVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSS 281
Query: 116 PD 117
P+
Sbjct: 282 PE 283
Score = 51 (23.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+++ L + EE L++ E+ G + V+ +KD YAFV F+ + A
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVA 170
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 95 (38.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++ ++V N + L+ F++YGRV+RV YAFV+FED ++A
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDA 48
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA--DPQEEPD 117
Y + + R F F+++++ + A+ A + AT R K+ + V++A D E D
Sbjct: 117 YGKVTNVRIRRNFSFVQFETQEDATKALE--ATQRSKILDRVVSVEYALKDDDERDD 171
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 109 (43.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 56 GLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKV--WGCDIIVDWADPQ 113
G+ + SPD KNRGF F+EY H A A++ L +K+ + + V+W+DP
Sbjct: 200 GIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDP- 258
Query: 114 EEPDT 118
+P T
Sbjct: 259 -DPTT 262
Score = 33 (16.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKD--------YAFVHFEDR 48
++ + + EE+L E F + V ++ +KD + FV F DR
Sbjct: 94 IFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDR 145
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 114 (45.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 114 (45.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 114 (45.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 114 (45.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ ++GL
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGL 131
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 114 (45.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ ++GL
Sbjct: 80 LHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGL 131
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 113 (44.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 113 (44.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 113 (44.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 115 (45.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 52
++V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDAL 130
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 110 (43.8 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGLSQVII 62
VK+ ++ NL Q ++LK F QYG V IK++AFVH +DR+ A + L +
Sbjct: 2 VKI-FIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKL 60
Query: 63 YSSPDDNKKNRG 74
+ +P + + +RG
Sbjct: 61 HGTPINVEASRG 72
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 109 (43.4 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 109 (43.4 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI-TVTGL 57
L+V N++ CT +L+ FE+YG V +KDYAFVH E ++A+ + GL
Sbjct: 80 LHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 131
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA 48
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA-ITVTGL 57
L+V N++ CT ++L+ FE YG + R KDY F+H E Q A + V GL
Sbjct: 80 LHVGNISPTCTNQELRAKFEAYGGLLRCFLKKDYIFIHLEREQPACLRVPGL 131
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 74 (31.1 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 234 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 275
Score = 73 (30.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
+ + K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 107 LGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 165
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
S K LYV NL++ TE + + F Q G + K I + + R+ + G S V+
Sbjct: 5 SHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSD---SSRKMNSSSIGFS-VL 60
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTE 119
++S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 61 QHTSNDP------YCFVEFFEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTS 112
Query: 120 TMSKVLMLD 128
V + D
Sbjct: 113 NHFHVFVGD 121
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 95 (38.5 bits), Expect = 0.00019, P = 0.00019
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDR 48
S+VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R
Sbjct: 31 SQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER 85
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 74 (31.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 263 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 304
Score = 71 (30.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 140 KTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 194
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 96 (38.9 bits), Expect = 0.00030, P = 0.00030
Identities = 33/132 (25%), Positives = 60/132 (45%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDR---QEAITVTGLSQV 60
VK+ +V N+ TE++L+ FE+YG V +K+Y FVH ++ Q+A++ +V
Sbjct: 2 VKI-FVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEV 60
Query: 61 ----IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
I +N ++ A+ K L KV CDI+ ++A +
Sbjct: 61 NGSRITVEYATTKVRNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQR 120
Query: 117 DTETMSKVLMLD 128
+ E + + L+
Sbjct: 121 ENEALDAIAKLN 132
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-KD---YAFVHFEDRQEA-ITVTG 56
S + +YV N+ TE L+E F G VE K I KD Y FVH+ DR+ A + +
Sbjct: 56 STCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILS 115
Query: 57 LSQVIIYSSP 66
L+ ++ P
Sbjct: 116 LNGRHLFGQP 125
Score = 54 (24.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 70 KKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118
++++GF F+ Y++H A+LA + + + ++ I W + P T
Sbjct: 299 QRDKGFGFVRYNTHPEAALAIQ-MGNTQPYLFNRQIKCSWGNKPTPPGT 346
>TAIR|locus:2163746 [details] [associations]
symbol:PTB2 "AT5G53180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AB025622
HOGENOM:HOG000238077 KO:K14948 EMBL:BT015760 EMBL:BT020199
IPI:IPI00533493 RefSeq:NP_200130.1 UniGene:At.43107
ProteinModelPortal:Q9FGL9 SMR:Q9FGL9 IntAct:Q9FGL9 STRING:Q9FGL9
PaxDb:Q9FGL9 PRIDE:Q9FGL9 EnsemblPlants:AT5G53180.1 GeneID:835399
KEGG:ath:AT5G53180 GeneFarm:5075 TAIR:At5g53180 eggNOG:NOG263807
InParanoid:Q9FGL9 OMA:KKMEPES PhylomeDB:Q9FGL9
ProtClustDB:CLSN2720458 Genevestigator:Q9FGL9 GermOnline:AT5G53180
Uniprot:Q9FGL9
Length = 429
Score = 97 (39.2 bits), Expect = 0.00035, P = 0.00035
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RI---KDYAFVHFEDRQEAITVTGLSQV 60
KVL++RNL CTEE+L E + +G V K + ++ AF+ FED +AI + +
Sbjct: 18 KVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQM-----I 72
Query: 61 IIYSSPDDNKKNRG-FCFLEYDSHK 84
Y+S + + RG +L+Y + +
Sbjct: 73 SYYASSSEPAQVRGKTVYLQYSNRQ 97
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 61
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 62 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 113
Query: 123 KVLMLD 128
V + D
Sbjct: 114 HVFVGD 119
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ LYV NL++ TE + + F Q G + K I + D + + G S V+ ++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQP-----DSRRVNSSVGFS-VLQHT 62
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWAD-PQ-EEPDTETMS 122
S D +CF+E+ H+ A+ A + GR K+ G ++ V+WA P ++ DT
Sbjct: 63 SNDP------YCFVEFYEHRDAAAALAAM-NGR-KILGKEVKVNWATTPSSQKKDTSNHF 114
Query: 123 KVLMLD 128
V + D
Sbjct: 115 HVFVGD 120
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 74 (31.1 bits), Expect = 0.00067, Sum P(2) = 0.00066
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 524 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 565
Score = 72 (30.4 bits), Expect = 0.00067, Sum P(2) = 0.00066
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ ++ + + K YAF+ F ED +EA+
Sbjct: 401 KTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 455
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 95 (38.5 bits), Expect = 0.00068, P = 0.00067
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAIT-VTG 56
K LYV+NL++ TE+ L+E FE YGR+ K + D + FV +E+ Q A+ V G
Sbjct: 203 KNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIG 262
Query: 57 L 57
L
Sbjct: 263 L 263
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 74 (31.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 529 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 570
Score = 72 (30.4 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ ++ + + K YAF+ F ED +EA+
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 460
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 74 (31.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 529 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 570
Score = 72 (30.4 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ ++ + + K YAF+ F ED +EA+
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 460
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 74 (31.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 609 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 650
Score = 72 (30.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 540
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 74 (31.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 610 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 651
Score = 72 (30.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 487 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 541
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 74 (31.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 611 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 652
Score = 72 (30.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 488 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 542
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 74 (31.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 609 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 650
Score = 72 (30.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEAL 540
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 74 (31.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 614 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 655
Score = 72 (30.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK--RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ + +V + + + K YAF+ F ED +EA+
Sbjct: 491 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEAL 545
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 74 (31.1 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 72 NRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++GF F++++S + A AK+ + G + G + +DWA P+ E
Sbjct: 619 SKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPKGE 660
Score = 72 (30.4 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----RIKDYAFVHF---EDRQEAI 52
K L + NL+ TEE L+E FE+ ++ + + K YAF+ F ED +EA+
Sbjct: 496 KTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEAL 550
>UNIPROTKB|F5H4Y5 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI01015313 ProteinModelPortal:F5H4Y5 SMR:F5H4Y5
Ensembl:ENST00000543178 ArrayExpress:F5H4Y5 Bgee:F5H4Y5
Uniprot:F5H4Y5
Length = 79
Score = 60 (26.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 39
++V + + +E+ L+E FEQYG V + ++D
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD 50
Score = 37 (18.1 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 71 KNRGFCFLEYDSHKSASLAKKRL 93
+++G CF+ + + K+A A+ L
Sbjct: 57 QSKGCCFVTFYTRKAALEAQNAL 79
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 131 131 0.00091 102 3 11 22 0.40 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 121
No. of states in DFA: 601 (64 KB)
Total size of DFA: 141 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 13.49u 0.09s 13.58t Elapsed: 00:00:17
Total cpu time: 13.50u 0.09s 13.59t Elapsed: 00:00:18
Start: Thu Aug 15 12:01:30 2013 End: Thu Aug 15 12:01:48 2013
WARNINGS ISSUED: 1