RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1185
(131 letters)
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 75.1 bits (184), Expect = 2e-19
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 25/118 (21%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ + + E++ E + VI+Y+S
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVL-------------------------DVIVYASA 38
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTETMSKV 124
D KNRGF F+EY+SH++A++A+++L GR+++WG I VDWA+P+ + D + M V
Sbjct: 39 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 96
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 55.3 bits (133), Expect = 7e-12
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 27/109 (24%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+ VRN+ + +++E F +G ++ V+ K
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKK--------------------------M 44
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+RGF F+++ + + A A L ++G ++++WAD +
Sbjct: 45 TGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRLVLEWADSEVT 92
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 53.7 bits (129), Expect = 3e-11
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 7 LYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEA 51
+++ NL + ++ F +YG++ K +AFV + + + A
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNA 63
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 50.4 bits (120), Expect = 5e-10
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEA 51
MS VK+LYVRNL +EE +++ F RVK+I+DYAFVHF +R++A
Sbjct: 5 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDA 57
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.2 bits (117), Expect = 2e-09
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 31/113 (27%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
S V + V NL T + L + F ++G V ++
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF------------------------ 40
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
K N+ L+Y SA AK L + C + +D++
Sbjct: 41 -------TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 86
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 48.1 bits (114), Expect = 4e-09
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+++NL TEE LK F + G ++ + +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSC------------------------TISKKKNK 36
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
+ GF F+EY + A A K+L + G + V ++ +P
Sbjct: 37 AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKLEVRISERATKP 84
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 47.6 bits (113), Expect = 5e-09
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEA 51
LYV NL + T+++L F +YG + + + + AFV + R+EA
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 46.7 bits (110), Expect = 1e-08
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 28/109 (25%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+++ NL E+ L + F +G + + +I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-------------------------- 34
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
D ++G+ F+ + S ++ A + A + I V +A ++
Sbjct: 35 PDTGNSKGYAFINFASFDASDAAIE--AMNGQYLCNRPITVSYAFKKDS 81
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.1 bits (106), Expect = 6e-08
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 37/115 (32%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
M+K LY+ NL+ T + L++ F + +
Sbjct: 1 MNK---LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----------------------- 34
Query: 61 IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
G+ F++Y A A + L +G++++ G + VD++ ++
Sbjct: 35 ----------LKSGYAFVDYPDQNWAIRAIETL-SGKVELHGKIMEVDYSVSKKL 78
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 45.4 bits (107), Expect = 7e-08
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVER-----VKRIKDYAFVHFEDRQEA 51
++LY+RNL T E++ + F +YG + + + A+V +ED +A
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDA 59
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 45.0 bits (106), Expect = 7e-08
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFEDRQEA 51
+Y + T++ +++ F +G++ ++ K Y+FV F + A
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESA 67
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 44.2 bits (104), Expect = 1e-07
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 29/106 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L V L Q T+ +L F G + + ++DY
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY-------------------------- 38
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112
+ G+ F+++ S + A K L + V + V +A P
Sbjct: 39 -KTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSYARP 81
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 44.1 bits (104), Expect = 1e-07
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 29/104 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV +L TE L E F G + ++ +D
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM-------------------------- 36
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
+++ G+ ++ + A A + + G + + W+
Sbjct: 37 -ITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 77
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 44.2 bits (104), Expect = 1e-07
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITVTG 56
+ ++ L L++ F G+V V+ I D A+V F + Q G
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 78
Query: 57 LSQVIIYS-----SPDDNKKNR 73
L+ + +KNR
Sbjct: 79 LTGQRLLGVPIIVQASQAEKNR 100
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 43.8 bits (103), Expect = 1e-07
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEA 51
++V L+ EEK++E F +G VE ++ + + F+ F++ +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 54
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 43.9 bits (103), Expect = 2e-07
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 27/104 (25%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV L + T+++L++ F QYGR+ + + D
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV---------------------- 46
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWA 110
+RG F+ +D A A K L + I V +A
Sbjct: 47 -----SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.8 bits (103), Expect = 2e-07
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 31/117 (26%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
+ K L V L TE+ LKE F +G V V+ KD
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL-------------------- 44
Query: 61 IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
++GF F+ + +++ R + G + ++ D
Sbjct: 45 -------KTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCKLPNSKQSQD 90
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 42.6 bits (100), Expect = 5e-07
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEA 51
L V NL ++ ++E F ++G +++ A VHFE + +A
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 54
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 42.3 bits (99), Expect = 5e-07
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+++ L+ T+E L+E F Q+G V+ ++D + FV F D+
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV 55
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 42.8 bits (100), Expect = 5e-07
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 21/108 (19%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+YV+ L T + L + F+Q G V+ KR + D++
Sbjct: 11 IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE----------------- 53
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
K +G + Y+ +A A + G + V A +
Sbjct: 54 --TGKPKGDATVSYEDPPTAKAAVEWF--DGKDFQGSKLKVSLARKKP 97
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 42.6 bits (100), Expect = 5e-07
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 29/110 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV NL+ Y TEE++ E F + G ++++ D
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-------------------------- 43
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
K GFCF+EY S A A + + ++ I DW +E
Sbjct: 44 -MKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRTDWDAGFKEG 90
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 42.3 bits (99), Expect = 6e-07
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+YV L + +E L E F Q G V KD
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR-------------------------- 45
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+++G+ F+E+ S + A A K + +K++G I V+ A +
Sbjct: 46 -VTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVNKASAHNK 91
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.0 bits (98), Expect = 8e-07
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
LYV N+ TEE + + F R+ + + + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-------------------- 43
Query: 67 DDNKKNRGFCFLEYDSHKSASLA 89
+++ F FLE+ S + A
Sbjct: 44 --INQDKNFAFLEFRSVDETTQA 64
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.9 bits (98), Expect = 8e-07
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEA 51
L+V NL TEE++++ FE+YG+ V + K + F+ E R A
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLA 57
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 41.2 bits (96), Expect = 1e-06
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEA 51
L V L+ Y TE L+E F +YG + V + D AFV+FE+ +A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 41.7 bits (97), Expect = 2e-06
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAI 52
+S V++VR L + E L EA E++G + V K A V FE+ A
Sbjct: 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 65
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.2 bits (96), Expect = 2e-06
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEA 51
++V T TE++L+E F QYG V V K +AFV F D Q A
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA 55
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.4 bits (94), Expect = 3e-06
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 51
+++ L+ T++ LK+ F ++G V D + FV F++ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 54
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 40.0 bits (93), Expect = 4e-06
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEA 51
+++ L++ L+ T+E L+ FEQ+G + KR + + FV + +E
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 40.0 bits (93), Expect = 6e-06
Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 31/114 (27%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
S V ++++NL + + L + F +G + K + D
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--------------------- 44
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++G+ F+ +++ ++A A +++ L + V ++E
Sbjct: 45 --------NGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGRFKSRKE 88
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 40.0 bits (93), Expect = 6e-06
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 30/116 (25%)
Query: 1 MSKVK-VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQ 59
M+ K VLYV L + ++ L AF +G + ++ DY
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK--------------- 45
Query: 60 VIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+RGF F+E++ + A+ A + +++G I V+ A P
Sbjct: 46 ------------HRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVNLAKPMRI 87
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 40.0 bits (93), Expect = 6e-06
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEA 51
+ LYV NL++ TE + + F Q G + K I + Y FV F + ++A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 39.3 bits (91), Expect = 1e-05
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 5 KVLYVRNL-TQYCTEEKLKEAFEQYGRVERVKR--IKDYAFVHFEDRQ 49
+V+++ + +L + E +G + + AF+ +
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTE 56
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 39.3 bits (91), Expect = 1e-05
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEA 51
+YV NL + +++ F +YG + + +AFV FED ++A
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDA 66
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 38.9 bits (90), Expect = 1e-05
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 30/113 (26%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVII 62
+ + L++ L+ TEE L+ +EQ+G++
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV--------------------------- 51
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+K++RGF F+ + S A +A + G + A +EE
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAA---MAARPHSIDGRVVEPKRAVAREE 101
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 38.5 bits (89), Expect = 2e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEA 51
L++ L Y ++++KE +G ++ K YAF + D
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 56
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 38.9 bits (90), Expect = 2e-05
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 34/109 (31%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ L +NL+ TE++LKE FE + V
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV------------------------------ 46
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
+ K++G ++E+ S A + ++ G + + + +
Sbjct: 47 --SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLYYTGEK 91
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 39.0 bits (90), Expect = 2e-05
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 7 LYVRNL-----TQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAI 52
L ++ T K + F Y + + ++F + A
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAA 60
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 38.1 bits (88), Expect = 3e-05
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEA 51
S K L+V N+ + L++ F Q+G++ V+ I + + FV FE+ +A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 64
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 38.8 bits (89), Expect = 5e-05
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 30/115 (26%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQV 60
VK ++V + + E L++ FEQYG++E ++ + D
Sbjct: 94 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-------------------- 133
Query: 61 IIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+ K RGF F+ +D H S + V G + V A ++E
Sbjct: 134 -------GSGKKRGFAFVTFDDHDSVDKI---VIQKYHTVNGHNCEVRKALSKQE 178
Score = 38.8 bits (89), Expect = 5e-05
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITVT 55
++ L++ L+ T+E L+ FEQ+G + KR + + FV + +E
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 56 GLSQVIIYSSPDDNKKNRGFCF 77
+ + K+
Sbjct: 66 NARPHKVDGRVVEPKRAVSRED 87
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 37.4 bits (86), Expect = 6e-05
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 29/111 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+VRNL+ +EE L++ F YG + + D
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK---------------------- 48
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
+GF F+ + + A A + G + V + ++E
Sbjct: 49 -----PKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVLPSTIKKEAS 92
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.4 bits (86), Expect = 7e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 30/112 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
++ NL TEE +KE F V + P
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNIS---------------------------AVRLPREP 50
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDT 118
+ ++ +GF + E++ S L+ + I VD AD ++ D+
Sbjct: 51 SNPERLKGFGYAEFEDLDS---LLSALSLNEESLGNKRIRVDVADQAQDKDS 99
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 7e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAI 52
L++ N+ +EE LK F G V + + + A + +EA+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 62
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.0 bits (85), Expect = 8e-05
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEA 51
++ V+ L + +L E+ G V+ + K Y+F + +E+
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEES 69
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.6 bits (84), Expect = 9e-05
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 29/108 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
+ V NL++ E L+E F +G + R+ KD
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-------------------------- 44
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
+++GF F+ + + A+ A ++ + V+WA P
Sbjct: 45 -TTGQSKGFAFISFHRREDAARAIAGVS--GFGYDHLILNVEWAKPST 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 36.6 bits (84), Expect = 9e-05
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 29/106 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L V L Q T+E+ + F G +E K ++D
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-------------------------- 38
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112
++ G+ F+ Y K A A L L++ I V +A P
Sbjct: 39 -ITGQSLGYGFVNYIDPKDAEKAINTLN--GLRLQTKTIKVSYARP 81
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 36.6 bits (84), Expect = 1e-04
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 28/112 (25%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+Y+ NL + +++LK++ F F + +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAI-------------FSRFGQILDILV----------- 39
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
+ K RG F+ + SA+ A + + + + + +A +
Sbjct: 40 --SRSLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKPMRIQYAKTDSDI 87
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 36.6 bits (84), Expect = 1e-04
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEA 51
L+V L + L F+++G + + + +A++ +E A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAA 66
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 35.9 bits (82), Expect = 1e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITVT 55
VK ++V + + E L++ FEQYG++E ++ + D +AFV F+D +
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 56 GLSQVII 62
+
Sbjct: 62 IQKYHTV 68
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 35.9 bits (82), Expect = 2e-04
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITVTGLS 58
++V L+ T E +K FEQ+G+V+ + + FV FE V +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 59 QVII 62
I
Sbjct: 62 FHEI 65
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 35.5 bits (81), Expect = 3e-04
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
+L+V ++ + E++++E F YG ++ + D
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF--------------------- 47
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
++G+ +EY++HK A AK+ L ++ G I VDW +
Sbjct: 48 ------SKGYALVEYETHKQALAAKEALN--GAEIMGQTIQVDWCFVK 87
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.1 bits (80), Expect = 4e-04
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-YAFVHFEDRQEA 51
S + V+NL Q +++ + + Y AFV + ++A
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQA 53
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.0 bits (80), Expect = 4e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 1 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQ 49
S V + ++ EE E E+YG VE + + +V F +
Sbjct: 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREE 79
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 34.7 bits (79), Expect = 6e-04
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 29/115 (25%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVII 62
++ ++V N+ TEE+LK+ F + G V + + D
Sbjct: 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP----------------- 49
Query: 63 YSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPD 117
+G+ F EY ++A A + L + G + VD A ++ +
Sbjct: 50 ----------KGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDNAASEKNKE 92
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 34.3 bits (78), Expect = 0.001
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 30/115 (26%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
+ ++V L + T+ L++ FE +G + +
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDI---------------------------EEA 40
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEP 116
+ + K+RG+ F+ +A A K + G V+ A +P
Sbjct: 41 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDGRKANVNLAYLGAKP 92
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 33.6 bits (76), Expect = 0.001
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 29/106 (27%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ N T+ +++ + V R+
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL-------------------------- 37
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADP 112
+R F +++ S + A ++L LK+ G ++ ++P
Sbjct: 38 -RFNTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLVTKVSNP 80
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 33.9 bits (77), Expect = 0.001
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQ 49
++ V+N+ + +++ + F Y + +K A V FE R
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.1 bits (75), Expect = 0.002
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L++ +L Q ++ L + F +G V K D
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK-------------------------- 54
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
++ F F+ YD+ SA A + + ++ + V + +
Sbjct: 55 -QTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQLKRSKND 100
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.2 bits (75), Expect = 0.002
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 31/115 (26%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
K +++RNL+ EE L E +Q+G ++ V+ + H
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-------------------- 48
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRL----ATGRLKVWGCDIIVDWADPQEE 115
++G F ++ + ++A G LK+ G + VD A ++E
Sbjct: 49 -------SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 32.7 bits (74), Expect = 0.002
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHF---EDRQEAI 52
K LYV T L+ AF +G + + AFV + E +A+
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAV 56
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 32.1 bits (72), Expect = 0.004
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQE 50
+ V+NL + + K+ + F+ G + V +A + F
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDG 52
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 33.0 bits (74), Expect = 0.004
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 29/111 (26%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+ L V + E +L++ FE+YG +E VK + D
Sbjct: 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRG----------------- 85
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+ F+++ S SA A L + + V A +
Sbjct: 86 ----------YGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVALAASGHQ 124
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 32.1 bits (72), Expect = 0.005
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 30/119 (25%)
Query: 2 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVI 61
S ++ N+ T+ + + E E +
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV---------------------- 43
Query: 62 IYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEEPDTET 120
D+N + G +++ + A + R K+ G + V ++ + E
Sbjct: 44 -----DNNGQGLGQALVQFKNEDDARKS---ERLHRKKLNGREAFVHVVTLEDMREIEK 94
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 32.0 bits (72), Expect = 0.006
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 5 KVLYVRNL-TQYCTEEKLKEAFEQYGRVERVK---RIKDYAFVHFEDRQE 50
VL V NL + T + L F YG V+RVK K+ A V D +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQ 52
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.1 bits (72), Expect = 0.007
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 4 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEA 51
+ + +L E L F +G ++ + + + F+++ +
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKE 60
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 31.3 bits (70), Expect = 0.011
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRIKDYAFVHFEDRQE 50
+ V L + + LK+ + G V + V + +++
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKED 62
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.9 bits (69), Expect = 0.012
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 29/109 (26%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSP 66
L+V L+ E+ L++ F +YG++ V +KD
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-------------------------- 41
Query: 67 DDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+ +++RGF F+ +++ A A + V G I VD A +
Sbjct: 42 -ETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVDQAGKSSD 87
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 30.3 bits (67), Expect = 0.015
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVER-VKRIKDYAFVHFEDRQ 49
+ +R L T +++ + Y V + K AFV + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGE 44
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.9 bits (69), Expect = 0.015
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 29/111 (26%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
KVLY++NL+ TE L F ++ +
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR------------------------- 53
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQEE 115
+ RG F+ + + + A A + K++G +++++ +++
Sbjct: 54 --MMTGRMRGQAFITFPNKEIAWQALHLVN--GYKLYGKILVIEFGKNKKQ 100
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.6 bits (68), Expect = 0.020
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 30/109 (27%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSS 65
+ +R L C++E++ + F V +
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV-------------------------- 50
Query: 66 PDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
D ++ G F+++ S + A+K L + ++ I + + E
Sbjct: 51 -DFQGRSTGEAFVQFASQEI---AEKALKKHKERIGHRYIEIFKSSRAE 95
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 30.3 bits (68), Expect = 0.021
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 44 HFEDRQEAITVTGLSQVIIYSSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGC 103
+ +E + V I ++ G + + + A + L GR G
Sbjct: 28 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTL-DGR-WFGGR 85
Query: 104 DIIVDWADP 112
I D
Sbjct: 86 QITAQAWDG 94
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.5 bits (68), Expect = 0.021
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 6 VLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKDYAFVHFEDRQE 50
+++R L TE + F + R+ A V F ++
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHED 67
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.2 bits (67), Expect = 0.022
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 33/110 (30%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
+VL++R L TE ++ +
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPF---------------------------------GKV 35
Query: 65 SPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQE 114
+ K + FLE + ++A + + I + +++ +E
Sbjct: 36 TNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 85
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 30.2 bits (67), Expect = 0.023
Identities = 6/37 (16%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 6 VLYVRNLTQYCTEEKLKEAFE---QYGRVERVKRIKD 39
+++V L+Q + ++ + E ++G++ +V
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS 46
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 29.7 bits (66), Expect = 0.024
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEA 51
LY+R L T++ L + + YG++ K I D FV F+ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 53
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 29.9 bits (66), Expect = 0.032
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVE-------RVKRIKDYAFVHFEDRQEAITVTGLSQ 59
L++ NL + +LK A + R + + +V FE ++ L+
Sbjct: 16 LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 75
Query: 60 VIIYSSP 66
+ ++ +
Sbjct: 76 LKVFGNE 82
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 28.7 bits (63), Expect = 0.068
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVE---RVKRIKDYAFVHFEDRQEA 51
++L++ NL + E L F Q+ + V D AFV F ++
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQS 58
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 28.5 bits (63), Expect = 0.077
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 3 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEA 51
K + +Y++ T + +KE E G+V ++ K FV F+ + A
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 27.8 bits (61), Expect = 0.17
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 30/110 (27%)
Query: 5 KVLYVRNLTQYCTEEK-LKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIY 63
+ + +RNL+ +E L+E+FE +G +E++
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ----------------------- 41
Query: 64 SSPDDNKKNRGFCFLEYDSHKSASLAKKRLATGRLKVWGCDIIVDWADPQ 113
++ N F+ +++ SA A L R + +I V AD +
Sbjct: 42 ---KEHSFNNCCAFMVFENKDSAERA---LQMNRSLLGNREISVSLADKK 85
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 95
Score = 27.9 bits (62), Expect = 0.18
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 21 LKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYS 64
L + YG + V+ + V F D A++V + + +
Sbjct: 41 LMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKG 84
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 28.0 bits (61), Expect = 0.21
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 5 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAIT 53
V+ +NL +++E F ++G + RV + F+ + ++A
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFR 64
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 25.4 bits (55), Expect = 1.3
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 13 TQYC---TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITVTGLSQVIIYSSPDDN 69
T Y TEE + + G V VK + F+ DR + +T + +
Sbjct: 4 THYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLI 63
Query: 70 KKNRGFCFLE 79
K R +
Sbjct: 64 PKLRSEDVVA 73
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 24.8 bits (53), Expect = 1.8
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRV----ERVKRIKDYAFVHFEDRQEAI 52
+ V L + + LK+ + G V FV ED A+
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAV 52
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.1 bits (54), Expect = 1.9
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 7 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQE 50
LY+ NL E++L+ + +G+V + ++D +
Sbjct: 21 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 64
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 24.2 bits (52), Expect = 4.3
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 13 TQYCTEEKLKEAFEQ---YGRVERVKRIKDYAFVHFEDRQEAITV 54
T+YC + +L +Q G V R + + F+ DR+ + V
Sbjct: 3 TEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQV 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,563
Number of extensions: 22236
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 104
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)