BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11853
         (61 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
           Coa-Transferase From Porphyromonas Gingivalis W83
          Length = 434

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           FR ++ F+  N RKAV E R D IP+F  E+P   ++ I+  +VAIVQ+S
Sbjct: 79  FRHITNFVGGNSRKAVEENRADFIPVFFYEVPSXIRKDILHIDVAIVQLS 128


>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
           Transferase (Atoa) In Complex With Coa From Shewanella
           Oneidensis, Northeast Structural Genomics Target Sor119.
 pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
           Transferase (Atoa) In Complex With Coa From Shewanella
           Oneidensis, Northeast Structural Genomics Target Sor119
          Length = 436

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 6   ILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           +L   R   FF     R  +  G  D +PIFLSE+P LF+ G  K + AI+QVS
Sbjct: 66  LLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVS 119


>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
           From Clostridium Aminobutyricum
 pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
           From Clostridium Aminobutyricum
 pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
           Clostridium Aminobutyricum And Coa
          Length = 448

 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           F    +F + + R ++AEG G  +P+F  E+P L ++ I   +V +V VS
Sbjct: 75  FTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVS 124


>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
           (Abft-2) From Porphyromonas Gingivalis. Northeast
           Structural Genomics Consortium Target Pgr26
          Length = 439

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 16  FMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           F+  N R A  + R D IP    E+P LF++G    +VA+VQVS
Sbjct: 82  FLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVS 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.145    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,315,886
Number of Sequences: 62578
Number of extensions: 32492
Number of successful extensions: 99
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)