Query psy11853
Match_columns 61
No_of_seqs 107 out of 771
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:36:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02550 AcetylCoA_hydro: Acet 99.8 2.4E-19 5.2E-24 109.7 4.5 59 3-61 77-135 (198)
2 KOG2828|consensus 99.5 1.3E-14 2.9E-19 96.4 2.1 59 3-61 84-142 (454)
3 TIGR03458 YgfH_subfam succinat 99.5 9.2E-14 2E-18 94.6 6.0 58 4-61 68-127 (485)
4 COG0427 ACH1 Acetyl-CoA hydrol 98.9 1.5E-09 3.4E-14 74.1 2.9 54 8-61 86-140 (501)
5 TIGR01110 mdcA malonate decarb 98.5 1.5E-07 3.3E-12 65.0 3.5 42 18-61 105-148 (543)
6 TIGR01584 citF citrate lyase, 93.6 0.067 1.5E-06 37.4 2.6 49 12-61 100-151 (492)
7 PF14503 YhfZ_C: YhfZ C-termin 84.8 1 2.2E-05 28.8 2.5 37 20-58 129-165 (232)
8 PF08438 MMR_HSR1_C: GTPase of 36.1 10 0.00022 21.6 -0.3 26 13-38 29-56 (109)
9 KOG0256|consensus 34.7 19 0.00041 25.4 0.8 35 6-40 169-203 (471)
10 PF04223 CitF: Citrate lyase, 32.3 53 0.0011 23.3 2.6 47 12-59 77-126 (466)
11 PF00559 Vif: Retroviral Vif ( 32.0 17 0.00036 22.7 0.2 41 2-42 97-144 (192)
12 PF14177 YkyB: YkyB-like prote 30.1 56 0.0012 19.5 2.2 27 19-45 31-57 (140)
13 COG0081 RplA Ribosomal protein 28.7 77 0.0017 20.4 2.7 37 18-57 81-118 (228)
14 PHA02456 zinc metallopeptidase 26.1 18 0.00038 21.2 -0.4 16 30-45 46-61 (141)
15 PF00798 Arena_glycoprot: Aren 25.3 24 0.00051 25.1 0.0 21 36-59 7-27 (487)
16 KOG4792|consensus 22.5 28 0.0006 22.8 -0.1 18 8-25 6-23 (293)
17 COG2107 Predicted periplasmic 21.5 80 0.0017 20.9 1.9 25 29-55 117-141 (272)
18 COG1453 Predicted oxidoreducta 21.4 1.4E+02 0.0031 20.8 3.1 28 19-46 134-161 (391)
19 PRK05802 hypothetical protein; 20.8 28 0.00062 22.8 -0.3 17 25-42 8-24 (320)
20 PRK11063 metQ DL-methionine tr 20.3 89 0.0019 20.1 1.9 27 28-56 175-201 (271)
21 COG3871 Uncharacterized stress 20.1 1.4E+02 0.003 18.0 2.5 23 38-60 101-123 (145)
No 1
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=99.78 E-value=2.4e-19 Score=109.68 Aligned_cols=59 Identities=51% Similarity=0.738 Sum_probs=49.1
Q ss_pred chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
.++...+++.+|||.|+.+|+++++|+++|+|+|||++|++++++..++|||++|||||
T Consensus 77 ~~~~~~~~~~~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~ 135 (198)
T PF02550_consen 77 APESAFHFRHNSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPM 135 (198)
T ss_dssp SGCCTCCEEEEESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE
T ss_pred chhhhhhcccCcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCc
Confidence 45566778889999999999999999999999999999999998777799999999997
No 2
>KOG2828|consensus
Probab=99.48 E-value=1.3e-14 Score=96.42 Aligned_cols=59 Identities=37% Similarity=0.527 Sum_probs=56.6
Q ss_pred chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
.||+.++++-+|.|+|+..||+++.|+++|.|+|||++|.+|..|...+|+++++|||+
T Consensus 84 ~pe~~~~iq~ns~fvg~~irK~Vn~Gradf~pifLsevP~l~t~G~~~~d~alI~vSpp 142 (454)
T KOG2828|consen 84 WPEYDMIIQRNSHFVGKPIRKAVNLGRADFFPIFLSEVPQLLTYGTYTLDFALIEVSPP 142 (454)
T ss_pred ChhhhhhhhcCccccCcchHHHhhcCccccchhHHHhchHHHhcceeeceeEEEEecCC
Confidence 57889999999999999999999999999999999999999998889999999999996
No 3
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=99.47 E-value=9.2e-14 Score=94.57 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred hhhcCCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCC-CCCCEEEEEeecC
Q psy11853 4 THILSIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGI-IKPNVAIVQVSII 61 (61)
Q Consensus 4 ~~~~~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~-~~~dv~~~~VSPm 61 (61)
++.+++|+++ +||.++..||++++|+++|+|++||++|++++.+. +++||+++|||||
T Consensus 68 l~~~g~v~~~is~~~sp~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~ 127 (485)
T TIGR03458 68 LAEADAIARRLPYQSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAI 127 (485)
T ss_pred ccccCCEEEEecccCCHHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeC
Confidence 4566899988 79999999999999999999999999999998665 4899999999997
No 4
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=98.86 E-value=1.5e-09 Score=74.10 Aligned_cols=54 Identities=31% Similarity=0.578 Sum_probs=48.9
Q ss_pred CCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCC-CCEEEEEeecC
Q psy11853 8 SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIK-PNVAIVQVSII 61 (61)
Q Consensus 8 ~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~-~dv~~~~VSPm 61 (61)
.-++..++|.++..||++|+|.++|+|.|||+.|+.++++.++ +|++++++|+|
T Consensus 86 ~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i 140 (501)
T COG0427 86 EVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAI 140 (501)
T ss_pred chhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccc
Confidence 4477788888999999999999999999999999999877665 89999999986
No 5
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=98.47 E-value=1.5e-07 Score=65.00 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=37.0
Q ss_pred CHHHHHHHhcCceeeEeccC--cchHHHHHcCCCCCCEEEEEeecC
Q psy11853 18 AANVRKAVAEGRGDAIPIFL--SEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 18 g~~~Rk~~~~g~~~~vP~~~--s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
++--|+++++|+++|+|+|| |++|++++ .+++||++++||||
T Consensus 105 ~~R~~~av~~G~id~iPih~~lse~pRlf~--~L~pDVALI~aSpA 148 (543)
T TIGR01110 105 SLRIAQLLEDGKLEIGAIHTYLELYSRYFV--DLTPNVSLIAAYEA 148 (543)
T ss_pred hHHHHHHHHcCCeeEeehhchHhhhhhhhh--ccCCcEEEEECCcC
Confidence 33447999999999999999 99999986 47899999999996
No 6
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=93.64 E-value=0.067 Score=37.38 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=34.7
Q ss_pred EeccccCHHHHHHHhcCcee---eEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 12 SMSFFMAANVRKAVAEGRGD---AIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 12 ~~s~f~g~~~Rk~~~~g~~~---~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
..|-++.+..-+++..|... .+-.|=- =++++++|.+++|||+++||||
T Consensus 100 i~~sg~~g~~~~~is~g~l~~p~~~~shgg-r~r~i~~g~l~iDVAfI~Vsp~ 151 (492)
T TIGR01584 100 ITSSGLRGTLGDEISKGILKKPVIIRSHGG-RARAIETGELHIDVAFLGVPCC 151 (492)
T ss_pred EEeCCcCchHHHHHhcCCCCCCeEEecCCc-HHHHHhcCCCCCCEEEEeCCCc
Confidence 56677878788888888653 2222222 3456776788999999999997
No 7
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.
Probab=84.79 E-value=1 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEe
Q psy11853 20 NVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQV 58 (61)
Q Consensus 20 ~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~V 58 (61)
.++...+...++||++.|++++..+.+| .+|.++.-.
T Consensus 129 LT~~~~~gk~Ve~Vei~Y~q~~~~l~~g--~IDA~IWN~ 165 (232)
T PF14503_consen 129 LTEAEFEGKNVEFVEIPYNQLLELLRSG--EIDAAIWNY 165 (232)
T ss_dssp HHHHHHTTS--EEEE--HHHHHHHHHHT--S--EEEEE-
T ss_pred HHHHHhCCCceEEEEecHHHHHHHHHCC--CccEEEECC
Confidence 3455555557899999999999999875 579888654
No 8
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=36.09 E-value=10 Score=21.59 Aligned_cols=26 Identities=31% Similarity=0.179 Sum_probs=9.2
Q ss_pred eccccCHHHHHHHhcCceeeEec--cCc
Q psy11853 13 MSFFMAANVRKAVAEGRGDAIPI--FLS 38 (61)
Q Consensus 13 ~s~f~g~~~Rk~~~~g~~~~vP~--~~s 38 (61)
.|--.--..|++.++|.++|.|. .|.
T Consensus 29 ~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~ 56 (109)
T PF08438_consen 29 TSAAAELALRKAAKAGLIDYIPGDSDFE 56 (109)
T ss_dssp E-HHHHHHHHS-SSS----S--------
T ss_pred ccHHHHHHHHHHHHCCCEEeCCCCCceE
Confidence 33333345699999999999997 454
No 9
>KOG0256|consensus
Probab=34.75 E-value=19 Score=25.37 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=29.3
Q ss_pred hcCCeEEeccccCHHHHHHHhcCceeeEeccCcch
Q psy11853 6 ILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEI 40 (61)
Q Consensus 6 ~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~ 40 (61)
-.+.|-.-+.|+++.+|.+-....++.+|+|.+..
T Consensus 169 pgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss 203 (471)
T KOG0256|consen 169 PGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSS 203 (471)
T ss_pred CCceeeecCCCCCcccccceeccCceEEEEEeecC
Confidence 44668889999999999998777799999997743
No 10
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=32.31 E-value=53 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=29.2
Q ss_pred EeccccCHHHHHHHhcCceeeEeccCcch---HHHHHcCCCCCCEEEEEee
Q psy11853 12 SMSFFMAANVRKAVAEGRGDAIPIFLSEI---PLLFKRGIIKPNVAIVQVS 59 (61)
Q Consensus 12 ~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~---p~~~~~~~~~~dv~~~~VS 59 (61)
..+-++.+..-+++..|... .|..++.= ++.+..|..++|||++.+.
T Consensus 77 I~tsg~rG~lg~aiS~G~l~-~Pvi~rSHGGR~raIe~Ge~~IDVAFi~AP 126 (466)
T PF04223_consen 77 IETSGMRGPLGEAISEGKLK-KPVIIRSHGGRARAIESGELHIDVAFIAAP 126 (466)
T ss_dssp EEESEEHHHHHHHHHCT--S-S-EEE-BHHHHHHHHHCTSS--SEEEEEES
T ss_pred EEeCCcCchHHHHHhCCCCC-CCEEEeCCCCchhheecCCcceEEEEEcCC
Confidence 55667777788888888776 55554433 3446678899999999874
No 11
>PF00559 Vif: Retroviral Vif (Viral infectivity) protein; InterPro: IPR000475 The virion infectivity factor (vif) of Human immunodeficiency virus 1 (HIV-1) affects the infectivity of virus particles [] to T lymphocytes and macrophages (in some cases increasing the infectivity of HIV-1 particles by 100- to 1000-fold), but has no direct effect on transcription, translation or virus release. Vif antibodies are found in the sera of patients at all levels of HIV-1 infection, indicating that vif is expressed in natural infections in vivo. Other lentiviruses, including Simian immunodeficiency virus (SIV-cpz), Visna/Maedi virus, and Feline immunodeficiency virus (FIV), have vif open reading frames, suggesting vif plays an essential role during natural infections []. The expression of vif in BHK-21 cells has been shown to be linked to a modification of the C terminus of gp41env, which modification is inhibited by trans-epoxysuccinyl-L-leucylamido-(4-guanidio)butane (E64), a specific inhibitor of cysteine proteases []. Coupled with sequence analysis and the effects of point mutations in vif, it has been suggested that vif could be a cysteine protease. Virions produced in the absence of Vif have abnormal core morphology and those produced in primary T cells carry immature core proteins and low levels of mature capsid [].; GO: 0019058 viral infectious cycle; PDB: 3DCG_F 3RWJ_C 3RWI_C.
Probab=31.96 E-value=17 Score=22.75 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred CchhhcCCeEEeccc---cCHHHHHHHhcC----ceeeEeccCcchHH
Q psy11853 2 MITHILSIFRSMSFF---MAANVRKAVAEG----RGDAIPIFLSEIPL 42 (61)
Q Consensus 2 ~~~~~~~~~~~~s~f---~g~~~Rk~~~~g----~~~~vP~~~s~~p~ 42 (61)
++|+.++++.+.-+| .....|+|+... .|+|--.|..+++.
T Consensus 97 idP~~AD~lIH~~YF~CFt~~aIR~AIrGe~vl~~C~~~~gH~~qVgS 144 (192)
T PF00559_consen 97 IDPETADQLIHLHYFDCFTDSAIRKAIRGERVLPRCEYPAGHKGQVGS 144 (192)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHhHHhhhhhhhhhhhHHHHhccCCcCCeeCCccCCcCCccc
Confidence 689999998877666 467779998633 24444455544544
No 12
>PF14177 YkyB: YkyB-like protein
Probab=30.09 E-value=56 Score=19.49 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.9
Q ss_pred HHHHHHHhcCceeeEeccCcchHHHHH
Q psy11853 19 ANVRKAVAEGRGDAIPIFLSEIPLLFK 45 (61)
Q Consensus 19 ~~~Rk~~~~g~~~~vP~~~s~~p~~~~ 45 (61)
....|++++|++.-|-.|||.-|++-.
T Consensus 31 ~aL~Kll~E~kA~kiGlHfs~npk~s~ 57 (140)
T PF14177_consen 31 KALQKLLEEGKAKKIGLHFSNNPKYSQ 57 (140)
T ss_pred HHHHHHHHcCcceEEEEeecCCCcchh
Confidence 345788999999999999999998743
No 13
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=77 Score=20.39 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=27.0
Q ss_pred CHHHHHHHhcCceeeEeccCcchHHHHHcC-CCCCCEEEEE
Q psy11853 18 AANVRKAVAEGRGDAIPIFLSEIPLLFKRG-IIKPNVAIVQ 57 (61)
Q Consensus 18 g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~-~~~~dv~~~~ 57 (61)
|....++.++| ++|+.. -++-+...++ ....|++|.+
T Consensus 81 g~~~~~A~~AG-ad~Vg~--edl~e~ik~~r~~~fD~~IAt 118 (228)
T COG0081 81 GEKAEEAKAAG-ADYVGG--EDLIELIKNGRAKDFDVFIAT 118 (228)
T ss_pred hHhHHHHHHcC-CCEecH--HHHHHHHhCcchhcCCEEEEC
Confidence 44556777777 999998 7777877766 4678987764
No 14
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=26.05 E-value=18 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.5
Q ss_pred eeeEeccCcchHHHHH
Q psy11853 30 GDAIPIFLSEIPLLFK 45 (61)
Q Consensus 30 ~~~vP~~~s~~p~~~~ 45 (61)
-||+|+.||.+|+-+-
T Consensus 46 ~D~VPIYF~~L~~~LC 61 (141)
T PHA02456 46 WDPVPIYFRALPQDLC 61 (141)
T ss_pred eccceeehhhcCcchh
Confidence 4799999999988764
No 15
>PF00798 Arena_glycoprot: Arenavirus glycoprotein; InterPro: IPR001535 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. Tacaribe virus (TACV) is an arenavirus that is genetically and antigenically closely related to Junin arenavirus (JUNV), the aetiological agent of Argentine haemorrhagic fever (AHF). It is well established that TACV protects experimental animals fully against an otherwise lethal challenge with JUNV. It has been established that it is the heterologous glycoprotein that protects against JUNV challenge. A recombinant vaccinia virus that expresses JUNV glycoprotein precursor (VV-GJun) protected seventy-two percent of the animals inoculated with two doses of VV-GJun against the lethal JUNV challenge [].; GO: 0019031 viral envelope; PDB: 3KAS_B 1S7U_F 3QUK_F 3QUL_L 1S7W_C 1S7V_F 1S7X_I 1S7R_F 2L0Z_A 1N5A_L ....
Probab=25.27 E-value=24 Score=25.10 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=0.0
Q ss_pred cCcchHHHHHcCCCCCCEEEEEee
Q psy11853 36 FLSEIPLLFKRGIIKPNVAIVQVS 59 (61)
Q Consensus 36 ~~s~~p~~~~~~~~~~dv~~~~VS 59 (61)
.|.++|..+.| ..+||++.||
T Consensus 7 FFqeIP~Ii~E---AlNIALIaVS 27 (487)
T PF00798_consen 7 FFQEIPHIIQE---ALNIALIAVS 27 (487)
T ss_dssp ------------------------
T ss_pred HHhhhHHHHHH---HHHHHHHHHH
Confidence 57789999876 4689999887
No 16
>KOG4792|consensus
Probab=22.49 E-value=28 Score=22.83 Aligned_cols=18 Identities=11% Similarity=0.208 Sum_probs=14.2
Q ss_pred CCeEEeccccCHHHHHHH
Q psy11853 8 SIFRSMSFFMAANVRKAV 25 (61)
Q Consensus 8 ~~~~~~s~f~g~~~Rk~~ 25 (61)
+.+...|||+|+..|+-+
T Consensus 6 D~~er~swYfg~mSRqeA 23 (293)
T KOG4792|consen 6 DSSERSSWYFGPMSRQEA 23 (293)
T ss_pred ChhhccceecCcccHHHH
Confidence 346689999999999654
No 17
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=21.49 E-value=80 Score=20.88 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.7
Q ss_pred ceeeEeccCcchHHHHHcCCCCCCEEE
Q psy11853 29 RGDAIPIFLSEIPLLFKRGIIKPNVAI 55 (61)
Q Consensus 29 ~~~~vP~~~s~~p~~~~~~~~~~dv~~ 55 (61)
.+.+|++.|.+++....+| ++|+.+
T Consensus 117 ~~~~V~m~fdeI~~Avl~G--~VDaGv 141 (272)
T COG2107 117 KAEIVYMPFDEIIPAVLEG--KVDAGV 141 (272)
T ss_pred CceEEEeeHHHHHHHHHcC--CCccce
Confidence 3899999999999998875 688643
No 18
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=21.45 E-value=1.4e+02 Score=20.78 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHhcCceeeEeccCcchHHHHHc
Q psy11853 19 ANVRKAVAEGRGDAIPIFLSEIPLLFKR 46 (61)
Q Consensus 19 ~~~Rk~~~~g~~~~vP~~~s~~p~~~~~ 46 (61)
...||+.++|++-|+-.-||..+..+.+
T Consensus 134 df~~kak~eGkIr~~GFSfHgs~e~~~~ 161 (391)
T COG1453 134 DFLEKAKAEGKIRNAGFSFHGSTEVFKE 161 (391)
T ss_pred HHHHHHHhcCcEEEeeecCCCCHHHHHH
Confidence 4557777777777777777777776653
No 19
>PRK05802 hypothetical protein; Provisional
Probab=20.79 E-value=28 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.6
Q ss_pred HhcCceeeEeccCcchHH
Q psy11853 25 VAEGRGDAIPIFLSEIPL 42 (61)
Q Consensus 25 ~~~g~~~~vP~~~s~~p~ 42 (61)
+++| -+|.|+||.|..+
T Consensus 8 ~d~~-~~~cpc~la~~~~ 24 (320)
T PRK05802 8 IDAG-SEYCPCHLAETGE 24 (320)
T ss_pred eccC-CCcCceeeeccCC
Confidence 4556 7899999987654
No 20
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=20.27 E-value=89 Score=20.06 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=21.4
Q ss_pred CceeeEeccCcchHHHHHcCCCCCCEEEE
Q psy11853 28 GRGDAIPIFLSEIPLLFKRGIIKPNVAIV 56 (61)
Q Consensus 28 g~~~~vP~~~s~~p~~~~~~~~~~dv~~~ 56 (61)
..+.++++-..++|+.+.+ +++|.+++
T Consensus 175 ~~v~~v~~~~~~~~~al~~--g~vDaa~i 201 (271)
T PRK11063 175 KNLKIVELEAPQLPRSLDD--AQIALAVI 201 (271)
T ss_pred CCCEEEECcHHHHHHhccc--ccccEEEE
Confidence 3589999999999999865 45787665
No 21
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=20.13 E-value=1.4e+02 Score=17.96 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=15.7
Q ss_pred cchHHHHHcCCCCCCEEEEEeec
Q psy11853 38 SEIPLLFKRGIIKPNVAIVQVSI 60 (61)
Q Consensus 38 s~~p~~~~~~~~~~dv~~~~VSP 60 (61)
+..-.+|..|.-.||++++.|.|
T Consensus 101 ~~~~~wFe~GkedP~l~~Lkv~~ 123 (145)
T COG3871 101 SVLEAWFEQGKEDPDLTMLKVTA 123 (145)
T ss_pred hhHHHHHhcCCCCCCeEEEEEch
Confidence 34455675566568899888865
Done!