Query psy11853
Match_columns 61
No_of_seqs 107 out of 771
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 20:36:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gk7_A 4-hydroxybutyrate COA-t 99.6 5E-16 1.7E-20 103.7 6.0 60 2-61 67-126 (448)
2 3qli_A Coenzyme A transferase; 99.6 9.5E-16 3.3E-20 102.6 5.6 59 2-61 86-151 (455)
3 3eh7_A 4-hydroxybutyrate COA-t 99.5 2.9E-15 9.8E-20 99.7 3.2 60 2-61 71-130 (434)
4 2oas_A ATOA, 4-hydroxybutyrate 99.3 2.8E-12 9.4E-17 85.2 6.3 59 3-61 63-121 (436)
5 3d3u_A 4-hydroxybutyrate COA-t 99.3 4.5E-12 1.5E-16 84.1 5.3 60 2-61 68-127 (439)
6 4eu9_A Succinyl-COA:acetate co 99.3 6.5E-12 2.2E-16 84.7 6.0 55 7-61 84-139 (514)
7 2g39_A Acetyl-COA hydrolase; c 99.1 2.5E-10 8.5E-15 77.0 6.2 55 7-61 79-135 (497)
8 2nvv_A Acetyl-COA hydrolase/tr 99.1 2.2E-10 7.4E-15 77.5 5.9 54 8-61 75-130 (506)
9 2hj0_A Putative citrate lyase, 98.9 1.6E-09 5.4E-14 73.5 3.7 53 8-61 117-172 (519)
10 1xr4_A Putative citrate lyase 98.7 1E-08 3.5E-13 69.4 4.4 51 10-61 116-169 (509)
11 1k6d_A Acetate COA-transferase 98.1 2.7E-07 9.4E-12 56.5 -0.4 56 5-61 68-159 (220)
12 3cdk_A Succinyl-COA:3-ketoacid 97.8 1.8E-06 6.1E-11 53.6 -0.9 54 8-61 74-162 (241)
13 2ahu_A Putative enzyme YDIF; C 97.3 3.4E-05 1.2E-09 52.4 0.3 29 4-32 85-113 (531)
14 1poi_A Glutaconate coenzyme A- 97.1 6.7E-05 2.3E-09 48.1 -0.5 19 14-32 78-97 (317)
15 3rrl_A Succinyl-COA:3-ketoacid 95.5 0.0068 2.3E-07 37.5 2.2 33 15-47 81-113 (235)
16 3k6m_A Succinyl-COA:3-ketoacid 36.3 11 0.00038 25.4 0.8 14 48-61 163-176 (481)
17 2dky_A RHO-GTPase-activating p 32.5 22 0.00074 18.9 1.4 19 35-53 33-51 (91)
18 2k19_A Putative piscicolin 126 28.6 14 0.00047 20.0 0.2 13 14-26 5-17 (98)
19 1jh4_B PAIP1, polyadenylate-bi 24.8 18 0.00062 14.8 0.2 11 30-40 11-21 (26)
20 2h80_A STAR-related lipid tran 24.3 13 0.00044 19.4 -0.4 19 35-53 31-49 (81)
21 2zrr_A Mundticin KS immunity p 20.2 18 0.00063 20.1 -0.3 16 11-26 22-37 (118)
No 1
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=99.62 E-value=5e-16 Score=103.72 Aligned_cols=60 Identities=28% Similarity=0.502 Sum_probs=56.4
Q ss_pred CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
.++++.++|++++||+++..|+++++|+++|+|+|||++|+++++|.+++|||+++|||+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~ 126 (448)
T 3gk7_A 67 SKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPP 126 (448)
T ss_dssp GSGGGTTTEEEEESSCCTTTHHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCC
T ss_pred cChHHhCcEEEecCcCCHHHHhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecC
Confidence 457788999999999999999999999999999999999999998888999999999985
No 2
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=99.60 E-value=9.5e-16 Score=102.60 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=54.8
Q ss_pred CchhhcCCeEEeccccCHHHHHHHhcCc-------eeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 2 MITHILSIFRSMSFFMAANVRKAVAEGR-------GDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~-------~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
+++++.++|++++||+|+.+||++++|+ ++|+|+|||++|+++++ .+++|||+++|||+
T Consensus 86 ~~~~~~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~-~~~iDVAli~vs~~ 151 (455)
T 3qli_A 86 LRYELNNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE-EIGIDTFMHTVSPM 151 (455)
T ss_dssp TCGGGTTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHT-TTCCSEEEEEECCC
T ss_pred hChhhcCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHh-cCCCCEEEEEEecC
Confidence 4567889999999999999999999997 99999999999999986 67899999999986
No 3
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=99.53 E-value=2.9e-15 Score=99.67 Aligned_cols=60 Identities=40% Similarity=0.687 Sum_probs=31.3
Q ss_pred CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
+++++.++|++++||+++..|+++++|+++|+|+|||++|+++++|.+++|||+++|||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~ 130 (434)
T 3eh7_A 71 MAPEMAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMP 130 (434)
T ss_dssp ---------------------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCC
T ss_pred cChhhhCeEEEecCcCCHHHHHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecC
Confidence 456778899999999999999999999999999999999999998778999999999985
No 4
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=99.32 E-value=2.8e-12 Score=85.25 Aligned_cols=59 Identities=39% Similarity=0.581 Sum_probs=54.5
Q ss_pred chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
++++.+++++++||.++..|+++++|.++|+|++||++|++++++.+++|||+++|||+
T Consensus 63 ~~~l~~~i~~~~~~~~~~lr~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~a 121 (436)
T 2oas_A 63 HPSLLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPP 121 (436)
T ss_dssp SGGGTTTEEEEESSCCTTTHHHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCC
T ss_pred HHHhcCcEEEeecCCCHHHHHHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccC
Confidence 34677899999999999999999999999999999999999987778899999999986
No 5
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=99.27 E-value=4.5e-12 Score=84.10 Aligned_cols=60 Identities=33% Similarity=0.478 Sum_probs=35.3
Q ss_pred CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853 2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm 61 (61)
+++++.+++++.+||.++..|+++++|.++|+|++||++|++++++.+++|||+++||++
T Consensus 68 ~~~~l~~~i~~~~~~~g~~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~ 127 (439)
T 3d3u_A 68 LAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTP 127 (439)
T ss_dssp SSGGGTTTEEEEC--------------------CCGGGHHHHHTTSSSCCSEEEEEEECC
T ss_pred ccHHhCCcEEEEECCCChHHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecC
Confidence 345678999999999999999999999999999999999999987778899999999985
No 6
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=99.27 E-value=6.5e-12 Score=84.75 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=49.3
Q ss_pred cCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcC-CCCCCEEEEEeecC
Q psy11853 7 LSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRG-IIKPNVAIVQVSII 61 (61)
Q Consensus 7 ~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~-~~~~dv~~~~VSPm 61 (61)
...++..+||.++..|+++++|+++|+|++||++|++++++ .+++|||+++||||
T Consensus 84 g~i~~~~~~~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~ 139 (514)
T 4eu9_A 84 NGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAI 139 (514)
T ss_dssp TCEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEE
T ss_pred CCEEEEEecCCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcC
Confidence 34578899999999999999999999999999999998765 46899999999985
No 7
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=99.07 E-value=2.5e-10 Score=77.03 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=48.9
Q ss_pred cCCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCC-CCCEEEEEeecC
Q psy11853 7 LSIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII 61 (61)
Q Consensus 7 ~~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~-~~dv~~~~VSPm 61 (61)
.+.++.. +||.++..|+++++|.++|+|.+||++|++++++.+ ++|||+++|||+
T Consensus 79 ~g~v~~~~~~~~~~~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~a 135 (497)
T 2g39_A 79 AGVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAI 135 (497)
T ss_dssp TTCEEEEESCCCCHHHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEE
T ss_pred CCceEEEEeeCCCHHHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEeccc
Confidence 3677775 588899999999999999999999999999987777 699999999974
No 8
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=99.07 E-value=2.2e-10 Score=77.47 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=48.7
Q ss_pred CCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCC-CCCEEEEEeecC
Q psy11853 8 SIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII 61 (61)
Q Consensus 8 ~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~-~~dv~~~~VSPm 61 (61)
+.++.. +||.++..|+++++|.++|+|++||++|++++++.+ ++|||+++|||+
T Consensus 75 g~v~~~~~~~~~~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~a 130 (506)
T 2nvv_A 75 DAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADV 130 (506)
T ss_dssp TCEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEE
T ss_pred CceEEEeeeCCCHHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEeccc
Confidence 678875 588899999999999999999999999999987777 699999999975
No 9
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=98.85 E-value=1.6e-09 Score=73.47 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=47.3
Q ss_pred CCeEEeccccCHHHHHHHhcCceeeEeccCcc---hHHHHHcCCCCCCEEEEEeecC
Q psy11853 8 SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSE---IPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 8 ~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~---~p~~~~~~~~~~dv~~~~VSPm 61 (61)
..+++.+||+++..|+++++|. +|+|.+||+ .|.+++++.+++|||++++||+
T Consensus 117 ~v~r~~~~~~g~~~r~~i~~G~-~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~a 172 (519)
T 2hj0_A 117 VVTNITSSGLRDKVGAAISEGI-MENPVIIRSHGGRARAIATDDIHIDVAFLGAPSS 172 (519)
T ss_dssp SEEEEEESBCHHHHHHHHHTTC-CSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEE
T ss_pred cEEEEEecCCCcHHHHHHHCCC-CCCCceeeccCCHHHHHhcCCCCCcEEEEEeccc
Confidence 4466789999999999999998 999999999 9999976678899999999984
No 10
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=98.73 E-value=1e-08 Score=69.39 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=45.7
Q ss_pred eEEeccccCHHHHHHHhcCceeeEeccCcc---hHHHHHcCCCCCCEEEEEeecC
Q psy11853 10 FRSMSFFMAANVRKAVAEGRGDAIPIFLSE---IPLLFKRGIIKPNVAIVQVSII 61 (61)
Q Consensus 10 ~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~---~p~~~~~~~~~~dv~~~~VSPm 61 (61)
.++.+||.++..|+++++|.++| |.+|+. .|++++++.+++|||++++||+
T Consensus 116 ~r~~~~~~g~~~r~~i~~G~~~~-P~~~s~~~g~p~ll~~~~l~iDVAlI~as~a 169 (509)
T 1xr4_A 116 RQIYTSGLRGKLGEEISAGLMEN-PVQIHSHGGRVKLIQSGELNIDVAFLGVPCC 169 (509)
T ss_dssp EEEEESBCCHHHHHHHHHTCCSS-CEEECCHHHHHHHHHTTSSCCSEEEEEESEE
T ss_pred EEEEEccCCHHHHHHHHcCCCcC-CeeEeccCCHHHHHhcCCCCceEEEEEeccC
Confidence 45889999999999999999888 999997 9999976678999999999974
No 11
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=98.12 E-value=2.7e-07 Score=56.48 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=40.7
Q ss_pred hhcCCeEEeccccCHHHHHHHhcCceee------------------EeccCcch------------------HHHHHcCC
Q psy11853 5 HILSIFRSMSFFMAANVRKAVAEGRGDA------------------IPIFLSEI------------------PLLFKRGI 48 (61)
Q Consensus 5 ~~~~~~~~~s~f~g~~~Rk~~~~g~~~~------------------vP~~~s~~------------------p~~~~~~~ 48 (61)
++.+++....|+.++..|+++++|.+++ +|.+|+.+ +.++ +..
T Consensus 68 g~v~~~~~s~~~~~~~~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~-~~~ 146 (220)
T 1k6d_A 68 GRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLL-ERP 146 (220)
T ss_dssp TCEEEEEESBCTTCHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEE-ECC
T ss_pred CCccEEEEcCCCCCHHHHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEE-ecC
Confidence 3444554434567899999999999776 88888765 3333 345
Q ss_pred CCCCEEEEEeecC
Q psy11853 49 IKPNVAIVQVSII 61 (61)
Q Consensus 49 ~~~dv~~~~VSPm 61 (61)
+++|||++++|++
T Consensus 147 l~~DVAli~a~~a 159 (220)
T 1k6d_A 147 LRADLALIRAHRC 159 (220)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CCCcEEEEEeecC
Confidence 7899999999985
No 12
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=97.80 E-value=1.8e-06 Score=53.58 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=36.1
Q ss_pred CCeEEeccccCHHHHHHHhcCceee------------------EeccCcch-----------------HHHHHcCCCCCC
Q psy11853 8 SIFRSMSFFMAANVRKAVAEGRGDA------------------IPIFLSEI-----------------PLLFKRGIIKPN 52 (61)
Q Consensus 8 ~~~~~~s~f~g~~~Rk~~~~g~~~~------------------vP~~~s~~-----------------p~~~~~~~~~~d 52 (61)
+++....|+.++..|+++++|.+++ +|.+|+.+ ..++.+..+++|
T Consensus 74 ~~~~~s~~g~~~~~r~~~~~G~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~D 153 (241)
T 3cdk_A 74 KKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGD 153 (241)
T ss_dssp EEEEESBCCSCHHHHHHHTTTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEE
T ss_pred CeEEEeccCCCHHHHHHHHCCCceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCc
Confidence 3443334557899999999999874 66655433 112222356899
Q ss_pred EEEEEeecC
Q psy11853 53 VAIVQVSII 61 (61)
Q Consensus 53 v~~~~VSPm 61 (61)
||++++|++
T Consensus 154 VAlI~a~~a 162 (241)
T 3cdk_A 154 VAIVKAWKA 162 (241)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccC
Confidence 999999985
No 13
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=97.34 E-value=3.4e-05 Score=52.42 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=20.8
Q ss_pred hhhcCCeEEeccccCHHHHHHHhcCceee
Q psy11853 4 THILSIFRSMSFFMAANVRKAVAEGRGDA 32 (61)
Q Consensus 4 ~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~ 32 (61)
+++.+++....|+.++..|+++++|.+++
T Consensus 85 ~g~v~~~~~s~~g~~~~~r~~i~~G~ie~ 113 (531)
T 2ahu_A 85 EGLVKWALCGHWGQSPRISDLAEQNKIIA 113 (531)
T ss_dssp TTTEEEEEESBCTTSHHHHHHHHTTSSEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHCCCceE
Confidence 34445554445667899999999999766
No 14
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=97.06 E-value=6.7e-05 Score=48.09 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.0
Q ss_pred ccc-cCHHHHHHHhcCceee
Q psy11853 14 SFF-MAANVRKAVAEGRGDA 32 (61)
Q Consensus 14 s~f-~g~~~Rk~~~~g~~~~ 32 (61)
+|+ .++..|+++++|.+++
T Consensus 78 ~~~~~~~~~r~~~~~G~ie~ 97 (317)
T 1poi_A 78 GVTNVSRRFRKWFEAGKLTM 97 (317)
T ss_dssp TTBSSCHHHHHHHHHTCSEE
T ss_pred ccccCChHHHHHHHCCCceE
Confidence 455 6799999999999985
No 15
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=95.52 E-value=0.0068 Score=37.47 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=25.5
Q ss_pred cccCHHHHHHHhcCceeeEeccCcchHHHHHcC
Q psy11853 15 FFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRG 47 (61)
Q Consensus 15 ~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~ 47 (61)
|..++..|+++++|.+++.-.+...+.+.+|.+
T Consensus 81 ~g~~~~~~~~~~~G~ie~~~~pqg~la~~~rag 113 (235)
T 3rrl_A 81 VGENKIFESQMLNGEIEVVLTPQGTLAENLHAG 113 (235)
T ss_dssp CCSCHHHHHHHHHTSSEEEECCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHcCCeEEEECCHHHHHHHHHHH
Confidence 345889999999999988777766677776653
No 16
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=36.33 E-value=11 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.4
Q ss_pred CCCCCEEEEEeecC
Q psy11853 48 IIKPNVAIVQVSII 61 (61)
Q Consensus 48 ~~~~dv~~~~VSPm 61 (61)
.+++|||++++|++
T Consensus 163 ~~~~DvAli~a~~a 176 (481)
T 3k6m_A 163 AIRGDFALVKAWKA 176 (481)
T ss_dssp CCCEEEEEEEEEEE
T ss_pred CCCCCEEEEEcCcC
Confidence 35679999999975
No 17
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=32.49 E-value=22 Score=18.89 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=15.3
Q ss_pred ccCcchHHHHHcCCCCCCE
Q psy11853 35 IFLSEIPLLFKRGIIKPNV 53 (61)
Q Consensus 35 ~~~s~~p~~~~~~~~~~dv 53 (61)
.-|.+.+++|.++..++|+
T Consensus 33 aGFPQYAqlyed~~FPIdi 51 (91)
T 2dky_A 33 TGFPQYAQLYEDFLFPIDI 51 (91)
T ss_dssp HTCTTHHHHHHTTCCSCCH
T ss_pred cCChHHHHhcccccccccH
Confidence 4588899999887788886
No 18
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=28.58 E-value=14 Score=20.00 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.3
Q ss_pred ccccCHHHHHHHh
Q psy11853 14 SFFMAANVRKAVA 26 (61)
Q Consensus 14 s~f~g~~~Rk~~~ 26 (61)
-||.|+.+|.-.+
T Consensus 5 KWfsGG~ER~~~A 17 (98)
T 2k19_A 5 KWFSGGKERSNQA 17 (98)
T ss_dssp CCCSCCSCHHHHH
T ss_pred eeccCCHHHHHHH
Confidence 5999999987654
No 19
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=24.82 E-value=18 Score=14.85 Aligned_cols=11 Identities=18% Similarity=-0.019 Sum_probs=8.8
Q ss_pred eeeEeccCcch
Q psy11853 30 GDAIPIFLSEI 40 (61)
Q Consensus 30 ~~~vP~~~s~~ 40 (61)
.+|+|.+||+.
T Consensus 11 peF~Psgys~~ 21 (26)
T 1jh4_B 11 PEFYPSGYSSS 21 (26)
T ss_dssp SCCCCTTCCCC
T ss_pred ceeccCccccc
Confidence 57999999854
No 20
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=24.33 E-value=13 Score=19.39 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=14.0
Q ss_pred ccCcchHHHHHcCCCCCCE
Q psy11853 35 IFLSEIPLLFKRGIIKPNV 53 (61)
Q Consensus 35 ~~~s~~p~~~~~~~~~~dv 53 (61)
.-|.+.+++|.++..++|+
T Consensus 31 aGFPQYAqlyed~qFPIdi 49 (81)
T 2h80_A 31 AGFPQYAQLYEDSQFPINI 49 (81)
T ss_dssp TTCHHHHHTTTTTCCCSCH
T ss_pred cCCcHHHHHhhcccccccH
Confidence 3477788888777777775
No 21
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=20.24 E-value=18 Score=20.13 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=6.1
Q ss_pred EEeccccCHHHHHHHh
Q psy11853 11 RSMSFFMAANVRKAVA 26 (61)
Q Consensus 11 ~~~s~f~g~~~Rk~~~ 26 (61)
...-||.|+.+|.-.+
T Consensus 22 ~~LKWFsGGkER~~~A 37 (118)
T 2zrr_A 22 SNLKWFSGGDDRRKKA 37 (118)
T ss_dssp --------CCCHHHHH
T ss_pred ccceeccCCHHHHHHH
Confidence 3457999999987654
Done!