RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11853
         (61 letters)



>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and
           conversion].
          Length = 501

 Score = 43.5 bits (103), Expect = 7e-07
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIK-PNVAIVQVSII 61
            + R   + + + VRKA+ EG  D +   LSE+P L ++G +   ++A+++ S I
Sbjct: 86  EVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAI 140


>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase
           N-terminal domain.  This family contains several enzymes
           which take part in pathways involving acetyl-CoA.
           Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
           of acetate from acetyl-CoA, CoA transferase (CAT1)
           EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
           transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
           form acetyl-CoA.
          Length = 198

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           ++R          RKA+ +G    +   LSE+P LF+ G +  +VA+++ +
Sbjct: 83  LYRPAPKQSGELGRKAINQGLASFVDKHLSEVPQLFEYGFVPIDVALIETT 133


>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
           This enzyme represents one of at least two mechanisms
           for reclaiming CoA from butyryl-CoA at the end of
           butyrate biosynthesis (an important process performed by
           some colonic bacteria), namely transfer of CoA to
           acetate. An alternate mechanism transfers the butyrate
           onto inorganic phosphate, after which butyrate kinase
           transfers the phosphate onto ADP, creating ATP [Energy
           metabolism, Fermentation].
          Length = 445

 Score = 32.5 bits (74), Expect = 0.005
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 14  SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           S+ M    RKA+A+G     PI  SE+P  ++      +VA+ QV+
Sbjct: 79  SWHMGGIERKAIAKGFAFYSPIRYSELPRYYRESNTPVDVAMFQVA 124


>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
          Length = 570

 Score = 28.3 bits (64), Expect = 0.18
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 18  AANVRKAVAEGRGDAIPIFLSEIPLLFKR--GIIKPNVAIV 56
            ANV K +   +GD + IF+  IP L+    G +K N AIV
Sbjct: 86  FANVLKELGVEKGDRVFIFMPRIPELYFALLGALK-NGAIV 125


>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational
           modification, protein turnover, chaperones].
          Length = 1174

 Score = 27.0 bits (60), Expect = 0.46
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 19  ANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII 61
            + +    EG G    I++   PL F   II PN     + +I
Sbjct: 841 IDAKYVFNEGNGPGAYIYVGSTPLYFFSAIIYPNSLSYNIYVI 883


>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
          Provisional.
          Length = 679

 Score = 23.6 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 19 ANVRKAVAEGRGDAI 33
          AN  +A+AEGRG A 
Sbjct: 79 ANFAEALAEGRGKAQ 93


>gnl|CDD|237330 PRK13279, arnT, 4-amino-4-deoxy-L-arabinose transferase;
           Provisional.
          Length = 552

 Score = 23.7 bits (52), Expect = 7.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 4   THILSIFRSMSFFMAANVRKAVAEGRGDAIPI 35
           T+IL  F  ++  MA         G   A+ I
Sbjct: 316 TYILPCFAPLAILMAHYAVDCAKNGNPRALRI 347


>gnl|CDD|224811 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
          modification, protein turnover, chaperones].
          Length = 318

 Score = 23.7 bits (52), Expect = 8.2
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 6  ILSIFRSMSFFMAANVRKAV---AEGRGDAIPIFLS 38
          ++        F A  + +AV    E     + +FL 
Sbjct: 25 LIDEMYKTGGFQARRLAEAVEILREMLESRVTVFLG 60


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.334    0.145    0.400 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,114,305
Number of extensions: 232058
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 13
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.4 bits)