RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11853
         (61 letters)



>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 221

 Score = 53.3 bits (128), Expect = 3e-11
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII 61
           + R M F + + +RKA+  G    I   LSE     +   +  P++A+++ + I
Sbjct: 80  LARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAI 133


>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 23.6 bits (51), Expect = 1.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 8/39 (20%)

Query: 18  AANVRK-----AVAEGRGDAIPIFLSEIPLLFKRGIIKP 51
           A NV K      +A G G   P    EIP L ++G+I+ 
Sbjct: 124 ARNVPKFGLAHLMALGLG---PWLAVEIPDLIQKGVIQH 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.145    0.400 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 204,854
Number of extensions: 6854
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.0 bits)