BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11854
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 76.6 bits (187), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 87 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFE 138
AGVVTTRAHVHY+VTE+G A L G++LR+RA ALINIA PD RE L + AFE
Sbjct: 371 AGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFE 422
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 42/69 (60%)
Query: 72 EHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREA 131
++G A + + A V T R V YVVTE+GIA L GK+LRQRA ALI IA PD RE
Sbjct: 365 KNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREE 424
Query: 132 LEKAAFERL 140
L K +R
Sbjct: 425 LTKHLRKRF 433
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
(Abft-2) From Porphyromonas Gingivalis. Northeast
Structural Genomics Consortium Target Pgr26
Length = 439
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 83 LRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 141
L++ A V T R V YVVTE+G+A L G TLRQRA AL IA PD R ALE+ R +
Sbjct: 373 LKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRFE 431
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 27/40 (67%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAH 95
GA V T R V YVVTE+G+A L G TLRQRA +T AH
Sbjct: 376 GACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAH 415
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 7 IATAQVNKYMPRTFGDALVHQSHFDFACQVD 37
+ A+VNK MP G+ L+H S +VD
Sbjct: 151 VVVAEVNKQMPFIGGENLIHISKLTHIIEVD 181
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 87 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFER 139
A V T+R YVVTE+GIA + GK+L+ RA ALINIA PD ++ L KA FE+
Sbjct: 381 AAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDEL-KAEFEK 432
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 7 IATAQVNKYMPRTFGDALVHQSHFD 31
I A+VN +P +GD VH S D
Sbjct: 150 IVLAEVNDQVPVVYGDTFVHVSEID 174
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 40.0 bits (92), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 89 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 136
V T R HY+VTE G L G + +RA +I +A PD R+ L +AA
Sbjct: 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAHPDFRDELTQAA 449
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 55 IGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAH 95
I V T R HY+VTE G L G + +RA + AH
Sbjct: 398 IDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAH 438
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 89 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 136
V T R HY+VTE G L G + +RA +I +A PD R+ L +AA
Sbjct: 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAHPDFRDELTQAA 449
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 55 IGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAH 95
I V T R HY+VTE G L G + +RA + AH
Sbjct: 398 IDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAH 438
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 96 VHYVVTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALEK 134
V +++E G+A L GK R+RAH +I+ PD+R L +
Sbjct: 419 VKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQ 458
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 22/70 (31%)
Query: 89 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALIN-----------------IAPPDHREA 131
+V TRA ++Y+ T++ L+GK +++RA LI+ + PPD REA
Sbjct: 64 LVQTRAILNYIATKYD---LYGKDMKERA--LIDMYTEGILDLTEMIGQLVLXPPDQREA 118
Query: 132 LEKAAFERLK 141
A +R K
Sbjct: 119 KTALAKDRTK 128
>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
pdb|3IK7|A Chain A, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|B Chain B, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|C Chain C, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|D Chain D, Human Glutathione Transferase A4-4 With Gsdhn
Length = 222
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGV 89
G +V TR+ +HY+ +H LFGK L++R +
Sbjct: 62 GMKLVQTRSILHYIADKHN---LFGKNLKERTLI 92
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 89 VVTTRAHVHYVVTEHGIAFLFGKTLRQR 116
+V TR+ +HY+ +H LFGK L++R
Sbjct: 65 LVQTRSILHYIADKHN---LFGKNLKER 89
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQ 115
G + TRA ++Y+ T++ L+GK +++RA ++ + +TE + G+ +
Sbjct: 61 GMKLAQTRAILNYIATKYD---LYGKDMKERA-LIDMYSEGILDLTE-----MIGQLV-- 109
Query: 116 RAHALINIAPPDHREALEKAAFERLK 141
+ PPD REA A +R K
Sbjct: 110 -------LCPPDQREAKTALAKDRTK 128
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQ 115
G + TRA ++Y+ T++ L+GK +++RA ++ + +TE + +
Sbjct: 61 GMKLAQTRAILNYIATKYD---LYGKDMKERA-LIDMYSEGILDLTEMIMQLV------- 109
Query: 116 RAHALINIAPPDHREALEKAAFERLK 141
I PPD +EA A +R K
Sbjct: 110 -------ICPPDQKEAKTALAKDRTK 128
>pdb|1EV4|A Chain A, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
Length = 221
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQ 115
G + TRA ++Y+ T++ L+GK +++RA ++ + +TE + +
Sbjct: 61 GMKLAQTRAILNYIATKYD---LYGKDMKERA-LIDMYSEGILDLTEMIMQLV------- 109
Query: 116 RAHALINIAPPDHREALEKAAFERLK 141
I PPD +EA A +R K
Sbjct: 110 -------ICPPDQKEAKTALAKDRTK 128
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 29.6 bits (65), Expect = 0.53, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 87 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 133
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 56 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQ 115
G + TRA ++Y+ T++ L+GK +++RA ++ + +TE + G+ +
Sbjct: 61 GMKLAQTRAILNYIATKYD---LYGKDMKERA-LIDMYSEGILDLTE-----MIGQLV-- 109
Query: 116 RAHALINIAPPDHREALEKAAFERLK 141
+ PPD REA A +R K
Sbjct: 110 -------LXPPDQREAKTALAKDRTK 128
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 87 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 133
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 87 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 133
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 87 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 133
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 87 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 133
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,685,679
Number of Sequences: 62578
Number of extensions: 115574
Number of successful extensions: 270
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 36
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)