Query psy11854
Match_columns 141
No_of_seqs 141 out of 1219
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03458 YgfH_subfam succinat 100.0 1.6E-37 3.4E-42 274.1 7.7 137 3-139 147-459 (485)
2 KOG2828|consensus 100.0 5.8E-33 1.3E-37 238.4 6.8 138 4-141 163-448 (454)
3 COG0427 ACH1 Acetyl-CoA hydrol 99.9 1.4E-26 3.1E-31 203.8 7.9 53 87-139 416-468 (501)
4 PF13336 AcetylCoA_hyd_C: Acet 99.9 1.1E-24 2.3E-29 168.1 4.0 55 82-136 100-154 (154)
5 TIGR01584 citF citrate lyase, 99.9 4.2E-23 9.1E-28 182.3 7.9 57 3-59 177-239 (492)
6 TIGR01110 mdcA malonate decarb 99.9 4.5E-23 9.9E-28 183.1 7.3 55 4-62 173-238 (543)
7 PF13336 AcetylCoA_hyd_C: Acet 97.9 1.2E-06 2.7E-11 67.9 -2.2 49 58-117 106-154 (154)
8 TIGR03458 YgfH_subfam succinat 97.4 3.9E-05 8.4E-10 68.7 -0.1 56 59-125 408-465 (485)
9 PF04223 CitF: Citrate lyase, 96.9 0.00072 1.6E-08 60.1 3.4 55 4-58 155-215 (466)
10 TIGR02428 pcaJ_scoB_fam 3-oxoa 96.2 0.0029 6.2E-08 50.8 1.9 44 86-134 156-199 (207)
11 COG3051 CitF Citrate lyase, al 96.1 0.038 8.3E-07 49.0 8.5 56 3-58 199-260 (513)
12 COG0427 ACH1 Acetyl-CoA hydrol 95.5 0.0055 1.2E-07 55.3 1.2 50 64-124 423-472 (501)
13 KOG2828|consensus 94.3 0.015 3.3E-07 51.4 0.6 74 38-122 370-448 (454)
14 TIGR01110 mdcA malonate decarb 90.9 0.096 2.1E-06 47.9 0.9 41 85-125 437-478 (543)
15 TIGR01584 citF citrate lyase, 85.8 0.4 8.7E-06 43.5 1.4 52 87-140 407-460 (492)
16 PF04512 Baculo_PEP_N: Baculov 70.0 1.4 3E-05 31.9 -0.1 28 95-122 53-80 (97)
17 PLN03220 uncharacterized prote 41.1 14 0.0003 27.2 1.0 47 88-141 32-79 (105)
18 PLN03219 uncharacterized prote 40.7 17 0.00037 26.8 1.4 45 88-141 36-81 (108)
19 PLN03090 auxin-responsive fami 40.3 14 0.00031 27.0 0.9 45 87-141 36-80 (104)
20 PF02519 Auxin_inducible: Auxi 40.1 17 0.00036 26.1 1.3 43 89-141 34-76 (100)
21 KOG1783|consensus 35.9 23 0.0005 24.6 1.4 25 12-36 51-75 (77)
22 PF11997 DUF3492: Domain of un 33.8 40 0.00086 27.9 2.8 39 92-136 193-235 (268)
23 COG4195 Phage-related replicat 30.9 51 0.0011 26.9 2.8 39 95-133 98-143 (208)
24 COG4273 Uncharacterized conser 26.0 31 0.00066 26.4 0.7 23 93-115 91-113 (135)
25 PF11663 Toxin_YhaV: Toxin wit 25.6 58 0.0012 25.1 2.2 20 4-23 90-111 (140)
26 PF08447 PAS_3: PAS fold; Int 25.5 81 0.0018 20.0 2.6 35 104-138 7-45 (91)
27 PF06754 PhnG: Phosphonate met 25.2 2.4E+02 0.0053 21.4 5.6 48 88-135 61-111 (146)
28 PF10281 Ish1: Putative stress 22.2 72 0.0016 18.5 1.7 13 128-140 26-38 (38)
29 PF07875 Coat_F: Coat F domain 21.8 58 0.0013 20.8 1.4 23 115-137 19-41 (64)
30 PF14407 Frankia_peptide: Ribo 21.7 32 0.0007 23.0 0.1 19 118-136 3-23 (61)
31 COG3323 Uncharacterized protei 20.6 1.2E+02 0.0027 22.4 3.0 42 85-127 52-94 (109)
No 1
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=100.00 E-value=1.6e-37 Score=274.08 Aligned_cols=137 Identities=24% Similarity=0.281 Sum_probs=114.5
Q ss_pred CCCCEEEEEeCCCCCccc---------------------------CCCccc--cCcccEEEeeCCCCCCCCCCCCChhhh
Q psy11854 3 WRTAIATAQVNKYMPRTF---------------------------GDALVH--QSHFDFACQVDGSLPLHPSKPPSPNEV 53 (141)
Q Consensus 3 ~r~~~VIaeVNp~MPrt~---------------------------Gd~~Ih--is~id~iVe~d~pL~~~~~~~~~~~~~ 53 (141)
.+|++||+|||++||||+ |++.|| +|+||++||+|+||+++|.++++++++
T Consensus 147 ~aAk~VIvEVN~~mP~~~~~~~~~~~~~~~p~~~~ip~~~~~~~~G~~~i~i~~s~vd~ive~~~pl~~~~~~~~~~~~~ 226 (485)
T TIGR03458 147 ELADKVIVEVNTWQPLELEGMHDIYEPGDPPHRRPIPITTPGDRIGTPYIQIDPDKIVAVVETNAPDRNSPFTPPDEVSQ 226 (485)
T ss_pred HhCCEEEEEECCCCChhhhccccccccCCCCcCccccccCccccCCCcceeCCHHHeEEEEEcCCCCccCCCCCcCHHHH
Confidence 468999999999999998 899999 779999999999999999999999999
Q ss_pred hcccee---ee----cC-------------------------Cc--e----eE---------------------------
Q psy11854 54 AIGAGV---VT----TR-------------------------AH--V----HY--------------------------- 68 (141)
Q Consensus 54 ~IG~~v---i~----D~-------------------------~~--~----h~--------------------------- 68 (141)
+||.++ |+ |+ ++ | ||
T Consensus 227 ~Ia~~va~~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~~~kdLgihtem~~d~~~~L~~~G~i~~~~v~~~~~g 306 (485)
T TIGR03458 227 KIAGHLIDFLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDSPFENLTMYTEVIQDSMLDLIDSGKLTFASATSLTLS 306 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcCCCCCceEEeeechHhHHHHHHCCCcccceEEEEEec
Confidence 999975 33 31 22 3 44
Q ss_pred ---------------------------------------------------EEcCC--C----------eeeeecCc---
Q psy11854 69 ---------------------------------------------------VVTEH--G----------IAFLFGKT--- 82 (141)
Q Consensus 69 ---------------------------------------------------vvt~~--G----------~~f~~G~~--- 82 (141)
|+++. | .||++|+.
T Consensus 307 ~~~~~~~~~~~d~~n~~~~~~p~~~tn~p~vi~~~~~vsiNsaievDL~Gqv~se~~~g~~~~sG~GGq~DF~rgA~~Si 386 (485)
T TIGR03458 307 PEALERFYANIDFYRDKIVLRPQEISNHPEIIRRLGVIAINTAIEADIYGNVNSTHVMGTKMMNGIGGSGDFARNAYLSI 386 (485)
T ss_pred HHHHHHHHhhhhhcCCcEEEeccceeCCHHHHhhCCeEEEehheEeccCceeeeecccCceEEecCccHHHHHHHHhhhh
Confidence 22321 1 77887751
Q ss_pred -----ccCC----------ccceeecCcccEEEeeceeeecCCCCHHHHHHHhH-hcCCCCCHHHHHHHHHHh
Q psy11854 83 -----LRQR----------AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAAFER 139 (141)
Q Consensus 83 -----l~~g----------a~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI-~iAhP~~R~~L~~~a~~~ 139 (141)
...| +.|+++|+|+||||||||+|+|||+|++|||++|| +||||+||++|+++|++.
T Consensus 387 ial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A~LrG~s~~eRa~~lI~~iAhP~fR~~L~~~~~~~ 459 (485)
T TIGR03458 387 FMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLADLRGLSPRERARAIIDNCAHPDYRDLLRDYYERA 459 (485)
T ss_pred EEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEEEecCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 1222 36889999999999999999999999999999999 899999999999999754
No 2
>KOG2828|consensus
Probab=99.97 E-value=5.8e-33 Score=238.38 Aligned_cols=138 Identities=46% Similarity=0.625 Sum_probs=116.6
Q ss_pred CCCEEEEEeCCCCCcccCCCccccCcccEEEeeCC--CCCCCCCCCCChhhhhccce----eeec---------------
Q psy11854 4 RTAIATAQVNKYMPRTFGDALVHQSHFDFACQVDG--SLPLHPSKPPSPNEVAIGAG----VVTT--------------- 62 (141)
Q Consensus 4 r~~~VIaeVNp~MPrt~Gd~~Ihis~id~iVe~d~--pL~~~~~~~~~~~~~~IG~~----vi~D--------------- 62 (141)
-++++|||||+.||||+|++.||+|.+|++|+.+. .+...+..+.++.+++||.- ++.+
T Consensus 163 ~skkIIa~VNt~mPrt~G~~~Ihvshf~~~v~v~~~~~~~q~~~~p~~e~ek~IgkviaenLv~ngatLQ~GIG~Ipdav 242 (454)
T KOG2828|consen 163 NSKKIIAEVNTAMPRTEGDTTIHVSHFKVMVIVEDPIADQQPGNGPQDETEKAIGKVIAENLVKNGATLQSGIGNIPDAV 242 (454)
T ss_pred ccchheehhccCCCCcCCCcceecChhHeeeEeccccccccCCCCCcchHHHHHHHHHHhhhccCCchhhhccccchHHH
Confidence 47899999999999999999999999999999988 55666778999999999983 3333
Q ss_pred ----CCceeE----------------------------------------------------------------------
Q psy11854 63 ----RAHVHY---------------------------------------------------------------------- 68 (141)
Q Consensus 63 ----~~~~h~---------------------------------------------------------------------- 68 (141)
.+|||+
T Consensus 243 l~A~~~hKdLgvhtem~~d~vl~l~~~~~~~~s~~~~~~g~~s~~~~~k~f~~~~nnn~~i~~~~~~~~n~~~ivrr~~~ 322 (454)
T KOG2828|consen 243 LAALSNHKDLGVHTEMFQDGVLDLFEKGCLTNSKKTSHRGVSSFKGGDKAFYNYLNNNPRIELRPQVFSNNPEIVRRNPK 322 (454)
T ss_pred HHhccccccceehHHHhhcchHHHHHhccchhhhhhhccCccccchhhHHHHhhhcCCceeeeccccccCCHHHHhhccc
Confidence 233322
Q ss_pred ---------------EE---------cCCC--eeeeecC---------------------------cccCCccceeecCc
Q psy11854 69 ---------------VV---------TEHG--IAFLFGK---------------------------TLRQRAGVVTTRAH 95 (141)
Q Consensus 69 ---------------vv---------t~~G--~~f~~G~---------------------------~l~~ga~v~~~r~~ 95 (141)
++ +++| +||+||+ .|.+|++|+|+|+|
T Consensus 323 ~~ains~ve~dl~~~~~s~~vg~r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gsgVvttrah 402 (454)
T KOG2828|consen 323 VTAINSPVEVDLTGQANSDSVGSRFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAH 402 (454)
T ss_pred ceeeccceeeeccccccccchhhHHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccCceeeeccc
Confidence 00 1123 8899884 47799999999999
Q ss_pred ccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHHHHHHhcC
Q psy11854 96 VHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 141 (141)
Q Consensus 96 ~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~~a~~~~~ 141 (141)
+||||||||+|+|||||.+|||.+||.|+||..|+.|+++|+++++
T Consensus 403 ~~y~VTEhGiA~L~Gks~rqRayElI~i~~p~dre~L~k~afdr~k 448 (454)
T KOG2828|consen 403 LDYLVTEHGIADLWGKSPRQRAYELIQICAPPDREALLKAAFDRAK 448 (454)
T ss_pred eeEEEecccHHHHhCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998864
No 3
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=99.93 E-value=1.4e-26 Score=203.79 Aligned_cols=53 Identities=47% Similarity=0.457 Sum_probs=49.7
Q ss_pred ccceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHHHHHHh
Q psy11854 87 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFER 139 (141)
Q Consensus 87 a~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~~a~~~ 139 (141)
+.|+++|.|+||||||||+|||||++.+|||++||+||||+||++|.+++++.
T Consensus 416 ~hVd~~rhdvdvvVTE~GiAdLRGlsp~ERA~~iI~~AHPdyR~~L~ey~~ka 468 (501)
T COG0427 416 SHVDHTRHDVDVVVTEYGIADLRGLSPRERAAAIIECAHPDYRPWLEEYAEKA 468 (501)
T ss_pred CCccccccceeEEEEeechhhhcCCCHHHHHHHHHHhcCcchHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999753
No 4
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=99.90 E-value=1.1e-24 Score=168.14 Aligned_cols=55 Identities=53% Similarity=0.701 Sum_probs=46.1
Q ss_pred cccCCccceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHHHH
Q psy11854 82 TLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 136 (141)
Q Consensus 82 ~l~~ga~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~~a 136 (141)
.|++|+.++++|+|+||||||||+|+|||+|++|||++||+||||+||++|+++|
T Consensus 100 ~l~~g~~vt~~r~dvd~VVTEyGvA~LrG~s~~eRA~aLI~iAHP~fR~~L~~~A 154 (154)
T PF13336_consen 100 RLPPGAPVTTPRHDVDYVVTEYGVADLRGKSIRERAEALISIAHPDFRDELREEA 154 (154)
T ss_dssp S-STTSSESB-TTT-SEEEETTEEEE-TT--HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred eecCCCCcccCcccCCEEEcCCEEEEeCCCCHHHHHHHHHHccCccHHHHHHhhC
Confidence 4778889999999999999999999999999999999999999999999999987
No 5
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=99.88 E-value=4.2e-23 Score=182.29 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCCEEEEEeCCCCCcccCCCccccCcccEEEeeCCC-CC-CCC----CCCCChhhhhcccee
Q psy11854 3 WRTAIATAQVNKYMPRTFGDALVHQSHFDFACQVDGS-LP-LHP----SKPPSPNEVAIGAGV 59 (141)
Q Consensus 3 ~r~~~VIaeVNp~MPrt~Gd~~Ihis~id~iVe~d~p-L~-~~~----~~~~~~~~~~IG~~v 59 (141)
..|++||+|+|++|||++|+..||+++||++||.|.| ++ +++ ..+++|++++||.++
T Consensus 177 ~~A~kVIaevn~~vP~p~g~~~Ih~s~VD~VVEvd~~g~p~~i~~g~~r~t~~p~e~~IA~~v 239 (492)
T TIGR01584 177 QYADKVVAITDSLVPYPNTPASIKQTQVDYVVKVDAVGDPKKIGSGATRFTKDPKELLIAKMA 239 (492)
T ss_pred HhCCEEEEEECCCCCCCCCCCccChhheEEEEEeCCCCChhhcccCCCCCCCCHHHHHHHHHH
Confidence 4589999999999999999999999999999999988 66 565 457899999999963
No 6
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=99.88 E-value=4.5e-23 Score=183.11 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCEEEEEeCC---CCCcccCCCccccCcccEEEeeCCC-----CCCCCCCCCChhhhhcccee---eec
Q psy11854 4 RTAIATAQVNK---YMPRTFGDALVHQSHFDFACQVDGS-----LPLHPSKPPSPNEVAIGAGV---VTT 62 (141)
Q Consensus 4 r~~~VIaeVNp---~MPrt~Gd~~Ihis~id~iVe~d~p-----L~~~~~~~~~~~~~~IG~~v---i~D 62 (141)
++++||+|||+ +|||| .||+++||++||.+.| |++.+++++++++.+||.++ |.|
T Consensus 173 ~agiVIVEVNeIVd~~PrV----~IP~s~VD~VVEa~~P~~iepL~e~D~a~ise~~~~ia~~v~~~I~d 238 (543)
T TIGR01110 173 RDGIVIAQVNELVDKLPRV----DIPASWVDFVIESPKPFYIEPLFTRDPANITDVQVLMAMMAIKGIYA 238 (543)
T ss_pred cCCEEEEEECccCCCCCcE----EcChhheEEEEEcCCCcccccccCCCcccCCHHHHHHHHHHHhhCcC
Confidence 35699999999 99999 8999999999999988 99999999999999999975 555
No 7
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=97.86 E-value=1.2e-06 Score=67.91 Aligned_cols=49 Identities=47% Similarity=0.634 Sum_probs=38.5
Q ss_pred eeeecCCceeEEEcCCCeeeeecCcccCCccceeecCcccEEEeeceeeecCCCCHHHHH
Q psy11854 58 GVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA 117 (141)
Q Consensus 58 ~vi~D~~~~h~vvt~~G~~f~~G~~l~~ga~v~~~r~~~~~vVTEyG~a~L~g~sl~erA 117 (141)
+++..+++.|+||||||++.|+|.++++++..+|..+||| |+..|++.|
T Consensus 106 ~vt~~r~dvd~VVTEyGvA~LrG~s~~eRA~aLI~iAHP~-----------fR~~L~~~A 154 (154)
T PF13336_consen 106 PVTTPRHDVDYVVTEYGVADLRGKSIRERAEALISIAHPD-----------FRDELREEA 154 (154)
T ss_dssp SESB-TTT-SEEEETTEEEE-TT--HHHHHHHHHHTS-HH-----------HHHHHHHHH
T ss_pred CcccCcccCCEEEcCCEEEEeCCCCHHHHHHHHHHccCcc-----------HHHHHHhhC
Confidence 4555688889999999999999999999999999999999 888887765
No 8
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=97.37 E-value=3.9e-05 Score=68.71 Aligned_cols=56 Identities=30% Similarity=0.315 Sum_probs=48.6
Q ss_pred eeecCCceeEEEcCCCeeeeecCcccCCcccee-ecCcccEEEeeceeeecCCCCHHHHHHHh-HhcCC
Q psy11854 59 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVT-TRAHVHYVVTEHGIAFLFGKTLRQRAHAL-INIAP 125 (141)
Q Consensus 59 vi~D~~~~h~vvt~~G~~f~~G~~l~~ga~v~~-~r~~~~~vVTEyG~a~L~g~sl~erA~~l-I~iAh 125 (141)
++..+++.|+||||||.+.|+|.+.+++|..+| ..+||+ |+..|.+.|+.- .+-.|
T Consensus 408 vt~~r~dv~~vVTE~G~A~LrG~s~~eRa~~lI~~iAhP~-----------fR~~L~~~~~~~~~~~~~ 465 (485)
T TIGR03458 408 VDHTEHDVMVIVTEQGLADLRGLSPRERARAIIDNCAHPD-----------YRDLLRDYYERALAGGGQ 465 (485)
T ss_pred cCCchhhCCEEEecCEEEEecCCCHHHHHHHHHHHcCCcc-----------hHHHHHHHHHHHhhcCCC
Confidence 455688889999999999999999999999999 999999 999998888754 33444
No 9
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=96.94 E-value=0.00072 Score=60.11 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCEEEEEeCCCCCcccCCCccccCcccEEEeeCCC-----CCC-CCCCCCChhhhhccce
Q psy11854 4 RTAIATAQVNKYMPRTFGDALVHQSHFDFACQVDGS-----LPL-HPSKPPSPNEVAIGAG 58 (141)
Q Consensus 4 r~~~VIaeVNp~MPrt~Gd~~Ihis~id~iVe~d~p-----L~~-~~~~~~~~~~~~IG~~ 58 (141)
.|+.||+--.--+|+..-...|...++||+|+.|.- +.. ......+|.+..|+..
T Consensus 155 yA~~VV~iTD~Lv~yP~~p~sI~q~~VDyVV~Vd~IGDP~kI~sGatr~T~~P~~L~IA~~ 215 (466)
T PF04223_consen 155 YADKVVAITDNLVPYPNTPASIPQTQVDYVVVVDSIGDPAKIVSGATRITKDPRELLIAEY 215 (466)
T ss_dssp H-SEEEEEESSEE-SS-SS-SB-GGG-SEEEE-S-SC-CHHHCS--------HHHHHHHHH
T ss_pred hcCcEEEEecCCCCCCCCCCCcccceeeEEEEeccccChhhcccCCccccCChHHHHHHHH
Confidence 467888888777888887788999999999998852 111 1123456888888874
No 10
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=96.17 E-value=0.0029 Score=50.78 Aligned_cols=44 Identities=23% Similarity=0.126 Sum_probs=31.9
Q ss_pred CccceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHH
Q psy11854 86 RAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEK 134 (141)
Q Consensus 86 ga~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~ 134 (141)
+..++++|+++++||||||+++|+++. ..|++++-.--.+++++
T Consensus 156 ~~~~~t~~~~v~~vVTe~gV~~l~~~~-----l~L~~~~pgv~~~dv~~ 199 (207)
T TIGR02428 156 CTLPLTGAGCVDRIVTELAVFEVTDGG-----LILRELAPGVTVEELQA 199 (207)
T ss_pred CCCccCCCCcccEEECCCEEEEEeCCc-----EEEEEECCCCCHHHHHH
Confidence 345578899999999999999999772 56777733334445543
No 11
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=96.06 E-value=0.038 Score=49.03 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCCEEEEEeCCCCCcccCCCccccCcccEEEeeCC--CCCCCCC----CCCChhhhhccce
Q psy11854 3 WRTAIATAQVNKYMPRTFGDALVHQSHFDFACQVDG--SLPLHPS----KPPSPNEVAIGAG 58 (141)
Q Consensus 3 ~r~~~VIaeVNp~MPrt~Gd~~Ihis~id~iVe~d~--pL~~~~~----~~~~~~~~~IG~~ 58 (141)
+-|+.|++--..-+|+.+--..|..+++|++|..|. ....... -..+|.|..|+..
T Consensus 199 ~yAd~VV~lTe~lv~yPn~PaSI~Q~qVD~vV~vd~vGdp~kIg~gAtR~t~nPreLlIA~~ 260 (513)
T COG3051 199 QYADQVVMLTEELVPYPNNPASIAQDQVDLVVQVDAVGDPKKIGAGATRMTTNPRELLIARS 260 (513)
T ss_pred hhcceEEEehhhccCCCCCCcccccccceEEEEEeccCChhhccCCceecCCChHHHHHHHH
Confidence 457788888777888888888999999999999874 1111111 2346777777774
No 12
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=95.54 E-value=0.0055 Score=55.30 Aligned_cols=50 Identities=34% Similarity=0.324 Sum_probs=44.2
Q ss_pred CceeEEEcCCCeeeeecCcccCCccceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcC
Q psy11854 64 AHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIA 124 (141)
Q Consensus 64 ~~~h~vvt~~G~~f~~G~~l~~ga~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iA 124 (141)
++.|+||||+|.+.|||.+..++|.++|.-+||| |+.-|.|.++..-.+.
T Consensus 423 hdvdvvVTE~GiAdLRGlsp~ERA~~iI~~AHPd-----------yR~~L~ey~~ka~~~~ 472 (501)
T COG0427 423 HDVDVVVTEYGIADLRGLSPRERAAAIIECAHPD-----------YRPWLEEYAEKAGLLP 472 (501)
T ss_pred cceeEEEEeechhhhcCCCHHHHHHHHHHhcCcc-----------hHHHHHHHHHHhcccc
Confidence 4447799999999999999999999999999999 9999999999876653
No 13
>KOG2828|consensus
Probab=94.29 E-value=0.015 Score=51.41 Aligned_cols=74 Identities=39% Similarity=0.501 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCChhhh-----hccceeeecCCceeEEEcCCCeeeeecCcccCCccceeecCcccEEEeeceeeecCCCC
Q psy11854 38 GSLPLHPSKPPSPNEV-----AIGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKT 112 (141)
Q Consensus 38 ~pL~~~~~~~~~~~~~-----~IG~~vi~D~~~~h~vvt~~G~~f~~G~~l~~ga~v~~~r~~~~~vVTEyG~a~L~g~s 112 (141)
.|+..+|...+.-..+ +-|++|+..+.|.|++|||+|.+.++|.+.++++.-+|...+++ -+++
T Consensus 370 kpiialps~t~kGqskIVP~l~~gsgVvttrah~~y~VTEhGiA~L~Gks~rqRayElI~i~~p~-----------dre~ 438 (454)
T KOG2828|consen 370 KPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAHLDYLVTEHGIADLWGKSPRQRAYELIQICAPP-----------DREA 438 (454)
T ss_pred CceeecCccCCCCceeecccccccCceeeeccceeEEEecccHHHHhCCCHHHHHHHHHHhhCCc-----------hHHH
Confidence 3555555544433322 34567788899999999999999999999999999999888888 7788
Q ss_pred HHHHHHHhHh
Q psy11854 113 LRQRAHALIN 122 (141)
Q Consensus 113 l~erA~~lI~ 122 (141)
|...|-..+.
T Consensus 439 L~k~afdr~k 448 (454)
T KOG2828|consen 439 LLKAAFDRAK 448 (454)
T ss_pred HHHHHHHHHh
Confidence 7666555443
No 14
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=90.87 E-value=0.096 Score=47.88 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=39.0
Q ss_pred CCccceeecCcccEEEeeceeeec-CCCCHHHHHHHhHhcCC
Q psy11854 85 QRAGVVTTRAHVHYVVTEHGIAFL-FGKTLRQRAHALINIAP 125 (141)
Q Consensus 85 ~ga~v~~~r~~~~~vVTEyG~a~L-~g~sl~erA~~lI~iAh 125 (141)
+|++|+|+|+|++|||||||+|+| +|+|++|||++||+||-
T Consensus 437 ~g~pVt~~r~Dv~~VVTE~GiA~L~~g~s~~ERa~ali~IAg 478 (543)
T TIGR01110 437 PLAPVMIYGDDVTHIVTEEGIAYLYKCRSLEERMQAIRGVAG 478 (543)
T ss_pred CCCceEeccCCcCEEeccHhHhHHhhCCCHHHHHHHHHHHhC
Confidence 488999999999999999999999 99999999999999873
No 15
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=85.76 E-value=0.4 Score=43.53 Aligned_cols=52 Identities=29% Similarity=0.209 Sum_probs=42.2
Q ss_pred ccceeecCcccEEEeeceee-ecCCCCHHHHHH-HhHhcCCCCCHHHHHHHHHHhc
Q psy11854 87 AGVVTTRAHVHYVVTEHGIA-FLFGKTLRQRAH-ALINIAPPDHREALEKAAFERL 140 (141)
Q Consensus 87 a~v~~~r~~~~~vVTEyG~a-~L~g~sl~erA~-~lI~iAhP~~R~~L~~~a~~~~ 140 (141)
+.|||||+++||||||||+| +|+|++++||++ +. .+-. .-=++|.+.|+...
T Consensus 407 ~~VtTpr~~Vd~VVTEyGIAvnlrg~~l~eR~~~~~-~l~~-~~i~~l~~~a~~~~ 460 (492)
T TIGR01584 407 TTVITPGESIDVLVTEIGIAINPKRKDLIEKLSNKP-GIPL-YTIEELQEIAEEIT 460 (492)
T ss_pred CCEECChhhCCEEEccCEEecCCCCCCHHHHHhhcC-CCCc-ccHHHHHHHHHHhh
Confidence 47999999999999999999 999999999999 42 4422 23468888887654
No 16
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=70.05 E-value=1.4 Score=31.90 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.1
Q ss_pred cccEEEeeceeeecCCCCHHHHHHHhHh
Q psy11854 95 HVHYVVTEHGIAFLFGKTLRQRAHALIN 122 (141)
Q Consensus 95 ~~~~vVTEyG~a~L~g~sl~erA~~lI~ 122 (141)
.--+.||+||++.|.|++..+++-.+-.
T Consensus 53 s~K~Fit~lGv~~L~~r~~~~~~d~l~~ 80 (97)
T PF04512_consen 53 SNKLFITALGVGVLCNRTNSKLADYLAN 80 (97)
T ss_pred CceeeeeHHHHHHHHhhcchHHHHHHHH
Confidence 3458999999999999998887776654
No 17
>PLN03220 uncharacterized protein; Provisional
Probab=41.06 E-value=14 Score=27.21 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=29.4
Q ss_pred cceeecCcccEEEeeceeeecCCCCHHHHH-HHhHhcCCCCCHHHHHHHHHHhcC
Q psy11854 88 GVVTTRAHVHYVVTEHGIAFLFGKTLRQRA-HALINIAPPDHREALEKAAFERLK 141 (141)
Q Consensus 88 ~v~~~r~~~~~vVTEyG~a~L~g~sl~erA-~~lI~iAhP~~R~~L~~~a~~~~~ 141 (141)
...+++.++-+.|.|.|- .-++|- --+-.+.||-||+ |+++|++-||
T Consensus 32 ~~~VPkGh~aVyVGe~~~------~e~kRFVVPv~yL~hP~F~~-LL~~AeEEfG 79 (105)
T PLN03220 32 SDHVPKGHVAVYVGEQIE------MEKKRFVVPISFLNHPSFKE-FLSRAEEEFG 79 (105)
T ss_pred cCCCCCCeEEEEECCCCC------ccceEEEEEHHHcCChHHHH-HHHHHHHHhC
Confidence 345689999999977531 101121 1233478999995 5577777765
No 18
>PLN03219 uncharacterized protein; Provisional
Probab=40.72 E-value=17 Score=26.84 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=27.9
Q ss_pred cceeecCcccEEEeeceeeecCCCCHHHHH-HHhHhcCCCCCHHHHHHHHHHhcC
Q psy11854 88 GVVTTRAHVHYVVTEHGIAFLFGKTLRQRA-HALINIAPPDHREALEKAAFERLK 141 (141)
Q Consensus 88 ~v~~~r~~~~~vVTEyG~a~L~g~sl~erA-~~lI~iAhP~~R~~L~~~a~~~~~ 141 (141)
...+++.++-+.|.|.+ . ++|- --+-.+.||-||+ |+++|++-||
T Consensus 36 ~~~vpkGh~aVYVG~~~-------E-~kRFvVPi~yL~hP~F~~-LL~~AeEEfG 81 (108)
T PLN03219 36 SGLVPKGHVAVYVGEQM-------E-KKRFVVPISYLNHPLFRE-FLNRAEEECG 81 (108)
T ss_pred CCCCCCCeEEEEECCCC-------C-ceEEEEEHHHcCChHHHH-HHHHHHHHhC
Confidence 34568888888886621 0 1121 1233488999995 5577777665
No 19
>PLN03090 auxin-responsive family protein; Provisional
Probab=40.32 E-value=14 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=27.9
Q ss_pred ccceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHHHHHHhcC
Q psy11854 87 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 141 (141)
Q Consensus 87 a~v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~~a~~~~~ 141 (141)
.+..+++.++-+.|-|.. +.-.-.+-.+.||-||+ |++.|.+-||
T Consensus 36 ~~~~vpkG~~aVyVG~~~---------~RfvVp~~~L~hP~F~~-LL~~aeeEfG 80 (104)
T PLN03090 36 LPLDVPKGHFPVYVGENR---------SRYIVPISFLTHPEFQS-LLQQAEEEFG 80 (104)
T ss_pred CCCCCCCCcEEEEECCCC---------EEEEEEHHHcCCHHHHH-HHHHHHHHhC
Confidence 344568899888886521 11112333488999995 5577776664
No 20
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=40.09 E-value=17 Score=26.13 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=25.2
Q ss_pred ceeecCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCCCHHHHHHHHHHhcC
Q psy11854 89 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 141 (141)
Q Consensus 89 v~~~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~~R~~L~~~a~~~~~ 141 (141)
..++++++-+.|= ++-+.-.--+-.+.||-||+-| ++|++-||
T Consensus 34 ~~vp~G~~~VyVG---------~~~~Rfvvp~~~L~hp~f~~LL-~~aeeEfG 76 (100)
T PF02519_consen 34 SDVPKGHFAVYVG---------EERRRFVVPVSYLNHPLFQELL-EQAEEEFG 76 (100)
T ss_pred CCCCCCeEEEEeC---------ccceEEEechHHcCchhHHHHH-HHHhhhcC
Confidence 4456888877773 3222112223337899999555 66666565
No 21
>KOG1783|consensus
Probab=35.91 E-value=23 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred eCCCCCcccCCCccccCcccEEEee
Q psy11854 12 VNKYMPRTFGDALVHQSHFDFACQV 36 (141)
Q Consensus 12 VNp~MPrt~Gd~~Ihis~id~iVe~ 36 (141)
+|-+.|+.+||.+|.=+.|++|-+.
T Consensus 51 ~ngql~n~ygdaFirGnnVlyIs~~ 75 (77)
T KOG1783|consen 51 VNGQLKNKYGDAFIRGNNVLYISTQ 75 (77)
T ss_pred hcCcccccccceeeccccEEEEEec
Confidence 5889999999999999999998764
No 22
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=33.79 E-value=40 Score=27.91 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=28.0
Q ss_pred ecCcccEEEeeceeeecCCCCHHHHHHHhHhc--C--CCCCHHHHHHHH
Q psy11854 92 TRAHVHYVVTEHGIAFLFGKTLRQRAHALINI--A--PPDHREALEKAA 136 (141)
Q Consensus 92 ~r~~~~~vVTEyG~a~L~g~sl~erA~~lI~i--A--hP~~R~~L~~~a 136 (141)
-+...-+++||+|| -++||-.+|+.- . -+.+|+-+.+..
T Consensus 193 ~~~g~P~lLTEHGI------Y~RER~~ei~~a~w~~~~~~~r~~wi~~f 235 (268)
T PF11997_consen 193 YRYGRPFLLTEHGI------YTREREIEILQADWIWESPYVRDLWIRFF 235 (268)
T ss_pred HHhCCCEEEecCCc------cHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 37778899999999 789999999762 1 245666555443
No 23
>COG4195 Phage-related replication protein [General function prediction only]
Probab=30.95 E-value=51 Score=26.91 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=33.8
Q ss_pred cccEEEeeceeee------cCCCCHHHHHHHhHh-cCCCCCHHHHH
Q psy11854 95 HVHYVVTEHGIAF------LFGKTLRQRAHALIN-IAPPDHREALE 133 (141)
Q Consensus 95 ~~~~vVTEyG~a~------L~g~sl~erA~~lI~-iAhP~~R~~L~ 133 (141)
+.||+|.=+|.++ |-|-+-+++|..|.. +-+|-|+.+|.
T Consensus 98 ~h~~vis~HGy~~~~~~~~lvGG~dR~~aa~i~~~L~~aGF~a~L~ 143 (208)
T COG4195 98 DHDYVISLHGYADIESKQTLVGGTDRELAAHIARALQLAGFSAELA 143 (208)
T ss_pred cccEEEEeccccCCCCceeeecCccHHHHHHHHHHHhhCCccHHhh
Confidence 4499999999999 778888999998877 88999998885
No 24
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=26.05 E-value=31 Score=26.43 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.9
Q ss_pred cCcccEEEeeceeeecCCCCHHH
Q psy11854 93 RAHVHYVVTEHGIAFLFGKTLRQ 115 (141)
Q Consensus 93 r~~~~~vVTEyG~a~L~g~sl~e 115 (141)
+.|+++++||+|+..-++..+++
T Consensus 91 ~~D~~l~itdlGikK~~~~D~~~ 113 (135)
T COG4273 91 QADVHLTITDLGIKKTYPSDCKD 113 (135)
T ss_pred ceeEEEEehhcccccCCCCCCCH
Confidence 67999999999999988887654
No 25
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.58 E-value=58 Score=25.14 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.0
Q ss_pred CCC-EEEEEeC-CCCCcccCCC
Q psy11854 4 RTA-IATAQVN-KYMPRTFGDA 23 (141)
Q Consensus 4 r~~-~VIaeVN-p~MPrt~Gd~ 23 (141)
.++ +|+|.|| .+++|.+|+.
T Consensus 90 ~skiIv~aWvNDe~tlR~ygsk 111 (140)
T PF11663_consen 90 ESKIIVYAWVNDEQTLRAYGSK 111 (140)
T ss_pred ccCEEEEEEeCCCcchhhhccC
Confidence 455 7889999 7799999964
No 26
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=25.48 E-value=81 Score=19.97 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred eeeecCCCCHHHH----HHHhHhcCCCCCHHHHHHHHHH
Q psy11854 104 GIAFLFGKTLRQR----AHALINIAPPDHREALEKAAFE 138 (141)
Q Consensus 104 G~a~L~g~sl~er----A~~lI~iAhP~~R~~L~~~a~~ 138 (141)
++..|+|.+..+- ...+....||+.|+.+.+...+
T Consensus 7 ~~~~i~G~~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~ 45 (91)
T PF08447_consen 7 NFYEIFGYSPEEIGKPDFEEWLERIHPDDRERVRQAIQQ 45 (91)
T ss_dssp HHHHHHTS-HHHHTCBEHHHHHHHB-TTTHHHHHHHHHH
T ss_pred HHHHHhCCCHHHhccCCHHHHHhhcCHHHHHHHHHHHHH
Confidence 3445667766443 1125667799999999776654
No 27
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=25.23 E-value=2.4e+02 Score=21.39 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=35.5
Q ss_pred cceeecCcccEEEeeceeeecCCCCH-HHHHHHhHh--cCCCCCHHHHHHH
Q psy11854 88 GVVTTRAHVHYVVTEHGIAFLFGKTL-RQRAHALIN--IAPPDHREALEKA 135 (141)
Q Consensus 88 ~v~~~r~~~~~vVTEyG~a~L~g~sl-~erA~~lI~--iAhP~~R~~L~~~ 135 (141)
.++++|..+.+---+.|.+.+-|.+. ..++.++++ ..+|..++++.++
T Consensus 61 Ev~VTr~~V~l~~g~~G~~~v~G~d~~~A~~~Av~DAllq~~~~~~~~~~~ 111 (146)
T PF06754_consen 61 EVTVTRCAVRLEDGTVGYGYVLGRDKRHAELAAVIDALLQAPLPHAELWEA 111 (146)
T ss_pred eEEEEEEEEEeCCCCEEEEEEcCCCHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 67778888774434689999999996 345557777 6689988888654
No 28
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.16 E-value=72 Score=18.51 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHhc
Q psy11854 128 HREALEKAAFERL 140 (141)
Q Consensus 128 ~R~~L~~~a~~~~ 140 (141)
-|++|++.|++.+
T Consensus 26 ~rd~Ll~~~k~~y 38 (38)
T PF10281_consen 26 TRDELLKLAKKNY 38 (38)
T ss_pred CHHHHHHHHHHhC
Confidence 5999999998764
No 29
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=21.82 E-value=58 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.8
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHH
Q psy11854 115 QRAHALINIAPPDHREALEKAAF 137 (141)
Q Consensus 115 erA~~lI~iAhP~~R~~L~~~a~ 137 (141)
.-+.++.+.++|++|+.|.....
T Consensus 19 ~y~~a~~E~~np~lR~~l~~~~~ 41 (64)
T PF07875_consen 19 NYATAALECANPELRQILQQILN 41 (64)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
Confidence 34557778999999999977654
No 30
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=21.75 E-value=32 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHhHh--cCCCCCHHHHHHHH
Q psy11854 118 HALIN--IAPPDHREALEKAA 136 (141)
Q Consensus 118 ~~lI~--iAhP~~R~~L~~~a 136 (141)
+.+|. +..|+||.+|+...
T Consensus 3 e~lIgrAv~D~~FRqqllad~ 23 (61)
T PF14407_consen 3 ERLIGRAVTDEAFRQQLLADP 23 (61)
T ss_pred HHHHHHHHcCHHHHHHHhcCH
Confidence 34555 77999998886543
No 31
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=1.2e+02 Score=22.37 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCccceee-cCcccEEEeeceeeecCCCCHHHHHHHhHhcCCCC
Q psy11854 85 QRAGVVTT-RAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPD 127 (141)
Q Consensus 85 ~ga~v~~~-r~~~~~vVTEyG~a~L~g~sl~erA~~lI~iAhP~ 127 (141)
+||..++. +..+ -.|+|-=+--..-+++++++..+|..|||=
T Consensus 52 egAnP~iGevgk~-e~v~E~kiE~v~~~~~~~~v~~~ik~aHPY 94 (109)
T COG3323 52 EGANPFIGEVGKL-EFVAEVKIEFVVPAELRAAVLSAIKKAHPY 94 (109)
T ss_pred CCCCCcccccceE-EeeeeeEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 34444443 2222 356677777777889999999999999993
Done!