RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11854
(141 letters)
>gnl|CDD|205516 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/transferase
C-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 152
Score = 92.5 bits (231), Expect = 6e-25
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 82 TLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEK 134
TL A V T R V YVVTE+GIA L GK+LR+RA ALI+IA PD R+ L +
Sbjct: 100 TLSPGAHVTTPRHDVDYVVTEYGIADLRGKSLRERARALISIAHPDFRDELLE 152
>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and
conversion].
Length = 501
Score = 63.6 bits (155), Expect = 1e-12
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 87 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 136
+ V TR V VVTE+GIA L G + R+RA A+I A PD+R LE+ A
Sbjct: 416 SHVDHTRHDVDVVVTEYGIADLRGLSPRERAAAIIECAHPDYRPWLEEYA 465
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 57.5 bits (139), Expect = 1e-10
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 82 TLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 136
TL + V TRA+ HYVVTE+G L G + Q+A ALI+IA PD R+ L K A
Sbjct: 380 TLHNGSIVTDTRANTHYVVTEYGKVNLKGLSTWQKAEALISIAHPDFRDELIKEA 434
>gnl|CDD|234217 TIGR03458, YgfH_subfam, succinate CoA transferase. This family of
CoA transferases includes enzymes catalyzing at least
two related but distinct activities. The E. coli YgfH
protein has been characterized as a
propionyl-CoA:succinate CoA transferase where it appears
to be involved in a pathway for the decarboxylation of
succinate to propionate. The Clostridium kluyveri CAT1
protein has been characterized as a acetyl-CoA:succinate
CoA transferase and is believed to be involved in
anaerobic succinate degradation. The
propionate:succinate transferase activity has been
reported in the propionic acid fermentation of
propionibacterium species where it is distinct from the
coupled activities of distinct nucleotide-triphosphate
dependent succinate and propionate/acetate CoA
transferases (as inferred from activity in the absence
of NTPs). The family represented by this model includes
a member from Propionibacterium acnes KPA171202 which is
likely to be responsible for this activity. A closely
related clade not included in this family are the Ach1p
proteins of fungi which are acetyl-CoA hydrolases. This
name has been applied to many of the proteins modeled by
This model, possibly erroneously.
Length = 485
Score = 41.5 bits (98), Expect = 4e-05
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 96 VHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAAFER 139
V +VTE G+A L G + R+RA A+I N A PD+R+ L +ER
Sbjct: 415 VMVIVTEQGLADLRGLSPRERARAIIDNCAHPDYRDLLR-DYYER 458
Score = 28.8 bits (65), Expect = 0.95
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 66 VHYVVTEHGIAFLFGKTLRQRAGVVTTR-AHVHY 98
V +VTE G+A L G + R+RA + AH Y
Sbjct: 415 VMVIVTEQGLADLRGLSPRERARAIIDNCAHPDY 448
>gnl|CDD|218121 pfam04512, Baculo_PEP_N, Baculovirus polyhedron envelope protein,
PEP, N terminus. Polyhedra are large crystalline
occlusion bodies containing nucleopolyhedrovirus
virions, and surrounded by an electron-dense structure
called the polyhedron envelope or polyhedron calyx. The
polyhedron envelope (associated) protein PEP is thought
to be an integral part of the polyhedron envelope. PEP
is concentrated at the surface of polyhedra, and is
thought to be important for the proper formation of the
periphery of polyhedra. It is thought that PEP may
stabilise polyhedra and protect them from fusion or
aggregation.
Length = 100
Score = 30.7 bits (70), Expect = 0.076
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 81 KTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINI 123
K + VT G+ L +T +RA AL I
Sbjct: 42 KLWKDLEPGCCRVDSNKLFVTALGVGLLCSRTQSERADALATI 84
>gnl|CDD|220497 pfam09973, DUF2208, Predicted membrane protein (DUF2208). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 232
Score = 28.5 bits (64), Expect = 1.0
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 48 PSPNEVAIGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQR---AGVVTTRAHVHYVVTEHG 104
P E +G G+ T A + I FL L +R ++ Y VTE G
Sbjct: 113 PPLVESLLGPGLGETLARFLVFLAYFEIFFLISMFLFRRVVKFSKMSPMIPRSYKVTEKG 172
Query: 105 I 105
I
Sbjct: 173 I 173
>gnl|CDD|182907 PRK11023, PRK11023, outer membrane lipoprotein; Provisional.
Length = 191
Score = 27.7 bits (62), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 99 VVTEHGIAFLFGKTLRQRAHALINIA 124
V TE+G FL G ++ A A +IA
Sbjct: 149 VTTENGEVFLLGLVTQREAKAAADIA 174
>gnl|CDD|182874 PRK10972, PRK10972, Z-ring-associated protein; Provisional.
Length = 109
Score = 26.7 bits (59), Expect = 2.6
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 7/31 (22%)
Query: 108 LFGKTLRQRAHALINIAPPDHREALEKAAFE 138
+FG++LR +N PP+ R+AL +AA +
Sbjct: 10 IFGRSLR------VN-CPPEQRDALNQAAED 33
>gnl|CDD|151829 pfam11389, Porin_OmpL1, Leptospira porin protein OmpL1. OmpL1 is a
member of the outer membrane (OM) proteins in the
mammalian pathogen Leptospira. Specifically, it is a
porin.
Length = 267
Score = 27.3 bits (60), Expect = 2.7
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 51 NEVAIGAGVVTTRAHVHYVVTEHGIA--FLFGKTLRQRAGVVTTRAHVHY-VVTEHGIAF 107
N ++ G +TTR HV + + GIA FL G R VT + HV + T A+
Sbjct: 187 NLLSDGTDPITTREHVRFRTS--GIAPNFLIGTQAR-----VTDKGHVFLELETIMSAAY 239
Query: 108 LFGKTLRQRAHALINIAP 125
GKT Q +AP
Sbjct: 240 AVGKT--QSIGGAATLAP 255
>gnl|CDD|226723 COG4273, COG4273, Uncharacterized conserved protein [Function
unknown].
Length = 135
Score = 26.7 bits (59), Expect = 3.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 53 VAIGAGVVTTRAHVHYVVTEHGIAFLFGKTLR------QRAGVVTTRAHVHYVVTEHGIA 106
+GAGV A V + I L G LR AGV +A VH +T+ GI
Sbjct: 51 AGVGAGV---PALVDAARSGRRILALDGCPLRCATKCLAEAGV---QADVHLTITDLGIK 104
>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta
subunit [Lipid metabolism].
Length = 225
Score = 26.9 bits (60), Expect = 3.9
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 51 NEVAIGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGI 105
++ GA V VV EH GK L++ +T V V+T+ +
Sbjct: 133 MDLVTGAKKV-------IVVMEHTKKSGVGKILKECTLPLTGNGCVDRVITDLAV 180
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase. This family
includes the following members. Glycinamide
ribonucleotide transformylase catalyzes the third step
in de novo purine biosynthesis, the transfer of a formyl
group to 5'-phosphoribosylglycinamide.
Formyltetrahydrofolate deformylase produces formate from
formyl- tetrahydrofolate. Methionyl-tRNA
formyltransferase transfers a formyl group onto the
amino terminus of the acyl moiety of the methionyl
aminoacyl-tRNA. Inclusion of the following members is
supported by PSI-blast. HOXX_BRAJA contains a related
domain of unknown function. PRTH_PORGI contains a
related domain of unknown function. Y09P_MYCTU (Q50721)
contains a related domain of unknown function.
Length = 181
Score = 26.1 bits (58), Expect = 6.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 38 GSLPLHPSKPP-----SPNEVAIGAGVVTTRAHVHYVVTE 72
L +HPS P +P + A+ AG T VH V E
Sbjct: 103 KILNIHPSLLPRFRGAAPIQRALEAGDKETGVTVHQVDEE 142
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 25.8 bits (57), Expect = 8.8
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 69 VVTEHGIAFLFGKTLRQRAGVVTTRAH------VHYVVTEHGIAFLFGKTLRQRAHALIN 122
++TE +A +F + R + G+AF + + L +
Sbjct: 33 LLTEDSVAAVFAERYGGRLRFCHDTGKWFEWTGTAWKQDRVGLAFHWARELVREMCRG-- 90
Query: 123 IAPPDHREALEKAAF 137
PP R KA+F
Sbjct: 91 -EPPKLRYIASKASF 104
>gnl|CDD|224414 COG1497, COG1497, Predicted transcriptional regulator
[Transcription].
Length = 260
Score = 25.8 bits (57), Expect = 9.0
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 81 KTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERL 140
K L + G++ Y +T+ G +L + R + D+ A E +
Sbjct: 47 KELV-KEGLIEKEGRGEYEITKKGAEWLLEQLSDLRRFSEEVELVLDYVMVWTAIAKEDI 105
Query: 141 K 141
K
Sbjct: 106 K 106
>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau
subunit. A translational frameshift leads to early
termination and a truncated protein subunit gamma,
about 1/3 shorter than tau and present in roughly equal
amounts. This frameshift mechanism is not necessarily
universal for species with DNA polymerase III but
appears conserved in the exterme thermophile Thermus
thermophilis [DNA metabolism, DNA replication,
recombination, and repair].
Length = 355
Score = 25.6 bits (57), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 14 KYMPRTFGDALVHQSH 29
KY P+TF D ++ Q H
Sbjct: 7 KYRPQTFED-VIGQEH 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.419
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,564,470
Number of extensions: 692181
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 40
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)