RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11854
         (141 letters)



>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 79.5 bits (196), Expect = 1e-19
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 42  LHPSKPPSPNEVAIGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVT 101
               +   P  V      VT  A V  +VT+HGIA            V   R  +   + 
Sbjct: 171 APLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIA------------VNPARQDLLDNLR 218

Query: 102 EHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFE 138
             G+A +  + L+QRA  L     P        A   
Sbjct: 219 AAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVR 255


>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 274

 Score = 71.8 bits (176), Expect = 1e-16
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 87  AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAA 136
           + V  T   V  +VTE G+A L G   R+RA  +I N   P ++  L    
Sbjct: 191 SHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHPSYQAPLLDYF 241


>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
           (Homo sapiens), liver isozyme [TaxId: 9606]}
          Length = 360

 Score = 26.9 bits (59), Expect = 1.0
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 39  SLPLHPSKPPSPNEVAIGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHY 98
               H        E    A V      V   V   GI FL G    + A +     ++  
Sbjct: 233 VTAGHACTKKYTPEQVAMATVTALHRTVPAAV--PGICFLSGGMSEEDATLNLNAINLCP 290

Query: 99  VVTEHGIAFLFGKTLRQRA 117
           +     ++F +G+ L+  A
Sbjct: 291 LPKPWKLSFSYGRALQASA 309


>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score = 25.4 bits (54), Expect = 3.0
 Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 9/29 (31%)

Query: 1  MPWRTAIATAQVNKYMPRTFGDALVHQSH 29
          +PW        V KY P+   D +V    
Sbjct: 3  LPW--------VEKYRPQVLSD-IVGNKE 22


>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
           {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
           9986]}
          Length = 363

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 4   RTAIATAQVNKYMPRTFGDALVHQSHFDFACQVDGSLPLHPSKPPSPNEVAIGAGVVTTR 63
           R    T +V   + +   D  ++        + +   P H       +E    A V   R
Sbjct: 200 RCQYVTEKVLAAVYKALSDHHIYLEGTLL--KPNMVTPGHACTQKYSHEEIAMATVTALR 257

Query: 64  AHVHYVVTEHGIAFLFGKTLRQRAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA 117
             V   V   G+ FL G    + A +     +   ++    + F +G+ L+  A
Sbjct: 258 RTVPPAV--TGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASA 309


>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli
           [TaxId: 562]}
          Length = 68

 Score = 23.5 bits (51), Expect = 4.4
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 108 LFGKTLRQRAHALINIAPPDHREALEKAAFERL 140
           +  + LRQ     I   P D R A+     + L
Sbjct: 3   MLSEELRQIVFRTIESLPEDLRMAITLRELDGL 35


>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 252

 Score = 24.8 bits (52), Expect = 4.8
 Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)

Query: 12 VNKYMPRTFGDALVHQSH 29
          V+KY P++    L H   
Sbjct: 2  VDKYRPKSLNA-LSHNEE 18


>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 227

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 9/29 (31%)

Query: 1  MPWRTAIATAQVNKYMPRTFGDALVHQSH 29
          +PW        V KY P T  + +  Q+ 
Sbjct: 2  LPW--------VEKYRPETLDE-VYGQNE 21


>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 23.9 bits (50), Expect = 7.9
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 9/28 (32%)

Query: 2  PWRTAIATAQVNKYMPRTFGDALVHQSH 29
          PW        V KY P+   + +  Q H
Sbjct: 1  PW--------VEKYRPKNLDE-VTAQDH 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 545,463
Number of extensions: 23167
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 14
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)