BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11857
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
          Motif Protein 32
          Length = 88

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
          D     L C  C+  +   +  PKLL C HT+C  CL ++ AS       +RCP C +
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN---GVRCPFCSK 64


>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
          Representative Structure At Ph 7.5, 30 C, In The
          Presence Of Zinc
          Length = 56

 Score = 32.0 bits (71), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 17/67 (25%)

Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
          E+F   FL C  C          PKLLPC HT+C  CL         E   ++CPIC  Q
Sbjct: 2  EEFQ--FLRCQQC----QAEAKCPKLLPCLHTLCSGCL---------EASGMQCPIC--Q 44

Query: 84 ITIPRGG 90
             P G 
Sbjct: 45 APWPLGA 51


>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
          Length = 115

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
          +D   S   C   +CM    E  P  LPC+HT+C  C        T E  +L CP CR +
Sbjct: 7  KDAIPSLSECQCGICMEILVE--PVTLPCNHTLCKPCFQ-----STVEKASLCCPFCRRR 59

Query: 84 IT 85
          ++
Sbjct: 60 VS 61


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
          Finger Protein 141
          Length = 70

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 36 CLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
          C+CM DG      +LPC+H+ C  C+ + +           CPICR Q+T
Sbjct: 19 CICM-DG--RADLILPCAHSFCQKCIDKWSDRHR------NCPICRLQMT 59


>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
          Tripartite Motif-containing Protein 31
          Length = 73

 Score = 28.9 bits (63), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 45 HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
            P  + C H  CL C+++I  +     G  +CP+C+  +
Sbjct: 31 QKPVTIDCGHNFCLKCITQIGET---SCGFFKCPLCKTSV 67


>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
 pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
          Length = 150

 Score = 28.9 bits (63), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 45  HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLL 104
           + P    C H VC  CL R   +Q        CP CR  +    G    + P+ ++  LL
Sbjct: 89  YQPVTTECFHNVCKDCLQRSFKAQ-----VFSCPACRHDL----GQNYIMIPNEILQTLL 139

Query: 105 DLM 107
           DL 
Sbjct: 140 DLF 142


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 28.9 bits (63), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 50  LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
           L C+H+ C +C++     +      + CPICR+ I   +    +L     +N++++ +S 
Sbjct: 69  LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNXINKMVNNLSS 119

Query: 109 --RQRRHII 115
             ++RR ++
Sbjct: 120 EVKERRIVL 128


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 50  LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
           L C+H+ C +C++     +      + CPICR+ I   +    +L     +N++++ +S 
Sbjct: 69  LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNCINKMVNNLSS 119

Query: 109 --RQRRHII 115
             ++RR ++
Sbjct: 120 EVKERRIVL 128


>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
 pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
 pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
 pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
 pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
 pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
 pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
          Length = 695

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 61  LSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCST 120
           L+R+A + TRE    R P+  + +   +  + ++ P F  N+L  +    ++ II   +T
Sbjct: 338 LARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEF--NKLTGIRDEFQKEII---NT 392

Query: 121 HNSQIKKL 128
            ++Q + +
Sbjct: 393 RDTQARTI 400


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 50  LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
           L C+H+ C +C++     +      + CPICR+ I   +    +L     +N++++ +S 
Sbjct: 80  LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNCINKMVNNLSS 130

Query: 109 --RQRRHII 115
             ++RR ++
Sbjct: 131 EVKERRIVL 139


>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
          Tripartite Motif-containing Protein 31
          Length = 63

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 45 HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
            P  + C H  CL C+++I  +     G  +CP+C
Sbjct: 31 QKPVTIDCGHNFCLKCITQIGET---SCGFFKCPLC 63


>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
          Finger) Domain Of Tripartite Motif-Containing Protein 5
          Length = 85

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
          +TC  CL +       P  L C H+ C  CL+        + G   CP+CR
Sbjct: 20 VTCPICLELLT----QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66


>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
           Heterodimer
          Length = 112

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           +  L C  CL +       P    C H  C  C+ ++     ++ G  +CP+C+  IT  
Sbjct: 19  QKILECPICLELI----KEPVSTKCDHIFCKFCMLKLL---NQKKGPSQCPLCKNDIT-K 70

Query: 88  RGGVAALPPSFLVNQLLDLM 107
           R    +   S LV +LL ++
Sbjct: 71  RSLQESTRFSQLVEELLKII 90


>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Tripartite Motif Protein 30
          Length = 85

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 31  LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
           +TC  CL +       P    C+H+ C  C++    S     G   CP+CR  +  P G 
Sbjct: 20  VTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR--VPYPFGN 73

Query: 91  VAALPPSFLVNQLLD 105
              L P+  V  +++
Sbjct: 74  ---LKPNLHVANIVE 85


>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
           Protein Ligase Uhrf1
          Length = 124

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 52  CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLL 104
           C H VC  CL R   +Q        CP CR  +          P   ++NQL 
Sbjct: 70  CQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117


>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
          Length = 391

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 48  KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
           K+ PC H +C  CL+    S+ +      CP CR
Sbjct: 348 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCR 376


>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
           Ubiquitin-Protein Ligases
          Length = 388

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 48  KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
           K+ PC H +C  CL+    S+ +      CP CR
Sbjct: 346 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCR 374


>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
           Complex
          Length = 391

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 48  KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
           K+ PC H +C  CL+    S+ +      CP CR
Sbjct: 348 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCR 376


>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
 pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
 pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
 pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
 pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
 pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
 pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
 pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
          Length = 389

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 48  KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
           K+ PC H +C  CL+    S+ +      CP CR
Sbjct: 346 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCR 374


>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
          Length = 84

 Score = 26.2 bits (56), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 48 KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
          K+ PC H +C  CL+    S+ +      CP CR +I
Sbjct: 41 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCRCEI 72


>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
          Ubiquitination Activity
          Length = 83

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 48 KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
          K+ PC H +C  CL+    S+ +      CP CR +I
Sbjct: 38 KIEPCGHLMCTSCLTSWQESEGQ-----GCPFCRCEI 69


>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
          Length = 162

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 23  YEDFNESFLTCGTCLCMYDGGEHTPKLLPC--SHTVCLHCLSRIAASQTRET 72
           Y D  +  L CG  +  YD    TP L     +H  C+  L    A  T ET
Sbjct: 79  YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130


>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
           Ankyrin Repeat Domains Of Human Ankra2
 pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
           Ankyrin Repeat Domains Of Human Ankra2
          Length = 167

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 23  YEDFNESFLTCGTCLCMYDGGEHTPKLLPC--SHTVCLHCLSRIAASQTRET 72
           Y D  +  L CG  +  YD    TP L     +H  C+  L    A  T ET
Sbjct: 81  YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132


>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
           Ankyrin Repeat Domains Of Human Ankra2
          Length = 183

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 23  YEDFNESFLTCGTCLCMYDGGEHTPKLLPC--SHTVCLHCLSRIAASQTRET 72
           Y D  +  L CG  +  YD    TP L     +H  C+  L    A  T ET
Sbjct: 97  YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148


>pdb|2E84|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
           From Desulfovibrio Vulgaris (Miyazaki F) In The Presence
           Of Zinc Ion
          Length = 556

 Score = 25.8 bits (55), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 44  EHTPKLLPCSHTVCLHCLSRIAASQTR-ETGTLRCPICRE 82
           E  P L   +HT C+ C   +AA+  + ++G + C  C +
Sbjct: 215 EKKPSLREAAHTQCITCHRSVAAAPAKADSGPVSCAGCHD 254


>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
          Length = 394

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 48  KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81
           K+ PC H +C  CL     +  +E+    CP CR
Sbjct: 352 KIEPCGHLMCTSCL-----TAWQESDGQGCPFCR 380


>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
          Tyr363 Phosphorylated Form
          Length = 82

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 48 KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
          K+ PC H +C  CL+       +E+    CP CR +I
Sbjct: 40 KIEPCGHLMCTSCLTAW-----QESDGQGCPFCRCEI 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,164,167
Number of Sequences: 62578
Number of extensions: 104160
Number of successful extensions: 347
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 52
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)