BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11857
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1
SV=1
Length = 734
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL HTPK LPC HT C CL+++ G +RCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----HTPKTLPCLHTYCQDCLAQLDIG-----GQVRCPECREI 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLM 107
+ +P GVAA +F VN LLDL+
Sbjct: 63 VPVPAEGVAAFKTNFFVNGLLDLV 86
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL PK LPC HT C CL+++A E LRCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----RVPKTLPCLHTYCQDCLAQLA-----EGSRLRCPECRES 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLM 107
+ +P GVAA +F VN LLDL+
Sbjct: 63 VPVPPAGVAAFKTNFFVNGLLDLV 86
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL PK LPC HT C CL+++A + G +RCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----RAPKTLPCLHTYCQDCLAQLA-----DGGRVRCPECRET 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLM 107
+ +P GVA+ +F VN LLDL+
Sbjct: 63 VPVPPEGVASFKTNFFVNGLLDLV 86
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+ ++ FL C CL Y PK+LPC HT C CL +Q+ TL CP+CR+
Sbjct: 13 QPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL---TLSCPVCRQT 65
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSR 109
+P GV+AL +F ++ L++ M +
Sbjct: 66 SILPEQGVSALQNNFFISSLMEAMQQ 91
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+ +
Sbjct: 17 DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSR 109
P GVAAL +F + L+D++ R
Sbjct: 70 PEKGVAALQNNFFITNLMDVLQR 92
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+ ++ FL C CL Y PK+LPC HT C CL Q+ TL CP+CR+
Sbjct: 13 QPMDKQFLVCSICLDRY----RCPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQT 65
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSR 109
+P GV+AL +F ++ L++ M +
Sbjct: 66 SILPEQGVSALQNNFFISSLMEAMQQ 91
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+ ++ FL C CL Y PK+LPC HT C CL Q+ TL CP+CR+
Sbjct: 13 QPMDKQFLVCSICLDRY----RCPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQT 65
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSR 109
+P GV+AL +F ++ L++ M +
Sbjct: 66 SILPEQGVSALQNNFFISSLMEAMQQ 91
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E LTC CL Y PKLLPC HT C CL A + R L+CP CR + IP
Sbjct: 38 EQLLTCPICLDRY----KQPKLLPCQHTFCYPCLESCADTLHR---NLKCPECRAEHNIP 90
Query: 88 RGGVAALPPSFLVNQLLDL 106
GV A P++ + L++
Sbjct: 91 YDGVKAFQPNYTLTGFLEI 109
>sp|Q5ZMD4|TRI59_CHICK Tripartite motif-containing protein 59 OS=Gallus gallus GN=TRIM59
PE=2 SV=1
Length = 408
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRET------GTLRCPICR 81
E LTC C +++ P++LPCSHT C CL + + + L+CP CR
Sbjct: 5 EEELTCSICYSLFE----DPRVLPCSHTFCRSCLEGVIQLSSNFSIWRPLRVPLKCPNCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
+ IP G +LP +F + +++ ++ + CS H Q
Sbjct: 61 SIVEIPASGTESLPINFALKAIIEKYRQEDHSDVATCSEHYRQ 103
>sp|Q3UV31|RN223_MOUSE RING finger protein 223 OS=Mus musculus GN=Rnf223 PE=2 SV=2
Length = 285
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT-----RETGTLRCPICREQ 83
S L C C YD TPK L CSH CL CL+R+AA+Q RE + CP CR+
Sbjct: 77 SPLECSICFSGYDNIFKTPKELSCSHVFCLECLARLAAAQPAGRSGRE--AVPCPFCRQP 134
Query: 84 ITIPRGGVAAL 94
T+P G AL
Sbjct: 135 TTVPVAGAPAL 145
>sp|E7ERA6|RN223_HUMAN RING finger protein 223 OS=Homo sapiens GN=RNF223 PE=2 SV=1
Length = 249
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT--RETG-TLRCPICREQIT 85
S L C C YD TPK L C+H CL CL+R+AA+Q R G + CP CR+
Sbjct: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
Query: 86 IPRGGVAAL 94
+P G AL
Sbjct: 107 VPPAGAPAL 115
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT------LRCPICR 81
E LTC C +++ P++LPCSHT C +CL + + L+CP CR
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
I I G+ +LP +F + +++ ++ + C H Q
Sbjct: 61 SIIEIASTGIESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQ 103
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----AASQTRETGT-LRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI A +++ E+ T +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSR 109
IT+ + G+ L + + ++D +
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQK 88
>sp|Q8N8N0|RN152_HUMAN E3 ubiquitin-protein ligase RNF152 OS=Homo sapiens GN=RNF152 PE=1
SV=1
Length = 203
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ +RCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DVRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
GV LPP F V+QL D IP S H KL
Sbjct: 56 ---GVTKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKL 94
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ------TRETGTLRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI S +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSR 109
IT+ + G+ L + + ++D +
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQK 88
>sp|Q9BYV6|TRI55_HUMAN Tripartite motif-containing protein 55 OS=Homo sapiens GN=TRIM55
PE=1 SV=2
Length = 548
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 18 TVSINYEDFN---------ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI---- 64
+ S+NY+ F+ E L C CL M+ +LPC H +C C S I
Sbjct: 2 SASLNYKSFSKEQQTMDNLEKQLICPICLEMFT---KPVVILPCQHNLCRKCASDIFQAS 58
Query: 65 -------AASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR-----QRR 112
+ G RCP CR ++ + R GV L + LV ++D+ + +++
Sbjct: 59 NPYLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKK 118
Query: 113 HIIPKCSTHNSQ 124
P C H +
Sbjct: 119 SDQPMCEEHEEE 130
>sp|D4A723|RN152_RAT E3 ubiquitin-protein ligase RNF152 OS=Rattus norvegicus GN=Rnf152
PE=3 SV=1
Length = 203
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ +RCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DVRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
G+ LPP F V+QL D IP S H KL
Sbjct: 56 ---GITKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKL 94
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=2
Length = 680
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ------TRETGTLRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI S +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSR 109
IT+ + G+ L + + ++D +
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQK 88
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D T K+LPC HT C CL I S+ G LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---TAKVLPCQHTFCRRCLLGIVGSR----GELRCPECR---TLVES 58
Query: 90 GVAALPPSFLVNQLLD-LMSRQRR 112
GV LP + L+ +LLD + R RR
Sbjct: 59 GVDELPSNILLVRLLDGIKQRPRR 82
>sp|Q8BG47|RN152_MOUSE E3 ubiquitin-protein ligase RNF152 OS=Mus musculus GN=Rnf152 PE=2
SV=1
Length = 203
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ +RCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DVRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
G+ LPP F V+QL D IP S H KL
Sbjct: 56 ---GITKLPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKL 94
>sp|Q5PQN5|TRI55_RAT Tripartite motif-containing protein 55 OS=Rattus norvegicus
GN=Trim55 PE=2 SV=1
Length = 545
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 28/132 (21%)
Query: 18 TVSINYEDFN---------ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI---- 64
+ S+NY+ F+ E L C CL M+ +LPC H +C C S I
Sbjct: 2 STSLNYKSFSKEQQTMDNLEKQLICPICLEMFT---KPVVILPCQHNLCRKCASDIFQAS 58
Query: 65 -------AASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR-----QRR 112
+ G RCP CR ++ + R GV L + LV ++D+ + +++
Sbjct: 59 NPYLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKK 118
Query: 113 HIIPKCSTHNSQ 124
P C H +
Sbjct: 119 LDQPMCEEHEEE 130
>sp|D2H6Z0|RN152_AILME E3 ubiquitin-protein ligase RNF152 OS=Ailuropoda melanoleuca
GN=RNF152 PE=3 SV=1
Length = 203
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ +RCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DVRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
G+ LPP F V QL D IP S H KL
Sbjct: 56 ---GITKLPPGFSVAQLPDDPEVLAVIAIPHASEHTPVFIKL 94
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR----ETGTLRCPICREQ 83
E LTC C ++D P++LPCSH C CL + +R + +CP CR++
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLDGVLEENSRTMQWRPSSFKCPTCRKE 60
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSRQRRH-IIPKCSTHNSQ 124
P GV L ++L+ +++ ++ + +P C H+ Q
Sbjct: 61 --TPTMGVNGLQVNYLLKGIVEKYNKIKVSPKMPVCKEHSDQ 100
>sp|E1C2W7|RN152_CHICK E3 ubiquitin-protein ligase RNF152 OS=Gallus gallus GN=RNF152 PE=3
SV=1
Length = 203
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ LRCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DLRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
G+ LPP + V+QL D IP S H KL
Sbjct: 56 ---GITKLPPGYSVSQLPDDPEVIAVIAIPHTSEHTPVFIKL 94
>sp|Q68EV7|R152B_XENLA E3 ubiquitin-protein ligase rnf152-B OS=Xenopus laevis GN=rnf152-b
PE=2 SV=1
Length = 203
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ ASQ LRCP CR
Sbjct: 6 QDSLLECQICFNYY-SPRRRPKLLDCKHTCCSVCLQQMRASQK----DLRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLD 105
GV LPP + V++L D
Sbjct: 56 ---GVTKLPPGYSVSELPD 71
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT------LRCPICR 81
E LTC C +++ P++LPCSHT C +CL I + L+CP CR
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
I G+ +LP +F + +++ ++ I C H Q
Sbjct: 61 SITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQ 103
>sp|D3ZBM4|RN182_RAT E3 ubiquitin-protein ligase RNF182 OS=Rattus norvegicus GN=Rnf182
PE=3 SV=1
Length = 247
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALP 95
V++LP
Sbjct: 78 VSSLP 82
>sp|Q8C432|RN182_MOUSE E3 ubiquitin-protein ligase RNF182 OS=Mus musculus GN=Rnf182 PE=2
SV=1
Length = 247
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALP 95
V++LP
Sbjct: 78 VSSLP 82
>sp|Q8N6D2|RN182_HUMAN E3 ubiquitin-protein ligase RNF182 OS=Homo sapiens GN=RNF182 PE=1
SV=1
Length = 247
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALP 95
V++LP
Sbjct: 78 VSSLP 82
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D + K+LPC HT C CL I S+ LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---SAKVLPCQHTFCKRCLLGIVGSRNE----LRCPECR---TLVGS 58
Query: 90 GVAALPPSFLVNQLLD 105
GV LP + L+ +LLD
Sbjct: 59 GVEQLPSNILLVRLLD 74
>sp|D2H788|RN182_AILME E3 ubiquitin-protein ligase RNF182 OS=Ailuropoda melanoleuca
GN=RNF182 PE=3 SV=1
Length = 247
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDEE 77
Query: 91 VAALP 95
V++LP
Sbjct: 78 VSSLP 82
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT--LRCPICREQIT 85
E LTC C C+++ P++LPCSH+ C CL I T +CP CR++
Sbjct: 5 EEDLTCPICCCLFED----PRVLPCSHSFCKKCLEGILDGNRSPTWRPPFKCPTCRKETV 60
Query: 86 IPRGGVAALPPSFLVNQLLDLMSRQRRHIIPK---CSTHNSQ 124
G+A+L ++ + +++ +R R ++P+ C H+ Q
Sbjct: 61 --HNGIASLQVNYSLRGIVEKYNRIR--VMPRMSQCRVHSGQ 98
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 24 EDFNES----FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
ED +ES L C CL D T K+LPC HT C CL I S+ LRCP
Sbjct: 44 EDMDESSLLDLLECSVCLERLD---TTAKVLPCQHTFCRRCLESIVCSRHE----LRCPE 96
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSRQR 111
CR + GV LP + L+ +LLD + RQR
Sbjct: 97 CRILVGC---GVDELPANILLVRLLDGI-RQR 124
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 24 EDFNES----FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
ED +ES L C CL D T K+LPC HT C CL I S+ LRCP
Sbjct: 39 EDMDESSLLDLLECSVCLERLD---TTAKVLPCQHTFCRRCLESIVCSRHE----LRCPE 91
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSRQR 111
CR + GV LP + L+ +LLD + RQR
Sbjct: 92 CRILVGC---GVDELPANILLVRLLDGI-RQR 119
>sp|Q969Q1|TRI63_HUMAN E3 ubiquitin-protein ligase TRIM63 OS=Homo sapiens GN=TRIM63 PE=1
SV=1
Length = 353
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I +S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQ 124
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +
Sbjct: 75 CPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDE 128
>sp|Q8BGX0|TRI23_MOUSE E3 ubiquitin-protein ligase TRIM23 OS=Mus musculus GN=Trim23 PE=2
SV=1
Length = 574
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 31 LTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L CG C ++ G+ P+LL C HTVC CL+R+ +RCP R+ +
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGR----AIRCPFDRQVTDLGDS 84
Query: 90 GVAALPPSFLVNQLLDLMSR-QRRHI 114
GV L +F LL+L+ R Q HI
Sbjct: 85 GVWGLKKNF---ALLELLERLQNGHI 107
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D + K+LPC HT C CL I +S+ LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---SAKVLPCQHTFCKRCLLGIVSSRKE----LRCPECR---TLVEC 58
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNS 123
GV LP + L+ +LLD + ++ R S NS
Sbjct: 59 GVDELPSNILLVRLLDGIRQRPRKAGDGGSAGNS 92
>sp|Q3UIW8|RN224_MOUSE RING finger protein 224 OS=Mus musculus GN=Rnf224 PE=2 SV=1
Length = 156
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVA 92
C C YD H P+ L C HT C C+ R+ E + CP CR+ +PRGGV
Sbjct: 23 CIICYSAYDLSVHLPRRLYCGHTFCQACMQRLDMP-AHEQHWIPCPQCRQSTPVPRGGVT 81
Query: 93 AL 94
L
Sbjct: 82 ML 83
>sp|Q91Z63|TRI63_RAT E3 ubiquitin-protein ligase TRIM63 OS=Rattus norvegicus GN=Trim63
PE=2 SV=1
Length = 351
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQ 124
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +
Sbjct: 75 CPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDE 128
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1
PE=2 SV=1
Length = 861
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D + K+LPC HT C CL I +S+ LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---SAKVLPCQHTFCKRCLLGIVSSRNE----LRCPECR---TLVEC 58
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNS 123
GV LP + L+ +LLD + ++ R S NS
Sbjct: 59 GVDELPSNILLVRLLDGIKQRPRKAGVGGSAGNS 92
>sp|Q38HM4|TRI63_MOUSE E3 ubiquitin-protein ligase TRIM63 OS=Mus musculus GN=Trim63 PE=1
SV=1
Length = 350
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQ 124
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +
Sbjct: 75 CPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDE 128
>sp|Q58D15|TRI54_BOVIN Tripartite motif-containing protein 54 OS=Bos taurus GN=TRIM54 PE=2
SV=1
Length = 366
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRSSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ 110
RCP CR ++ + R GV L + LV ++D+ ++
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQE 111
>sp|Q32L60|TRI13_BOVIN E3 ubiquitin-protein ligase TRIM13 OS=Bos taurus GN=TRIM13 PE=2
SV=2
Length = 407
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR----ETGTLRCPICREQ 83
E LTC C ++D P++LPCSH C CL I R + +CP CR++
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGNVRNSLWRSSPFKCPTCRKE 60
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSRQR-RHIIPKCSTHNSQ 124
+ GV +L ++ + +++ ++ + +P C H Q
Sbjct: 61 TSAT--GVNSLQVNYSLKGIVEKYNKIKVSPKMPVCKGHLGQ 100
>sp|P36406|TRI23_HUMAN E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens GN=TRIM23 PE=1
SV=1
Length = 574
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 31 LTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L CG C ++ G+ P+LL C HTVC CL+R+ +RCP R+ +
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGR----AIRCPFDRQVTDLGDS 84
Query: 90 GVAALPPSFLVNQLLD 105
GV L +F + +LL+
Sbjct: 85 GVWGLKKNFALLELLE 100
>sp|O60858|TRI13_HUMAN E3 ubiquitin-protein ligase TRIM13 OS=Homo sapiens GN=TRIM13 PE=1
SV=2
Length = 407
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRET----GTLRCPICREQ 83
E LTC C ++D P++LPCSH C CL I R + +CP CR++
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKE 60
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSRQR-RHIIPKCSTHNSQ 124
+ G+ +L ++ + +++ ++ + +P C H Q
Sbjct: 61 TSAT--GINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQ 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,652,462
Number of Sequences: 539616
Number of extensions: 1551083
Number of successful extensions: 4118
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 310
Number of HSP's that attempted gapping in prelim test: 3766
Number of HSP's gapped (non-prelim): 532
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)