Query psy11857
Match_columns 129
No_of_seqs 218 out of 1498
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.8 1.1E-18 3.8E-23 106.5 6.4 73 27-111 10-83 (92)
2 1t1h_A Gspef-atpub14, armadill 99.7 3E-18 1E-22 101.5 3.7 70 28-111 6-75 (78)
3 2y43_A E3 ubiquitin-protein li 99.7 1.6E-17 5.6E-22 102.6 4.5 71 28-113 20-91 (99)
4 3fl2_A E3 ubiquitin-protein li 99.7 2.9E-17 9.8E-22 105.4 4.8 68 28-108 50-117 (124)
5 2kr4_A Ubiquitin conjugation f 99.7 3.9E-17 1.3E-21 98.5 4.8 68 29-111 13-80 (85)
6 1jm7_B BARD1, BRCA1-associated 99.7 1.9E-17 6.7E-22 105.3 2.5 80 28-124 20-104 (117)
7 2kre_A Ubiquitin conjugation f 99.7 6.4E-17 2.2E-21 100.2 4.6 68 29-111 28-95 (100)
8 1wgm_A Ubiquitin conjugation f 99.7 1.2E-16 4.1E-21 98.7 5.2 68 29-111 21-89 (98)
9 3lrq_A E3 ubiquitin-protein li 99.6 4.2E-17 1.4E-21 101.1 3.0 71 28-112 20-91 (100)
10 2yu4_A E3 SUMO-protein ligase 99.6 1.5E-16 5.1E-21 97.5 5.4 74 29-111 6-83 (94)
11 1z6u_A NP95-like ring finger p 99.6 1.5E-16 5.1E-21 105.3 4.9 68 29-109 77-144 (150)
12 2ct2_A Tripartite motif protei 99.6 1.1E-16 3.7E-21 96.6 2.7 69 28-101 13-81 (88)
13 4ayc_A E3 ubiquitin-protein li 99.6 1.1E-16 3.8E-21 104.5 2.3 49 27-85 50-98 (138)
14 2ecw_A Tripartite motif-contai 99.6 4.5E-17 1.5E-21 97.5 -0.1 65 28-101 17-81 (85)
15 2ckl_B Ubiquitin ligase protei 99.6 1.5E-16 5E-21 106.7 2.3 79 29-124 53-132 (165)
16 2ckl_A Polycomb group ring fin 99.6 3.2E-16 1.1E-20 98.2 3.2 71 28-109 13-84 (108)
17 2csy_A Zinc finger protein 183 99.6 1.1E-15 3.9E-20 91.0 5.3 57 28-100 13-69 (81)
18 2yur_A Retinoblastoma-binding 99.6 7.5E-16 2.6E-20 90.4 3.8 52 28-87 13-65 (74)
19 2ecv_A Tripartite motif-contai 99.6 3.1E-17 1E-21 98.3 -2.8 65 28-101 17-81 (85)
20 2egp_A Tripartite motif-contai 99.6 1.7E-17 6E-22 98.3 -5.2 65 28-101 10-75 (79)
21 1jm7_A BRCA1, breast cancer ty 99.5 5.5E-16 1.9E-20 97.5 0.6 51 29-86 20-70 (112)
22 3l11_A E3 ubiquitin-protein li 99.5 6.4E-16 2.2E-20 97.8 0.9 72 28-108 13-86 (115)
23 2c2l_A CHIP, carboxy terminus 99.5 3E-15 1E-19 107.2 4.3 69 29-111 207-275 (281)
24 2ysj_A Tripartite motif-contai 99.5 4.8E-15 1.6E-19 84.2 4.1 47 27-80 17-63 (63)
25 2ysl_A Tripartite motif-contai 99.5 2.7E-15 9.2E-20 87.5 3.1 53 27-86 17-69 (73)
26 2f42_A STIP1 homology and U-bo 99.5 6.9E-15 2.4E-19 99.6 5.1 69 29-111 105-173 (179)
27 3hct_A TNF receptor-associated 99.5 4E-15 1.4E-19 94.6 3.5 67 27-107 15-81 (118)
28 2ecy_A TNF receptor-associated 99.5 3.9E-15 1.3E-19 85.3 2.8 49 28-85 13-61 (66)
29 3knv_A TNF receptor-associated 99.5 1.6E-15 5.5E-20 99.4 1.2 50 27-85 28-77 (141)
30 2djb_A Polycomb group ring fin 99.5 7E-15 2.4E-19 85.7 3.5 49 28-86 13-62 (72)
31 1rmd_A RAG1; V(D)J recombinati 99.5 8.8E-15 3E-19 92.7 3.8 50 28-86 21-70 (116)
32 2d8t_A Dactylidin, ring finger 99.5 1.5E-14 5E-19 84.1 2.9 47 29-85 14-60 (71)
33 1g25_A CDK-activating kinase a 99.5 3E-14 1E-18 81.3 3.2 53 29-86 2-55 (65)
34 1bor_A Transcription factor PM 99.5 4.9E-15 1.7E-19 82.4 -0.3 50 29-91 5-54 (56)
35 3htk_C E3 SUMO-protein ligase 99.4 3.4E-14 1.2E-18 100.8 3.5 69 29-110 180-251 (267)
36 2ecm_A Ring finger and CHY zin 99.4 4.4E-14 1.5E-18 77.9 3.1 51 29-85 4-54 (55)
37 3ng2_A RNF4, snurf, ring finge 99.4 2.6E-14 8.8E-19 82.8 2.2 52 29-86 9-63 (71)
38 2ea6_A Ring finger protein 4; 99.4 3.2E-14 1.1E-18 81.8 2.4 52 28-85 13-67 (69)
39 2ecj_A Tripartite motif-contai 99.4 6.5E-14 2.2E-18 78.0 2.6 46 28-80 13-58 (58)
40 3hcs_A TNF receptor-associated 99.4 7E-14 2.4E-18 94.0 3.2 66 27-106 15-80 (170)
41 1x4j_A Ring finger protein 38; 99.4 9.1E-14 3.1E-18 81.5 3.2 52 27-85 20-71 (75)
42 2xeu_A Ring finger protein 4; 99.4 7.5E-14 2.6E-18 79.1 2.3 51 29-85 2-55 (64)
43 2kiz_A E3 ubiquitin-protein li 99.4 3.3E-13 1.1E-17 77.8 4.6 52 28-86 12-63 (69)
44 1chc_A Equine herpes virus-1 r 99.4 1.4E-13 4.8E-18 79.1 2.6 47 29-85 4-51 (68)
45 2l0b_A E3 ubiquitin-protein li 99.4 2.1E-13 7.3E-18 82.8 3.2 51 28-85 38-88 (91)
46 1e4u_A Transcriptional repress 99.4 1.5E-13 5.1E-18 81.3 2.3 52 28-86 9-62 (78)
47 1iym_A EL5; ring-H2 finger, ub 99.4 1.6E-13 5.3E-18 75.7 1.6 51 28-85 3-54 (55)
48 2ect_A Ring finger protein 126 99.3 2.7E-13 9.4E-18 79.9 1.8 52 28-86 13-64 (78)
49 4ap4_A E3 ubiquitin ligase RNF 99.3 4.4E-13 1.5E-17 86.1 2.0 48 28-85 5-59 (133)
50 2ep4_A Ring finger protein 24; 99.3 1.3E-12 4.3E-17 76.2 3.0 50 29-85 14-63 (74)
51 2ecn_A Ring finger protein 141 99.3 2.5E-13 8.6E-18 78.5 -0.1 47 28-85 13-59 (70)
52 4ic3_A E3 ubiquitin-protein li 99.2 1.3E-12 4.3E-17 76.5 1.1 44 28-85 22-66 (74)
53 1v87_A Deltex protein 2; ring- 99.2 4E-12 1.4E-16 80.0 2.8 56 30-86 25-94 (114)
54 2ecg_A Baculoviral IAP repeat- 99.2 8.7E-13 3E-17 77.4 -0.6 44 28-85 23-67 (75)
55 1wim_A KIAA0161 protein; ring 99.2 1.4E-12 4.8E-17 79.6 0.1 74 29-110 4-84 (94)
56 2ecl_A Ring-box protein 2; RNF 99.2 1.1E-11 3.8E-16 73.6 2.8 51 30-86 15-76 (81)
57 2vje_B MDM4 protein; proto-onc 99.1 1.7E-11 5.8E-16 69.5 2.8 47 29-85 6-55 (63)
58 2y1n_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 91.1 4.0 50 28-86 330-379 (389)
59 2vje_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 69.5 2.5 47 29-85 7-56 (64)
60 4ap4_A E3 ubiquitin ligase RNF 99.1 2.4E-11 8.1E-16 77.9 2.6 53 27-85 69-124 (133)
61 3dpl_R Ring-box protein 1; ubi 99.0 1.2E-10 4.1E-15 72.6 3.0 52 29-86 36-101 (106)
62 2ea5_A Cell growth regulator w 99.0 1.2E-10 4.1E-15 67.0 2.6 45 27-85 12-57 (68)
63 2yho_A E3 ubiquitin-protein li 99.0 4.8E-11 1.6E-15 70.6 0.8 44 29-86 17-61 (79)
64 2d8s_A Cellular modulator of i 98.9 7.9E-10 2.7E-14 65.5 3.2 53 29-87 14-71 (80)
65 3t6p_A Baculoviral IAP repeat- 98.9 2.5E-10 8.6E-15 84.4 0.1 44 28-85 293-337 (345)
66 2bay_A PRE-mRNA splicing facto 98.9 1.7E-09 5.7E-14 60.8 3.3 47 30-86 3-50 (61)
67 4a0k_B E3 ubiquitin-protein li 98.7 1.5E-09 5E-14 68.7 0.2 51 29-85 47-111 (117)
68 2ct0_A Non-SMC element 1 homol 98.5 7.6E-08 2.6E-12 56.0 3.1 53 27-86 12-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.5 6.5E-08 2.2E-12 58.8 2.8 46 32-85 3-48 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.2 7.1E-07 2.4E-11 49.8 2.6 49 29-85 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.9E-06 6.5E-11 63.4 2.4 58 29-86 307-373 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 97.5 2.6E-05 8.8E-10 47.5 1.6 33 29-64 2-36 (101)
73 3m62_A Ubiquitin conjugation f 96.7 0.0014 4.6E-08 54.1 4.5 68 29-111 890-958 (968)
74 3nw0_A Non-structural maintena 96.7 0.0017 5.8E-08 45.5 3.9 48 30-85 180-228 (238)
75 2cs3_A Protein C14ORF4, MY039 94.1 0.018 6.2E-07 33.4 1.3 48 30-80 15-64 (93)
76 2ko5_A Ring finger protein Z; 93.6 0.021 7E-07 34.2 0.9 47 29-86 27-73 (99)
77 3i2d_A E3 SUMO-protein ligase 93.3 0.071 2.4E-06 39.6 3.5 65 30-107 249-316 (371)
78 4fo9_A E3 SUMO-protein ligase 93.0 0.084 2.9E-06 39.1 3.5 65 30-107 215-282 (360)
79 1weo_A Cellulose synthase, cat 87.5 0.6 2.1E-05 27.5 3.2 51 30-85 16-69 (93)
80 1vfy_A Phosphatidylinositol-3- 84.9 0.4 1.4E-05 27.0 1.5 33 30-62 11-43 (73)
81 1joc_A EEA1, early endosomal a 84.9 0.34 1.2E-05 30.4 1.3 34 30-63 69-102 (125)
82 1z2q_A LM5-1; membrane protein 84.4 0.39 1.3E-05 27.9 1.3 34 30-63 21-54 (84)
83 2yw8_A RUN and FYVE domain-con 84.3 0.36 1.2E-05 27.9 1.1 34 30-63 19-52 (82)
84 3t7l_A Zinc finger FYVE domain 83.6 0.43 1.5E-05 28.1 1.3 35 30-64 20-54 (90)
85 1wfk_A Zinc finger, FYVE domai 82.0 0.45 1.5E-05 27.9 1.0 34 30-63 9-42 (88)
86 1x4u_A Zinc finger, FYVE domai 81.8 0.5 1.7E-05 27.4 1.1 34 30-63 14-47 (84)
87 1y02_A CARP2, FYVE-ring finger 80.0 0.45 1.5E-05 29.7 0.5 50 30-85 19-68 (120)
88 1f62_A Transcription factor WS 78.6 0.45 1.5E-05 24.7 0.1 47 32-83 2-50 (51)
89 1dvp_A HRS, hepatocyte growth 77.9 0.71 2.4E-05 31.6 1.0 35 29-63 160-194 (220)
90 6rxn_A Rubredoxin; electron tr 76.2 0.49 1.7E-05 24.4 -0.2 12 30-41 4-15 (46)
91 3zyq_A Hepatocyte growth facto 75.7 1.1 3.8E-05 30.8 1.5 35 29-63 163-197 (226)
92 2o35_A Hypothetical protein DU 75.2 1.1 3.9E-05 26.9 1.2 13 55-67 42-54 (105)
93 2xqn_T Testin, TESS; metal-bin 75.1 1.4 4.9E-05 27.0 1.8 49 26-85 26-74 (126)
94 3mjh_B Early endosome antigen 74.8 0.32 1.1E-05 23.4 -1.0 12 29-40 4-15 (34)
95 3fyb_A Protein of unknown func 74.6 1.2 4.1E-05 26.7 1.2 13 55-67 41-53 (104)
96 2lri_C Autoimmune regulator; Z 74.5 1.3 4.4E-05 24.5 1.3 47 30-84 12-60 (66)
97 1wil_A KIAA1045 protein; ring 73.0 2.3 7.8E-05 24.8 2.1 49 29-82 14-75 (89)
98 2k16_A Transcription initiatio 71.7 0.48 1.6E-05 26.7 -1.0 52 29-85 17-70 (75)
99 2jne_A Hypothetical protein YF 71.7 0.18 6.1E-06 30.3 -2.8 41 30-85 32-72 (101)
100 3mpx_A FYVE, rhogef and PH dom 71.3 0.82 2.8E-05 34.1 0.0 54 30-83 375-429 (434)
101 2ct7_A Ring finger protein 31; 68.2 1.2 4.2E-05 25.8 0.3 33 32-64 27-61 (86)
102 1wff_A Riken cDNA 2810002D23 p 65.3 4.2 0.00014 23.7 2.2 28 30-59 25-52 (85)
103 3lqh_A Histone-lysine N-methyl 64.2 1.9 6.5E-05 28.8 0.6 53 31-84 3-64 (183)
104 1wfp_A Zinc finger (AN1-like) 63.8 4.8 0.00016 22.8 2.2 28 29-59 24-51 (74)
105 1wfl_A Zinc finger protein 216 62.5 4.5 0.00016 22.9 1.9 27 30-59 25-51 (74)
106 2lv9_A Histone-lysine N-methyl 61.4 1.7 6E-05 25.8 0.1 48 28-82 26-75 (98)
107 2drp_A Protein (tramtrack DNA- 61.2 11 0.00038 19.3 3.4 41 30-85 10-51 (66)
108 2zet_C Melanophilin; complex, 61.1 3.3 0.00011 26.8 1.4 50 29-83 67-117 (153)
109 1zbd_B Rabphilin-3A; G protein 60.7 2.3 8E-05 26.9 0.6 53 29-83 54-107 (134)
110 2cup_A Skeletal muscle LIM-pro 59.4 1.7 5.8E-05 25.4 -0.2 49 26-85 29-77 (101)
111 4gzn_C ZFP-57, zinc finger pro 58.4 11 0.00037 19.9 3.0 40 30-85 4-43 (60)
112 2lbm_A Transcriptional regulat 57.4 5.8 0.0002 25.4 2.0 47 30-82 63-116 (142)
113 2ct1_A Transcriptional repress 57.1 16 0.00056 19.4 3.8 41 30-85 15-56 (77)
114 1weu_A Inhibitor of growth fam 56.2 1.6 5.6E-05 25.8 -0.7 46 29-84 35-86 (91)
115 3uk3_C Zinc finger protein 217 55.6 15 0.00053 18.0 3.3 40 30-85 4-43 (57)
116 1wd2_A Ariadne-1 protein homol 54.5 0.65 2.2E-05 25.2 -2.5 38 30-67 6-47 (60)
117 2rgt_A Fusion of LIM/homeobox 54.5 10 0.00036 24.3 3.0 38 25-66 28-65 (169)
118 1x6e_A Zinc finger protein 24; 54.1 19 0.00065 18.9 3.7 41 29-85 13-53 (72)
119 1we9_A PHD finger family prote 53.2 1.3 4.6E-05 23.9 -1.4 51 29-83 5-58 (64)
120 2eps_A POZ-, at HOOK-, and zin 52.3 20 0.0007 17.6 3.7 40 30-85 12-52 (54)
121 2jrp_A Putative cytoplasmic pr 51.9 0.49 1.7E-05 27.4 -3.4 10 31-40 3-12 (81)
122 2jmo_A Parkin; IBR, E3 ligase, 51.7 0.66 2.3E-05 26.6 -2.9 35 30-64 25-68 (80)
123 1wep_A PHF8; structural genomi 51.3 11 0.00039 21.1 2.4 50 30-84 12-64 (79)
124 2l5u_A Chromodomain-helicase-D 51.2 4 0.00014 21.9 0.4 46 29-82 10-57 (61)
125 1x61_A Thyroid receptor intera 49.7 20 0.00068 19.1 3.3 40 25-67 28-67 (72)
126 2lce_A B-cell lymphoma 6 prote 48.9 28 0.00096 18.2 3.9 41 29-85 16-56 (74)
127 2lv2_A Insulinoma-associated p 48.8 21 0.00072 20.2 3.4 41 29-85 27-67 (85)
128 1x5w_A Zinc finger protein 64, 47.9 26 0.00089 18.1 3.6 40 30-85 9-48 (70)
129 1erd_A Pheromone ER-2; NMR {Eu 47.6 4 0.00014 19.4 0.0 18 49-66 9-26 (40)
130 2xjy_A Rhombotin-2; oncoprotei 47.4 13 0.00043 22.6 2.4 54 25-85 24-77 (131)
131 2adr_A ADR1; transcription reg 47.2 25 0.00086 17.4 3.3 40 30-85 2-41 (60)
132 2d8x_A Protein pinch; LIM doma 46.9 12 0.00043 19.9 2.1 40 25-67 26-65 (70)
133 3ql9_A Transcriptional regulat 46.9 12 0.00042 23.4 2.2 47 30-82 57-110 (129)
134 2ffw_A Midline-1; B-BOX, ring 46.5 24 0.00081 19.7 3.3 34 29-63 29-62 (78)
135 2akl_A PHNA-like protein PA012 45.9 10 0.00036 23.9 1.7 17 25-41 22-38 (138)
136 2jtn_A LIM domain-binding prot 45.7 7 0.00024 25.5 1.0 47 27-85 84-130 (182)
137 1bbo_A Human enhancer-binding 45.4 27 0.00092 17.0 3.7 39 31-85 2-40 (57)
138 2dmd_A Zinc finger protein 64, 45.1 36 0.0012 18.6 4.1 13 73-85 63-75 (96)
139 2jvx_A NF-kappa-B essential mo 44.8 9.4 0.00032 17.3 1.1 13 73-85 2-14 (28)
140 2epr_A POZ-, at HOOK-, and zin 44.8 23 0.0008 16.8 2.8 37 30-82 12-48 (48)
141 1z60_A TFIIH basal transcripti 44.4 9.1 0.00031 20.6 1.2 40 31-80 16-58 (59)
142 1m3v_A FLIN4, fusion of the LI 44.3 8.5 0.00029 23.4 1.2 51 28-85 30-80 (122)
143 2d9h_A Zinc finger protein 692 43.8 18 0.00063 19.2 2.5 41 30-85 7-49 (78)
144 2yt5_A Metal-response element- 43.5 1 3.6E-05 24.5 -2.8 54 29-83 5-61 (66)
145 3vhs_A ATPase wrnip1; zinc fin 43.4 5.9 0.0002 17.6 0.2 11 30-40 6-16 (29)
146 2cur_A Skeletal muscle LIM-pro 43.2 23 0.00078 18.8 2.8 40 25-67 26-65 (69)
147 1rut_X Flinc4, fusion protein 43.0 10 0.00036 24.8 1.6 54 25-85 27-80 (188)
148 3kde_C Transposable element P 42.2 11 0.00037 21.5 1.3 47 76-124 3-50 (77)
149 1fp0_A KAP-1 corepressor; PHD 41.9 3.5 0.00012 24.2 -0.8 47 29-83 24-72 (88)
150 2cot_A Zinc finger protein 435 41.7 35 0.0012 18.0 3.5 41 29-85 17-57 (77)
151 2ee8_A Protein ODD-skipped-rel 41.4 37 0.0013 19.1 3.8 12 30-41 17-28 (106)
152 2kgg_A Histone demethylase jar 41.2 11 0.00038 19.3 1.2 45 32-81 4-52 (52)
153 2dar_A PDZ and LIM domain prot 40.5 15 0.00053 20.8 1.9 34 29-65 50-83 (90)
154 2gmg_A Hypothetical protein PF 40.0 14 0.00048 22.3 1.6 29 46-85 67-95 (105)
155 2l43_A N-teminal domain from h 39.9 3.9 0.00013 23.8 -0.8 52 28-84 23-76 (88)
156 1iml_A CRIP, cysteine rich int 39.9 9.2 0.00032 20.9 0.8 48 25-83 22-70 (76)
157 2ku3_A Bromodomain-containing 39.3 6 0.0002 22.0 -0.1 50 29-83 15-66 (71)
158 3ddt_A E3 ubiquitin-protein li 38.4 15 0.0005 18.3 1.4 15 114-128 5-19 (48)
159 1x6h_A Transcriptional repress 38.3 46 0.0016 17.7 3.7 41 30-85 15-58 (86)
160 2e6r_A Jumonji/ARID domain-con 38.1 1.1 3.9E-05 26.4 -3.4 50 29-83 15-66 (92)
161 3asl_A E3 ubiquitin-protein li 37.3 3.8 0.00013 22.7 -1.1 47 32-82 20-68 (70)
162 2rpc_A Zinc finger protein ZIC 37.2 69 0.0023 19.3 4.8 13 29-41 24-36 (155)
163 2d8z_A Four and A half LIM dom 36.4 24 0.00081 18.7 2.1 39 25-66 26-64 (70)
164 4ayb_P DNA-directed RNA polyme 36.4 1.9 6.5E-05 22.2 -2.2 15 73-87 22-36 (48)
165 2epq_A POZ-, at HOOK-, and zin 36.3 35 0.0012 15.7 3.4 36 30-81 10-45 (45)
166 1mm2_A MI2-beta; PHD, zinc fin 36.2 2.2 7.7E-05 23.0 -2.2 47 29-83 8-56 (61)
167 1llm_C Chimera of ZIF23-GCN4; 36.1 38 0.0013 18.4 3.1 40 30-85 3-42 (88)
168 1nyp_A Pinch protein; LIM doma 35.9 18 0.00062 19.0 1.6 36 26-64 27-62 (66)
169 1wyh_A SLIM 2, skeletal muscle 35.1 25 0.00086 18.7 2.1 37 27-66 30-66 (72)
170 2d8v_A Zinc finger FYVE domain 35.1 14 0.00049 20.3 1.0 32 29-65 7-39 (67)
171 3v43_A Histone acetyltransfera 34.3 5.3 0.00018 24.2 -0.9 30 51-82 82-111 (112)
172 1wfh_A Zinc finger (AN1-like) 34.3 14 0.00049 20.2 1.0 27 30-59 15-41 (64)
173 3shb_A E3 ubiquitin-protein li 34.1 3.4 0.00012 23.5 -1.7 47 32-82 28-76 (77)
174 2e6s_A E3 ubiquitin-protein li 33.6 3.8 0.00013 23.2 -1.6 47 32-82 28-76 (77)
175 1x4l_A Skeletal muscle LIM-pro 33.4 24 0.00083 18.8 1.9 36 26-64 31-66 (72)
176 1b8t_A Protein (CRP1); LIM dom 33.3 22 0.00076 23.2 2.0 46 27-83 139-184 (192)
177 3u5n_A E3 ubiquitin-protein li 33.0 4.9 0.00017 27.0 -1.3 47 30-84 7-55 (207)
178 1fre_A Nuclear factor XNF7; zi 33.0 17 0.00059 17.3 1.1 13 115-128 3-15 (42)
179 1lv3_A Hypothetical protein YA 32.7 17 0.00057 20.2 1.1 14 73-86 8-21 (68)
180 1x4k_A Skeletal muscle LIM-pro 31.8 22 0.00077 18.9 1.5 37 27-66 30-66 (72)
181 1wg2_A Zinc finger (AN1-like) 31.4 26 0.0009 19.1 1.7 27 30-59 15-41 (64)
182 2yt9_A Zinc finger-containing 31.3 66 0.0023 17.4 3.8 13 73-85 64-76 (95)
183 1x63_A Skeletal muscle LIM-pro 31.3 30 0.001 18.9 2.1 38 27-67 40-77 (82)
184 2ysm_A Myeloid/lymphoid or mix 31.1 5.3 0.00018 24.0 -1.3 48 29-81 6-55 (111)
185 3o36_A Transcription intermedi 30.7 5.7 0.00019 26.1 -1.3 47 30-84 4-52 (184)
186 2puy_A PHD finger protein 21A; 30.6 1.6 5.4E-05 23.4 -3.4 46 30-83 5-52 (60)
187 2yql_A PHD finger protein 21A; 30.6 1.5 5E-05 23.2 -3.5 46 29-82 8-55 (56)
188 2ri7_A Nucleosome-remodeling f 30.5 10 0.00034 24.6 -0.1 51 29-84 7-60 (174)
189 3gox_A Restriction endonucleas 30.2 64 0.0022 21.7 3.7 56 30-85 75-148 (200)
190 1wen_A Inhibitor of growth fam 29.4 6.6 0.00022 21.8 -1.0 46 29-84 15-66 (71)
191 2fiy_A Protein FDHE homolog; F 29.1 3.3 0.00011 30.0 -2.9 13 28-40 180-192 (309)
192 3d00_A Tungsten formylmethanof 28.9 12 0.0004 25.1 -0.0 25 29-62 162-186 (191)
193 2jny_A Uncharacterized BCR; st 28.9 41 0.0014 18.4 2.3 34 29-88 9-42 (67)
194 2kpi_A Uncharacterized protein 28.6 25 0.00085 18.5 1.3 12 29-40 9-20 (56)
195 1ard_A Yeast transcription fac 28.6 18 0.0006 14.5 0.6 11 30-40 2-12 (29)
196 3ask_A E3 ubiquitin-protein li 28.5 5.2 0.00018 27.6 -1.8 47 32-82 176-224 (226)
197 1p7a_A BF3, BKLF, kruppel-like 28.4 25 0.00086 15.3 1.2 13 73-85 10-22 (37)
198 1x64_A Alpha-actinin-2 associa 28.3 27 0.00093 19.6 1.5 34 29-65 50-83 (89)
199 2jmi_A Protein YNG1, ING1 homo 27.5 3.3 0.00011 24.3 -2.6 46 28-83 24-76 (90)
200 2ro1_A Transcription intermedi 27.4 6.4 0.00022 26.2 -1.5 45 31-84 3-50 (189)
201 2kvf_A Zinc finger and BTB dom 27.4 18 0.00063 14.4 0.5 11 30-40 3-13 (28)
202 2kmk_A Zinc finger protein GFI 27.2 61 0.0021 16.9 2.9 10 31-40 2-11 (82)
203 2dlq_A GLI-kruppel family memb 27.1 83 0.0028 17.9 3.7 12 30-41 7-18 (124)
204 2yvr_A Transcription intermedi 27.0 27 0.00094 17.3 1.3 15 114-128 5-19 (50)
205 1x62_A C-terminal LIM domain p 26.7 26 0.00089 19.2 1.3 35 29-66 40-74 (79)
206 2kvh_A Zinc finger and BTB dom 26.7 19 0.00066 14.3 0.5 11 30-40 3-13 (27)
207 2elx_A Zinc finger protein 406 26.7 29 0.00099 14.7 1.2 13 73-85 6-18 (35)
208 2cuq_A Four and A half LIM dom 26.6 55 0.0019 17.7 2.6 38 26-66 37-74 (80)
209 2d8u_A Ubiquitin ligase TRIM63 26.6 35 0.0012 17.8 1.7 15 114-128 7-21 (64)
210 2xb1_A Pygopus homolog 2, B-ce 26.5 8.9 0.0003 23.0 -0.9 54 30-84 3-62 (105)
211 2wbs_A Krueppel-like factor 4; 26.0 57 0.0019 17.4 2.7 13 73-85 64-76 (89)
212 2jr6_A UPF0434 protein NMA0874 25.8 46 0.0016 18.2 2.1 34 29-88 7-40 (68)
213 2m0f_A Zinc finger and BTB dom 25.8 26 0.00087 13.9 0.9 12 74-85 2-13 (29)
214 2els_A Zinc finger protein 406 25.8 30 0.001 14.9 1.2 13 73-85 8-20 (36)
215 1l8d_A DNA double-strand break 25.2 21 0.00073 21.1 0.7 12 74-85 47-58 (112)
216 1znf_A 31ST zinc finger from X 25.2 23 0.00077 13.9 0.6 10 31-40 2-11 (27)
217 2elt_A Zinc finger protein 406 25.1 33 0.0011 14.7 1.3 13 73-85 8-20 (36)
218 2lt7_A Transcriptional regulat 25.0 64 0.0022 19.6 2.9 55 30-85 22-89 (133)
219 1a1h_A QGSR zinc finger peptid 24.9 78 0.0027 16.8 3.1 13 73-85 61-73 (90)
220 2elq_A Zinc finger protein 406 24.8 33 0.0011 14.7 1.3 13 73-85 8-20 (36)
221 2elp_A Zinc finger protein 406 24.8 32 0.0011 14.9 1.2 13 73-85 8-20 (37)
222 1rik_A E6APC1 peptide; E6-bind 24.6 29 0.00099 13.8 1.0 12 74-85 2-13 (29)
223 2ctd_A Zinc finger protein 512 24.5 54 0.0018 18.6 2.4 39 30-85 34-73 (96)
224 2m0e_A Zinc finger and BTB dom 24.5 26 0.0009 13.8 0.8 12 74-85 2-13 (29)
225 3f6q_B LIM and senescent cell 24.5 26 0.00089 18.5 0.9 34 27-63 36-69 (72)
226 2lvu_A Zinc finger and BTB dom 30.0 16 0.00055 14.4 0.0 10 31-40 3-12 (26)
227 2elr_A Zinc finger protein 406 24.1 28 0.00097 14.9 0.9 11 30-40 9-19 (36)
228 2kvg_A Zinc finger and BTB dom 23.8 22 0.00075 14.2 0.4 11 30-40 3-13 (27)
229 2elm_A Zinc finger protein 406 23.8 37 0.0013 14.8 1.3 13 73-85 8-20 (37)
230 1srk_A Zinc finger protein ZFP 23.8 36 0.0012 14.4 1.3 13 73-85 6-18 (35)
231 1wig_A KIAA1808 protein; LIM d 23.6 35 0.0012 18.4 1.4 40 25-66 26-65 (73)
232 1x6a_A LIMK-2, LIM domain kina 23.6 94 0.0032 16.7 3.3 41 25-67 36-77 (81)
233 2m0d_A Zinc finger and BTB dom 23.3 24 0.00082 14.1 0.5 11 30-40 3-13 (30)
234 2i5o_A DNA polymerase ETA; zin 23.3 36 0.0012 16.5 1.2 15 72-86 7-21 (39)
235 2k5c_A Uncharacterized protein 23.1 59 0.002 18.7 2.2 14 73-86 50-63 (95)
236 2l3k_A Rhombotin-2, linker, LI 23.0 1E+02 0.0035 18.4 3.6 39 27-67 33-71 (123)
237 2csz_A Synaptotagmin-like prot 22.9 42 0.0014 19.0 1.6 49 28-82 23-72 (76)
238 1x4w_A Hypothetical protein FL 22.9 17 0.00058 20.1 -0.1 26 30-59 15-44 (67)
239 2iyb_E Testin, TESS, TES; LIM 22.8 30 0.001 18.1 1.0 32 28-62 30-62 (65)
240 2csh_A Zinc finger protein 297 22.8 54 0.0018 18.5 2.2 13 73-85 64-76 (110)
241 2egq_A FHL1 protein; LIM domai 22.5 32 0.0011 18.5 1.1 33 27-62 43-75 (77)
242 2ebt_A Krueppel-like factor 5; 22.5 1E+02 0.0035 16.7 3.4 55 30-85 15-86 (100)
243 2lvr_A Zinc finger and BTB dom 27.9 19 0.00064 14.6 0.0 11 30-40 3-13 (30)
244 1wev_A Riken cDNA 1110020M19; 22.2 7 0.00024 22.6 -1.9 55 30-85 16-74 (88)
245 1a7i_A QCRP2 (LIM1); LIM domai 22.2 17 0.00059 20.0 -0.1 39 25-66 29-67 (81)
246 2lvt_A Zinc finger and BTB dom 27.7 19 0.00064 14.6 0.0 10 31-40 3-12 (29)
247 2wbt_A B-129; zinc finger; 2.7 22.1 89 0.003 18.2 3.2 13 73-85 99-111 (129)
248 1lko_A Rubrerythrin all-iron(I 22.1 17 0.00057 24.1 -0.3 12 30-41 155-166 (191)
249 1paa_A Yeast transcription fac 21.7 28 0.00097 14.0 0.6 10 31-40 3-12 (30)
250 1klr_A Zinc finger Y-chromosom 21.6 26 0.00089 14.0 0.5 10 31-40 3-12 (30)
251 3c6w_A P28ING5, inhibitor of g 21.6 5.1 0.00018 21.4 -2.4 43 30-82 9-57 (59)
252 2d8y_A Eplin protein; LIM doma 21.1 41 0.0014 18.9 1.4 37 27-66 39-75 (91)
253 2e72_A POGO transposable eleme 21.1 34 0.0012 17.5 0.9 14 72-85 10-23 (49)
254 2g6q_A Inhibitor of growth pro 21.1 4.1 0.00014 22.1 -2.9 43 30-82 11-59 (62)
255 1x3h_A Leupaxin; paxillin fami 21.0 72 0.0025 17.2 2.4 38 26-66 37-74 (80)
256 2elv_A Zinc finger protein 406 20.8 44 0.0015 14.3 1.2 13 73-85 8-20 (36)
257 3c5k_A HD6, histone deacetylas 20.7 28 0.00096 21.0 0.6 25 30-58 24-48 (109)
258 1x68_A FHL5 protein; four-and- 20.6 28 0.00096 18.8 0.5 32 27-61 32-63 (76)
259 3pwf_A Rubrerythrin; non heme 20.4 31 0.0011 22.5 0.8 11 30-40 138-148 (170)
260 1g47_A Pinch protein; LIM doma 20.3 29 0.00098 18.7 0.5 35 27-64 36-70 (77)
261 2cu8_A Cysteine-rich protein 2 20.3 28 0.00095 18.8 0.5 37 26-65 32-69 (76)
262 2gvi_A Conserved hypothetical 20.1 41 0.0014 22.5 1.3 30 29-62 171-201 (204)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=106.46 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=62.6
Q ss_pred ccCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLD 105 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~ 105 (129)
..+.+.|+||++.| .+|++++ |||+||..||..|+.. .....||.||..+... ..+.+|+.+.++++
T Consensus 10 ~~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~ 77 (92)
T 3ztg_A 10 IPDELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSP----DALIANKFLRQAVN 77 (92)
T ss_dssp CCTTTEETTTTEEC----SSCEECTTTCCEECHHHHHHHHHH----CTTCCCTTTCCSSCCT----TSCEECHHHHHHHH
T ss_pred CCcCCCCCCCChhh----cCceECCCCCCHHHHHHHHHHHHh----cCCCcCcCCCCcCCCc----cccCcCHHHHHHHH
Confidence 34589999999999 7999999 9999999999999986 3457999999986433 46889999999999
Q ss_pred HHHhhc
Q psy11857 106 LMSRQR 111 (129)
Q Consensus 106 ~~~~~~ 111 (129)
.+.+.+
T Consensus 78 ~~~~~~ 83 (92)
T 3ztg_A 78 NFKNET 83 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=3e-18 Score=101.50 Aligned_cols=70 Identities=19% Similarity=0.444 Sum_probs=60.6
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~ 107 (129)
.+.+.|+||++.| .+|++++|||+||..||.+|+.. +...||.||..+.. ..+.+|..+.++++.+
T Consensus 6 ~~~~~C~IC~~~~----~~Pv~~~CgH~fc~~Ci~~~~~~-----~~~~CP~C~~~~~~-----~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM----KDPVIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLH-----AGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC----SSEEEETTTEEEEHHHHHHHHTT-----TCCBCTTTCCBCSS-----CCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc----cCCEEcCCCCeecHHHHHHHHHH-----CcCCCCCCcCCCCh-----hhCccCHHHHHHHHHH
Confidence 3489999999999 79999999999999999999975 35689999998764 3688899999999998
Q ss_pred Hhhc
Q psy11857 108 SRQR 111 (129)
Q Consensus 108 ~~~~ 111 (129)
.+.+
T Consensus 72 ~~~~ 75 (78)
T 1t1h_A 72 CESN 75 (78)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 7653
No 3
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=102.60 Aligned_cols=71 Identities=25% Similarity=0.703 Sum_probs=61.3
Q ss_pred cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.+.|+||++.| .+|+++ +|||+||..|+.+|+.. ...||.||..+... .+.+|+.+.++++.
T Consensus 20 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~-----~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 20 DDLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTEP-----DLKNNRILDELVKS 84 (99)
T ss_dssp HHHTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGG-----GCEECHHHHHHHHH
T ss_pred CCCCCcccCChhh----CCcCEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCChh-----hCCcCHHHHHHHHH
Confidence 3478999999999 789988 89999999999999985 35899999988753 58899999999999
Q ss_pred HHhhccC
Q psy11857 107 MSRQRRH 113 (129)
Q Consensus 107 ~~~~~~~ 113 (129)
+++.+++
T Consensus 85 ~~~~~~~ 91 (99)
T 2y43_A 85 LNFARNH 91 (99)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9887543
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=105.40 Aligned_cols=68 Identities=25% Similarity=0.526 Sum_probs=58.7
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~ 107 (129)
.+.+.|+||++.| .+|++++|||+||..||..|+.. ....||.||..+... ..+.+|..+.++++.+
T Consensus 50 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 50 EETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRA-----QVFSCPACRYDLGRS----YAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHTBCTTTSSBC----SSEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCCCHHHHHHHHHH
T ss_pred ccCCCCCcCChHH----cCcEEeeCCCcccHHHHHHHHhH-----CcCCCCCCCccCCCC----CCCCCCHHHHHHHHHH
Confidence 3478999999999 79999999999999999999984 456899999988742 3688999999999876
Q ss_pred H
Q psy11857 108 S 108 (129)
Q Consensus 108 ~ 108 (129)
-
T Consensus 117 ~ 117 (124)
T 3fl2_A 117 F 117 (124)
T ss_dssp S
T ss_pred c
Confidence 4
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.68 E-value=3.9e-17 Score=98.45 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~ 108 (129)
+++.||||+++| .+|++++|||+||..||.+|+.. ...||.|+..+.. ..+.+|..+.++++.+.
T Consensus 13 ~~~~CpI~~~~m----~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 13 DEFRDPLMDTLM----TDPVRLPSGTVMDRSIILRHLLN------SPTDPFNRQMLTE-----SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred hheECcccCchh----cCCeECCCCCEECHHHHHHHHhc------CCCCCCCcCCCCh-----HhcchHHHHHHHHHHHH
Confidence 489999999999 89999999999999999999986 3589999998874 36889999999999987
Q ss_pred hhc
Q psy11857 109 RQR 111 (129)
Q Consensus 109 ~~~ 111 (129)
+.+
T Consensus 78 ~~~ 80 (85)
T 2kr4_A 78 REK 80 (85)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 6
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.66 E-value=1.9e-17 Score=105.25 Aligned_cols=80 Identities=24% Similarity=0.549 Sum_probs=61.5
Q ss_pred cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.+.|+||++.| .+|+++ +|||+||..||..|+. ..||.||..+.. ..+.+|+.+.++++.
T Consensus 20 ~~~~~C~IC~~~~----~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~-----~~~~~n~~l~~l~~~ 82 (117)
T 1jm7_B 20 EKLLRCSRCTNIL----REPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWI-----QDLKINRQLDSMIQL 82 (117)
T ss_dssp HHTTSCSSSCSCC----SSCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSC-----SSCCCCHHHHHHHHH
T ss_pred hhCCCCCCCChHh----hCccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCcc-----ccccccHHHHHHHHH
Confidence 3489999999999 799999 9999999999998866 379999998864 368899999999998
Q ss_pred HHhhc----cCCCCCCCccccc
Q psy11857 107 MSRQR----RHIIPKCSTHNSQ 124 (129)
Q Consensus 107 ~~~~~----~~~~~~C~~H~~~ 124 (129)
+.+.+ ......|..|+++
T Consensus 83 ~~~~~~~~~~~~~~~c~~h~~~ 104 (117)
T 1jm7_B 83 CSKLRNLLHDNELSDLKEDKPR 104 (117)
T ss_dssp HHHHHHHHHCCCCCC-------
T ss_pred HHHHHHHHhhcccccccccccc
Confidence 87764 2346789999854
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.66 E-value=6.4e-17 Score=100.25 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~ 108 (129)
+.+.||||+++| .+|++++|||+||..||.+|+.. ...||.|+..+.. ..+.+|..+.++++.+.
T Consensus 28 ~~~~CpI~~~~m----~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 28 DEFRDPLMDTLM----TDPVRLPSGTIMDRSIILRHLLN------SPTDPFNRQTLTE-----SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp TTTBCTTTCSBC----SSEEEETTTEEEEHHHHHHHTTS------CSBCSSSCCBCCT-----TSSEECHHHHHHHHHHH
T ss_pred HhhCCcCccCcc----cCCeECCCCCEEchHHHHHHHHc------CCCCCCCCCCCCh-----hhceECHHHHHHHHHHH
Confidence 489999999999 89999999999999999999975 3589999998774 46899999999999998
Q ss_pred hhc
Q psy11857 109 RQR 111 (129)
Q Consensus 109 ~~~ 111 (129)
..+
T Consensus 93 ~~~ 95 (100)
T 2kre_A 93 REK 95 (100)
T ss_dssp HTT
T ss_pred HHh
Confidence 754
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.65 E-value=1.2e-16 Score=98.69 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=60.7
Q ss_pred CccccccccccccCCCCceEeecCC-chhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~ 107 (129)
+++.||||+++| ++|++++|| |+||+.||.+|+.. ...||+|+..+.. ..+.+|..+.++++.+
T Consensus 21 ~~~~CpI~~~~m----~dPV~~~cG~htf~r~cI~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 21 DEFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTM-----DQIRPNTELKEKIQRW 85 (98)
T ss_dssp TTTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCT-----TTSEECHHHHHHHHHH
T ss_pred HhcCCcCccccc----cCCeECCCCCeEECHHHHHHHHHh------CCCCCCCCCCCCh-----hhceEcHHHHHHHHHH
Confidence 489999999999 899999999 99999999999985 3589999998874 4688999999999999
Q ss_pred Hhhc
Q psy11857 108 SRQR 111 (129)
Q Consensus 108 ~~~~ 111 (129)
.+.+
T Consensus 86 ~~~~ 89 (98)
T 1wgm_A 86 LAER 89 (98)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 8764
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.65 E-value=4.2e-17 Score=101.07 Aligned_cols=71 Identities=20% Similarity=0.500 Sum_probs=60.3
Q ss_pred cCccccccccccccCCCCceEe-ecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.+.|+||++.| .+|+. ++|||+||..||.+|+... ...||.||..+.. ..+..|..+.++++.
T Consensus 20 ~~~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 20 AEVFRCFICMEKL----RDARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQL-----RELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHHTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBCCG-----GGCEECTTHHHHHHH
T ss_pred CCCCCCccCCccc----cCccccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcCCH-----HHhHhhHHHHHHHHH
Confidence 3489999999999 79999 8999999999999999972 2689999999864 357788888888888
Q ss_pred HHhhcc
Q psy11857 107 MSRQRR 112 (129)
Q Consensus 107 ~~~~~~ 112 (129)
+++.+.
T Consensus 86 ~~~l~~ 91 (100)
T 3lrq_A 86 LDTLQL 91 (100)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 887653
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=97.55 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=61.2
Q ss_pred CccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCcccccc--CCcc-eeeCCCCCCCCChhHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPI--CREQ-ITIPRGGVAALPPSFLVNQLL 104 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~~~~~~~~~n~~l~~l~ 104 (129)
+.+.||||+++| .+|++++ |||+||..||.+|+......+....||. |+.. +.. ..+.+|..+.+++
T Consensus 6 ~~~~CPI~~~~~----~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-----~~L~pn~~L~~~I 76 (94)
T 2yu4_A 6 SGFTCPITKEEM----KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-----SDLIQDEALRRAI 76 (94)
T ss_dssp SCCBCTTTCSBC----SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-----GGEEECHHHHHHH
T ss_pred cEeECcCcCchh----cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-----hhCcCCHHHHHHH
Confidence 479999999999 8999996 9999999999999987421124678999 8866 543 3688999999999
Q ss_pred HHHHhhc
Q psy11857 105 DLMSRQR 111 (129)
Q Consensus 105 ~~~~~~~ 111 (129)
+.+.+..
T Consensus 77 ~~~~~~~ 83 (94)
T 2yu4_A 77 ENHNKKR 83 (94)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9998764
No 11
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=105.30 Aligned_cols=68 Identities=28% Similarity=0.580 Sum_probs=59.4
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~ 108 (129)
+.+.|+||++.| .+|++++|||+||..||..|+.. ....||.||..+... ..+.+|..+.++++.+.
T Consensus 77 ~~~~C~IC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 77 QSFMCVCCQELV----YQPVTTECFHNVCKDCLQRSFKA-----QVFSCPACRHDLGQN----YIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHTBCTTTSSBC----SSEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCBCHHHHHHHHHHS
T ss_pred cCCEeecCChhh----cCCEEcCCCCchhHHHHHHHHHh-----CCCcCCCCCccCCCC----CCCCCCHHHHHHHHHHh
Confidence 478999999999 79999999999999999999985 356899999988743 26889999999999876
Q ss_pred h
Q psy11857 109 R 109 (129)
Q Consensus 109 ~ 109 (129)
.
T Consensus 144 p 144 (150)
T 1z6u_A 144 P 144 (150)
T ss_dssp T
T ss_pred h
Confidence 4
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=96.61 Aligned_cols=69 Identities=32% Similarity=0.722 Sum_probs=54.2
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~ 101 (129)
.+.+.|+||++.|...+..|++++|||+||..|+.+|+... .....||.||+.+.. ..+..++.|+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~--~~i~~l~~n~~~~ 81 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRI--TSLTQLTDNLTVL 81 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCC--SSTTTSEECTTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccc--hhHHHHHHHHHHH
Confidence 45789999999995433349999999999999999999873 235799999998764 3556777776543
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.61 E-value=1.1e-16 Score=104.50 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=43.4
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+++++.|+||++.| .+|++++|||+||..||..|+.. ...||.||+.+.
T Consensus 50 ~~~~~~C~iC~~~~----~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 50 LENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKR------KIECPICRKDIK 98 (138)
T ss_dssp HHHHSBCTTTCSBC----SSEEEETTSCEEEHHHHHHHTTT------CSBCTTTCCBCC
T ss_pred ccccCCCcccCccc----CCceECCCCCCccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 34578999999999 79999999999999999999875 458999999875
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.5e-17 Score=97.52 Aligned_cols=65 Identities=28% Similarity=0.622 Sum_probs=51.4
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~ 101 (129)
.+.+.|+||++.| .+|++++|||+||..|+..|+......+....||.||..+... .+.+|+.+.
T Consensus 17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~ 81 (85)
T 2ecw_A 17 KEEVTCPICLELL----KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG-----NLKPNLHVA 81 (85)
T ss_dssp CTTTSCTTTCSCC----SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT-----CCEECSCCC
T ss_pred ccCCCCcCCChhh----CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH-----hCCcCHHHH
Confidence 4578999999999 7999999999999999999998743223478999999987642 455555443
No 15
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.61 E-value=1.5e-16 Score=106.69 Aligned_cols=79 Identities=27% Similarity=0.555 Sum_probs=57.5
Q ss_pred CccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~ 107 (129)
+.+.|+||++.| .+|+.+ +|||+||..||..|+.. ....||.||..+... ..+.+|..+.++++.+
T Consensus 53 ~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDML----KNTMTTKECLHRFCADCIITALRS-----GNKECPTCRKKLVSK----RSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCCSG----GGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHh----hCcCEeCCCCChhHHHHHHHHHHh-----CcCCCCCCCCcCCCc----ccCCcCHHHHHHHHHH
Confidence 467999999999 789988 89999999999999985 356899999987533 3578899999999888
Q ss_pred HhhccCCCCCCCccccc
Q psy11857 108 SRQRRHIIPKCSTHNSQ 124 (129)
Q Consensus 108 ~~~~~~~~~~C~~H~~~ 124 (129)
.... ..|+.|+++
T Consensus 120 ~~~~----~~~~~~~e~ 132 (165)
T 2ckl_B 120 YPSR----DEYEAHQER 132 (165)
T ss_dssp C----------------
T ss_pred Hcch----hHHHHHHHH
Confidence 6532 225666543
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.60 E-value=3.2e-16 Score=98.21 Aligned_cols=71 Identities=18% Similarity=0.460 Sum_probs=58.3
Q ss_pred cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.+.|+||++.| .+|+++ +|||+||..||..|+.. ...||.||..+... ..+..+..|..+.++++.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~-~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKT-RPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSS-CGGGGEEECHHHHHHHHH
T ss_pred CCcCCCccCChHH----hCcCEeCCCCChhhHHHHHHHHHh------CCcCcCCCcccccc-CcccccCcCHHHHHHHHH
Confidence 3489999999999 799998 99999999999999886 36899999987632 222357789999999887
Q ss_pred HHh
Q psy11857 107 MSR 109 (129)
Q Consensus 107 ~~~ 109 (129)
+..
T Consensus 82 ~~~ 84 (108)
T 2ckl_A 82 LVP 84 (108)
T ss_dssp HST
T ss_pred Hhh
Confidence 754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=90.98 Aligned_cols=57 Identities=25% Similarity=0.506 Sum_probs=47.9
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLV 100 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l 100 (129)
.+.+.|+||++.| .+|++++|||+||..|+.+|+.. ...||.||..+. ..+.+|..+
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~------~~~~~~~~l 69 (81)
T 2csy_A 13 EIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFRA------TPRCYICDQPTG------GIFNPAKEL 69 (81)
T ss_dssp CCCSBCSSSCSBC----CSEEECTTSCEEEHHHHHHHHHH------CSBCSSSCCBCC------SCCEECHHH
T ss_pred CCCCCCcCCCchh----cCeeEccCCCHhHHHHHHHHHHC------CCcCCCcCcccc------ccCCcHHHH
Confidence 3478999999999 79999999999999999999986 458999999886 246666443
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.59 E-value=7.5e-16 Score=90.36 Aligned_cols=52 Identities=21% Similarity=0.575 Sum_probs=44.8
Q ss_pred cCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~ 87 (129)
.+.+.|+||++.| .+|++++ |||+||..||.+|+... ....||.||+.+..+
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLES----DEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCC----TTCEECSSSCCEECTTHHHHHHHHS----SSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHH----hCCeEcCCCCCHHHHHHHHHHHHhc----CCCcCCCCCCcCCCc
Confidence 3489999999999 7999999 99999999999999872 356899999975533
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-17 Score=98.25 Aligned_cols=65 Identities=28% Similarity=0.608 Sum_probs=50.7
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~ 101 (129)
.+.+.|+||++.| .+|+.++|||+||..|+..|+......+....||.||..+... .+.+|+.+.
T Consensus 17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~ 81 (85)
T 2ecv_A 17 KEEVTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE-----NIRPNRHVA 81 (85)
T ss_dssp CCCCCCTTTCSCC----SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS-----SCCCSCCCC
T ss_pred cCCCCCCCCCccc----CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH-----hcCccHHHH
Confidence 4578999999999 7899999999999999999988632123467999999988743 455555443
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-17 Score=98.27 Aligned_cols=65 Identities=23% Similarity=0.554 Sum_probs=50.0
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccC-CCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR-ETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~ 101 (129)
.+.+.|+||++.| .+|++++|||+||..|+.+|+..... .+....||.||..+... .+.+|+.+.
T Consensus 10 ~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~l~~n~~l~ 75 (79)
T 2egp_A 10 QEEVTCPICLELL----TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE-----HLQANQHLA 75 (79)
T ss_dssp CCCCEETTTTEEC----SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS-----GGGTCSSSC
T ss_pred ccCCCCcCCCccc----CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh-----hCCcCHHHH
Confidence 4589999999999 78999999999999999998875211 12367899999988742 455555443
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=5.5e-16 Score=97.47 Aligned_cols=51 Identities=29% Similarity=0.813 Sum_probs=44.4
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+.+.|+||++.| .+|++++|||+||..|+..|+... .....||.||..+..
T Consensus 20 ~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCC----SSCCBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhh----cCeEECCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCH
Confidence 478999999999 799999999999999999999863 234789999998774
No 22
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.55 E-value=6.4e-16 Score=97.80 Aligned_cols=72 Identities=24% Similarity=0.506 Sum_probs=55.9
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCC--CCCCCCChhHHHHHHHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR--GGVAALPPSFLVNQLLD 105 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~n~~l~~l~~ 105 (129)
.+++.|+||++.| .+|++++|||+||..||.+|+.. ....||.||..+.... .....+..|..+.++++
T Consensus 13 ~~~~~C~iC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~ 83 (115)
T 3l11_A 13 LSECQCGICMEIL----VEPVTLPCNHTLCKPCFQSTVEK-----ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ 83 (115)
T ss_dssp HHHHBCTTTCSBC----SSCEECTTSCEECHHHHCCCCCT-----TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred CCCCCCccCCccc----CceeEcCCCCHHhHHHHHHHHhH-----CcCCCCCCCcccCccccccccccchhhHHHHHHHH
Confidence 3479999999999 79999999999999999998864 3578999999876310 00135667788888877
Q ss_pred HHH
Q psy11857 106 LMS 108 (129)
Q Consensus 106 ~~~ 108 (129)
.+.
T Consensus 84 ~~~ 86 (115)
T 3l11_A 84 KHY 86 (115)
T ss_dssp HHS
T ss_pred HHC
Confidence 653
No 23
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=3e-15 Score=107.17 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=59.8
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~ 108 (129)
+.+.||||+++| .+|++++|||+||..||.+|+... ...||.|+..+.. ..+.+|..+.++++.+.
T Consensus 207 ~~~~c~i~~~~~----~dPv~~~~gh~f~~~~i~~~~~~~-----~~~cP~~~~~~~~-----~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 207 DYLCGKISFELM----REPCITPSGITYDRKDIEEHLQRV-----GHFNPVTRSPLTQ-----EQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp STTBCTTTCSBC----SSEEECSSCCEEETTHHHHHHHHT-----CSSCTTTCCCCCG-----GGCEECHHHHHHHHHHH
T ss_pred cccCCcCcCCHh----cCCeECCCCCEECHHHHHHHHHHC-----CCCCcCCCCCCch-----hcCcccHHHHHHHHHHH
Confidence 479999999999 899999999999999999999872 2349999998864 36889999999999987
Q ss_pred hhc
Q psy11857 109 RQR 111 (129)
Q Consensus 109 ~~~ 111 (129)
..+
T Consensus 273 ~~~ 275 (281)
T 2c2l_A 273 SEN 275 (281)
T ss_dssp TTC
T ss_pred HHC
Confidence 643
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=84.16 Aligned_cols=47 Identities=30% Similarity=0.910 Sum_probs=40.7
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C 80 (129)
..+.+.|+||++.| .+|++++|||+||..||.+|+... +....||.|
T Consensus 17 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC----SSCEECTTSSEECHHHHHHHHHHC---SSCCCCSCC
T ss_pred CccCCCCCcCCchh----CCeEEeCCCCcchHHHHHHHHHcC---CCCCcCcCC
Confidence 34589999999999 799999999999999999999862 246789987
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=87.49 Aligned_cols=53 Identities=26% Similarity=0.830 Sum_probs=45.0
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
..+.+.|+||++.| .+|++++|||+||..|+..|+... .....||.||+.+..
T Consensus 17 ~~~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBC----SSEEECTTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCccc----CCeEEcCCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence 34578999999999 799999999999999999998732 246789999998764
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.53 E-value=6.9e-15 Score=99.55 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=60.4
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~ 108 (129)
+.+.||||+++| .+|++++|||+||..||..|+... +. .||.|+..+.. ..+.+|..+.++++.+.
T Consensus 105 ~~f~CPI~~elm----~DPV~~~~Ghtfer~~I~~~l~~~----~~-tcP~t~~~l~~-----~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 105 DYLCGKISFELM----REPCITPSGITYDRKDIEEHLQRV----GH-FDPVTRSPLTQ-----DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp GGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHT----CS-BCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred HhhcccCccccC----CCCeECCCCCEECHHHHHHHHHhC----CC-CCCCCcCCCCh-----hhCcchHHHHHHHHHHH
Confidence 589999999999 899999999999999999999872 22 79999998764 36899999999999987
Q ss_pred hhc
Q psy11857 109 RQR 111 (129)
Q Consensus 109 ~~~ 111 (129)
..+
T Consensus 171 ~~~ 173 (179)
T 2f42_A 171 QEN 173 (179)
T ss_dssp HHC
T ss_pred HHC
Confidence 654
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.53 E-value=4e-15 Score=94.64 Aligned_cols=67 Identities=22% Similarity=0.448 Sum_probs=54.1
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
..+.+.|+||++.+ .+|++++|||+||..||..|+... ...||.||..+... .+.++..+.+++..
T Consensus 15 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~-----~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 15 LESKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN-----QLFPDNFAKREILS 80 (118)
T ss_dssp CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred CCCCCCCCcCChhh----cCeEECCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCHH-----hcccCHHHHHHHcc
Confidence 44589999999999 799999999999999999999873 34899999988742 45567767666654
Q ss_pred H
Q psy11857 107 M 107 (129)
Q Consensus 107 ~ 107 (129)
+
T Consensus 81 l 81 (118)
T 3hct_A 81 L 81 (118)
T ss_dssp S
T ss_pred c
Confidence 3
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-15 Score=85.33 Aligned_cols=49 Identities=29% Similarity=0.741 Sum_probs=43.2
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.+ .+|+.++|||+||..|+.+|+.. ....||.||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAALLSS-----SSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEE----SSCCCCSSSCCCCHHHHHHHHTT-----SSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHh----cCeeECCCCCHHHHHHHHHHHHh-----CcCCCCCCCcCCC
Confidence 4579999999999 79999999999999999999963 3568999999876
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.6e-15 Score=99.36 Aligned_cols=50 Identities=28% Similarity=0.612 Sum_probs=43.9
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+++.+.|+||++.| .+|++++|||+||..||.+|+.. ....||.||..+.
T Consensus 28 l~~~~~C~IC~~~~----~~pv~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVL----RRPFQAQCGHRYCSFCLASILSS-----GPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHGGG-----SCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhh----cCcEECCCCCccCHHHHHHHHhc-----CCCCCCCCCCccc
Confidence 45689999999999 89999999999999999999875 3568999998754
No 30
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7e-15 Score=85.67 Aligned_cols=49 Identities=24% Similarity=0.612 Sum_probs=43.3
Q ss_pred cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
++.+.|+||++.| .+|+++ +|||+||..||.+|+.. ...||.||+.+..
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYL----IDATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCC----SSCEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHH----HCcCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCc
Confidence 4589999999999 789987 89999999999999976 4589999998764
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.51 E-value=8.8e-15 Score=92.67 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=44.1
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.+.+.|+||++.+ .+|+.++|||+||..||.+|+.. ....||.||..+..
T Consensus 21 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHIL----ADPVETSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHh----cCcEEcCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCH
Confidence 3478999999999 79999999999999999999987 24589999998774
No 32
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=84.08 Aligned_cols=47 Identities=32% Similarity=0.779 Sum_probs=42.0
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+.+.|+||++.+ .+|+.++|||+||..||.+|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWL------GKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBC----SSEEEETTTEEEEHHHHHHCTTC------SSBCSSSCCBCC
T ss_pred CCCCCccCCccc----CCCEEccCCCHHHHHHHHHHHHC------CCcCcCcCchhC
Confidence 478999999999 79999999999999999999875 368999998765
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=3e-14 Score=81.35 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=41.2
Q ss_pred Cccccccccc-cccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~-~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+++.|+||++ .|.+....+++++|||+||..|+.+|+.. ....||.||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----CCCcCCCCCCcccc
Confidence 3688999999 88422222257899999999999999875 35689999998763
No 34
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=4.9e-15 Score=82.41 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=42.3
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCC
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGV 91 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 91 (129)
+.+.|+||++.| .+|++++|||+||..|+.. ....||.||+.+..+.+++
T Consensus 5 ~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 5 QFLRCQQCQAEA----KCPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSC----BCCSCSTTSCCSBTTTCSS---------SSSSCSSCCSSSSCCSSCC
T ss_pred cCCCceEeCCcc----CCeEEcCCCCcccHHHHcc---------CCCCCCcCCcEeecCCcCc
Confidence 478999999999 7999999999999999865 2458999999988765443
No 35
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.4e-14 Score=100.77 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=60.2
Q ss_pred CccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCcccccc--CCcceeeCCCCCCCCChhHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPI--CREQITIPRGGVAALPPSFLVNQLLD 105 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~~n~~l~~l~~ 105 (129)
.++.||||+++| .+|++. .|||+||..||.+|+.. ++.+.||. |++.+.. +.+.+|..+.++++
T Consensus 180 ~el~CPIcl~~f----~DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~-----~dL~pN~~L~~lve 246 (267)
T 3htk_C 180 IELTCPITCKPY----EAPLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSM-----RDFVRDPIMELRCK 246 (267)
T ss_dssp CCSBCTTTSSBC----SSEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECG-----GGEEECHHHHHHHH
T ss_pred eeeECcCccCcc----cCCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCch-----hhCCcCHHHHHHHH
Confidence 489999999999 899986 89999999999999876 34689999 9998775 47899999999998
Q ss_pred HHHhh
Q psy11857 106 LMSRQ 110 (129)
Q Consensus 106 ~~~~~ 110 (129)
.++..
T Consensus 247 ~~k~r 251 (267)
T 3htk_C 247 IAKMK 251 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=4.4e-14 Score=77.90 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=43.0
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|+||++.|..++..++.++|||.||..|+.+|+.. ...||.||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 367899999999654556889999999999999999997 268999998653
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=2.6e-14 Score=82.78 Aligned_cols=52 Identities=25% Similarity=0.608 Sum_probs=41.8
Q ss_pred CccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+.+.|+||++.|.. +...++.++|||+||..|+.+|+.. ...||.||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc------CCCCCCCCCccCh
Confidence 47899999999941 1122288999999999999999987 3589999998773
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-14 Score=81.82 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=41.4
Q ss_pred cCccccccccccccCC---CCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGG---EHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~---~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.|... .+.++.++|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccC
Confidence 3478999999999421 122388999999999999999987 348999998764
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.5e-14 Score=77.96 Aligned_cols=46 Identities=26% Similarity=0.780 Sum_probs=39.1
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C 80 (129)
.+.+.|+||++.+ .+|++++|||+||..||.+|+... .....||.|
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBC----SSCCCCSSCCCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred ccCCCCccCCccc----CccEeCCCCCccCHHHHHHHHHhc---CCCCCCCCC
Confidence 3578999999999 789999999999999999997642 246789987
No 40
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.42 E-value=7e-14 Score=93.97 Aligned_cols=66 Identities=23% Similarity=0.440 Sum_probs=52.6
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
+.+.+.|+||++.| .+|++++|||+||..||.+|+... ...||.||..+... .+.++..+.+++..
T Consensus 15 ~~~~~~C~IC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~-----~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 15 LESKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN-----QLFPDNFAKREILS 80 (170)
T ss_dssp CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred CCCCCCCCCCChhh----cCcEECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcchh-----hhhhhHHHHHHHhh
Confidence 44589999999999 799999999999999999999862 34899999987643 34456666665553
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-14 Score=81.47 Aligned_cols=52 Identities=25% Similarity=0.730 Sum_probs=41.6
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+...|+||++.|..+ ...+.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCC
Confidence 34578999999999421 12378899999999999999987 348999998775
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=7.5e-14 Score=79.11 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=41.2
Q ss_pred CccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+.+.|+||++.+.. ..+.++.++|||.||..|+.+|+.. ...||.||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCC
Confidence 36789999999942 1123388999999999999999987 458999998876
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=77.75 Aligned_cols=52 Identities=27% Similarity=0.659 Sum_probs=42.3
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.....|+||++.|.. ...++.++|||.||..||.+|+.. ...||.||..+..
T Consensus 12 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccC
Confidence 346889999998842 235778999999999999999987 2369999998763
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=1.4e-13 Score=79.06 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=40.6
Q ss_pred CccccccccccccCCCCce-EeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p-~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|+||++.+ .+| +.++|||.||..|+.+|+.. ...||.||..+.
T Consensus 4 ~~~~C~IC~~~~----~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDP----SNYSMALPCLHAFCYVCITRWIRQ------NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCC----CSCEEETTTTEEESTTHHHHHHHH------SCSTTTTCCCCC
T ss_pred CCCCCeeCCccc----cCCcEecCCCCeeHHHHHHHHHhC------cCcCcCCChhhH
Confidence 467899999999 565 78899999999999999986 358999998865
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=82.84 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=41.6
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+...|+||++.|..+ ..++.++|||.||..||..|+.. ...||.||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQK------SGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTT------TCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHc------CCcCcCcCccCC
Confidence 3578899999998421 23778999999999999999976 348999998765
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.37 E-value=1.5e-13 Score=81.33 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=40.9
Q ss_pred cCccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
++++.||||++.++. .++.+++ |||+||..|+.+++.. ....||.||+.+..
T Consensus 9 ~~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~-----~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTS-----SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence 457899999998852 2344555 9999999999988754 35789999998763
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=1.6e-13 Score=75.69 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=40.6
Q ss_pred cCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
++...|+||++.|..+ ..++.++ |||.||..|+.+|+.. ...||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTT------CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHc------CCcCcCCCCEeE
Confidence 3478899999999432 2367777 9999999999999875 458999998753
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=2.7e-13 Score=79.89 Aligned_cols=52 Identities=31% Similarity=0.598 Sum_probs=41.5
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.+...|+||++.|..+ ...+.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLEQ------HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHTT------TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHHc------CCcCcCcCCccCC
Confidence 3478999999999421 23356799999999999999875 3589999998874
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=4.4e-13 Score=86.08 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=41.9
Q ss_pred cCccccccccccccCCCCce-------EeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTP-------KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.| .+| +.++|||+||..||.+|+.. ...||.||+.+.
T Consensus 5 ~~~~~C~IC~~~~----~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGY----SEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBH----HHHHHTTCCEEEETTCCEEEHHHHHHHHTT------CSBCTTTCCBCT
T ss_pred CCCCCCcccChhh----hCccccccCeEecCCCChhhHHHHHHHHHh------CCCCCCCCCcCc
Confidence 3578999999999 466 89999999999999999986 348999999876
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=76.25 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=40.0
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|+||++.|..+ ...+.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHc------CCcCCCcCcccc
Confidence 468899999999421 22345699999999999999987 238999999876
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.5e-13 Score=78.45 Aligned_cols=47 Identities=32% Similarity=0.771 Sum_probs=40.7
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.+ .+ ++++|||.||..|+.+|+.. ...||.||..+.
T Consensus 13 ~~~~~C~IC~~~~----~~-~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGR----AD-LILPCAHSFCQKCIDKWSDR------HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSC----CS-EEETTTEEECHHHHHHSSCC------CSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCc----cC-cccCCCCcccHHHHHHHHHC------cCcCCCcCCccc
Confidence 3478999999999 45 89999999999999998774 568999998876
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.24 E-value=1.3e-12 Score=76.52 Aligned_cols=44 Identities=27% Similarity=0.705 Sum_probs=39.0
Q ss_pred cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.+ .+|+.++|||. ||..|+..| ..||.||+.+.
T Consensus 22 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV----------DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC----------SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC----------ccCCCcCcCcc
Confidence 3478999999999 89999999999 999999766 38999998875
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=4e-12 Score=80.02 Aligned_cols=56 Identities=25% Similarity=0.494 Sum_probs=40.9
Q ss_pred ccccccccccccCCC--------------CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 30 FLTCGTCLCMYDGGE--------------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~--------------~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+..|+||++.|..+. ...+.++|||.||..||..|+.... ......||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCC
Confidence 468999999994211 1122678999999999999996521 1235689999988763
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.7e-13 Score=77.35 Aligned_cols=44 Identities=27% Similarity=0.681 Sum_probs=38.0
Q ss_pred cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.+.|+||++.+ .+|+.++|||. ||..|+.+ ...||+||..+.
T Consensus 23 ~~~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRN----IAIVFVPCGHLVTCKQCAEA----------VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHH----------CSBCTTTCCBCC
T ss_pred CCCCCCCcCCCCC----CCEEEecCCCHHHHHHHhhC----------CCCCccCCceec
Confidence 3478999999999 79999999999 99999953 248999999876
No 55
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1.4e-12 Score=79.58 Aligned_cols=74 Identities=18% Similarity=0.424 Sum_probs=48.6
Q ss_pred CccccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCC--Ccccccc--CCcceeeCCCCCCCCChhHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRET--GTLRCPI--CREQITIPRGGVAALPPSFLVN 101 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~~~n~~l~ 101 (129)
+.+.|+||++.+ ..|.++ +|||.||..|+.+++......+ ..+.||. |+....++. ....+....
T Consensus 4 ~~~~C~IC~~~~----~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~----~~i~~ll~~ 75 (94)
T 1wim_A 4 GSSGCKLCLGEY----PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE----NEIECMVAA 75 (94)
T ss_dssp SBCCCSSSCCCC----BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH----HHHHHHSCH
T ss_pred CCcCCcccCccc----ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH----HHHHHHCCH
Confidence 468899999998 455443 6999999999999987642112 3579999 998732221 122233334
Q ss_pred HHHHHHHhh
Q psy11857 102 QLLDLMSRQ 110 (129)
Q Consensus 102 ~l~~~~~~~ 110 (129)
++.++|.+.
T Consensus 76 ~~~~ky~~~ 84 (94)
T 1wim_A 76 EIMQRYKKL 84 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556666553
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=73.64 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=39.0
Q ss_pred ccccccccccccC----------CCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 30 FLTCGTCLCMYDG----------GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 30 ~l~C~iC~~~~~~----------~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+..|+||++.|.+ ++..++.++ |||.|+..||.+|+.. ...||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ------NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT------CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh------CCCCCCcCCCcch
Confidence 5678888888842 223355665 9999999999999886 3489999988653
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.15 E-value=1.7e-11 Score=69.51 Aligned_cols=47 Identities=26% Similarity=0.694 Sum_probs=40.4
Q ss_pred CccccccccccccCCCCceEee--cCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
....|+||++.+ ++++++ ||||. ||..|+.+++.. ...||+||+.+.
T Consensus 6 ~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA------GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT------TCBCTTTCCBCC
T ss_pred cCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh------CCcCCCcCchhh
Confidence 367899999998 788888 99998 999999998865 358999999875
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=2.1e-11 Score=91.13 Aligned_cols=50 Identities=32% Similarity=0.686 Sum_probs=43.1
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.....|+||++.+ .+|+.++|||.||..|+..|... ....||.||..+..
T Consensus 330 ~~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence 3357999999999 79999999999999999999884 24589999998764
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.13 E-value=1.9e-11 Score=69.49 Aligned_cols=47 Identities=21% Similarity=0.603 Sum_probs=40.5
Q ss_pred CccccccccccccCCCCceEee--cCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
++..|+||++.+ ++++.+ ||||. ||..|+.+++.. ...||+||+.+.
T Consensus 7 ~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKR------NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHT------TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHc------CCcCCCcCcchh
Confidence 367899999999 788887 99999 899999998875 347999998765
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.4e-11 Score=77.90 Aligned_cols=53 Identities=25% Similarity=0.614 Sum_probs=42.5
Q ss_pred ccCccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+...|+||++.|.. ..+.++.++|||.||..|+.+|+.. ...||.||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH------CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc------CCCCCCCCCcCC
Confidence 3457899999999941 1222388899999999999999987 459999998876
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.02 E-value=1.2e-10 Score=72.59 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=40.1
Q ss_pred CccccccccccccCC-------------CC-ceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDGG-------------EH-TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~-------------~~-~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+...|+||++.|.+. +. ..+.++|||.|+..||.+|+.. ...||+||+.+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcCCCCccee
Confidence 467899999998522 11 1345789999999999999886 4589999998654
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=66.95 Aligned_cols=45 Identities=33% Similarity=0.710 Sum_probs=38.5
Q ss_pred ccCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+...|.||++.+ .+++.+||||. ||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY----------FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH----------CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc----------CCCCCCCCcchh
Confidence 34578999999999 89999999999 99999973 248999998875
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.01 E-value=4.8e-11 Score=70.60 Aligned_cols=44 Identities=27% Similarity=0.760 Sum_probs=38.1
Q ss_pred CccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
+...|+||++.+ .+++.+||||. ||..|+..+ ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred CCCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence 467899999999 89999999999 999999643 389999988763
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7.9e-10 Score=65.46 Aligned_cols=53 Identities=30% Similarity=0.631 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCceEeecCC-----chhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-----H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~ 87 (129)
+...|.||++.|+. ..++++||. |.|+..||.+|+... +...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQWIKSS----DTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHHHHHHH----CCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHHHHhhC----CCCCCCCCCCeeecC
Confidence 36789999998853 356788996 999999999999973 356899999988753
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.86 E-value=2.5e-10 Score=84.43 Aligned_cols=44 Identities=34% Similarity=0.825 Sum_probs=39.0
Q ss_pred cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
++.+.|+||++.+ .+|+.+||||. ||..|+..+ ..||.||..+.
T Consensus 293 ~~~~~C~IC~~~~----~~~v~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKE----VSVVFIPCGHLVVCQECAPSL----------RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSB----CCEEEETTCCEEECTTTGGGC----------SBCTTTCCBCC
T ss_pred cCCCCCCccCCcC----CceEEcCCCChhHhHHHHhcC----------CcCCCCCCCcc
Confidence 3578999999999 89999999999 999999755 37999999876
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.86 E-value=1.7e-09 Score=60.83 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=41.0
Q ss_pred ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.+.|||+++.+ .+|+++ ++||+|++.||.+|+..+ ..||..+..+..
T Consensus 3 ~~~CpIs~~~m----~dPV~~~~sG~~yer~~I~~~l~~~------~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVP----RRPVLSPKSRTIFEKSLLEQYVKDT------GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHHHHHH------SBCTTTCCBCCG
T ss_pred eEEecCCCCCC----CCCEEeCCCCcEEcHHHHHHHHHhC------CCCcCCcCCCCh
Confidence 47899999999 799999 899999999999999873 259999988763
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.72 E-value=1.5e-09 Score=68.68 Aligned_cols=51 Identities=22% Similarity=0.426 Sum_probs=0.9
Q ss_pred CccccccccccccC-------------CCCceEe-ecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDG-------------GEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~-------------~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+.-.|+||++.|.. ++..+++ ++|+|.|+..||.+|+.. ...||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------CCcCCCCCCeee
Confidence 35689999999952 1122333 579999999999999986 458999998865
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=7.6e-08 Score=55.97 Aligned_cols=53 Identities=21% Similarity=0.502 Sum_probs=40.1
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.+....|.||.+.+..+ -.-..|+|.|...||.+|+... ....||.|+.....
T Consensus 12 ~~~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~----~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN----AEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC----SSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc----CCCCCCCCcCcCCC
Confidence 34467899999999422 1222799999999999999762 34689999987663
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.49 E-value=6.5e-08 Score=58.80 Aligned_cols=46 Identities=24% Similarity=0.657 Sum_probs=38.2
Q ss_pred ccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.|++|.-.+. .-.+++||.|.||..|+..|... ....||.|+..+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~-----~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKK-----GDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCS
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhc-----cCCCCcCcCCeee
Confidence 5899998885 45678999999999999998875 3568999997765
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.21 E-value=7.1e-07 Score=49.75 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=38.7
Q ss_pred CccccccccccccCCCCceEeecCC--c---hhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCS--H---TVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~Cg--H---~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|.||++.. ..+.++||. + .|...|+.+|+... +...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~----~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~----~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTIS----RNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHH----TCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC----CCceecCcCCCCchhhhHHHHHHHHHHhC----CCCccCCCCCeee
Confidence 467899999875 456778865 4 79999999999873 4579999998765
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.03 E-value=1.9e-06 Score=63.41 Aligned_cols=58 Identities=19% Similarity=0.461 Sum_probs=42.1
Q ss_pred CccccccccccccCCCCceEe----ecCCchhHHHhHHHHHHhccCC-----CCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCLSRIAASQTRE-----TGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~----l~CgH~fC~~Cl~~~~~~~~~~-----~~~~~CP~Cr~~~~~ 86 (129)
....|+||+..+...+..|.. ..|||.|...|+.+|+...... .....||.||+.+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 467899999998643444533 4699999999999999863210 112579999998773
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.54 E-value=2.6e-05 Score=47.48 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=27.1
Q ss_pred CccccccccccccCCCCceEe--ecCCchhHHHhHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKL--LPCSHTVCLHCLSRI 64 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~--l~CgH~fC~~Cl~~~ 64 (129)
+++.|+||.+.+. ..|+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~---~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA---QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC---CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC---CCceEECCcCChHHhHHHCHHH
Confidence 3689999997532 67777 899999999999973
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.75 E-value=0.0014 Score=54.10 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=58.7
Q ss_pred CccccccccccccCCCCceEeecCC-chhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~ 107 (129)
+++.|||=++++ ++|++++-| +||=+..|.+|+.. ..+||+=|..+.. ..+.+|+.++..++.+
T Consensus 890 ~~F~cPIs~~lM----~DPVilpsG~~TydR~~I~~wl~~------~~tdP~Tr~~L~~-----~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 890 DEFLDPLMYTIM----KDPVILPASKMNIDRSTIKAHLLS------DSTDPFNRMPLKL-----EDVTPNEELRQKILCF 954 (968)
T ss_dssp GGGBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCG-----GGCEECHHHHHHHHHH
T ss_pred HHhCCcchhhHH----hCCeEcCCCCEEECHHHHHHHHhc------CCCCCCCCCCCCc-----ccccccHHHHHHHHHH
Confidence 379999999999 899999997 69999999999976 3389998888774 3688999999999998
Q ss_pred Hhhc
Q psy11857 108 SRQR 111 (129)
Q Consensus 108 ~~~~ 111 (129)
...+
T Consensus 955 ~~~~ 958 (968)
T 3m62_A 955 KKQK 958 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.65 E-value=0.0017 Score=45.54 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=37.8
Q ss_pred ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
...|.+|.++.. .-..- .|+|.|...|+..|+.. .....||.|+....
T Consensus 180 i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~~~~~----~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLI----QGQSCETCGIRMHLPCVAKYFQS----NAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCS----SCEECSSSCCEECHHHHHHHTTT----CSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHh----CCcccCccChHHHHHHHHHHHHh----CCCCCCCCCCCCCC
Confidence 568999999984 22333 39999999999999876 34568999998755
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.15 E-value=0.018 Score=33.40 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=33.6
Q ss_pred ccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C 80 (129)
.+.|.+|.+.+.. ..-+.-| =+|.||..|-...++.+.. +....||.-
T Consensus 15 ~l~CtlC~erLEd--tHFVQCPsv~~HkFCFpCsr~sIk~q~~-~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLED--THFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSS--TTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTTS
T ss_pred eeEeecchhhhcc--CceeeCCCccCCeeeccccHHHHHhcCC-CCcEECCCC
Confidence 6899999999831 2223333 5899999999998887643 345666654
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.60 E-value=0.021 Score=34.17 Aligned_cols=47 Identities=26% Similarity=0.585 Sum_probs=35.3
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 86 (129)
.-+.|..|.... +-.+-=..|-+|..|+...+.. .-.||+|.+.+..
T Consensus 27 G~~nCKsCWf~~-----k~LV~C~dHYLCl~CLtlmL~~------SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFEN-----KGLVECNNHYLCLNCLTLLLSV------SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCC-----SSEEECSSCEEEHHHHHHTCSS------SSEETTTTEECCC
T ss_pred CcccChhhcccc-----CCeeeecchhhHHHHHHHHHhh------ccCCcccCCcCCc
Confidence 368899999766 2333346788999999988776 5589999987653
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.071 Score=39.61 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=47.2
Q ss_pred ccccccccccccCCCCceEee-cCCchhHHH--hHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLH--CLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~--Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.||+=...+ ..|+.- .|.|.-|.. =+...... ...+.||+|.+.+.. ++|..+..+.++++.
T Consensus 249 SL~CPlS~~ri----~~PvRg~~C~HlQCFDl~sfL~~~~~----~~~W~CPIC~k~~~~-----~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRM----KYPSKSINCKHLQCFDALWFLHSQLQ----IPTWQCPVCQIDIAL-----ENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBC----SSEEEETTCCSSCCEEHHHHHHHHHH----SCCCBCTTTCCBCCG-----GGEEEBHHHHHHHTT
T ss_pred eecCCCccccc----cccCcCCcCCCcceECHHHHHHHhhc----CCceeCCCCCcccCH-----HHeeEcHHHHHHHHh
Confidence 68999999999 688755 599985543 34444333 468999999988775 367777777777664
Q ss_pred H
Q psy11857 107 M 107 (129)
Q Consensus 107 ~ 107 (129)
.
T Consensus 316 ~ 316 (371)
T 3i2d_A 316 C 316 (371)
T ss_dssp S
T ss_pred c
Confidence 4
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.96 E-value=0.084 Score=39.09 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=46.9
Q ss_pred ccccccccccccCCCCceEee-cCCchhHH--HhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCL--HCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~--~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~ 106 (129)
.+.||+=...+ ..|..- .|.|.-|. .=+...... ...+.||+|.+.+.. ++|..+..+.+++..
T Consensus 215 SL~CPlS~~ri----~~P~Rg~~C~HlqCFDl~sfL~~~~~----~~~W~CPiC~k~~~~-----~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRL----TIPCRAVTCTHLQCFDAALYLQMNEK----KPTWICPVCDKKAAY-----ESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBC----SSEEEETTCCCCCCEEHHHHHHHHHH----SCCCBCTTTCSBCCG-----GGEEEBHHHHHHHTT
T ss_pred eeeCCCcccee----ccCCcCCCCCCCccCCHHHHHHHHhh----CCCeECCCCCcccCH-----HHeEEcHHHHHHHHh
Confidence 68999999999 678755 69998444 334444333 468999999998775 357777777777664
Q ss_pred H
Q psy11857 107 M 107 (129)
Q Consensus 107 ~ 107 (129)
.
T Consensus 282 ~ 282 (360)
T 4fo9_A 282 C 282 (360)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.50 E-value=0.6 Score=27.53 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=36.6
Q ss_pred ccccccccccccC-CCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~-~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.-.|.||.+..-. .+-++.+. .|+-..|+.|+.--... ....||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-----G~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-----GTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-----SCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-----cCccccccCCccc
Confidence 4679999998541 22234443 58889999999765554 5678999998875
No 80
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=84.93 E-value=0.4 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.5
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~ 62 (129)
.-.|.+|...|+-..+.-.=-.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 357999999986332333334799999999974
No 81
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.86 E-value=0.34 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.2
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
...|.+|...|+-..+.-.--.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999953323333347999999999754
No 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.43 E-value=0.39 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=25.0
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
...|.+|...|+-..+.-.=-.||..||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 5689999999964333333447999999999754
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=84.25 E-value=0.36 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=24.6
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
...|.+|...|+-..+.-.=-.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4579999999963333333347999999999754
No 84
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=83.61 E-value=0.43 Score=28.12 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=25.1
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~ 64 (129)
...|.+|...|+...+.-.--.||+.||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45799999998633333334479999999997543
No 85
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.98 E-value=0.45 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
...|.+|...|+...+.-.=-.||..||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999999863323333347999999999754
No 86
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.81 E-value=0.5 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=24.4
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
...|.+|...|+...+.--=-.||..||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4679999999863333333447999999999643
No 87
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=79.96 E-value=0.45 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.536 Sum_probs=32.2
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
...|..|...|+-..+.-.--.||..||..|....... ...|-.|-....
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~------vRVC~~C~~~~~ 68 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG------PRLCLLCQRFRA 68 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC------ceECHHHHHHHh
Confidence 46899999988633333344579999999997654332 457888865443
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.57 E-value=0.45 Score=24.69 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=28.3
Q ss_pred ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
.|.+|.+.-+ ...+++ .|...|...|+..-+..-+ .....||.|...
T Consensus 2 ~C~vC~~~~~---~~~ll~Cd~C~~~~H~~Cl~p~l~~~P--~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGE---DDKLILCDECNKAFHLFCLRPALYEVP--DGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSC---CSCCEECTTTCCEECHHHHCTTCCSCC--SSCCSCTTTSCC
T ss_pred CCCCCCCCCC---CCCEEECCCCChhhCcccCCCCcCCCC--CCcEECcCcccc
Confidence 4777876432 122233 4777888999864333221 357889999753
No 89
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.92 E-value=0.71 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=25.2
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
+...|.+|...|+-..+.-.--.||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999999863333333447999999999654
No 90
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=76.19 E-value=0.49 Score=24.39 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=10.1
Q ss_pred cccccccccccc
Q psy11857 30 FLTCGTCLCMYD 41 (129)
Q Consensus 30 ~l~C~iC~~~~~ 41 (129)
...|.+|.-+|+
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 468999999996
No 91
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.73 E-value=1.1 Score=30.78 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=25.5
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
+.-.|.+|...|+-..+.-.--.||..||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45689999999864333333447999999999754
No 92
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=75.22 E-value=1.1 Score=26.87 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.7
Q ss_pred hhHHHhHHHHHHh
Q psy11857 55 TVCLHCLSRIAAS 67 (129)
Q Consensus 55 ~fC~~Cl~~~~~~ 67 (129)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999977
No 93
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=75.11 E-value=1.4 Score=26.99 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=36.1
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
...+-+.|..|...+. ..+....=|..||..|..+.+. ..|..|++.+.
T Consensus 26 ~H~~CF~C~~C~~~L~---~~~f~~~~g~~yC~~cy~~~~~--------~~C~~C~~~I~ 74 (126)
T 2xqn_T 26 WHLKHFCCFDCDSILA---GEIYVMVNDKPVCKPCYVKNHA--------VVCQGCHNAID 74 (126)
T ss_dssp ECGGGSBCTTTCCBCT---TSEEEEETTEEEEHHHHHHHSC--------CBCTTTCSBCC
T ss_pred ccCCCCCcCCCCCCCC---cCEEEeECCEEechHHhCcCcC--------ccCcccCCcCC
Confidence 3445789999999885 3355566788999999876533 37999988765
No 94
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=74.82 E-value=0.32 Score=23.44 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=10.3
Q ss_pred Cccccccccccc
Q psy11857 29 SFLTCGTCLCMY 40 (129)
Q Consensus 29 ~~l~C~iC~~~~ 40 (129)
+-+.||+|+..+
T Consensus 4 EGFiCP~C~~~l 15 (34)
T 3mjh_B 4 EGFICPQCMKSL 15 (34)
T ss_dssp EEEECTTTCCEE
T ss_pred cccCCcHHHHHc
Confidence 358999999988
No 95
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=74.56 E-value=1.2 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=11.6
Q ss_pred hhHHHhHHHHHHh
Q psy11857 55 TVCLHCLSRIAAS 67 (129)
Q Consensus 55 ~fC~~Cl~~~~~~ 67 (129)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 96
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=74.47 E-value=1.3 Score=24.48 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=32.2
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
...|.+|.+-= + +++ .|...|...|+...+..-+ ...+.||.|....
T Consensus 12 ~~~C~vC~~~~-----~-ll~Cd~C~~~~H~~Cl~P~l~~~P--~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT-----D-VLRCTHCAAAFHWRCHFPAGTSRP--GTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT-----T-CEECSSSCCEECHHHHCTTTCCCC--SSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC-----e-EEECCCCCCceecccCCCccCcCC--CCCEECccccCCC
Confidence 56799998532 2 233 4999999999976554422 3578999997643
No 97
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.03 E-value=2.3 Score=24.81 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=31.7
Q ss_pred CccccccccccccCCCCceEeec---CCchhHHHhHHHHHHhccC----------CCCccccccCCc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLP---CSHTVCLHCLSRIAASQTR----------ETGTLRCPICRE 82 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~---CgH~fC~~Cl~~~~~~~~~----------~~~~~~CP~Cr~ 82 (129)
.+-.|.||...- .-..+| |+-.|...|+.+.-.-+.. ....+.||.|..
T Consensus 14 ~D~~C~VC~~~t-----~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWT-----AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCC-----SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccc-----ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 467899998544 223443 8889999999885222111 134689999943
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.72 E-value=0.48 Score=26.72 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=33.3
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|++|....+ ....+. .|..-|...|+....... ....+.||.|...+.
T Consensus 17 ~~~~C~~C~~~~~---~~~mi~CD~C~~wfH~~Cv~~~~~~~--~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD---GSPMIGCDDCDDWYHWPCVGIMAAPP--EEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS---SCCEEECSSSSSEEEHHHHTCSSCCC--SSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC---CCCEEEcCCCCcccccccCCCCccCC--CCCCEEChhccCchh
Confidence 3567999998873 222333 487788888886433221 124789999976654
No 99
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.69 E-value=0.18 Score=30.27 Aligned_cols=41 Identities=27% Similarity=0.562 Sum_probs=27.1
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+..||+|...+. + .=++.+|..|-..+. ....||.|.+.+.
T Consensus 32 ~~~CP~Cq~eL~-----~---~g~~~hC~~C~~~f~-------~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLD-----Q---DNGHARCRSCGEFIE-------MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEE-----E---ETTEEEETTTCCEEE-------EEEECTTTCSBCE
T ss_pred cccCccCCCcce-----e---cCCEEECccccchhh-------ccccCcchhhHHH
Confidence 389999998883 1 124445887854321 2468999988765
No 100
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.34 E-value=0.82 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhcc-CCCCccccccCCcc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT-RETGTLRCPICREQ 83 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~-~~~~~~~CP~Cr~~ 83 (129)
...|.+|...|+-..+.-.--.||+.||..|......-.. .......|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4679999998853223333347999999999876443211 11234567777543
No 101
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=68.25 E-value=1.2 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=21.5
Q ss_pred cccccccccc-CCCCceEeec-CCchhHHHhHHHH
Q psy11857 32 TCGTCLCMYD-GGEHTPKLLP-CSHTVCLHCLSRI 64 (129)
Q Consensus 32 ~C~iC~~~~~-~~~~~p~~l~-CgH~fC~~Cl~~~ 64 (129)
-||-|...+. ..+..++.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3998887553 2223334555 9999998887655
No 102
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.27 E-value=4.2 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=20.9
Q ss_pred ccccccccccccCCCCceEeecCCchhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLH 59 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~ 59 (129)
...|..|...... ..+..-.||.+||..
T Consensus 25 ~~rC~~C~kkvgl--~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGL--ATSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSS--SSCEECTTCCEECTT
T ss_pred CccchhhCCeecc--cCCeEcCCCCEeccc
Confidence 5789999987631 136666899999985
No 103
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.16 E-value=1.9 Score=28.80 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=30.1
Q ss_pred cccccccccccCCCCceEeec---CCchhHHHhHHHHH------HhccCCCCccccccCCcce
Q psy11857 31 LTCGTCLCMYDGGEHTPKLLP---CSHTVCLHCLSRIA------ASQTRETGTLRCPICREQI 84 (129)
Q Consensus 31 l~C~iC~~~~~~~~~~p~~l~---CgH~fC~~Cl~~~~------~~~~~~~~~~~CP~Cr~~~ 84 (129)
..||||...|+.++....++. |..=|...|+.-.. ...+ ....+.||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~p-e~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLP-ESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSH-HHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCC-CCCeeECcCCCCCC
Confidence 469999999964332222443 66666667763211 1000 01258999998753
No 104
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.77 E-value=4.8 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred CccccccccccccCCCCceEeecCCchhHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLH 59 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~ 59 (129)
....|..|...+. ..+..-.||.+||..
T Consensus 24 ~~~RC~~C~kkvg---L~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVG---VTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCT---TTCEECTTSCEECTT
T ss_pred cCccchhhcCccc---ccceEeccCCEeccc
Confidence 3578999998763 235555799999984
No 105
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.46 E-value=4.5 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCceEeecCCchhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLH 59 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~ 59 (129)
...|..|...+. ..+..-.||.+||..
T Consensus 25 ~nRC~~CrKkvg---L~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVG---LTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCG---GGCEECTTSCEECSS
T ss_pred CCcChhhCCccc---ccCeecCCCCEechh
Confidence 568999998753 345566799999974
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.44 E-value=1.7 Score=25.83 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=30.0
Q ss_pred cCccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.+.+.| ||....+ ....+. .|..-|...|+..-.... ...+.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~---~~~mi~Cd~C~~w~H~~C~~~~~~~~---p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHD---DGYMICCDKCSVWQHIDCMGIDRQHI---PDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSC---SSCEEEBTTTCBEEETTTTTCCTTSC---CSSBCCTTTSS
T ss_pred CCCEEe-ECCCccC---CCcEEEcCCCCCcCcCcCCCCCccCC---CCCEECCCCcC
Confidence 345778 8988764 223333 477778888875432221 24689999964
No 107
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=61.23 E-value=11 Score=19.34 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=25.4
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHh-ccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-QTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. .. .-+...... ...+...+.|+.|.+.+.
T Consensus 10 ~~~C~~C~k~f~----~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 10 TYRCKVCSRVYT----HI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp EEECTTTCCEES----SH-----------HHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred ceECCCCcchhC----CH-----------HHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 578999998883 32 233344333 211245789999988765
No 108
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.14 E-value=3.3 Score=26.80 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=32.6
Q ss_pred CccccccccccccC-CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~-~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
.+-.|.+|...|.- .....+-..|.|.+|..|-. +.. ....+.|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP----EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS----SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC----CCCcEeeHHHHHH
Confidence 36789999998742 12222333699999999962 111 1357888888754
No 109
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.72 E-value=2.3 Score=26.88 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=32.3
Q ss_pred Ccccccccccccc-CCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~-~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
..-.|.+|...|. .....-.-..|.|.+|..|-...... .....+.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~--~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN--RPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS--SSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCC--CCccceechhhHHH
Confidence 4678999999883 11222233469999999985432110 11346788888653
No 110
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=59.42 E-value=1.7 Score=25.45 Aligned_cols=49 Identities=18% Similarity=0.512 Sum_probs=34.3
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
...+-+.|..|...+. .......=|..||..|..+.+ ...|..|.+.+.
T Consensus 29 ~H~~CF~C~~C~~~L~---~~~~~~~~g~~yC~~cy~~~~--------~~~C~~C~~~I~ 77 (101)
T 2cup_A 29 WHDTCFRCAKCLHPLA---NETFVAKDNKILCNKCTTRED--------SPKCKGCFKAIV 77 (101)
T ss_dssp EETTTCCCSSSCCCTT---SSCCEEETTEEECHHHHTTCC--------CCBCSSSCCBCC
T ss_pred hhhcCCcccccCCCCC---cCeeECcCCEEEChhHhhhhc--------CCccccCCCccc
Confidence 3445689999999884 233445568889999975432 348999988765
No 111
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=58.45 E-value=11 Score=19.88 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|.+|...| .. ..-+........+ ...+.|+.|.+.+.
T Consensus 4 py~C~~C~k~F----~~-----------~~~L~~H~~~Ht~-ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTY----RD-----------ASGLSRHRRAHLG-YRPRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEE----SS-----------HHHHHHHHHHHHT-CCCEECTTTCCEES
T ss_pred CccCCCCCCEe----CC-----------HHHHHHHHHHhCC-CcCeECCCCCCCcC
Confidence 57888888888 33 2334444433321 35789999998775
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.41 E-value=5.8 Score=25.36 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=29.4
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHh----c-cCCCCccccccCCc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAAS----Q-TRETGTLRCPICRE 82 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~----~-~~~~~~~~CP~Cr~ 82 (129)
+..|.+|.+-= + .+. .|-..||..||...+.. . ......+.||.|+.
T Consensus 63 ~d~C~vC~~GG-----~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGG-----N-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCS-----S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCC-----c-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45677776532 1 122 58889999999875531 0 01146889999964
No 113
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.08 E-value=16 Score=19.40 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHH-hccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA-SQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. .. .-+..... ........+.|+.|.+.+.
T Consensus 15 ~~~C~~C~k~f~----~~-----------~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 15 PYECYICHARFT----QS-----------GTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp SEECTTTCCEES----CH-----------HHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CeECCCcCchhC----CH-----------HHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 578999999883 32 23344433 2221124689999988765
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.24 E-value=1.6 Score=25.76 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=28.6
Q ss_pred CccccccccccccCCCCceEeec-----CC-chhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLP-----CS-HTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~-----Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
+...| +|.+..+ . .++- |. .-|...|+.- ... ....+.||.|+...
T Consensus 35 e~~yC-iC~~~~~----g-~MI~CD~~dC~~~WfH~~CVgl--~~~--p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY----G-EMIGCDNPDCSIEWFHFACVGL--TTK--PRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC----S-CCCCCSCSSCSCCCCCSTTTTC--SSC--CCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC----C-CEeEecCCCCCCCCEecccCCc--CcC--CCCCEECcCccCcC
Confidence 45677 9999773 2 2443 43 3588888862 211 13578999997643
No 115
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=55.61 E-value=15 Score=18.02 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=23.4
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...| ... .-+........+ ...+.|+.|.+.+.
T Consensus 4 ~~~C~~C~~~f----~~~-----------~~l~~H~~~h~~-~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFF----RSN-----------YYLNIHLRTHTG-EKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBC----SCH-----------HHHHHHHHHHHC-CCCEECSSSSCEES
T ss_pred CccCCCCcchh----CCh-----------HHHHHHHHHcCC-CCCcCCCCCcchhC
Confidence 57899999988 332 222233222211 34689999988765
No 116
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.55 E-value=0.65 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=22.3
Q ss_pred ccccccccccccC-CCCceEeec---CCchhHHHhHHHHHHh
Q psy11857 30 FLTCGTCLCMYDG-GEHTPKLLP---CSHTVCLHCLSRIAAS 67 (129)
Q Consensus 30 ~l~C~iC~~~~~~-~~~~p~~l~---CgH~fC~~Cl~~~~~~ 67 (129)
.-.||-|...+.. +.-.-++-. |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4579999887741 111222223 7777887777665443
No 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.45 E-value=10 Score=24.32 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=26.4
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
....+-+.|..|...+.+ ... ..=|..||..|..+.+.
T Consensus 28 ~wH~~CF~C~~C~~~L~~---~~f-~~~g~~yC~~~y~~~f~ 65 (169)
T 2rgt_A 28 HWHSKCLKCSDCHVPLAE---RCF-SRGESVYCKDDFFKRFG 65 (169)
T ss_dssp EECTTTSBCTTTCCBCCS---CCE-ESSSCEECHHHHHHHHS
T ss_pred EEccccCccCCCCCcCCC---CCc-ccCCeeeeccccccccc
Confidence 334567899999998852 222 34577899999877654
No 118
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.11 E-value=19 Score=18.88 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=25.2
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+.|++|...| ... .-+...+.... ....+.|+.|.+.+.
T Consensus 13 k~~~C~~C~k~f----~~~-----------~~L~~H~~~h~-~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAF----SRS-----------SILVQHQRVHT-GEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEE----SSH-----------HHHHHHHHGGG-CSCCEECSSSCCEES
T ss_pred CCccCCCCCCcc----CCH-----------HHHHHHHHhcC-CCCCeECCCCCcccC
Confidence 368899999988 332 22333333322 134689999988765
No 119
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.18 E-value=1.3 Score=23.95 Aligned_cols=51 Identities=22% Similarity=0.441 Sum_probs=30.4
Q ss_pred CccccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
+...|++|...++. .-.++ .|..=|...|+.-...... ....+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl~~~~~~-~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAA---DEFWICCDLCEMWFHGKCVKITPARAE-HIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCS---SSCEEECSSSCCEEETTTTTCCTTGGG-GCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCC---CCCEEEccCCCCCCCccccCcChhHhc-CCCcEECCCCcCc
Confidence 46789999998842 12233 3666677777643222110 1246889999754
No 120
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.27 E-value=20 Score=17.63 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHH-hccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA-SQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. . ..-|...+. .+. ....+.|+.|.+.+.
T Consensus 12 ~~~C~~C~k~f~----~-----------~~~L~~H~~~~H~-~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 12 PYICQSCGKGFS----R-----------PDHLNGHIKQVHT-SERPHKCQVWVSGPS 52 (54)
T ss_dssp CEECSSSCCEES----S-----------HHHHHHHHHHTSC-CCCCCCSSSSCCSSC
T ss_pred CeECCCCCcccC----C-----------HHHHHHHHHHhcC-CCCCccCCCCCCCCC
Confidence 578999998883 3 233444443 221 134689999988654
No 121
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.95 E-value=0.49 Score=27.43 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 3455555544
No 122
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=51.75 E-value=0.66 Score=26.61 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=22.1
Q ss_pred cccccc--cccccc-CCCCceEee------cCCchhHHHhHHHH
Q psy11857 30 FLTCGT--CLCMYD-GGEHTPKLL------PCSHTVCLHCLSRI 64 (129)
Q Consensus 30 ~l~C~i--C~~~~~-~~~~~p~~l------~CgH~fC~~Cl~~~ 64 (129)
..-||- |...+. +.+...+.= .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 455886 877653 122233343 58999999997654
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.33 E-value=11 Score=21.11 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=29.1
Q ss_pred ccccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
.+.| +|...++. .-.++ .|..=|...|+.-...... ....+.||.|+...
T Consensus 12 ~~~C-~C~~~~d~---~~~MIqCd~C~~WfH~~Cvgl~~~~~~-~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNV---NHFMIECGLCQDWFHGSCVGIEEENAV-DIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCS---SSCEEEBTTTCCEEEHHHHTCCHHHHT-TCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCC---CCceEEcCCCCCcEEeeecCccccccc-CCCeEECCCccccc
Confidence 5566 89888741 22233 3665677777743322211 12578999998653
No 124
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=51.20 E-value=4 Score=21.91 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=30.7
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
....|.+|.+.- . +++ .|...|...|+..-+...+ .....||.|.+
T Consensus 10 ~~~~C~vC~~~g-----~-ll~CD~C~~~fH~~Cl~p~l~~~p--~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGG-----E-IILCDTCPRAYHMVCLDPDMEKAP--EGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCS-----S-EEECSSSSCEEEHHHHCTTCCSCC--CSSCCCTTGGG
T ss_pred CCCCCccCCCCC-----c-EEECCCCChhhhhhccCCCCCCCC--CCceECccccc
Confidence 357899998732 2 222 4888899999976433221 35789999965
No 125
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.72 E-value=20 Score=19.15 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=28.9
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~ 67 (129)
.+..+-+.|..|...+. .......=|..||..|..+.+..
T Consensus 28 ~~H~~CF~C~~C~~~L~---~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 28 VFHVGCFVCSTCRAQLR---GQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp EECTTTCBCSSSCCBCT---TSCEEESSSCEEEHHHHHHHHHT
T ss_pred eEcccCCcccccCCcCC---cCcCEeeCCeEECHHHHHHHHcc
Confidence 33445689999999884 33455556888999999877654
No 126
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.89 E-value=28 Score=18.23 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=25.6
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+.|++|...| ... .-+........+ ...+.|+.|.+.+.
T Consensus 16 ~~~~C~~C~k~f----~~~-----------~~l~~H~~~H~~-~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 16 KPYKCDRCQASF----RYK-----------GNLASHKTVHTG-EKPYRCNICGAQFN 56 (74)
T ss_dssp CSBCCTTSSCCB----SCH-----------HHHHHHHHHHCC-CCSEECTTTCCEES
T ss_pred CCeECCCCCcee----CCH-----------HHHHHHHHHcCC-CCCEECCCCCchhC
Confidence 368899999999 332 223333333221 34689999998765
No 127
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.76 E-value=21 Score=20.17 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=26.9
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+...|++|...|. . ..=+........+ ...+.|+.|.+.+.
T Consensus 27 ~~h~C~~Cgk~F~----~-----------~~~L~~H~~~H~~-~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFA----S-----------KGAQERHLRLLHA-AQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEES----S-----------HHHHHHHHHTTSC-SSSEECTTSSCEES
T ss_pred CCEECCCCCCCcC----c-----------HHHHhhhhhhccC-CCccCCCCCCCEeC
Confidence 3578999999993 3 2334444443321 35689999998765
No 128
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.89 E-value=26 Score=18.12 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. .. .-+........+ ...+.|+.|.+.+.
T Consensus 9 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H~~-~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 9 PEKCSECSYSCS----SK-----------AALRIHERIHCT-DRPFKCNYCSFDTK 48 (70)
T ss_dssp SEECSSSSCEES----SH-----------HHHHHHHGGGCC-SCSEECSSSSCEES
T ss_pred CeECCCCCcccC----CH-----------HHHHHHHHHcCC-CCCEeCCCCCCccC
Confidence 578999998883 32 223344333221 34589999988765
No 129
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=47.62 E-value=4 Score=19.36 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=13.6
Q ss_pred eecCCchhHHHhHHHHHH
Q psy11857 49 LLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 49 ~l~CgH~fC~~Cl~~~~~ 66 (129)
+.+|.|++|..|-...+.
T Consensus 9 mascehtmcgycqgplym 26 (40)
T 1erd_A 9 MASCEHTMCGYCQGPLYM 26 (40)
T ss_dssp HHHTCGGGGGGSCHHHHH
T ss_pred HHhccccccccccCCeeE
Confidence 447999999999766543
No 130
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=47.45 E-value=13 Score=22.64 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=35.9
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
....+-+.|..|...+++. ..+....=|..||..|..+.+.. ...|..|.+.+.
T Consensus 24 ~wH~~CF~C~~C~~~L~~~-~~~~~~~~g~~yC~~~y~~~~~~------~~~C~~C~~~I~ 77 (131)
T 2xjy_A 24 YWHEDCLSCDLCGCRLGEV-GRRLYYKLGRKLCRRDYLRLFGQ------DGLCASCDKRIR 77 (131)
T ss_dssp EEETTTCBCTTTCCBCSST-TCCEEEETTEEECHHHHHHHHCC------CEECTTTCCEEC
T ss_pred cccHHHcccCcCCCccccC-CCeEEEECCEEeecCchhhhCCC------ccChhhcCCccC
Confidence 3345678999999988310 12345556788999998776543 226888877664
No 131
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=47.23 E-value=25 Score=17.41 Aligned_cols=40 Identities=23% Similarity=0.480 Sum_probs=23.7
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. .. .-+........ +...+.|+.|.+.+.
T Consensus 2 ~~~C~~C~~~f~----~~-----------~~l~~H~~~h~-~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFA----RQ-----------EHLKRHYRSHT-NEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBS----CH-----------HHHHHHHHTTT-SSCSEECTTTCCEES
T ss_pred cCcCCCCccccC----CH-----------HHHHHHHHHhC-CCCCccCCCCCCccC
Confidence 367889988883 32 22333333321 134689999988765
No 132
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.92 E-value=12 Score=19.93 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=28.0
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~ 67 (129)
.+..+-+.|..|...+.. ......=|..||..|..+.+..
T Consensus 26 ~~H~~CF~C~~C~~~L~~---~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 26 SWHPECFRCDLCQEVLAD---IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp EECTTTSBCSSSCCBCSS---SCCEEETTEEECHHHHHHHHCC
T ss_pred cccccCCEeCCCCCcCCC---CccEeECCeEECHHHhhhhcCC
Confidence 334456899999998852 2344457888999998776554
No 133
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=46.88 E-value=12 Score=23.43 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=28.8
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHH-----HhccCCCCccccccCCc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIA-----ASQTRETGTLRCPICRE 82 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~-----~~~~~~~~~~~CP~Cr~ 82 (129)
+..|.+|.+-= + .+. .|-..||..||.+.+ .........+.|+.|+.
T Consensus 57 ~~~C~vC~dGG-----~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGG-----N-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCS-----E-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCC-----e-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34577776532 1 112 488899999999752 22111146799999953
No 134
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=46.50 E-value=24 Score=19.74 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=23.1
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
..+.|.+|...-. ....-.-+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~-~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSC-CBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCC-CCCeeEccCccchhhhhhhHh
Confidence 3688999985320 002334567999999999985
No 135
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=45.89 E-value=10 Score=23.86 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=12.2
Q ss_pred ccccCcccccccccccc
Q psy11857 25 DFNESFLTCGTCLCMYD 41 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~ 41 (129)
.++.....||.|...|.
T Consensus 22 ~~M~~lP~CP~C~seyt 38 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYT 38 (138)
T ss_dssp -CCCCSCCCTTTCCCCC
T ss_pred cccccCCCCCCCCCcce
Confidence 33444678999999885
No 136
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=45.65 E-value=7 Score=25.53 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=31.1
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+-+.|..|...+.. ... ..=|..||..|..+.+.. .|..|++.+.
T Consensus 84 H~~CF~C~~C~~~L~~---~~f-~~~g~~yC~~~y~~~f~~--------kC~~C~~~I~ 130 (182)
T 2jtn_A 84 HSKCLKCSDCHVPLAE---RCF-SRGESVYCKDDFFKRFGT--------KCAACQLGIP 130 (182)
T ss_dssp CSSTTSCTTTCCCCSS---CCE-EETTEEECHHHHHHTTSC--------CCTTTCCCCC
T ss_pred ccccCccCCCCCccCC---Cce-eECCEeeecCcccccccc--------ccccCCCccC
Confidence 3456889999988852 223 335778899988765432 6777776654
No 137
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=45.43 E-value=27 Score=17.03 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=23.2
Q ss_pred cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
+.|++|...| ... .-+........ +...+.|+.|.+.+.
T Consensus 2 ~~C~~C~~~f----~~~-----------~~l~~H~~~h~-~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRX----KKP-----------SMLKKHIRTHT-DVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBC----SSH-----------HHHHHHHHHTS-SCCCEECSSSSCEES
T ss_pred CcCCCCcCcC----CCH-----------HHHHHHHHhcC-CCCCccCCCCCchhc
Confidence 4688888888 332 22333333322 134689999988765
No 138
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=45.12 E-value=36 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=9.6
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 63 ~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 63 RPFKCQICPYASR 75 (96)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCCccC
Confidence 4578999987654
No 139
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.85 E-value=9.4 Score=17.30 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=9.5
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.||.|+....
T Consensus 2 ~k~~CpvCk~q~P 14 (28)
T 2jvx_A 2 SDFCCPKCQYQAP 14 (28)
T ss_dssp CCEECTTSSCEES
T ss_pred CcccCccccccCc
Confidence 3578999987543
No 140
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.75 E-value=23 Score=16.78 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=21.6
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.+.|.+|...|. .. .-+......+. ....+.|+.|.+
T Consensus 12 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H~-~~k~~~C~~C~k 48 (48)
T 2epr_A 12 QVACEICGKIFR----DV-----------YHLNRHKLSHS-GEKPYSSGPSSG 48 (48)
T ss_dssp SEEETTTTEEES----SH-----------HHHHHHGGGSC-SCCCCCSCCCCC
T ss_pred CeeCCCCCcccC----CH-----------HHHHHHHHhcC-CCCCccCCCCCC
Confidence 578999998883 32 22333333322 124678999864
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.38 E-value=9.1 Score=20.59 Aligned_cols=40 Identities=20% Similarity=0.501 Sum_probs=26.0
Q ss_pred cccccccccccCCCCce--Eee-cCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857 31 LTCGTCLCMYDGGEHTP--KLL-PCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (129)
Q Consensus 31 l~C~iC~~~~~~~~~~p--~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C 80 (129)
..|--|+..|. +. ..- .|++.||..|=.=. . .....||-|
T Consensus 16 ~~C~~C~~~~~----~~~~y~C~~C~~~FC~dCD~fi-H-----e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELK----DQHVYVCAVCQNVFCVDCDVFV-H-----DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECT----TSEEECCTTTTCCBCHHHHHTT-T-----TTSCSSSTT
T ss_pred CcccccCcccC----CCccEECCccCcCcccchhHHH-H-----hhccCCcCC
Confidence 45999999883 22 223 49999999994311 1 134578877
No 142
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.33 E-value=8.5 Score=23.37 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=34.7
Q ss_pred cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+-+.|..|...+.+. .......=|..||..|..+.+.. .-.|..|.+.+.
T Consensus 30 ~~CF~C~~C~~~L~~~-~~~~~~~~g~~yC~~cy~~~f~~------~~~C~~C~~~I~ 80 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDI-GTSSYTKSGMILCRNDYIRLFGN------SGAGGSGGHMGS 80 (122)
T ss_dssp HHHHCCSSSCCCTTTS-EECCEEETTEEECHHHHHHHHCC------CCSSSCSSCCSC
T ss_pred hhCCCcCCCCCccccc-CCeEEEECCeeecHHHHHHHcCC------CCccccCCCCcC
Confidence 3468999999988310 02234456788999998876543 226999988776
No 143
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.80 E-value=18 Score=19.20 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=24.0
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccC--CCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR--ETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~~~ 85 (129)
.+.|.+|...| .... -+........+ ....+.|+.|.+.+.
T Consensus 7 ~~~C~~C~k~f----~~~~-----------~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 7 GLQCEICGFTC----RQKA-----------SLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CEECSSSCCEE----SSHH-----------HHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred CeECCCCCCee----CCHH-----------HHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 57899999988 3322 22222222110 124689999998765
No 144
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.48 E-value=1 Score=24.53 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=32.8
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhc-cCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQ-TRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~-~~~~~~~~CP~Cr~~ 83 (129)
+...|.+|.....+. ...+++ .|...|...|+...+... ......+.|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~-~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEA-PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBT-TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCC-CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 367899999865311 133333 488889999987532210 001357899999654
No 145
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=43.44 E-value=5.9 Score=17.55 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=9.3
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
...||+|++.+
T Consensus 6 ~vqcpvcqq~m 16 (29)
T 3vhs_A 6 QVQCPVCQQMM 16 (29)
T ss_dssp EEECTTTCCEE
T ss_pred eeeChHHHHhC
Confidence 46899999877
No 146
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.17 E-value=23 Score=18.75 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=27.6
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~ 67 (129)
.+..+-+.|..|...+. .......=|..||..|..+.+..
T Consensus 26 ~~H~~CF~C~~C~~~L~---~~~~~~~~~~~yC~~cy~~~f~~ 65 (69)
T 2cur_A 26 PWHADCFVCVTCSKKLA---GQRFTAVEDQYYCVDCYKNFVSG 65 (69)
T ss_dssp EECTTTTBCTTTCCBCT---TSCEEECSSCEEEHHHHHHHHTC
T ss_pred ccccCcCEECCCCCCCC---CCccEeECCEEECHHHhHHHhcC
Confidence 33445689999999884 23344456788999998766543
No 147
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=43.03 E-value=10 Score=24.82 Aligned_cols=54 Identities=17% Similarity=0.372 Sum_probs=34.5
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+..+-+.|..|...+... .......=|..||..|..+.+.. ...|..|.+.+.
T Consensus 27 ~wH~~CF~C~~C~~~L~~~-g~~~~~~~g~~yC~~cy~~~~~~------~~~C~~C~~~I~ 80 (188)
T 1rut_X 27 YWHSRCLKCSSCQAQLGDI-GTSSYTKSGMILCRNDYIRLFGN------SGACSACGQSIP 80 (188)
T ss_dssp EECGGGCBCTTTCCBHHHH-CSEEEEETTEEECHHHHHHHHSC------CEECTTTCCEEC
T ss_pred EecccCcccCCCCcccccC-CceEEEeCCcccccccccccccc------CCccccCCCccc
Confidence 3344678999999888310 02444556888999998776543 125777776654
No 148
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=42.24 E-value=11 Score=21.50 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=31.2
Q ss_pred ccccCCcceeeCCCCCCCCChhHHHHHHHHHHHhhc-cCCCCCCCccccc
Q psy11857 76 RCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQR-RHIIPKCSTHNSQ 124 (129)
Q Consensus 76 ~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~~~~-~~~~~~C~~H~~~ 124 (129)
.|-+|++.+. .-.+-.+|.+...+++.+..-... .....+|+.|=++
T Consensus 3 ~c~~c~~~v~--gvslfr~PK~~~~Rk~W~~~l~c~lt~nSrIC~~HF~~ 50 (77)
T 3kde_C 3 YCKFCCKAVT--GVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFND 50 (77)
T ss_dssp EETTTTEECC--SSCEEECCSSHHHHHHHHHHHTSCCCTTCEEEGGGSCG
T ss_pred HHHHHHhhcC--CceEEECCCCHHHHHHHHHHcCCCCCCcccHHHHhCCH
Confidence 5888887763 223346788888888877655433 3456789999753
No 149
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.88 E-value=3.5 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=31.3
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
....|.+|.+.= + .++ .|.-.|...|+..-+..-+ ...+.||.|...
T Consensus 24 n~~~C~vC~~~g-----~-LL~CD~C~~~fH~~Cl~PpL~~~P--~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG-----D-LVMCNQCEFCFHLDCHLPALQDVP--GEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS-----C-CEECTTSSCEECTTSSSTTCCCCC--SSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC-----C-EEECCCCCCceecccCCCCCCCCc--CCCcCCccccCC
Confidence 467899999632 1 222 4777888999865443322 357899999754
No 150
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.72 E-value=35 Score=17.97 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=25.2
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
..+.|++|...|. .. .-+........ ....+.|+.|.+.+.
T Consensus 17 ~~~~C~~C~~~f~----~~-----------~~l~~H~~~h~-~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFS----HS-----------SDLSKHRRTHT-GEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCS----CH-----------HHHHHHHTTTC-CSCSEECSSSCCEES
T ss_pred CCEECCCCCcccC----CH-----------HHHHHHHHHcC-CCcCeeCCCCCCccC
Confidence 3689999999983 32 22333333221 124689999988765
No 151
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=41.37 E-value=37 Score=19.05 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=8.9
Q ss_pred cccccccccccc
Q psy11857 30 FLTCGTCLCMYD 41 (129)
Q Consensus 30 ~l~C~iC~~~~~ 41 (129)
.+.|++|...|.
T Consensus 17 ~~~C~~C~~~f~ 28 (106)
T 2ee8_A 17 EFICKFCGRHFT 28 (106)
T ss_dssp CCBCSSSCCBCS
T ss_pred CeECCCCCCccC
Confidence 577888887773
No 152
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=41.18 E-value=11 Score=19.32 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccccccccccCCCCceEeec----CCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857 32 TCGTCLCMYDGGEHTPKLLP----CSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l~----CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr 81 (129)
.|.+|...++. .-.++. |..=|...|+.-...... ...+.||.|+
T Consensus 4 ~cc~C~~p~~~---~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~--~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD---KVDWVQCDGGCDEWFHQVCVGVSPEMAE--NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT---TCCEEECTTTTCCEEETTTTTCCHHHHH--HSCCCCSCC-
T ss_pred cCCCCcCccCC---CCcEEEeCCCCCccCcccccCCCccccC--CCCEECCCCC
Confidence 46788887742 222333 433455566532221100 1467888884
No 153
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.45 E-value=15 Score=20.76 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=19.3
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIA 65 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~ 65 (129)
+-+.|..|...+.. ......=|..||..|..+.+
T Consensus 50 ~CF~C~~C~~~L~~---~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 50 EEFNCAHCKNTMAY---IGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTCBCSSSCCBCSS---SCBEESSSCEECHHHHHHHT
T ss_pred cCCccCCCCCCCCC---CEeEeECCEEECHHHHHHHc
Confidence 45667777766631 22333456667777765543
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.98 E-value=14 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=18.5
Q ss_pred ceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 46 TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 46 ~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.-..||+.|. .. .+....||.|+....
T Consensus 67 p~~C~~CG~~F~---------~~--~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK---------AE--INIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC---------CC--SSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec---------cc--CCCCCCCcCCCCCcc
Confidence 555667999881 11 124568999987644
No 155
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=39.93 E-value=3.9 Score=23.80 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=32.9
Q ss_pred cCccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
++...|.||...-.. +...+++ .|.-.|...|+..... ..+.+.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~-~~~~ll~CD~C~~~fH~~Cl~p~~v----P~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQ-NSNVILFCDMCNLAVHQECYGVPYI----PEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSC-SEEEEEECSSSCCCCCHHHHTCSSC----CSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCC-CCCCEEECCCCCchhhcccCCCCcc----CCCceECccccCcc
Confidence 457889999975310 0123333 4887888999864321 14688999997643
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.93 E-value=9.2 Score=20.90 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=32.4
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHH-HhHHHHHHhccCCCCccccccCCcc
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCL-HCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~-~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
....+-+.|..|...+.. .+....=|..||. .|..+.+.. .|..|...
T Consensus 22 ~~H~~CF~C~~C~~~L~~---~~~~~~~g~~yC~~~cy~~~f~~--------~C~~C~~~ 70 (76)
T 1iml_A 22 DWHRPCLKCEKCGKTLTS---GGHAEHEGKPYCNHPCYSAMFGP--------KGFGRGGA 70 (76)
T ss_dssp EEETTTCBCTTTCCBCCT---TTEEEETTEEEETTTHHHHHSSC--------CCSSCCCS
T ss_pred cccCCCCCccccCccCCC---CceECcCCeEeeCHHHHHHHhCc--------cCCCcCCc
Confidence 334457899999998852 2445556788999 598765433 67777644
No 157
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.26 E-value=6 Score=22.03 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=32.2
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
+...|.||.+.-.. +...+++ .|.-.|...|+..... ..+.+.||.|...
T Consensus 15 ~~~~C~vC~~~~s~-~~~~ll~CD~C~~~~H~~Cl~~~~v----P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQ-NSNVILFCDMCNLAVHQECYGVPYI----PEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCC-SSSCEEECSSSCCEEEHHHHTCSSC----CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCC-CCCCEEECCCCCCccccccCCCCcC----CCCCcCCccCcCc
Confidence 46789999875311 1233444 5888899999864321 1357899998654
No 158
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=38.40 E-value=15 Score=18.27 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.4
Q ss_pred CCCCCCccccccccC
Q psy11857 114 IIPKCSTHNSQIKKL 128 (129)
Q Consensus 114 ~~~~C~~H~~~~~~~ 128 (129)
....|..|+++.++|
T Consensus 5 ~~~~C~~H~~e~l~l 19 (48)
T 3ddt_A 5 SHPMCKEHEDEKINI 19 (48)
T ss_dssp TSCBCSSSTTSBCCE
T ss_pred cCCcCCCCCCccccE
Confidence 456799999556653
No 159
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.30 E-value=46 Score=17.67 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCC---CCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRE---TGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~---~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. . ..-+.......... ...+.|+.|.+.+.
T Consensus 15 ~~~C~~C~~~f~----~-----------~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~ 58 (86)
T 1x6h_A 15 PYACSHCDKTFR----Q-----------KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58 (86)
T ss_dssp CEECSSSSCEES----S-----------HHHHHHHHHHTTCSSCCCCCEECSSSCCEES
T ss_pred CCcCCCCCCccC----C-----------HHHHHHHHHHhcCCcCCCcceECCCCCChhC
Confidence 578999998883 3 22344443322111 14589999988765
No 160
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.12 E-value=1.1 Score=26.38 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=30.1
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
+...|.||...-+ ...+++ .|...|...|+..-+..-+ ...+.||.|...
T Consensus 15 ~~~~C~vC~~~~~---~~~ll~CD~C~~~~H~~Cl~Ppl~~~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE---DDKLLFCDGCDDNYHIFCLLPPLPEIP--RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG---GGGCEECTTTCCEECSSSSSSCCSSCC--SSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC---CCCEEEcCCCCchhccccCCCCcccCC--CCCcCCccCcCc
Confidence 3567999987652 122333 4777788888764332211 356789988653
No 161
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.33 E-value=3.8 Score=22.74 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=27.7
Q ss_pred ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.|.+|...-+ ...+++ .|...|...|+..-+...+ .+....||.|..
T Consensus 20 ~C~~C~~~~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC---GGGEEECTTTCCEEEGGGSSSCCSSCC-SSSCCCCTTTSC
T ss_pred CCcCCCCcCC---CCCEEEcCCCCCceecccCCCCcCCCC-CCCCcCCcCccC
Confidence 4567775431 122333 4888899999875443322 122789999975
No 162
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=37.18 E-value=69 Score=19.34 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=10.2
Q ss_pred Ccccccccccccc
Q psy11857 29 SFLTCGTCLCMYD 41 (129)
Q Consensus 29 ~~l~C~iC~~~~~ 41 (129)
..+.|++|...|.
T Consensus 24 ~~~~C~~C~~~f~ 36 (155)
T 2rpc_A 24 LSRPKKSCDRTFS 36 (155)
T ss_dssp CSSSCCCCCCCBS
T ss_pred cccccccCCcccC
Confidence 3678999998884
No 163
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.39 E-value=24 Score=18.71 Aligned_cols=39 Identities=15% Similarity=0.381 Sum_probs=26.2
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
....+-+.|..|...+. ..+....=|..||..|..+.+.
T Consensus 26 ~~H~~CF~C~~C~~~L~---~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 26 PWHKECFVCTACRKQLS---GQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp EEETTTSBCSSSCCBCT---TSCCEESSSSEECHHHHHHHTC
T ss_pred ccCCCCCccCCCCCcCC---cCceEeeCCeEECHHHHHHHhc
Confidence 33445789999998884 2334445677889998865543
No 164
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=36.37 E-value=1.9 Score=22.21 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=11.5
Q ss_pred CccccccCCcceeeC
Q psy11857 73 GTLRCPICREQITIP 87 (129)
Q Consensus 73 ~~~~CP~Cr~~~~~~ 87 (129)
..+.||.|+..+...
T Consensus 22 P~IrCpyCGyrii~K 36 (48)
T 4ayb_P 22 PGVRCPYCGYKIIFM 36 (48)
T ss_dssp SSSCCTTTCCSCEEC
T ss_pred CCcccCccCcEEEEE
Confidence 467999999877654
No 165
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.32 E-value=35 Score=15.71 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=20.8
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr 81 (129)
.+.|++|...| .. ..-+........+ ...+.||.|.
T Consensus 10 ~~~C~~C~k~f----~~-----------~~~l~~H~~~H~~-~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRF----KR-----------KDRMSYHVRSHDG-SVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEEC----SC-----------HHHHHHHHHHHSC-CCCCCCCCCC
T ss_pred CCcCCCCCccc----CC-----------HHHHHHHHHHccC-CCCCCCcCCC
Confidence 57888888888 32 2233333333221 3467898884
No 166
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=36.22 E-value=2.2 Score=22.96 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=29.8
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
....|.+|.+.- . +++ .|...|...|+..-+...+ ...+.||.|...
T Consensus 8 ~~~~C~vC~~~g-----~-ll~Cd~C~~~fH~~Cl~ppl~~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG-----E-LLCCDTCPSSYHIHCLNPPLPEIP--NGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS-----S-CBCCSSSCCCBCSSSSSSCCSSCC--SSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC-----C-EEEcCCCCHHHcccccCCCcCcCC--CCccCChhhcCc
Confidence 356799998622 1 222 4777888888875333221 357899999754
No 167
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=36.14 E-value=38 Score=18.38 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=22.8
Q ss_pred ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|. .. .-+........+ ...+.|+.|.+.+.
T Consensus 3 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H~~-~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 3 PFQCRICMRNFS----RS-----------DHLTTHIRTHTG-EKPFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEES----CH-----------HHHHHHHHHHHC-CCCEECTTTCCEES
T ss_pred CCcCCCCCCccC----CH-----------HHHHHHHHHcCC-CCCccCCCCCCccC
Confidence 468999998883 32 122232222211 24578998887665
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.87 E-value=18 Score=18.97 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=24.3
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHH
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~ 64 (129)
...+-+.|..|...+. .......=|..||..|..+.
T Consensus 27 ~H~~CF~C~~C~~~L~---~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 27 WHVEHFVCAKCEKPFL---GHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp EETTTCBCTTTCCBCS---SSCCEEETTEEECHHHHHHH
T ss_pred cccCcCEECCCCCCCC---CCceEeECCcEECHHHHHHH
Confidence 3445688999998884 23334456778888887654
No 169
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.13 E-value=25 Score=18.68 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.6
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
..+-+.|..|...+. ..+....=|..||..|..+.+.
T Consensus 30 H~~CF~C~~C~~~L~---~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 30 HEHCFLCSGCEQPLG---SRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp ETTTCBCTTTCCBTT---TSCEEEETTEEEEHHHHHHHTS
T ss_pred CcccCeECCCCCcCC---CCccCCcCCeEECHHHHHHHcc
Confidence 345688999998885 2344555677889988865443
No 170
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=35.08 E-value=14 Score=20.34 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=23.1
Q ss_pred CccccccccccccCCCCceEeecC-CchhHHHhHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPC-SHTVCLHCLSRIA 65 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~C-gH~fC~~Cl~~~~ 65 (129)
+..-|-||.+.= .-+-+.| |..||..|....-
T Consensus 7 e~pWC~ICneDA-----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDA-----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCC-----CEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCC-----eEEecCCCCceehHHHHHHHc
Confidence 345689998753 3345578 8899999988754
No 171
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.30 E-value=5.3 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.592 Sum_probs=20.4
Q ss_pred cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 51 PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 51 ~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.|...|...|+..-+...+ .....||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P--~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMP--KGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCC--SSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCC--CCCeECCCCCC
Confidence 4888888888865443322 34689999975
No 172
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.27 E-value=14 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred ccccccccccccCCCCceEeecCCchhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLH 59 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~ 59 (129)
...|..|.+.+. -.+..=.||.+||..
T Consensus 15 ~~rC~~C~kkvg---l~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVG---LTGFMCRCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCC---TTCEECSSSCEECTT
T ss_pred CCcChhhCCccC---ccCEEeecCCEeccc
Confidence 578999998763 234555799999984
No 173
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=34.12 E-value=3.4 Score=23.51 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=26.7
Q ss_pred ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.|.+|...-+ ....++ .|...|...|+..-+...+ .+....||.|+.
T Consensus 28 ~C~vC~~~~d---~~~ll~CD~C~~~yH~~Cl~PpL~~~P-~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC---GGGEEECTTTCCEEETTTSSSCCSSCC-SSSCCCCTTTC-
T ss_pred cCCccCCCCC---CcceeEeCCCCCccCcccCCCcccCCC-CCCceECcCccc
Confidence 4566665432 233333 4888888888875444322 122388999964
No 174
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.57 E-value=3.8 Score=23.24 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=28.6
Q ss_pred ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.|.+|...-+ ...+++ .|...|...|+..-+..-+ .+....||.|..
T Consensus 28 ~C~vC~~~~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE---PNMQLLCDECNVAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC---STTEEECSSSCCEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred CCcCcCCcCC---CCCEEEcCCCCccccccccCCCccCCC-CCCCcCCcCccC
Confidence 6778886432 223333 4888899999875433322 122688999864
No 175
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.36 E-value=24 Score=18.82 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=24.2
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHH
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~ 64 (129)
...+-+.|..|...+. .......=|..||..|..+.
T Consensus 31 wH~~CF~C~~C~~~L~---~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 31 WHNDCFNCKKCSLSLV---GRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp ECTTTCBCSSSCCBCT---TSCCEECSSSEECHHHHHTC
T ss_pred cCcccCEeccCCCcCC---CCccEeECCEEEChhHcCcc
Confidence 3445689999998884 23344456777888887543
No 176
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=33.26 E-value=22 Score=23.24 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=32.3
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
..+-+.|..|...+.. ......=|..||..|..+.+.. .|..|...
T Consensus 139 H~~CF~C~~C~~~L~~---~~~~~~~g~~yC~~cy~~~f~~--------kc~~C~~~ 184 (192)
T 1b8t_A 139 HKSCFRCAKCGKSLES---TTLADKDGEIYCKGCYAKNFGP--------KGFGFGQG 184 (192)
T ss_dssp CTTTCBCTTTCCBCCS---SSEEEETTEEEEHHHHHHHTCC--------CCCCCCCC
T ss_pred chhcCCccccCCCCCC---CcccccCCEEeCHHHHHHhcCC--------cCCCCCCc
Confidence 3456889999988852 2344557888999998776544 67777654
No 177
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=33.00 E-value=4.9 Score=27.01 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=30.6
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
...|.+|.+-= + .++ .|...|+..|+...+...+ .+.+.||.|+...
T Consensus 7 ~~~C~~C~~~g-----~-ll~Cd~C~~~~H~~Cl~p~l~~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGG-----D-LLCCEKCPKVFHLTCHVPTLLSFP--SGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCE-----E-EEECSSSSCEECTTTSSSCCSSCC--SSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC-----c-eEEcCCCCCccCCccCCCCCCCCC--CCCEEeCceeCcc
Confidence 45699998532 1 233 4888888999865433322 3578999998754
No 178
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=32.98 E-value=17 Score=17.30 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=8.1
Q ss_pred CCCCCccccccccC
Q psy11857 115 IPKCSTHNSQIKKL 128 (129)
Q Consensus 115 ~~~C~~H~~~~~~~ 128 (129)
+..|+.|+ +.++|
T Consensus 3 ~~~C~~H~-e~l~l 15 (42)
T 1fre_A 3 LEKCSEHD-ERLKL 15 (42)
T ss_dssp -CCCCSSC-SSCCC
T ss_pred cccchhhC-CeeeE
Confidence 45788888 45653
No 179
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=32.68 E-value=17 Score=20.17 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=11.5
Q ss_pred CccccccCCcceee
Q psy11857 73 GTLRCPICREQITI 86 (129)
Q Consensus 73 ~~~~CP~Cr~~~~~ 86 (129)
....||.|++.+..
T Consensus 8 ~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 8 ITVNCPTCGKTVVW 21 (68)
T ss_dssp CEEECTTTCCEEEC
T ss_pred CcCcCCCCCCcccc
Confidence 45789999999874
No 180
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.77 E-value=22 Score=18.89 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=25.2
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
..+-+.|..|...+.. ......=|..||..|..+.+.
T Consensus 30 H~~CF~C~~C~~~L~~---~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 30 HETCFICHRCQQPIGT---KSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp ETTTTCCSSSCCCCCS---SSEEEETTEEEEHHHHHHHTS
T ss_pred cccCCcccccCCccCC---CccCccCCeEECHHHHhHHhC
Confidence 3456889999988852 234444577889998866543
No 181
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.37 E-value=26 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=19.9
Q ss_pred ccccccccccccCCCCceEeecCCchhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLH 59 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~ 59 (129)
...|..|...+. -.+..=-||.+||..
T Consensus 15 ~~rC~~C~kkvg---l~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVG---VMGFKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCT---TSCEECTTSCEECSS
T ss_pred CCcChhhCCccc---ccCeEeecCCEeccc
Confidence 468999998763 234555799999984
No 182
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.32 E-value=66 Score=17.42 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=9.8
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 64 ~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 64 KPYICQSCGKGFS 76 (95)
T ss_dssp SSBCCSSSCCCBS
T ss_pred CceECCCccchhC
Confidence 5688999987654
No 183
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.28 E-value=30 Score=18.94 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=25.9
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~ 67 (129)
..+-+.|..|...+.. ......=|..||..|..+.+..
T Consensus 40 H~~CF~C~~C~~~L~~---~~~~~~~~~~yC~~cy~~~f~~ 77 (82)
T 1x63_A 40 HKDCFTCSNCKQVIGT---GSFFPKGEDFYCVTCHETKFAS 77 (82)
T ss_dssp ETTTCCCSSSCCCCTT---SCEEEETTEEEEHHHHHHHTSC
T ss_pred ccccCchhhCCCccCC---CccEeeCCEEECHHHHHHHhCC
Confidence 3456889999988852 2344456778899888765543
No 184
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.10 E-value=5.3 Score=23.99 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=28.3
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr 81 (129)
++..|.+|.+.-+ ....+. .|+..|...|+....... ....+.||.|+
T Consensus 6 ~~~~C~~C~~~g~---~~~ll~C~~C~~~~H~~Cl~~~~~~~--~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGD---LLDQFFCTTCGQHYHGMCLDIAVTPL--KRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCC---TTTSEECSSSCCEECTTTTTCCCCTT--TSTTCCCTTTC
T ss_pred CCCCCcCCCCCCC---CcCCeECCCCCCCcChHHhCCccccc--cccCccCCcCC
Confidence 3567999987542 122222 588888888986543221 12456677664
No 185
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=30.66 E-value=5.7 Score=26.13 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
+-.|.+|.+-= + .++ .|...|...|+...+...+ .+.+.||.|+...
T Consensus 4 ~~~C~~C~~~g-----~-ll~Cd~C~~~~H~~C~~p~l~~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG-----E-LLCCEKCPKVFHLSCHVPTLTNFP--SGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS-----S-CEECSSSSCEECTTTSSSCCSSCC--SSCCCCTTTSCSS
T ss_pred CCccccCCCCC-----e-eeecCCCCcccCccccCCCCCCCC--CCCEECccccCcc
Confidence 45689998532 1 222 4877888888755433222 3568999998754
No 186
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=30.60 E-value=1.6 Score=23.42 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=27.0
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 83 (129)
+..|.+|.+.- . .++ .|...|...|+..-+...+ .....||.|...
T Consensus 5 ~~~C~vC~~~g-----~-ll~Cd~C~~~fH~~Cl~ppl~~~p--~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKSG-----Q-LLMCDTCSRVYHLDCLDPPLKTIP--KGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCCS-----S-CEECSSSSCEECGGGSSSCCSSCC--CSCCCCHHHHHH
T ss_pred CCCCcCCCCCC-----c-EEEcCCCCcCEECCcCCCCcCCCC--CCceEChhccCh
Confidence 46788887631 1 222 4777788888764333211 346788888654
No 187
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.60 E-value=1.5 Score=23.21 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred CccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.+..|.+|.+.- . +++ .|...|...|+..-+...+ .....||.|..
T Consensus 8 ~~~~C~vC~~~g-----~-ll~Cd~C~~~~H~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSG-----Q-LLMCDTCSRVYHLDCLDPPLKTIP--KGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSS-----C-CEECSSSSCEECSSSSSSCCCSCC--CSSCCCHHHHC
T ss_pred CCCCCccCCCCC-----e-EEEcCCCCcceECccCCCCcCCCC--CCceEChhhhC
Confidence 356789998632 1 222 4777788888864333211 34677888753
No 188
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=30.54 E-value=10 Score=24.59 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=31.4
Q ss_pred CccccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
+...| +|...++. .-.++ .|..-|+..|+.-..... .....+.||.|+...
T Consensus 7 ~~~~C-~C~~~~~~---~~~mi~Cd~C~~WfH~~Cv~~~~~~~-~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE---SKFYIGCDRCQNWYHGRCVGILQSEA-ELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCT---TSCEEECTTTCCEEEHHHHTCCHHHH-TTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCC---CCCEeECCCCCchhChhhcCCchhhc-cCccCeecCCCcchh
Confidence 46778 99988742 12233 477778888885322221 013578999998654
No 189
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=30.25 E-value=64 Score=21.67 Aligned_cols=56 Identities=16% Similarity=0.388 Sum_probs=32.0
Q ss_pred ccccccccccccCCCCceE-eec-C---CchhHHHhHHHH-------------HHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPK-LLP-C---SHTVCLHCLSRI-------------AASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~-~l~-C---gH~fC~~Cl~~~-------------~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.-.|+.|.+.-...+.... .-+ - -++.|..|.... +..|...+....||+|+....
T Consensus 75 ~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 75 KKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred CeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 4579999986543222222 222 3 378999997532 111111123378999998765
No 190
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=29.42 E-value=6.6 Score=21.84 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=28.9
Q ss_pred CccccccccccccCCCCceEeec-----CC-chhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLP-----CS-HTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~-----Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
+...| +|.+..+ .. ++. |. .-|...|+.- ... ....+.||.|+...
T Consensus 15 ~~~~C-~C~~~~~----g~-MI~CD~~~C~~~wfH~~Cvgl--~~~--p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY----GE-MIGCDNPDCSIEWFHFACVGL--TTK--PRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC----SS-EECCSCSSCSCCCEETTTTTC--SSC--CSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC----CC-EeEeeCCCCCCccEecccCCc--CcC--CCCCEECCCCCccc
Confidence 35678 8998763 22 443 54 4688888862 221 13578999997653
No 191
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.13 E-value=3.3 Score=29.95 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=9.9
Q ss_pred cCccccccccccc
Q psy11857 28 ESFLTCGTCLCMY 40 (129)
Q Consensus 28 ~~~l~C~iC~~~~ 40 (129)
+..-.||+|...-
T Consensus 180 ~~~~~CPvCGs~P 192 (309)
T 2fiy_A 180 ESRTLCPACGSPP 192 (309)
T ss_dssp TTCSSCTTTCCCE
T ss_pred ccCCCCCCCCCcC
Confidence 4467899999765
No 192
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.91 E-value=12 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.680 Sum_probs=19.7
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~ 62 (129)
....|++|.+.+- .. |-.+|..|..
T Consensus 162 ~~~~C~~CGE~~~----~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYP----AQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEE----GG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChh----hC-----CCcCCccccC
Confidence 4788999999883 33 8889999963
No 193
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.89 E-value=41 Score=18.40 Aligned_cols=34 Identities=15% Similarity=-0.055 Sum_probs=23.2
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCC
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR 88 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 88 (129)
+.+.||+|...+.. +. . .+...|+.|+..+...+
T Consensus 9 eiL~CP~ck~~L~~---~~-------------------~----~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 9 EVLACPKDKGPLRY---LE-------------------S----EQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CCCBCTTTCCBCEE---ET-------------------T----TTEEEETTTTEEEEEET
T ss_pred HHhCCCCCCCcCeE---eC-------------------C----CCEEEcCCCCccccCCC
Confidence 47899999987620 10 1 24678999988777653
No 194
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.62 E-value=25 Score=18.50 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=10.0
Q ss_pred Cccccccccccc
Q psy11857 29 SFLTCGTCLCMY 40 (129)
Q Consensus 29 ~~l~C~iC~~~~ 40 (129)
+.+.||+|...+
T Consensus 9 ~iL~CP~c~~~L 20 (56)
T 2kpi_A 9 EILACPACHAPL 20 (56)
T ss_dssp TSCCCSSSCSCE
T ss_pred hheeCCCCCCcc
Confidence 478999999876
No 195
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.59 E-value=18 Score=14.52 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=8.7
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 36788898888
No 196
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=28.48 E-value=5.2 Score=27.63 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=25.9
Q ss_pred ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
.|.+|...-+ ....++ .|...|...|+..-+..-+ .+....||.|..
T Consensus 176 ~C~vC~~~~~---~~~lL~CD~C~~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC-----CCEECSSSCCEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CCcCCCCCCC---CCCeEEcCCCCcceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 5778876431 122233 4888899999875444322 122788999965
No 197
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.41 E-value=25 Score=15.26 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=10.1
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 4678999988664
No 198
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.31 E-value=27 Score=19.62 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=18.1
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIA 65 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~ 65 (129)
+-+.|..|...+.. ......=|..||..|..+.+
T Consensus 50 ~CF~C~~C~~~L~~---~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 50 ECFVCADCNLNLKQ---KGYFFVEGELYCETHARART 83 (89)
T ss_dssp TTCCCSSSCCCTTT---SCCEEETTEEECHHHHHHHS
T ss_pred cCCEecCCCCCCCC---CCeEeECCEEECHHHHHHHh
Confidence 34667777766632 12222345567777665443
No 199
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.51 E-value=3.3 Score=24.34 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=27.3
Q ss_pred cCccccccccccccCCCCceEeec---CC---chhHHHhHHHHHHhccCCCCcccccc-CCcc
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLP---CS---HTVCLHCLSRIAASQTRETGTLRCPI-CREQ 83 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~---Cg---H~fC~~Cl~~~~~~~~~~~~~~~CP~-Cr~~ 83 (129)
.+.+.| ||....+ .. ++. |. .-|...|+.- ... ....+.||. |++.
T Consensus 24 ~~~~yC-iC~~~~~----g~-MI~CD~c~C~~eWfH~~CVgl--~~~--p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY----GP-MVACDNPACPFEWFHYGCVGL--KQA--PKGKWYCSKDCKEI 76 (90)
T ss_dssp CCSCCS-TTTCCCS----SS-EECCCSSSCSCSCEETTTSSC--SSC--TTSCCCSSHHHHHH
T ss_pred CCCcEE-EeCCCCC----CC-EEEecCCCCccccCcCccCCC--CcC--CCCCccCChhhcch
Confidence 346778 9998653 22 443 33 4577788752 111 135789999 8754
No 200
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=27.43 E-value=6.4 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=27.8
Q ss_pred cccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857 31 LTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (129)
Q Consensus 31 l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 84 (129)
-.|.+|.+-= . ++ .|...|+..|+..-+...+ .+.+.||.|+...
T Consensus 3 ~~C~~C~~~g----~---ll~Cd~C~~~~H~~Cl~p~l~~~p--~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPG----D---LVMCNQCEFCFHLDCHLPALQDVP--GEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCS----S---CCCCTTTCCBCCSTTSTTCCSSCC--CTTCCTTTTSCSC
T ss_pred CcCccCCCCC----c---eeECCCCCchhccccCCCCcccCC--CCCCCCcCccCCC
Confidence 4588887432 1 22 3667788888864333222 3578999998653
No 201
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.37 E-value=18 Score=14.44 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 3 ~~~C~~C~k~f 13 (28)
T 2kvf_A 3 PYSCSVCGKRF 13 (28)
T ss_dssp SEECSSSCCEE
T ss_pred CccCCCCCccc
Confidence 46788888887
No 202
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=27.23 E-value=61 Score=16.89 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|++|...|
T Consensus 2 ~~C~~C~~~f 11 (82)
T 2kmk_A 2 FDCKICGKSF 11 (82)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCcccc
Confidence 4688888887
No 203
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.08 E-value=83 Score=17.90 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.3
Q ss_pred cccccccccccc
Q psy11857 30 FLTCGTCLCMYD 41 (129)
Q Consensus 30 ~l~C~iC~~~~~ 41 (129)
.+.|++|...|.
T Consensus 7 ~~~C~~C~~~f~ 18 (124)
T 2dlq_A 7 GVECPTCHKKFL 18 (124)
T ss_dssp SCCCTTTCCCCS
T ss_pred CCCCCCCCCcCC
Confidence 578888888774
No 204
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=27.04 E-value=27 Score=17.28 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.1
Q ss_pred CCCCCCccccccccC
Q psy11857 114 IIPKCSTHNSQIKKL 128 (129)
Q Consensus 114 ~~~~C~~H~~~~~~~ 128 (129)
....|+.|..+.|+|
T Consensus 5 ~~~~C~~H~~e~l~l 19 (50)
T 2yvr_A 5 RTVYCNVHKHEPLVL 19 (50)
T ss_dssp CSCBCSSSTTCBCCE
T ss_pred CCCcCcCCCCCCEEE
Confidence 456799995456654
No 205
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.75 E-value=26 Score=19.18 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=17.1
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
+-+.|..|...+. .......=|..||..|..+.+.
T Consensus 40 ~CF~C~~C~~~L~---~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 40 ECYVCTDCGTNLK---QKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp TTTSCSSSCCCHH---HHCCEESSSCEECHHHHHHHHS
T ss_pred CcCeeCCCCCCCC---CCCeEeECCEEECHHHHHHHhC
Confidence 3456666666553 1122233455566666655443
No 206
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.72 E-value=19 Score=14.31 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 46788888887
No 207
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.68 E-value=29 Score=14.69 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=10.3
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 4678999988765
No 208
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=55 Score=17.69 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=26.1
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
+..+-+.|..|...+. .......=|..||..|..+.+.
T Consensus 37 ~H~~CF~C~~C~~~L~---~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 37 WHRECLVCTGCQTPLA---GQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp ECTTTCBCSSSCCBCT---TCCEEECSSSEEEHHHHHHHTT
T ss_pred hhhhhCCcccCCCcCC---CCeeEeECCEEECHHHHHHHcC
Confidence 3445688999998884 2344555677899998876544
No 209
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=26.57 E-value=35 Score=17.78 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=10.0
Q ss_pred CCCCCCccccccccC
Q psy11857 114 IIPKCSTHNSQIKKL 128 (129)
Q Consensus 114 ~~~~C~~H~~~~~~~ 128 (129)
....|..|+.+.++|
T Consensus 7 ~~~~C~~H~~e~l~l 21 (64)
T 2d8u_A 7 GHPMCKEHEDEKINI 21 (64)
T ss_dssp CCCCCSSCTTCCCCS
T ss_pred CCCcCcCcCCCccce
Confidence 456799995456654
No 210
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.49 E-value=8.9 Score=22.99 Aligned_cols=54 Identities=17% Similarity=0.434 Sum_probs=29.9
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHh--c--cCCCCccccccCCcce
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAAS--Q--TRETGTLRCPICREQI 84 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~--~--~~~~~~~~CP~Cr~~~ 84 (129)
...|++|...|+.. ..-+.- .|..=|...|+.-.... . ......+.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~-~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTT-SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCC-CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999998521 122222 25555777776322111 0 0112578999998653
No 211
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=26.02 E-value=57 Score=17.40 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=9.2
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 64 ~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 64 RPFQCQKCDRAFS 76 (89)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCcccC
Confidence 4578888877654
No 212
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.82 E-value=46 Score=18.25 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=23.3
Q ss_pred CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCC
Q psy11857 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR 88 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 88 (129)
+.+.||+|...+. -- . . .+...|+.|+..+...+
T Consensus 7 ~iL~CP~ck~~L~----~~-~-----------------~----~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 7 DILVCPVTKGRLE----YH-Q-----------------D----KQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CCCBCSSSCCBCE----EE-T-----------------T----TTEEEETTTTEEEEEET
T ss_pred hheECCCCCCcCe----Ee-C-----------------C----CCEEEcCCCCcEecCCC
Confidence 4789999998772 10 0 0 24678999998887653
No 213
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.79 E-value=26 Score=13.90 Aligned_cols=12 Identities=42% Similarity=0.905 Sum_probs=8.9
Q ss_pred ccccccCCccee
Q psy11857 74 TLRCPICREQIT 85 (129)
Q Consensus 74 ~~~CP~Cr~~~~ 85 (129)
.+.|+.|.+.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 357999987654
No 214
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.76 E-value=30 Score=14.92 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=10.3
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 4678999988765
No 215
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.23 E-value=21 Score=21.15 Aligned_cols=12 Identities=33% Similarity=1.068 Sum_probs=9.3
Q ss_pred ccccccCCccee
Q psy11857 74 TLRCPICREQIT 85 (129)
Q Consensus 74 ~~~CP~Cr~~~~ 85 (129)
...||+|+..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 447999988765
No 216
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.19 E-value=23 Score=13.92 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=7.5
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|.+|...|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 4688888777
No 217
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.06 E-value=33 Score=14.67 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=10.3
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elt_A 8 KPYKCPQCSYASA 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCCCCCCCCcccC
Confidence 4678999988765
No 218
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=25.03 E-value=64 Score=19.58 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=28.2
Q ss_pred ccccccccccccC-----------CCCceEeec-CCchhHHH-hHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDG-----------GEHTPKLLP-CSHTVCLH-CLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~-----------~~~~p~~l~-CgH~fC~~-Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...|.. .+..|..=+ ||-+|-.. -+........+ ...+.|+.|.+.+.
T Consensus 22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C~k~F~ 89 (133)
T 2lt7_A 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG-ERRYQCLACGKSFI 89 (133)
T ss_dssp EEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHT-CCCEEESSSCCEES
T ss_pred CeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCC-CccccCCCCCCCcC
Confidence 4789999998852 112233322 55555432 23333322211 23567777776554
No 219
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=24.89 E-value=78 Score=16.84 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=10.0
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 61 ~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 61 KPFACDICGRKFA 73 (90)
T ss_dssp CCEECTTTCCEES
T ss_pred CCccCCCCCchhC
Confidence 4678999987764
No 220
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=33 Score=14.74 Aligned_cols=13 Identities=15% Similarity=0.682 Sum_probs=10.4
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elq_A 8 KPFKCSLCEYATR 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 4688999988765
No 221
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.80 E-value=32 Score=14.91 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=10.4
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elp_A 8 RAMKCPYCDFYFM 20 (37)
T ss_dssp CCEECSSSSCEEC
T ss_pred CCeECCCCChhhc
Confidence 4678999988765
No 222
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.56 E-value=29 Score=13.80 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=9.3
Q ss_pred ccccccCCccee
Q psy11857 74 TLRCPICREQIT 85 (129)
Q Consensus 74 ~~~CP~Cr~~~~ 85 (129)
.+.|+.|.+.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 357999988765
No 223
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.50 E-value=54 Score=18.57 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=23.9
Q ss_pred ccccccccccc-cCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMY-DGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~-~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|++|...| . . ..-+....... ....+.|+.|.+.+.
T Consensus 34 ~~~C~~C~k~F~~---~------------~~~L~~H~~~h--~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 34 SVSCPTCQAVGRK---T------------IEGLKKHMENC--KQEMFTCHHCGKQLR 73 (96)
T ss_dssp CEECTTTCSCEES---S------------HHHHHHHHHHH--CCCCCCCSSSCCCCS
T ss_pred CcCCCCCCCCccc---C------------HHHHHHHHHHH--CCCCeECCCCCCeeC
Confidence 46788888777 4 1 22344444333 135789999988654
No 224
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.48 E-value=26 Score=13.80 Aligned_cols=12 Identities=25% Similarity=0.916 Sum_probs=8.9
Q ss_pred ccccccCCccee
Q psy11857 74 TLRCPICREQIT 85 (129)
Q Consensus 74 ~~~CP~Cr~~~~ 85 (129)
.+.|+.|.+.+.
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 357999987765
No 225
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.48 E-value=26 Score=18.46 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR 63 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~ 63 (129)
..+-+.|..|...+..+ .....=|..||..|..+
T Consensus 36 H~~CF~C~~C~~~L~~~---~~~~~~g~~yC~~~y~~ 69 (72)
T 3f6q_B 36 HEQCFVCAQCFQQFPEG---LFYEFEGRKYCEHDFQM 69 (72)
T ss_dssp ETTTSSCTTTCCCCGGG---CCEEETTEEECHHHHHH
T ss_pred CcCCCcccCCCCCCCCC---CeEeECCeEeCHHHHHH
Confidence 34467778888777421 22233466777777654
No 226
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.04 E-value=16 Score=14.41 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=7.8
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|++|...|
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 5688888877
No 227
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.13 E-value=28 Score=14.90 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=9.6
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elr_A 9 THLCDMCGKKF 19 (36)
T ss_dssp SCBCTTTCCBC
T ss_pred CeecCcCCCCc
Confidence 57899999988
No 228
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.82 E-value=22 Score=14.24 Aligned_cols=11 Identities=18% Similarity=0.316 Sum_probs=8.5
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvg_A 3 PYRCPLCRAGC 13 (27)
T ss_dssp TEEETTTTEEE
T ss_pred CcCCCCCCccc
Confidence 46788888877
No 229
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=37 Score=14.84 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.7
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elm_A 8 HLYYCSQCHYSSI 20 (37)
T ss_dssp CEEECSSSSCEEE
T ss_pred cCeECCCCCcccC
Confidence 4688999998876
No 230
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.76 E-value=36 Score=14.43 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.3
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 1srk_A 6 RPFVCRICLSAFT 18 (35)
T ss_dssp SCEECSSSCCEES
T ss_pred cCeeCCCCCcccC
Confidence 4678999988765
No 231
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=35 Score=18.41 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=24.7
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
....+-+.|..|...+..+ ......=|..||..|......
T Consensus 26 ~wH~~CF~C~~C~~~L~~~--~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 26 HYHPSCALCVRCGQMFAEG--EEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CBCTTTSCCSSSCCCCCSS--CCCEEETTEEECTTHHHHTSS
T ss_pred CCCCCcCEeCCCCCCCCCC--CeeEeeCCEEEChHHChHhhc
Confidence 3344568899999888411 223344566788888765443
No 232
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.56 E-value=94 Score=16.75 Aligned_cols=41 Identities=15% Similarity=0.485 Sum_probs=27.4
Q ss_pred ccccCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHh
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~ 67 (129)
.+..+-+.|..|...+..+ ....+ .=|..||..|..+.+..
T Consensus 36 ~~H~~CF~C~~C~~~L~~g--~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 36 KYHPECFACMSCKVIIEDG--DAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp CBCTTSCBCTTTCCBCCTT--SCEEECSSSCEEEHHHHHHHHCT
T ss_pred eeccccCCccCCCCccCCC--CcEEEeeCCEEECHHHHHHHhcC
Confidence 3344568899999888421 33443 56778999998776654
No 233
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.31 E-value=24 Score=14.10 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|.+|...|
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 45688888777
No 234
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.26 E-value=36 Score=16.52 Aligned_cols=15 Identities=13% Similarity=0.561 Sum_probs=11.7
Q ss_pred CCccccccCCcceee
Q psy11857 72 TGTLRCPICREQITI 86 (129)
Q Consensus 72 ~~~~~CP~Cr~~~~~ 86 (129)
.....||.|++.+..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 356789999988773
No 235
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=23.09 E-value=59 Score=18.71 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=11.8
Q ss_pred CccccccCCcceee
Q psy11857 73 GTLRCPICREQITI 86 (129)
Q Consensus 73 ~~~~CP~Cr~~~~~ 86 (129)
-.+.||.|+..+.-
T Consensus 50 F~FkCP~CgEEFyG 63 (95)
T 2k5c_A 50 FVFKCPVCGEEFYG 63 (95)
T ss_dssp SEEECTTTCCEEET
T ss_pred HhhcCCCccHHHhc
Confidence 47899999999874
No 236
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.00 E-value=1e+02 Score=18.36 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.2
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS 67 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~ 67 (129)
..+-+.|..|...+.. .......=|..||..|..+.+..
T Consensus 33 H~~CF~C~~C~~~L~~--g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 33 HLECFKCAACQKHFSV--GDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CTTTCBCTTTCCBCCT--TCEEEECSSSEEEGGGHHHHHHH
T ss_pred ccccCccccCCCCCCC--CCcEEeeCCEEEcHHHhHHHhcc
Confidence 3457899999998831 13345556888999999887765
No 237
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=42 Score=18.97 Aligned_cols=49 Identities=31% Similarity=0.574 Sum_probs=30.1
Q ss_pred cCccccccccccccC-CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 28 ESFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~-~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
..+-.|..|.+.|.- .++-.+=-.|.|..|.+|-.... ...+.|-+|.+
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~------~~~W~C~VC~k 72 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQES------NGTWRCKVCSG 72 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECS------TTCEEEHHHHS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccccCC------CCCEEEeeCch
Confidence 346789999998742 22333333699999998843211 13567777654
No 238
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.87 E-value=17 Score=20.10 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=18.7
Q ss_pred ccccccccccccCCCCce----EeecCCchhHHH
Q psy11857 30 FLTCGTCLCMYDGGEHTP----KLLPCSHTVCLH 59 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p----~~l~CgH~fC~~ 59 (129)
...|..|.+.. .-+ ..--||.+||..
T Consensus 15 ~~rC~~C~kk~----gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKL----ELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBC----CHHHHHHHCCSSSCCCCTT
T ss_pred CCcchhhCCee----cccccCceEecCCCEehhc
Confidence 46899999877 333 233699999984
No 239
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.85 E-value=30 Score=18.11 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=20.8
Q ss_pred cCccccccccccccCCCCceEeecCCchhH-HHhHH
Q psy11857 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVC-LHCLS 62 (129)
Q Consensus 28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC-~~Cl~ 62 (129)
.+-+.|..|...+. .......=|..|| ..|..
T Consensus 30 ~~CF~C~~C~~~L~---~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 30 TECFLCSCCSKCLI---GQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp TTTSBCTTTCCBCT---TSCCEEETTEEESSHHHHH
T ss_pred CCCEECCCCCCcCC---CCceEEECCEEecCHHHhh
Confidence 45688999988884 2233344467778 77754
No 240
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.84 E-value=54 Score=18.51 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=10.4
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 64 ~~~~C~~C~~~f~ 76 (110)
T 2csh_A 64 KPYECNICAKRFM 76 (110)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeeCCCCcchhc
Confidence 4689999998765
No 241
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=32 Score=18.55 Aligned_cols=33 Identities=12% Similarity=0.377 Sum_probs=19.3
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~ 62 (129)
..+-+.|..|...+.+ ......=|..||..|..
T Consensus 43 H~~CF~C~~C~~~L~~---~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 43 HDYCFHCKKCSVNLAN---KRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp ETTTCBCSSSCCBCTT---SCCCEETTEECCHHHHH
T ss_pred CcccCEehhcCCCCCC---CccEeECCEEEChHHhc
Confidence 3445778888877742 22333346667777654
No 242
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=22.52 E-value=1e+02 Score=16.70 Aligned_cols=55 Identities=18% Similarity=0.407 Sum_probs=27.3
Q ss_pred cccccc--ccccccC-----------CCCceEee---cCCchhHHH-hHHHHHHhccCCCCccccccCCccee
Q psy11857 30 FLTCGT--CLCMYDG-----------GEHTPKLL---PCSHTVCLH-CLSRIAASQTRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~i--C~~~~~~-----------~~~~p~~l---~CgH~fC~~-Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 85 (129)
.+.|.+ |...|.. ....|..- .|+-.|-.. -+........ ....+.|+.|.+.+.
T Consensus 15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-~~~~~~C~~C~~~f~ 86 (100)
T 2ebt_A 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT-GAKPFQCGVCNRSFS 86 (100)
T ss_dssp CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT-SCCSCBCSSSCCBCS
T ss_pred ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC-CCCCeECCCCcCccC
Confidence 567876 8877731 11223332 256555332 2333333221 124578888877654
No 243
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.88 E-value=19 Score=14.60 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=8.2
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
.+.|++|...|
T Consensus 3 ~~~C~~C~k~f 13 (30)
T 2lvr_A 3 PYVCIHCQRQF 13 (30)
Confidence 45788888877
No 244
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.19 E-value=7 Score=22.64 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=34.3
Q ss_pred ccccccccccccCCCCceEee--cCCchhHHHhHHHHHHhc--cCCCCccccccCCccee
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQ--TRETGTLRCPICREQIT 85 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~--~~~~~~~~CP~Cr~~~~ 85 (129)
...|.+|...-.. ....+++ .|...|...|+..-+... ......+.|+.|.....
T Consensus 16 ~~~C~vC~~~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVA-SGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCC-TTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCC-CCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 6789999986421 0133444 488899999987543310 00135789999976544
No 245
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.15 E-value=17 Score=20.00 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=26.1
Q ss_pred ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
....+-+.|..|...+.. .+....=|..||..|..+.+.
T Consensus 29 ~~H~~CF~C~~C~~~L~~---~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 29 SFHRCCFLCMVCRKNLDS---TTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp EEESSSEECSSSCCEECS---SCCEEETTEEECSHHHHHHCC
T ss_pred ccccccCccCCCCCCCCC---CCeEeeCCEEECHHHHHHHhC
Confidence 334457899999998852 233444677789888866544
No 246
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.74 E-value=19 Score=14.58 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=7.8
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|++|...|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 5688888877
No 247
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=22.11 E-value=89 Score=18.17 Aligned_cols=13 Identities=38% Similarity=1.020 Sum_probs=8.8
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 99 ~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 99 HTKVCPVCKKEFT 111 (129)
T ss_dssp CCCBCTTTCCBCS
T ss_pred CCCCCCCCCcccC
Confidence 3567888877654
No 248
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.08 E-value=17 Score=24.13 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=9.1
Q ss_pred cccccccccccc
Q psy11857 30 FLTCGTCLCMYD 41 (129)
Q Consensus 30 ~l~C~iC~~~~~ 41 (129)
...|++|.-+++
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 467888888873
No 249
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.72 E-value=28 Score=13.99 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=8.1
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|+.|...|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 5788888877
No 250
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.63 E-value=26 Score=13.97 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.1
Q ss_pred cccccccccc
Q psy11857 31 LTCGTCLCMY 40 (129)
Q Consensus 31 l~C~iC~~~~ 40 (129)
+.|++|...|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5788888887
No 251
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.61 E-value=5.1 Score=21.40 Aligned_cols=43 Identities=19% Similarity=0.515 Sum_probs=26.6
Q ss_pred ccccccccccccCCCCceEeec-----CC-chhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLP-----CS-HTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~-----Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
...| +|.+..+ . .++. |. .-|...|+.- ...+ ...+.||.|+.
T Consensus 9 ~~yC-~C~~~~~----g-~mi~CD~~~C~~~wfH~~Cvgl--~~~p--~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY----G-EMIGCDNPDCPIEWFHFACVDL--TTKP--KGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC----S-EEEECSCTTCSSCEEETGGGTC--SSCC--SSCCCCHHHHC
T ss_pred CcEE-ECCCCCC----C-CeeEeeCCCCCCCCEecccCCc--ccCC--CCCEECcCccC
Confidence 5667 9998763 2 2443 54 4688888862 2211 35788999864
No 252
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=41 Score=18.91 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=24.0
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
..+-+.|..|...+.. ......=|..||..|..+.+.
T Consensus 39 H~~CF~C~~C~~~L~~---~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 39 HISCFRCSYCNNKLSL---GTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp ETTTCBCTTTCCBCCT---TTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCCCeeCCCCCCCCC---CCcEeECCEEECHHHHHHHhC
Confidence 3456888899888742 223334567788888866544
No 253
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=34 Score=17.55 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=11.1
Q ss_pred CCccccccCCccee
Q psy11857 72 TGTLRCPICREQIT 85 (129)
Q Consensus 72 ~~~~~CP~Cr~~~~ 85 (129)
+..+.||.|...+.
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 45789999988765
No 254
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.07 E-value=4.1 Score=22.07 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=26.7
Q ss_pred ccccccccccccCCCCceEeec-----CC-chhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLP-----CS-HTVCLHCLSRIAASQTRETGTLRCPICRE 82 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~-----Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 82 (129)
...| +|.+..+ . .++. |. .-|...|+.-. .. ....+.||.|+.
T Consensus 11 ~~yC-~C~~~~~----g-~MI~CD~c~C~~~WfH~~Cvgl~--~~--p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY----G-EMIGCDNEQCPIEWFHFSCVSLT--YK--PKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC----S-EEEECSCTTCSSCEEETGGGTCS--SC--CSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC----C-CeeeeeCCCCCcccEecccCCcC--cC--CCCCEECcCccc
Confidence 5667 9998762 2 3443 44 56888888622 11 135789999965
No 255
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.01 E-value=72 Score=17.17 Aligned_cols=38 Identities=11% Similarity=0.301 Sum_probs=25.3
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA 66 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~ 66 (129)
+..+-+.|..|...+.. ......=|..||..|..+.+.
T Consensus 37 ~H~~CF~C~~C~~~L~~---~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 37 WHPECFVCGDCFTSFST---GSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp ECTTTCBCSSSCCBSCS---SCCEESSSCEECHHHHHHHHS
T ss_pred EecCcCChhhCCCCCCC---CcEEeECCEEECHHHHHHHcC
Confidence 34456889999988852 223444677889888866544
No 256
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.77 E-value=44 Score=14.26 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=10.2
Q ss_pred CccccccCCccee
Q psy11857 73 GTLRCPICREQIT 85 (129)
Q Consensus 73 ~~~~CP~Cr~~~~ 85 (129)
..+.|+.|.+.+.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elv_A 8 LLYDCHICERKFK 20 (36)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeECCCCCCccC
Confidence 4678999988765
No 257
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.75 E-value=28 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred ccccccccccccCCCCceEeecCCchhHH
Q psy11857 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCL 58 (129)
Q Consensus 30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~ 58 (129)
...|..|...- ..-+-|.|||.+|.
T Consensus 24 ~~~C~~C~~~~----~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQ----ENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCS----SEEEETTTCCEEEC
T ss_pred CCcCccccCCC----CeeeeeecCccccC
Confidence 45799998765 35668899999994
No 258
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=28 Score=18.85 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=19.3
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCL 61 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl 61 (129)
..+-+.|..|...+. .......=|..||..|.
T Consensus 32 H~~CF~C~~C~~~L~---~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 32 HSECFNCGKCSVSLV---GKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp EGGGCBCTTTCCBCS---SSCEEEETTEEEETTTT
T ss_pred CcccCChhhCCCcCC---CCceEeECCEEECHHHh
Confidence 344678888887774 23334445666666664
No 259
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.40 E-value=31 Score=22.46 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=8.2
Q ss_pred ccccccccccc
Q psy11857 30 FLTCGTCLCMY 40 (129)
Q Consensus 30 ~l~C~iC~~~~ 40 (129)
...|++|.-++
T Consensus 138 ~~~C~~CG~i~ 148 (170)
T 3pwf_A 138 VYICPICGYTA 148 (170)
T ss_dssp EEECTTTCCEE
T ss_pred eeEeCCCCCee
Confidence 45688888777
No 260
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.27 E-value=29 Score=18.71 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=21.8
Q ss_pred ccCccccccccccccCCCCceEeecCCchhHHHhHHHH
Q psy11857 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (129)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~ 64 (129)
..+-+.|..|...+.. ......=|..||..|..+.
T Consensus 36 H~~CF~C~~C~~~L~~---~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 36 HEQCFVCAQCFQQFPE---GLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp CTTTCCCTTTCCCCGG---GCSEEETTEEECHHHHHHH
T ss_pred ccccCeECCCCCCCCC---CCeEeECCeEeCHHHHHHH
Confidence 3445788888887742 2233445667888887544
No 261
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.26 E-value=28 Score=18.83 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=23.3
Q ss_pred cccCccccccccccccCCCCceEeecCCchhHH-HhHHHHH
Q psy11857 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCL-HCLSRIA 65 (129)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~-~Cl~~~~ 65 (129)
...+-+.|..|...+.. ......=|..||. .|..+.+
T Consensus 32 ~H~~CF~C~~C~~~L~~---~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 32 WHKFCLKCERCSKTLTP---GGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp EETTTCBCSSSCCBCCT---TSCEEETTEEECTTTHHHHHS
T ss_pred eeCCCCCCCCCCCccCC---CceEeECCEEecchHHHHHhc
Confidence 34456889999988852 2233445677888 5876543
No 262
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=20.11 E-value=41 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred CccccccccccccCCCCceE-eecCCchhHHHhHH
Q psy11857 29 SFLTCGTCLCMYDGGEHTPK-LLPCSHTVCLHCLS 62 (129)
Q Consensus 29 ~~l~C~iC~~~~~~~~~~p~-~l~CgH~fC~~Cl~ 62 (129)
....|++|.+.+- .++ .+.=|-.+|..|..
T Consensus 171 ~~~~C~~CGE~~~----~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 171 AKVRCDVCGEYTY----EADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp CEEECTTTCCEEE----GGGCEEETTEEECHHHHH
T ss_pred CceECCCCCCchh----hcceeeeCCcEEChhhhc
Confidence 4688999999984 332 22337788998864
Done!