RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11857
(129 letters)
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 80.1 bits (198), Expect = 3e-21
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
D L C C+ + + PKLL C HT+C CL ++ AS +RCP C +
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN---GVRCPFCSKIT 66
Query: 85 TIPRGGVAALPPSFLVNQLLD 105
I + L + V +
Sbjct: 67 RIT--SLTQLTDNLTVLKSGP 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 58.1 bits (141), Expect = 7e-13
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
FL C C PKLLPC HT+C CL E ++CPIC+ +
Sbjct: 6 FLRCQQCQAEAK----CPKLLPCLHTLCSGCL---------EASGMQCPICQAPWPLGAD 52
Query: 90 GVA 92
A
Sbjct: 53 TPA 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 50.5 bits (120), Expect = 2e-08
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
Y + +F C C K+ PC H +C CL+ S+ + CP CR
Sbjct: 325 YCEMGSTFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQG-----CPFCRC 375
Query: 83 QIT 85
+I
Sbjct: 376 EIK 378
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 45.7 bits (108), Expect = 1e-07
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
CG C+ + P LPC+HT+C C T E +L CP CR + +
Sbjct: 16 CQCGICMEIL----VEPVTLPCNHTLCKPCFQS-----TVEKASLCCPFCRRR--VSSWT 64
Query: 91 VAALPPSFLVNQLL 104
+ LVN L
Sbjct: 65 RYHTRRNSLVNVEL 78
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 43.0 bits (101), Expect = 2e-06
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E C C + P C H VC CL R +Q CP CR +
Sbjct: 50 EETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGR- 99
Query: 88 RGGVAALPPSFLVNQLLDLM 107
+ VNQ L +
Sbjct: 100 -------SYAMQVNQPLQTV 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 42.0 bits (99), Expect = 2e-06
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
+TC CL + P C+H+ C C++ S G CP+CR
Sbjct: 20 VTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 42.3 bits (99), Expect = 4e-06
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E+ L C C + L C+H+ C +C++ + CPICR+ I
Sbjct: 62 ENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKI------ECPICRKDIKSK 111
Query: 88 RGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
+L +N++++ +S + + + K+L
Sbjct: 112 T---YSLVLDNCINKMVNNLSSEVKERRIVLIRE-RKAKRL 148
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 40.7 bits (96), Expect = 5e-06
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
+TC CL + P L C H+ C CL+ + G CP+CR
Sbjct: 20 VTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 40.1 bits (93), Expect = 1e-05
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
D E + C C+ + + C + +C C RI R CP CR+
Sbjct: 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKP 59
Query: 84 IT 85
Sbjct: 60 YP 61
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 39.1 bits (90), Expect = 5e-05
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
E I E + G +L CSH L CL + + ++ G+L+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD-GSLQ 84
Query: 77 CPICREQITIPRG 89
CP C+ G
Sbjct: 85 CPSCKTIYGEKTG 97
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 39.2 bits (91), Expect = 7e-05
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E C C + + P C H VC CL R +Q CP CR +
Sbjct: 76 EQSFMCVCCQELV----YQPVTTECFHNVCKDCLQRSFKAQVFS-----CPACRHDLGQN 126
Query: 88 R 88
Sbjct: 127 Y 127
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 36.9 bits (86), Expect = 2e-04
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-AASQTRETGTLRCPICREQITIP 87
+TC CL + P L C H++C C++ + T G CP+C +
Sbjct: 13 VTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 37.4 bits (87), Expect = 2e-04
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+ L CG C + + ++P CSH C C+ + + +T +CP C +T
Sbjct: 20 DDLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSYKT------QCPTCCVTVTE 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHII 115
P L + ++++L+ ++ R H++
Sbjct: 70 PD-----LKNNRILDELVKSLNFARNHLL 93
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 36.2 bits (84), Expect = 2e-04
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+ C CL + P + C H CL C+++I + G +CP+C+ +
Sbjct: 21 VICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVR 68
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 35.6 bits (82), Expect = 4e-04
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+ C CL P LPC H C C+ + RC +CR++I
Sbjct: 13 LTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWLGK------RCALCRQEIP 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 35.3 bits (81), Expect = 6e-04
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
C C + C+H+ C+S RCP+C++ + R G
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------RCPLCQQDWVVQRIG 80
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 36.8 bits (84), Expect = 8e-04
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCL-----SRIAASQTRETGTLRC 77
+ L C C G P + C CL + + E +C
Sbjct: 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQC 364
Query: 78 PICREQITIP 87
P C+ +++
Sbjct: 365 PFCKAKLSTS 374
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 35.6 bits (82), Expect = 9e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
+ ++ ES C CL PC H C C+ + +CP+
Sbjct: 8 DVEFDPPLESKYECPICLMAL----REAVQTPCGHRFCKACIIKS-----IRDAGHKCPV 58
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSR 109
E + + P +F ++L LM +
Sbjct: 59 DNEILLENQ----LFPDNFAKREILSLMVK 84
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 34.4 bits (79), Expect = 0.001
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
E C C + +PK C H C C++ + + + +C C+E I
Sbjct: 13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAAL-----LSSSSPKCTACQESIV 61
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.9 bits (78), Expect = 0.002
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
C C+ +LPC+H+ C C+ + + CPICR Q+T
Sbjct: 13 TDEEECCICMDGR-----ADLILPCAHSFCQKCIDKWSDRHRN-------CPICRLQMT 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 34.5 bits (79), Expect = 0.002
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 31 LTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C C + P L C H C +C+S + CP+C I
Sbjct: 23 LRCSRCTNIL----REPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQD- 69
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHI 114
L + ++ ++ L S+ R +
Sbjct: 70 ----LKINRQLDSMIQLCSKLRNLL 90
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 33.3 bits (76), Expect = 0.004
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETG--TLRCPIC 80
+ C CL Y E + C C CL + +E + CP
Sbjct: 2 SSGSSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 33.6 bits (77), Expect = 0.005
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
T I + N L C C + ++ C H+ C C+ R +
Sbjct: 3 RTTRIKITELNPH-LMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSK------Y 52
Query: 77 CPICREQITIPR 88
CPIC Q+ R
Sbjct: 53 CPICDVQVHKTR 64
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 32.4 bits (74), Expect = 0.006
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+ C CL + P + C H CL C+++I + G +CP+C
Sbjct: 21 VICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 32.4 bits (74), Expect = 0.007
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 31 LTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR 88
L C C + ++P C ++ C C+ E+ CP C + P
Sbjct: 16 LLCLICKDIMT----DAVVIPCCGNSYCDECIRTAL----LESDEHTCPTCHQNDVSPD 66
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 32.8 bits (75), Expect = 0.009
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
L C CL + P C H C C+ + ++ G +CP+C+ IT
Sbjct: 22 LECPICLELIK----EPVSTKCDHIFCKFCMLK---LLNQKKGPSQCPLCKNDIT 69
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 32.1 bits (73), Expect = 0.011
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+ E C C + P + C H C C + RC IC +
Sbjct: 9 SEEEEIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFRATP------RCYICDQP 58
Query: 84 I 84
Sbjct: 59 T 59
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 33.2 bits (75), Expect = 0.012
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 11 TNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR 70
++E E + ++ C C + G+ C + L C+++ S
Sbjct: 161 HGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCET---CGIRMHLPCVAKYFQSNAE 217
Query: 71 ETGTLRCPICREQIT 85
CP C +
Sbjct: 218 PR----CPHCNDYWP 228
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 31.6 bits (72), Expect = 0.012
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C CL + LPC H C C++R + T CP+C+ +
Sbjct: 7 RCPICLEDP---SNYSMALPCLHAFCYVCITR--WIRQNPT----CPLCKVPVE 51
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 31.3 bits (71), Expect = 0.013
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 29 SFLTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQI 84
+ ++C C+ Y C H C CL + + T CP CR++I
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRKKI 54
Query: 85 T 85
Sbjct: 55 N 55
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 31.1 bits (71), Expect = 0.016
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C CL +LPC H + C + RCP+C +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY------RCPLCSGPSS 54
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 31.3 bits (71), Expect = 0.017
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 27 NESFLTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICRE 82
++C C+ Y C H C CL + + T CP CR+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRK 59
Query: 83 QIT 85
+I
Sbjct: 60 KIN 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 31.7 bits (71), Expect = 0.019
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 8 TLSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAA 66
L +V+ +I + + C E T C+H HC+SR +
Sbjct: 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88
Query: 67 SQTRETGTLRCPICREQITIPRGG 90
Q CP+ + + G
Sbjct: 89 RQV-------CPLDNREWEFQKYG 105
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 31.1 bits (70), Expect = 0.022
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + ++ C C + C + L C+++ S CP C +
Sbjct: 9 ETYPDAVKICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR----CPHCNDY 61
Query: 84 I 84
Sbjct: 62 W 62
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 30.7 bits (69), Expect = 0.025
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 31 LTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
++C C+ Y C H C CL + + T CP CR++I
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRKKIN 67
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 31.4 bits (71), Expect = 0.026
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
E E F C C+ +L P CS C C+ R Q + CP CR
Sbjct: 17 ESIAEVF-RCFICMEKL----RDARLCPHCSKLCCFSCIRRWLTEQRAQ-----CPHCRA 66
Query: 83 QITIPRGGVAALPPSFLVNQLLDLMSRQR 111
+ + L ++ + +
Sbjct: 67 PLQLRE-----LVNCRWAEEVTQQLDTLQ 90
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 30.4 bits (69), Expect = 0.028
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+C CL P ++ C H C C++R CP+C
Sbjct: 16 ASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDL---ERDFPCPVC 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 30.5 bits (69), Expect = 0.030
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
S N + + C C + C HT C C+ R RCP
Sbjct: 6 SGNLSELTPY-ILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSN------RCPK 55
Query: 80 CREQIT 85
C +
Sbjct: 56 CNIVVH 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 30.5 bits (69), Expect = 0.034
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
C CL + + + PC H CL + + + CP+C +
Sbjct: 13 NLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVRKV-------CPLCNMPVL 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.6 bits (71), Expect = 0.036
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 21 INYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+ ++ ES C CL PC H C C+ + +CP+
Sbjct: 9 VEFDPPLESKYECPICLMAL----REAVQTPCGHRFCKACIIKS-----IRDAGHKCPVD 59
Query: 81 REQITIPRGGVAALPPSFLVNQLLDLM 107
E + + P +F ++L LM
Sbjct: 60 NEILLENQ----LFPDNFAKREILSLM 82
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 30.7 bits (69), Expect = 0.055
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++C C + P C H C C+ R CP CR
Sbjct: 21 VKSISCQICEHIL----ADPVETSCKHLFCRICILRCLKVMGS-----YCPSCRYPCF 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 30.2 bits (67), Expect = 0.078
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 16 VETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGT 74
V+ +I + + C E T C+H HC+SR + Q
Sbjct: 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV----- 102
Query: 75 LRCPICREQITIPRGG 90
CP+ + + G
Sbjct: 103 --CPLDNREWEFQKYG 116
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 29.6 bits (67), Expect = 0.098
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 17 ETVSINYEDF-NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHC----LSRIAASQTRE 71
+ + + + C C Y G+ LPC H C L ++
Sbjct: 26 PEILVTEDHGAVGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWL--------QK 76
Query: 72 TGTLRCPICREQITIP 87
+GT CP+CR P
Sbjct: 77 SGT--CPVCRCMFPPP 90
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 29.7 bits (67), Expect = 0.10
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 31 LTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C C + ++P C ++ C C+ E+ CP C +
Sbjct: 14 LLCLICKDIMT----DAVVIPCCGNSYCDECIRT----ALLESDEHTCPTCHQNDV---- 61
Query: 90 GVAALPPSFLVNQLLDLM 107
P + + N+ L
Sbjct: 62 ----SPDALIANKFLRQA 75
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 30.7 bits (67), Expect = 0.12
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
+PC H V C C + +CPICR I
Sbjct: 310 FIPCGHLVVCQECAPSLR----------KCPICRGIIK 337
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 29.0 bits (65), Expect = 0.12
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTV-CLHCLSRIAASQTRETGTLRCPICRE 82
ED C LC + H V C HC R+ + CPIC++
Sbjct: 1 EDCQNLLKPC--SLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS------CPICKK 52
Query: 83 QIT 85
+I
Sbjct: 53 EIQ 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 29.7 bits (66), Expect = 0.15
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
E+ C C + P C H C CL+ I +S + C C +
Sbjct: 29 EAKYLCSACRNVL----RRPFQAQCGHRYCSFCLASILSSGPQN-----CAACVHEGI 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.4 bits (65), Expect = 0.16
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 48 KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+++PC H C C A + G CP C + +
Sbjct: 16 RMIPCKHVFCYDC-----AILHEKKGDKMCPGCSDPVQ 48
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 28.5 bits (64), Expect = 0.17
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHC-LSRIAASQTRETGTLRCPICRE 82
E+ S L C C Y GE + + LPC+H C + + + CP+CR+
Sbjct: 9 EEHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDS-------CPVCRK 60
Query: 83 QIT 85
+T
Sbjct: 61 SLT 63
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.2 bits (65), Expect = 0.23
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 22/116 (18%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTL 75
+ ++ + L C CL M C H C C+ +G
Sbjct: 42 LEIVVSPRSLHSE-LMCPICLDML----KNTMTTKECLHRFCADCIIT-----ALRSGNK 91
Query: 76 RCPICREQITIPRGGVAALPPSFLVNQLLDLM-------SRQRRHIIPKCSTHNSQ 124
CP CR+++ R +L P + L+ + + ++ + + HN+Q
Sbjct: 92 ECPTCRKKLVSKR----SLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ 143
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 28.2 bits (63), Expect = 0.24
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
PC HTV C C +++ CP+CR ++
Sbjct: 33 FCPCGHTVCCESCAAQLQ----------SCPVCRSRVE 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 27.8 bits (62), Expect = 0.27
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
LLPC HT C C+ +CP+CR+ +
Sbjct: 30 LLPCRHTCLCDGCVKYFQ----------QCPMCRQFVQ 57
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 28.1 bits (63), Expect = 0.28
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 18 TVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS---RIAASQTRETGT 74
+ N + C C+C ++ + ++LPC+H C+ + +
Sbjct: 11 SYRFNPNNHQSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANRT------- 62
Query: 75 LRCPICREQI 84
CPICR
Sbjct: 63 --CPICRADS 70
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 27.8 bits (62), Expect = 0.35
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
+PC H V C C + +CP+C IT
Sbjct: 40 FVPCGHLVTCKQCAEAVD----------KCPMCYTVIT 67
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 26.8 bits (59), Expect = 0.67
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 51 PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
C HT+C C+ + G CP C +
Sbjct: 25 VCGHTLCESCVDLLFVR-----GAGNCPECGTPL 53
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 26.6 bits (59), Expect = 1.00
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
++ C CL + + GE + LPC H C+ + + ++ CPICR I
Sbjct: 11 EDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITNKK-------CPICRVDIE 62
Query: 86 IP 87
Sbjct: 63 AQ 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 27.4 bits (60), Expect = 1.1
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 31 LTCGTCLCMY---DGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
++C C+ Y C H C CL + T R I ++
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP-TCRKKINHKRYHPI 66
Query: 88 RGGVAALPPSFLVNQLLDLMSRQRRHIIPKC 118
G + ++ +++ R + +C
Sbjct: 67 YIGSGTVSCPICMDGYSEIVQNGRLIVSTEC 97
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase,
structural genomics, PSI, protein structure initiative;
NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Length = 102
Score = 26.3 bits (58), Expect = 1.6
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 88 RG-GVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKK 127
G GV L+ +++ II CS ++K
Sbjct: 48 GGQGVGKK----LLKAVVEHARENNLKIIASCSFAKHMLEK 84
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 25.5 bits (56), Expect = 2.0
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 51 PCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
H + C C ++ CP+CR+ I
Sbjct: 27 KTGHLMACFTCAKKLKKRNKP------CPVCRQPIQ 56
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus,
structural genomics, PSI, protein structure initiative;
1.60A {Thermus thermophilus} SCOP: c.26.2.4
Length = 138
Score = 25.6 bits (55), Expect = 4.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 91 VAALPPSFLVNQLLDLMSRQRRHIIP 116
++ LPP LD+ ++ R +P
Sbjct: 104 LSTLPPGLSRWLRLDVHTQAERFGLP 129
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 25.5 bits (55), Expect = 5.3
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIA 65
C + C++DG + C+ +C +
Sbjct: 65 CNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFS 97
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 24.7 bits (53), Expect = 6.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQI 84
C +C G L+ C+ H +CL+CL+ + + + RCPIC+ +
Sbjct: 29 QFCKSCWFENKG------LVECNNHYLCLNCLTLLL------SVSNRCPICKMPL 71
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 24.8 bits (54), Expect = 8.4
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 13/40 (32%)
Query: 50 LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
+ SH H + P I +G
Sbjct: 1 MGSSHHHHHHS-------------SGLVPRGSTSYGIQKG 27
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 23.3 bits (51), Expect = 8.8
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
C CL + GE L C H C+ S + CP+CR + +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------TCPLCRLTVVV 55
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 25.2 bits (55), Expect = 9.4
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 6/37 (16%)
Query: 56 VCLHCLSRIAASQTRETGTLRCPICRE-----QITIP 87
+C C + C C QI IP
Sbjct: 1162 ICGIC-GLMTVIAKLNHNQFECKGCDNKIDIYQIHIP 1197
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 23.7 bits (51), Expect = 9.9
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 38 CMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICREQITIPR 88
C +G + +P + PC H V CL + + + T C +C+ + +
Sbjct: 21 CHCEGDDESPLITPCHCTGSLHFVHQACLQQ----WIKSSDTRCCELCKYEFIMET 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.412
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,824,763
Number of extensions: 95336
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 92
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.5 bits)