RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11857
(129 letters)
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 41.0 bits (96), Expect = 9e-07
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
FL C C PKLLPC HT+C CL ++CPIC+ +
Sbjct: 6 FLRCQQCQAEAK----CPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLGAD 52
Query: 90 GVA 92
A
Sbjct: 53 TPA 55
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 40.8 bits (95), Expect = 2e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
Y + +F C C K+ PC H +C CL+ S+ + CP CR
Sbjct: 16 YCEMGSTFQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQ-----GCPFCRC 66
Query: 83 QIT 85
+I
Sbjct: 67 EIK 69
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 39.6 bits (91), Expect = 1e-05
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
E I E + G +L CSH L CL + + ++ G+L+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD-GSLQ 84
Query: 77 CPICREQITIPRG 89
CP C+ G
Sbjct: 85 CPSCKTIYGEKTG 97
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 39.0 bits (90), Expect = 1e-05
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 16 VETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTL 75
V+ +I + + C E T C+H HC+SR ++
Sbjct: 21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ------ 74
Query: 76 RCPICREQITIPR 88
CP+ + +
Sbjct: 75 VCPLDNREWEFQK 87
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 36.2 bits (83), Expect = 5e-05
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
+ C C+ + + C + +C C RI R CP CR+
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPY 49
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 36.4 bits (84), Expect = 6e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+ + C CL + GE L C H C+ S + CP+CR + +
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------TCPLCRLTVVV 55
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 37.0 bits (85), Expect = 1e-04
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
+ L C CL + P C H C C+ ++ + G +CP+C+ IT
Sbjct: 19 QKILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKK---GPSQCPLCKNDITKR 71
Query: 88 RGGVAALPPSFLVNQLLD 105
+L S +QL++
Sbjct: 72 -----SLQESTRFSQLVE 84
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 34.4 bits (78), Expect = 8e-04
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E L C C + L C H C +C+S + CP+C I
Sbjct: 20 EKLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQ 68
Query: 88 RGGVAALPPSFLVNQLLDLMSRQRRHI 114
L + ++ ++ L S+ R +
Sbjct: 69 -----DLKINRQLDSMIQLCSKLRNLL 90
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 33.0 bits (75), Expect = 0.001
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C CL + LPC H C C++R CP+C+ +
Sbjct: 8 CPICLEDP---SNYSMALPCLHAFCYVCITRWIRQNP------TCPLCKVPVE 51
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 32.1 bits (72), Expect = 0.003
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 31 LTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C C Y + C HT+C C+ + G CP C +
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL-----FVRGAGNCPECGTPLR 54
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 30.7 bits (69), Expect = 0.014
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
F +S ++C C + P C H C C+ R CP CR
Sbjct: 18 AHFVKS-ISCQICEHIL----ADPVETSCKHLFCRICILRCLKVMGS-----YCPSCRYP 67
Query: 84 IT 85
Sbjct: 68 CF 69
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.4 bits (65), Expect = 0.025
Identities = 10/61 (16%), Positives = 11/61 (18%), Gaps = 5/61 (8%)
Query: 27 NESFLTCGTCLCMYDGG-EHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+E C C V CLS C IC
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA----CQICGVVYN 58
Query: 86 I 86
Sbjct: 59 T 59
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 28.4 bits (63), Expect = 0.14
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 91 VAALPPSFLVNQLLDLMSRQRRHIIP 116
++ LPP LD+ ++ R +P
Sbjct: 103 LSTLPPGLSRWLRLDVHTQAERFGLP 128
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.0 bits (54), Expect = 1.3
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+ C L + P ++ T + + + + + + +T
Sbjct: 7 EYFRCPISLELM----KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 58
Score = 22.4 bits (48), Expect = 8.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 70 RETGTLRCPICREQITIPRGGVAAL 94
+ ++C IC + P GG +
Sbjct: 22 HPSTIVKCIICGRTVAEPTGGKGNI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.133 0.412
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,236
Number of extensions: 19143
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 25
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)