BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11858
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
D L C C+ + + PKLL C HT+C CL ++ AS +RCP C
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN---GVRCPFC 62
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 17/67 (25%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E+F FL C C PKLLPC HT+C CL E ++CPIC Q
Sbjct: 2 EEFQ--FLRCQQC----QAEAKCPKLLPCLHTLCSGCL---------EASGMQCPIC--Q 44
Query: 84 ITIPRGG 90
P G
Sbjct: 45 APWPLGA 51
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+D S C +CM E P LPC+HT+C C T E +L CP CR +
Sbjct: 7 KDAIPSLSECQCGICMEILVE--PVTLPCNHTLCKPCFQ-----STVEKASLCCPFCRRR 59
Query: 84 IT 85
++
Sbjct: 60 VS 61
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 36 CLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C+CM DG +LPC+H+ C C+ + + CPICR Q+T
Sbjct: 19 CICM-DG--RADLILPCAHSFCQKCIDKWSDRHR------NCPICRLQMT 59
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 45 HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLL 104
+ P C H VC CL R +Q CP CR + G + P+ ++ LL
Sbjct: 89 YQPVTTECFHNVCKDCLQRSFKAQ-----VFSCPACRHDL----GQNYIMIPNEILQTLL 139
Query: 105 DLM 107
DL
Sbjct: 140 DLF 142
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 50 LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
L C+H+ C +C++ + + CPICR+ I + +L +N++++ +S
Sbjct: 69 LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNXINKMVNNLSS 119
Query: 109 --RQRRHII 115
++RR ++
Sbjct: 120 EVKERRIVL 128
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 45 HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
P + C H CL C+++I + G +CP+C+ +
Sbjct: 31 QKPVTIDCGHNFCLKCITQIGET---SCGFFKCPLCKTSV 67
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 50 LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
L C+H+ C +C++ + + CPICR+ I + +L +N++++ +S
Sbjct: 69 LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNCINKMVNNLSS 119
Query: 109 --RQRRHII 115
++RR ++
Sbjct: 120 EVKERRIVL 128
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 50 LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS- 108
L C+H+ C +C++ + + CPICR+ I + +L +N++++ +S
Sbjct: 80 LNCAHSFCSYCINEWMKRK------IECPICRKDI---KSKTYSLVLDNCINKMVNNLSS 130
Query: 109 --RQRRHII 115
++RR ++
Sbjct: 131 EVKERRIVL 139
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 192 NLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 246
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 247 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 301
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 302 VNSGFGQLGRPNPTNPPELLPSLGSYITEQ 331
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 192 NLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 246
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 247 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 301
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 302 VNSGFGQLGRPNPTNPPELLPSLGSYITEQ 331
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 219 NLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 273
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 274 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 328
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 329 VNSGFGQLGRPNPTNPPELLPSLGSYITEQ 358
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 47 PKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
P + C H CL C+++I + G +CP+C
Sbjct: 33 PVTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|D Chain D, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|D Chain D, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|D Chain D, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|D Chain D, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|D Chain D, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 300
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 205 RRGAHTQTPPLFSHGLSPLSLPDSSHAL 232
RR +HT LFSH PL L D+ A+
Sbjct: 189 RRASHTAPQVLFSHREPPLELKDTDAAV 216
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 97 SFLVNQLLDLMSRQRR-HIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEH 155
+ ++N+L + QR IP +T S + + +TVF LQ N +T E
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQ-----NRPNTDAPEER 274
Query: 156 TIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPL 215
+ ++A +R+ L E + + + + + KAD YV GA T L
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLL 329
Query: 216 FSHGLSPLSLPDSSH--ALLITRRAYVRRR 243
+ G L P+ ++ LL + +Y+ +
Sbjct: 330 VNSGFGQLGRPNPANPPELLPSLGSYITEQ 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,942,239
Number of Sequences: 62578
Number of extensions: 252161
Number of successful extensions: 664
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 58
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)