BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11858
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRTPGSNVEESSILETVTAVAAGKPLSCPNHDGNVMEF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + NK PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLDAV---NKRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRTPGSNVEESSILETVTAVAAGKPLSCPNHDGNVMDF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + NK PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLDAV---NKRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + NK PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLDAV---NKRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRTPGSNGEDSSILETVTAVAAGKPLSCPNHDGNVMEF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + NK PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLDAV---NKRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRSPGSSAEESSILETVTAVAAGKPLSCPNHDGNVMDF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + + N+ PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLD---AANRRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL + + TL CP+CR+
Sbjct: 16 IDKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSI 68
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR------QRRHIIP-----------KCSTHNSQEL-L 127
+P GVAAL +F + L+D++ R + I+ C H+ +
Sbjct: 69 LPEKGVAALQNNFFITNLMDVLQRTPGSNGEDPSILQTVTAVAAGKPLSCPNHDGNVMEF 128
Query: 128 FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPE 187
+C++C+T C +CT G + +EH +P +++ L + + NK PE
Sbjct: 129 YCQSCETAMCRECTEGEH-------AEHPTVPLKDVVEQHKASLQVQLDAV---NKRLPE 178
Query: 188 RKSNLR 193
S L+
Sbjct: 179 IDSALQ 184
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL +Q+ TL CP+CR+
Sbjct: 15 MDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL---TLSCPVCRQTSI 67
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR--------QRRHIIP-------KCSTHNSQEL-LFC 129
+P GV+AL +F ++ L++ M + + H + C H + + +C
Sbjct: 68 LPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPLSCPNHEGKTMEFYC 127
Query: 130 ETCDTVFCLQCTGG 143
E C+T C +C G
Sbjct: 128 EACETAMCGECRAG 141
>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1
SV=1
Length = 734
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL HTPK LPC HT C CL+++ G +RCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----HTPKTLPCLHTYCQDCLAQLDIG-----GQVRCPECREI 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMS 108
+ +P GVAA +F VN LLDL+
Sbjct: 63 VPVPAEGVAAFKTNFFVNGLLDLVK 87
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL PK LPC HT C CL+++A E LRCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----RVPKTLPCLHTYCQDCLAQLA-----EGSRLRCPECRES 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMS 108
+ +P GVAA +F VN LLDL+
Sbjct: 63 VPVPPAGVAAFKTNFFVNGLLDLVK 87
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL Q+ TL CP+CR+
Sbjct: 15 MDKQFLVCSICLDRY----RCPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQTSI 67
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR--------QRRHIIPK-------CSTHNSQEL-LFC 129
+P GV+AL +F ++ L++ M + + H + C H + + +C
Sbjct: 68 LPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSAVAGRPLSCPNHEGKTMEFYC 127
Query: 130 ETCDTVFCLQCTGG 143
E C+T C +C G
Sbjct: 128 EACETAMCGECRAG 141
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
++ FL C CL Y PK+LPC HT C CL Q+ TL CP+CR+
Sbjct: 15 MDKQFLVCSICLDRY----RCPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQTSI 67
Query: 86 IPRGGVAALPPSFLVNQLLDLMSR--------QRRHIIPK-------CSTHNSQEL-LFC 129
+P GV+AL +F ++ L++ M + + H + C H + + +C
Sbjct: 68 LPEQGVSALQNNFFISSLMEAMQQAPEGAHDPEDPHPLSAVAGRPLSCPNHEGKTMEFYC 127
Query: 130 ETCDTVFCLQCTGG 143
E C+T C +C G
Sbjct: 128 EACETAMCGECRAG 141
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + FL C CL PK LPC HT C CL+++A + G +RCP CRE
Sbjct: 12 EALSSDFLACKICLEQL----RAPKTLPCLHTYCQDCLAQLA-----DGGRVRCPECRET 62
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMS 108
+ +P GVA+ +F VN LLDL+
Sbjct: 63 VPVPPEGVASFKTNFFVNGLLDLVK 87
>sp|Q5ZMD4|TRI59_CHICK Tripartite motif-containing protein 59 OS=Gallus gallus GN=TRIM59
PE=2 SV=1
Length = 408
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT------LRCPICR 81
E LTC C +++ P++LPCSHT C CL + + + L+CP CR
Sbjct: 5 EEELTCSICYSLFED----PRVLPCSHTFCRSCLEGVIQLSSNFSIWRPLRVPLKCPNCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQEL-LFCETCDTVFCLQC 140
+ IP G +LP +F + +++ ++ + CS H Q L ++C + C C
Sbjct: 61 SIVEIPASGTESLPINFALKAIIEKYRQEDHSDVATCSEHYRQPLNVYCLLDKKLVCGHC 120
Query: 141 TGGSNHSSTSGDSEHT 156
H+ D H+
Sbjct: 121 LTIGKHNGHPIDDLHS 136
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E LTC CL Y PKLLPC HT C CL A + R L+CP CR + IP
Sbjct: 38 EQLLTCPICLDRY----KQPKLLPCQHTFCYPCLESCADTLHR---NLKCPECRAEHNIP 90
Query: 88 RGGVAALPPSFLVNQLLDL 106
GV A P++ + L++
Sbjct: 91 YDGVKAFQPNYTLTGFLEI 109
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRET----GTLRCPICREQ 83
E LTC C ++D P++LPCSH C CL + +R + +CP CR++
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLDGVLEENSRTMQWRPSSFKCPTCRKE 60
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSRQRRH-IIPKCSTHNSQEL-LFCETCDTVFCLQCT 141
P GV L ++L+ +++ ++ + +P C H+ Q L +FC T + C C
Sbjct: 61 --TPTMGVNGLQVNYLLKGIVEKYNKIKVSPKMPVCKEHSDQPLNIFCSTDLKLICGSCA 118
Query: 142 GGSNHS----STSGDS 153
H S+ GD+
Sbjct: 119 TTGEHKKHVFSSIGDA 134
>sp|Q9BYV6|TRI55_HUMAN Tripartite motif-containing protein 55 OS=Homo sapiens GN=TRIM55
PE=1 SV=2
Length = 548
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 18 TVSINYEDFN---------ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI---- 64
+ S+NY+ F+ E L C CL M+ +LPC H +C C S I
Sbjct: 2 SASLNYKSFSKEQQTMDNLEKQLICPICLEMFT---KPVVILPCQHNLCRKCASDIFQAS 58
Query: 65 -------AASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR-----QRR 112
+ G RCP CR ++ + R GV L + LV ++D+ + +++
Sbjct: 59 NPYLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKK 118
Query: 113 HIIPKCSTHNSQEL-LFCETCDTVFCLQC 140
P C H + + ++C C+ C C
Sbjct: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLC 147
>sp|Q5PQN5|TRI55_RAT Tripartite motif-containing protein 55 OS=Rattus norvegicus
GN=Trim55 PE=2 SV=1
Length = 545
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 18 TVSINYEDFN---------ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI---- 64
+ S+NY+ F+ E L C CL M+ +LPC H +C C S I
Sbjct: 2 STSLNYKSFSKEQQTMDNLEKQLICPICLEMFT---KPVVILPCQHNLCRKCASDIFQAS 58
Query: 65 -------AASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR-----QRR 112
+ G RCP CR ++ + R GV L + LV ++D+ + +++
Sbjct: 59 NPYLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKK 118
Query: 113 HIIPKCSTHNSQEL-LFCETCDTVFCLQC 140
P C H + + ++C C+ C C
Sbjct: 119 LDQPMCEEHEEERINIYCLNCEVPTCSLC 147
>sp|Q3UV31|RN223_MOUSE RING finger protein 223 OS=Mus musculus GN=Rnf223 PE=2 SV=2
Length = 285
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT-----RETGTLRCPICREQ 83
S L C C YD TPK L CSH CL CL+R+AA+Q RE + CP CR+
Sbjct: 77 SPLECSICFSGYDNIFKTPKELSCSHVFCLECLARLAAAQPAGRSGRE--AVPCPFCRQP 134
Query: 84 ITIPRGGVAAL 94
T+P G AL
Sbjct: 135 TTVPVAGAPAL 145
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----AASQTRETGT-LRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI A +++ E+ T +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLM-----------SRQRRHIIPKCSTHNSQELLFCE 130
IT+ + G+ L + + ++D S RR +T S E + C+
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSAEKVLCQ 120
Query: 131 TCD 133
CD
Sbjct: 121 FCD 123
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1
Length = 667
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ------TRETGTLRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI S +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLM-----------SRQRRHIIPKCSTHNSQELLFCE 130
IT+ + G+ L + + ++D S RR +T +S E + C+
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQ 120
Query: 131 TCD 133
CD
Sbjct: 121 FCD 123
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=2
Length = 680
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ------TRETGTLRCPICR 81
ES LTC CL +++ P LLPC+H++C +C RI S +CP CR
Sbjct: 5 ESELTCPICLELFED----PLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLM-----------SRQRRHIIPKCSTHNSQELLFCE 130
IT+ + G+ L + + ++D S RR +T +S E + C+
Sbjct: 61 HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQ 120
Query: 131 TCD 133
CD
Sbjct: 121 FCD 123
>sp|Q969Q1|TRI63_HUMAN E3 ubiquitin-protein ligase TRIM63 OS=Homo sapiens GN=TRIM63 PE=1
SV=1
Length = 353
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I +S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQEL-LFC 129
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +++ ++C
Sbjct: 75 CPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYC 134
Query: 130 ETCDTVFCLQCTGGSNHSS 148
TC+ C C H +
Sbjct: 135 LTCEVPTCSMCKVFGIHKA 153
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT--LRCPICREQIT 85
E LTC C C+++ P++LPCSH+ C CL I T +CP CR++
Sbjct: 5 EEDLTCPICCCLFED----PRVLPCSHSFCKKCLEGILDGNRSPTWRPPFKCPTCRKETV 60
Query: 86 IPRGGVAALPPSFLVNQLLDLMSRQRRHIIPK---CSTHNSQEL-LFCETCDTVFCLQCT 141
G+A+L ++ + +++ +R R ++P+ C H+ Q L +FC T + C C
Sbjct: 61 --HNGIASLQVNYSLRGIVEKYNRIR--VMPRMSQCRVHSGQPLNIFCATDLKLICGFCA 116
Query: 142 GGSNHS 147
+H
Sbjct: 117 TTGDHK 122
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT------LRCPICR 81
E LTC C +++ P++LPCSHT C +CL + + L+CP CR
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCR 60
Query: 82 EQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQEL-LFCETCDTVFCLQC 140
I I G+ +LP +F + +++ ++ + C H Q L ++C + C C
Sbjct: 61 SIIEIASTGIESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHC 120
Query: 141 -TGGSNHSSTSGD 152
T G +H D
Sbjct: 121 LTIGQHHGHPIDD 133
>sp|E7ERA6|RN223_HUMAN RING finger protein 223 OS=Homo sapiens GN=RNF223 PE=2 SV=1
Length = 249
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT--RETG-TLRCPICREQIT 85
S L C C YD TPK L C+H CL CL+R+AA+Q R G + CP CR+
Sbjct: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
Query: 86 IPRGGVAAL 94
+P G AL
Sbjct: 107 VPPAGAPAL 115
>sp|Q91Z63|TRI63_RAT E3 ubiquitin-protein ligase TRIM63 OS=Rattus norvegicus GN=Trim63
PE=2 SV=1
Length = 351
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQEL-LFC 129
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +++ ++C
Sbjct: 75 CPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYC 134
Query: 130 ETCDTVFCLQCTGGSNHSS 148
TC+ C C H +
Sbjct: 135 LTCEVPTCSLCKVFGAHQA 153
>sp|Q38HM4|TRI63_MOUSE E3 ubiquitin-protein ligase TRIM63 OS=Mus musculus GN=Trim63 PE=1
SV=1
Length = 350
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-----------AASQTRETGTLR 76
E L C CL M+ +LPC H +C C + I S + G R
Sbjct: 18 EKQLICPICLEMFT---KPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFR 74
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ------RRHIIPKCSTHNSQEL-LFC 129
CP CR ++ + R GV L + LV ++D+ ++ ++ P C H +++ ++C
Sbjct: 75 CPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYC 134
Query: 130 ETCDTVFCLQCTGGSNHSS 148
TC+ C C H +
Sbjct: 135 LTCEVPTCSLCKVFGAHQA 153
>sp|Q3TL54|TR43A_MOUSE Tripartite motif-containing protein 43A OS=Mus musculus GN=Trim43a
PE=2 SV=1
Length = 445
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 23/203 (11%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
S N +D E LTC C ++ P L C H C CL SQ CP+
Sbjct: 3 SDNLQDPQEETLTCSICQSIF----MNPVYLRCGHKFCEACL---LLSQEDIKFPAYCPM 55
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMS--RQRRHIIPKCSTHNSQELLFCETCDTVFC 137
C + +L + + LM + H KC TH +++++FC+ + C
Sbjct: 56 CMQPFNQEYINDISLKKQVSIVRKKRLMKYLNSKEH---KCVTHKAKKMIFCDKSKILLC 112
Query: 138 LQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANEC-----VSKNKVCPERKSNL 192
C+ HS HT +A++ E LL + + +N V ER++ L
Sbjct: 113 HLCSDSQEHSG------HTHCSIDVAVQEKMEELLKHMDSLWRRLKIQQNYVEIERRTTL 166
Query: 193 RPSAHKADAYVRRRGAHTQTPPL 215
+ K V +R Q PPL
Sbjct: 167 WWLSVKLREEVIKRVYGKQCPPL 189
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT------LRCP 78
+F E LTC C +++ P++LPCSHT C +CL I + L+CP
Sbjct: 3 NFEEE-LTCPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCP 57
Query: 79 ICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQEL-LFCETCDTVFC 137
CR I G+ +LP +F + +++ ++ I C H Q L ++C + C
Sbjct: 58 NCRSITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVC 117
Query: 138 LQC-TGGSNHSSTSGD 152
C T G +H D
Sbjct: 118 GHCLTIGQHHGHPIDD 133
>sp|Q58D15|TRI54_BOVIN Tripartite motif-containing protein 54 OS=Bos taurus GN=TRIM54 PE=2
SV=1
Length = 366
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRSSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLD---------LMSRQRRHIIPKCSTHNSQ 124
RCP CR ++ + R GV L + LV ++D L S+ +H++ C H +
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLM--CEEHEDE 132
Query: 125 EL-LFCETCDTVFCLQCTGGSNHSS 148
++ ++C +C+ C C H
Sbjct: 133 KINIYCLSCEVPTCSLCKVFGAHKD 157
>sp|Q9BYV2|TRI54_HUMAN Tripartite motif-containing protein 54 OS=Homo sapiens GN=TRIM54
PE=1 SV=3
Length = 358
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLD---------LMSRQRRHIIPKCSTHNSQ 124
RCP CR ++ + R GV L + LV ++D L S+ +H++ C H +
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLM--CEEHEEE 132
Query: 125 EL-LFCETCDTVFCLQCTGGSNHSS 148
++ ++C +C+ C C H
Sbjct: 133 KINIYCLSCEVPTCSLCKVFGAHKD 157
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D T K+LPC HT C CL I S+ G LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---TAKVLPCQHTFCRRCLLGIVGSR----GELRCPECR---TLVES 58
Query: 90 GVAALPPSFLVNQLLD-LMSRQRR 112
GV LP + L+ +LLD + R RR
Sbjct: 59 GVDELPSNILLVRLLDGIKQRPRR 82
>sp|Q5REJ9|TRI54_PONAB Tripartite motif-containing protein 54 OS=Pongo abelii GN=TRIM54
PE=2 SV=1
Length = 358
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLD---------LMSRQRRHIIPKCSTHNSQ 124
RCP CR ++ + R GV L + LV ++D L S+ +H++ C H +
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLM--CEEHEEE 132
Query: 125 EL-LFCETCDTVFCLQCTGGSNHSS 148
++ ++C +C+ C C H
Sbjct: 133 KINIYCLSCEVPTCSLCKVFGAHKD 157
>sp|Q5XIH6|TRI54_RAT Tripartite motif-containing protein 54 OS=Rattus norvegicus
GN=Trim54 PE=2 SV=1
Length = 364
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLD---------LMSRQRRHIIPKCSTHNSQ 124
RCP CR ++ + R GV L + LV ++D L S+ +H++ C H +
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLM--CEEHEDE 132
Query: 125 EL-LFCETCDTVFCLQCTGGSNHSS 148
++ ++C +C+ C C H
Sbjct: 133 KINIYCLSCEVPTCSLCKVFGAHKD 157
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1
PE=2 SV=1
Length = 861
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D + K+LPC HT C CL I +S+ LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---SAKVLPCQHTFCKRCLLGIVSSRNE----LRCPECR---TLVEC 58
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLFCETCDTVFC 137
GV LP + L+ +LLD + ++ R S NS +L + T C
Sbjct: 59 GVDELPSNILLVRLLDGIKQRPRKAGVGGSAGNSTNVLRAQGSLTTNC 106
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C CL D + K+LPC HT C CL I +S+ LRCP CR T+
Sbjct: 9 LLECPVCLERLDA---SAKVLPCQHTFCKRCLLGIVSSRKE----LRCPECR---TLVEC 58
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSST 149
GV LP + L+ +LLD + ++ R S NS L + T GG N +
Sbjct: 59 GVDELPSNILLVRLLDGIRQRPRKAGDGGSAGNSTNALRAQGSVTT-----NGGLNDAQN 113
Query: 150 SGDSEHTIIPFSIAIKRMSEILLYKA 175
+ + I S ++ + ++ KA
Sbjct: 114 TQSGQQRIQARSPPVRGVPQLPCAKA 139
>sp|Q9ERP3|TRI54_MOUSE Tripartite motif-containing protein 54 OS=Mus musculus GN=Trim54
PE=1 SV=1
Length = 366
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-----QTRET------G 73
D E L C CL M+ +LPC H +C C + + + Q+R + G
Sbjct: 18 DNLEKQLICPICLEMFS---KPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGG 74
Query: 74 TLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQ---------RRHIIPKCSTHNSQ 124
RCP CR ++ + R GV L + LV ++D+ ++ +H++ C H +
Sbjct: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHAKAEQHLM--CEEHEDE 132
Query: 125 EL-LFCETCDTVFCLQCTGGSNHSS 148
++ ++C +C+ C C H
Sbjct: 133 KINIYCLSCEVPTCSLCKVFGAHKD 157
>sp|D3ZBM4|RN182_RAT E3 ubiquitin-protein ligase RNF182 OS=Rattus norvegicus GN=Rnf182
PE=3 SV=1
Length = 247
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLF 128
V++LP N L++L + KC N ELL
Sbjct: 78 VSSLPDD--NNILVNLTCGSKGK---KCLPENPTELLL 110
>sp|Q8N6D2|RN182_HUMAN E3 ubiquitin-protein ligase RNF182 OS=Homo sapiens GN=RNF182 PE=1
SV=1
Length = 247
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLF 128
V++LP N L++L + KC N ELL
Sbjct: 78 VSSLPDDN--NILVNLTCGGKGK---KCLPENPTELLL 110
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 35/158 (22%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
DF E LTC C+ ++ P ++ C H C C+ ++ Q+ + CP C+E I
Sbjct: 139 DFAEE-LTCPLCVELF----KDPVMVACGHNFCRSCIDKVWEGQS----SFACPECKESI 189
Query: 85 TIPRGGVAALPPSFLVNQLLDLMSRQ-----------RRHIIPKCSTHNSQELLFCETCD 133
T + + +N++L ++++ + + KCS H+ + L+C+
Sbjct: 190 TDRK---------YTINRVLANLAKKAACTPVTPVEKKTRPLEKCSEHDERLKLYCKDDG 240
Query: 134 TVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEIL 171
T+ C+ C H+S H +P AI E L
Sbjct: 241 TLGCVICRDSLKHAS------HNFLPILDAIGVYREEL 272
>sp|Q8C432|RN182_MOUSE E3 ubiquitin-protein ligase RNF182 OS=Mus musculus GN=Rnf182 PE=2
SV=1
Length = 247
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDDE 77
Query: 91 VAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLF 128
V++LP N L++L + KC N ELL
Sbjct: 78 VSSLPDDN--NILVNLTCGGKGK---KCLPENPTELLL 110
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 24 EDFNES----FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
ED +ES L C CL D T K+LPC HT C CL I S+ LRCP
Sbjct: 44 EDMDESSLLDLLECSVCLERLD---TTAKVLPCQHTFCRRCLESIVCSRHE----LRCPE 96
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSRQR 111
CR + GV LP + L+ +LLD + RQR
Sbjct: 97 CRILVGC---GVDELPANILLVRLLDGI-RQR 124
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 24 EDFNES----FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
ED +ES L C CL D T K+LPC HT C CL I S+ LRCP
Sbjct: 39 EDMDESSLLDLLECSVCLERLD---TTAKVLPCQHTFCRRCLESIVCSRHE----LRCPE 91
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSRQR 111
CR + GV LP + L+ +LLD + RQR
Sbjct: 92 CRILVGC---GVDELPANILLVRLLDGI-RQR 119
>sp|Q6INB3|RN182_XENLA E3 ubiquitin-protein ligase RNF182 OS=Xenopus laevis GN=rnf182 PE=2
SV=1
Length = 246
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
+ N L C C Y+ + PK+L C H VC CL ++ + CP CR +
Sbjct: 14 NLNSDELECKICYNRYNLRQRKPKVLGCCHRVCAKCLYKLVDCGESPQCVIVCPFCRFET 73
Query: 85 TIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLF 128
+P V++LP N LL+L R KC N ELL
Sbjct: 74 RMPEDEVSSLPDDN--NILLNLACGGRG----KCVGDNPTELLL 111
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 35/158 (22%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
DF E LTC C+ ++ P ++ C H C C+ + Q+ + CP CRE I
Sbjct: 138 DFAEE-LTCPLCVELF----KDPVMVACGHNFCRSCIDKAWEGQS----SFACPECRESI 188
Query: 85 TIPRGGVAALPPSFLVNQLLDLMSRQ-----------RRHIIPKCSTHNSQELLFCETCD 133
T + + +N++L ++++ + + KCS H+ + L+C+
Sbjct: 189 TDRK---------YTINRVLANLAKKAACTPVTPVEKKTRPLEKCSEHDERLKLYCKDDG 239
Query: 134 TVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEIL 171
T+ C+ C H+S H +P A+ E L
Sbjct: 240 TLSCVICRDSLKHAS------HNFLPILDAVGVYREEL 271
>sp|Q68EV7|R152B_XENLA E3 ubiquitin-protein ligase rnf152-B OS=Xenopus laevis GN=rnf152-b
PE=2 SV=1
Length = 203
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ ASQ LRCP CR
Sbjct: 6 QDSLLECQICFNYY-SPRRRPKLLDCKHTCCSVCLQQMRASQK----DLRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLD 105
GV LPP + V++L D
Sbjct: 56 ---GVTKLPPGYSVSELPD 71
>sp|P86448|TR43B_MOUSE Tripartite motif-containing protein 43B OS=Mus musculus GN=Trim43b
PE=2 SV=1
Length = 445
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 26/205 (12%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
S N +D E LTC C G P L C H C CL Q CP+
Sbjct: 3 SDNLQDPQEETLTCSIC----QGIFMNPVYLKCGHKFCEACL---LLFQEDIKFPAYCPM 55
Query: 80 CREQITIPRGGVAALPPSFLV---NQLLDLMSRQRRHIIPKCSTHNSQELLFCETCDTVF 136
C + +L + +L++ ++ + KC TH +++++FC+ +
Sbjct: 56 CMQPFNQEYINDISLKKQVSIVRKKRLMEYLNSEEH----KCVTHKAKKMIFCDKSKILL 111
Query: 137 CLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANEC-----VSKNKVCPERKSN 191
C C+ HS HT +A++ E LL + + +N V ER++
Sbjct: 112 CHLCSDSQEHSG------HTHCSIDVAVQEKMEELLKHMDSLWRRLKIQQNYVEKERRTT 165
Query: 192 LRP-SAHKADAYVRRRGAHTQTPPL 215
L + K V +R Q PPL
Sbjct: 166 LWWLKSMKLREEVIKRVYGKQCPPL 190
>sp|P36407|TRI23_RAT E3 ubiquitin-protein ligase TRIM23 OS=Rattus norvegicus GN=Trim23
PE=2 SV=2
Length = 573
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 29 SFLTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
L CG C ++ G+ P+LL C HTVC CL+R+ +RCP R+ +
Sbjct: 27 KVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGR----AIRCPFDRQVTDLG 82
Query: 88 RGGVAALPPSFLVNQLLDLMSR-QRRHI----------------IPKCSTHNSQEL-LFC 129
GV L +F LL+L+ R Q HI I +C + ++C
Sbjct: 83 DSGVWGLKKNF---ALLELLERLQNGHIGQYGAAEEALGISGESIIRCDEDEAHVASVYC 139
Query: 130 ETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFS 161
C T C +C+ ++ ST ++H +P +
Sbjct: 140 TVCATHLCSECSQVTH--STKTLAKHRRVPLA 169
>sp|D2H788|RN182_AILME E3 ubiquitin-protein ligase RNF182 OS=Ailuropoda melanoleuca
GN=RNF182 PE=3 SV=1
Length = 247
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
L C C Y+ + PK+L C H VC CL +I G + CP CR + +P
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDEE 77
Query: 91 VAALPP--SFLVN 101
V++LP + LVN
Sbjct: 78 VSSLPDDSNILVN 90
>sp|Q8N8N0|RN152_HUMAN E3 ubiquitin-protein ligase RNF152 OS=Homo sapiens GN=RNF152 PE=1
SV=1
Length = 203
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+S L C C Y PKLL C HT C CL ++ SQ +RCP CR
Sbjct: 6 QDSLLECQICFNYYSP-RRRPKLLDCKHTCCSVCLQQMRTSQK----DVRCPWCR----- 55
Query: 87 PRGGVAALPPSFLVNQLLD 105
GV LPP F V+QL D
Sbjct: 56 ---GVTKLPPGFSVSQLPD 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,017,737
Number of Sequences: 539616
Number of extensions: 3784661
Number of successful extensions: 8959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 8517
Number of HSP's gapped (non-prelim): 517
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)