Query psy11858
Match_columns 267
No_of_seqs 182 out of 2110
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:42:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4367|consensus 99.7 5.5E-17 1.2E-21 144.5 8.9 159 28-196 2-299 (699)
2 KOG2177|consensus 99.6 2.8E-15 6.1E-20 132.3 12.0 123 28-173 11-138 (386)
3 PF15227 zf-C3HC4_4: zinc fing 99.4 1.7E-13 3.6E-18 85.6 1.2 42 33-80 1-42 (42)
4 PF13445 zf-RING_UBOX: RING-ty 99.0 9.7E-11 2.1E-15 73.1 1.6 43 33-78 1-43 (43)
5 KOG4185|consensus 99.0 1.4E-09 3E-14 96.7 9.1 132 30-172 3-148 (296)
6 smart00504 Ubox Modified RING 99.0 3E-10 6.6E-15 77.2 3.4 61 30-105 1-61 (63)
7 TIGR00599 rad18 DNA repair pro 99.0 5.5E-10 1.2E-14 101.7 5.6 71 24-110 21-91 (397)
8 PLN03208 E3 ubiquitin-protein 99.0 7.9E-10 1.7E-14 90.5 4.9 52 30-85 18-79 (193)
9 KOG0287|consensus 98.9 1.3E-09 2.9E-14 95.0 3.3 65 30-109 23-87 (442)
10 PF00097 zf-C3HC4: Zinc finger 98.8 1.1E-09 2.3E-14 68.0 1.7 40 33-80 1-41 (41)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.2E-09 2.7E-14 67.0 1.4 38 33-80 1-39 (39)
12 PF14634 zf-RING_5: zinc-RING 98.8 4.3E-09 9.3E-14 66.4 3.5 44 32-82 1-44 (44)
13 PF04564 U-box: U-box domain; 98.8 3E-09 6.5E-14 74.7 2.9 68 29-110 3-70 (73)
14 PF14835 zf-RING_6: zf-RING of 98.8 1.5E-09 3.3E-14 72.4 0.6 59 29-104 6-65 (65)
15 PF13639 zf-RING_2: Ring finge 98.7 3.1E-09 6.7E-14 67.0 0.2 43 32-81 2-44 (44)
16 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.7E-09 1.7E-13 67.1 1.4 46 30-85 2-48 (50)
17 PHA02926 zinc finger-like prot 98.6 4E-08 8.7E-13 81.6 4.6 57 29-85 169-230 (242)
18 cd00162 RING RING-finger (Real 98.5 5.8E-08 1.3E-12 60.6 2.9 43 32-83 1-44 (45)
19 KOG1814|consensus 98.5 1.6E-07 3.5E-12 84.3 5.7 122 24-147 178-313 (445)
20 smart00184 RING Ring finger. E 98.5 1.6E-07 3.4E-12 56.6 3.4 39 33-80 1-39 (39)
21 KOG0320|consensus 98.5 1.6E-07 3.5E-12 75.3 4.0 52 26-85 127-178 (187)
22 PHA02929 N1R/p28-like protein; 98.4 1.2E-07 2.7E-12 80.9 3.3 50 30-85 174-227 (238)
23 COG5432 RAD18 RING-finger-cont 98.4 1.6E-07 3.4E-12 80.6 3.6 65 30-109 25-89 (391)
24 KOG0823|consensus 98.4 2.8E-07 6.1E-12 77.1 3.8 52 27-85 44-95 (230)
25 KOG0317|consensus 98.2 1E-06 2.2E-11 75.9 3.2 52 24-85 233-284 (293)
26 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.7E-11 76.1 4.5 48 30-86 3-55 (309)
27 PF00643 zf-B_box: B-box zinc 98.1 1.3E-06 2.9E-11 54.3 1.3 39 115-160 3-42 (42)
28 KOG2164|consensus 97.9 3.4E-06 7.3E-11 78.0 1.8 52 30-86 186-237 (513)
29 KOG2660|consensus 97.9 7.1E-06 1.5E-10 72.0 3.2 72 24-107 10-82 (331)
30 cd00021 BBOX B-Box-type zinc f 97.9 7.3E-06 1.6E-10 49.9 1.7 38 116-160 1-39 (39)
31 KOG0978|consensus 97.9 5.2E-06 1.1E-10 80.1 1.4 49 29-86 642-690 (698)
32 COG5152 Uncharacterized conser 97.8 1.4E-05 3.1E-10 65.2 3.2 53 20-85 189-241 (259)
33 COG5574 PEX10 RING-finger-cont 97.7 1.8E-05 3.9E-10 67.5 2.5 49 30-86 215-263 (271)
34 smart00336 BBOX B-Box-type zin 97.7 2.3E-05 5E-10 48.4 2.1 39 115-160 3-42 (42)
35 PF12861 zf-Apc11: Anaphase-pr 97.7 5.8E-05 1.3E-09 53.8 4.3 54 30-86 21-83 (85)
36 PF12678 zf-rbx1: RING-H2 zinc 97.7 1.5E-05 3.3E-10 55.8 1.2 45 31-81 20-73 (73)
37 KOG0311|consensus 97.6 1.5E-05 3.2E-10 70.6 0.8 53 24-86 38-91 (381)
38 KOG0824|consensus 97.6 2.9E-05 6.4E-10 67.3 1.9 47 30-85 7-53 (324)
39 KOG2879|consensus 97.5 6E-05 1.3E-09 64.6 2.3 49 29-85 238-287 (298)
40 KOG3161|consensus 97.5 6.2E-05 1.3E-09 71.3 2.4 69 30-107 11-79 (861)
41 KOG4159|consensus 97.4 5.9E-05 1.3E-09 69.1 1.9 48 28-85 82-129 (398)
42 KOG4628|consensus 97.4 7.4E-05 1.6E-09 66.9 2.2 49 31-85 230-278 (348)
43 COG5243 HRD1 HRD ubiquitin lig 97.4 0.00011 2.4E-09 65.4 3.1 58 23-86 280-346 (491)
44 KOG0802|consensus 97.3 0.00011 2.4E-09 70.7 2.4 53 26-84 287-340 (543)
45 COG5222 Uncharacterized conser 97.3 0.0003 6.5E-09 61.0 4.5 66 30-108 274-340 (427)
46 KOG1002|consensus 97.3 0.00015 3.2E-09 67.4 2.6 60 22-86 528-587 (791)
47 KOG1812|consensus 97.1 0.00056 1.2E-08 63.0 4.1 116 30-147 146-278 (384)
48 KOG1813|consensus 97.0 0.00024 5.2E-09 61.6 1.1 46 30-85 241-286 (313)
49 PF11793 FANCL_C: FANCL C-term 96.8 0.00055 1.2E-08 47.4 1.4 58 30-87 2-68 (70)
50 PF11789 zf-Nse: Zinc-finger o 96.8 0.00038 8.3E-09 46.1 0.4 42 30-79 11-53 (57)
51 COG5540 RING-finger-containing 96.6 0.0012 2.7E-08 57.5 2.4 50 30-85 323-372 (374)
52 KOG1039|consensus 96.6 0.0014 3E-08 59.1 2.5 54 29-86 160-222 (344)
53 KOG1785|consensus 96.5 0.0014 3.1E-08 59.1 1.8 48 31-86 370-417 (563)
54 KOG0297|consensus 96.4 0.0024 5.1E-08 59.1 2.8 48 29-86 20-68 (391)
55 KOG0825|consensus 96.2 0.0011 2.4E-08 64.4 -0.2 46 30-85 123-171 (1134)
56 KOG0804|consensus 96.2 0.0019 4.1E-08 59.2 1.2 55 22-85 168-222 (493)
57 KOG4172|consensus 96.1 0.0026 5.6E-08 41.1 1.1 46 31-85 8-54 (62)
58 PF14447 Prok-RING_4: Prokaryo 96.0 0.002 4.4E-08 41.9 0.3 45 30-86 7-51 (55)
59 KOG1493|consensus 96.0 0.0028 6.2E-08 43.8 0.9 52 32-86 22-82 (84)
60 KOG4692|consensus 95.9 0.005 1.1E-07 54.8 2.3 59 15-85 409-467 (489)
61 PF05290 Baculo_IE-1: Baculovi 95.8 0.012 2.5E-07 45.4 3.8 50 30-86 80-133 (140)
62 KOG1734|consensus 95.8 0.002 4.3E-08 55.3 -0.7 53 30-86 224-282 (328)
63 KOG1645|consensus 95.6 0.0075 1.6E-07 54.7 2.4 52 30-85 4-56 (463)
64 smart00744 RINGv The RING-vari 95.5 0.025 5.4E-07 36.2 4.0 44 32-81 1-49 (49)
65 KOG3800|consensus 95.4 0.014 3.1E-07 50.7 3.3 46 32-86 2-52 (300)
66 PF14570 zf-RING_4: RING/Ubox 95.4 0.015 3.3E-07 36.9 2.5 47 33-84 1-47 (48)
67 KOG4739|consensus 95.4 0.078 1.7E-06 45.1 7.6 46 30-86 3-49 (233)
68 KOG1941|consensus 95.1 0.017 3.6E-07 52.2 2.7 51 29-83 364-414 (518)
69 KOG2817|consensus 95.0 0.024 5.3E-07 51.4 3.6 59 24-86 328-386 (394)
70 KOG4265|consensus 94.9 0.017 3.8E-07 51.6 2.4 48 28-85 288-336 (349)
71 KOG0827|consensus 94.7 0.022 4.8E-07 51.4 2.6 47 31-81 5-52 (465)
72 KOG1815|consensus 94.7 0.054 1.2E-06 51.0 5.4 64 30-96 70-135 (444)
73 KOG4275|consensus 94.2 0.0063 1.4E-07 52.9 -2.0 42 30-85 300-342 (350)
74 PF04641 Rtf2: Rtf2 RING-finge 94.2 0.048 1E-06 47.6 3.4 52 27-85 110-161 (260)
75 KOG3002|consensus 94.1 0.028 6.1E-07 49.9 1.9 60 26-107 44-105 (299)
76 COG5194 APC11 Component of SCF 93.9 0.11 2.4E-06 36.4 4.0 50 31-86 21-82 (88)
77 KOG3039|consensus 93.2 0.053 1.1E-06 46.2 1.9 51 29-85 220-270 (303)
78 KOG1001|consensus 92.3 0.063 1.4E-06 53.0 1.4 46 31-85 455-500 (674)
79 COG5219 Uncharacterized conser 91.8 0.078 1.7E-06 53.1 1.4 52 30-85 1469-1523(1525)
80 PHA03096 p28-like protein; Pro 91.5 0.14 3.1E-06 45.2 2.6 53 31-83 179-235 (284)
81 KOG1940|consensus 91.3 0.14 3E-06 44.8 2.3 47 30-82 158-204 (276)
82 COG5109 Uncharacterized conser 91.3 0.18 4E-06 44.5 3.0 54 28-85 334-387 (396)
83 KOG4362|consensus 90.9 0.046 1E-06 53.2 -1.2 50 29-85 20-69 (684)
84 COG5236 Uncharacterized conser 90.8 0.26 5.7E-06 44.1 3.6 58 20-85 51-108 (493)
85 KOG4185|consensus 90.8 0.1 2.3E-06 46.2 1.1 49 30-83 207-265 (296)
86 KOG1571|consensus 90.8 0.069 1.5E-06 48.0 -0.1 43 30-85 305-347 (355)
87 KOG1428|consensus 90.5 0.55 1.2E-05 49.5 5.8 53 30-85 3486-3544(3738)
88 KOG0828|consensus 89.1 0.27 5.8E-06 46.0 2.3 55 26-85 567-634 (636)
89 COG5220 TFB3 Cdk activating ki 88.3 0.2 4.3E-06 42.6 0.9 49 30-85 10-64 (314)
90 KOG2932|consensus 87.9 0.19 4.2E-06 44.2 0.6 49 26-85 86-134 (389)
91 PF07800 DUF1644: Protein of u 86.8 0.67 1.5E-05 37.0 3.0 20 29-52 1-20 (162)
92 PF05605 zf-Di19: Drought indu 86.6 0.3 6.6E-06 31.7 0.8 39 30-83 2-40 (54)
93 KOG3579|consensus 85.5 0.39 8.4E-06 41.9 1.1 46 30-80 268-317 (352)
94 PF07191 zinc-ribbons_6: zinc- 83.0 0.047 1E-06 37.5 -4.4 42 30-86 1-42 (70)
95 PF14569 zf-UDP: Zinc-binding 82.6 2.5 5.4E-05 29.6 3.9 52 30-86 9-63 (80)
96 COG5175 MOT2 Transcriptional r 82.1 1.1 2.4E-05 40.1 2.5 49 32-85 16-64 (480)
97 COG3813 Uncharacterized protei 79.9 1.3 2.9E-05 30.4 1.8 47 31-85 6-52 (84)
98 PF02891 zf-MIZ: MIZ/SP-RING z 78.1 0.83 1.8E-05 29.2 0.4 48 30-83 2-50 (50)
99 cd00065 FYVE FYVE domain; Zinc 78.0 0.91 2E-05 29.5 0.6 34 31-64 3-36 (57)
100 PF05883 Baculo_RING: Baculovi 77.3 1.9 4E-05 33.6 2.2 36 30-66 26-67 (134)
101 KOG0298|consensus 77.2 1.1 2.3E-05 46.8 1.0 48 29-85 1152-1199(1394)
102 KOG2930|consensus 77.1 2.4 5.2E-05 31.3 2.5 29 51-85 80-108 (114)
103 PF06906 DUF1272: Protein of u 75.2 2.4 5.1E-05 27.7 1.9 47 31-85 6-52 (57)
104 PF10367 Vps39_2: Vacuolar sor 75.0 0.63 1.4E-05 34.3 -1.0 31 30-62 78-108 (109)
105 KOG2114|consensus 73.4 2.4 5.1E-05 42.5 2.3 48 23-85 835-883 (933)
106 KOG3970|consensus 73.3 5.7 0.00012 33.7 4.2 54 31-86 51-106 (299)
107 PF12906 RINGv: RING-variant d 71.2 3.7 7.9E-05 25.8 2.1 42 33-80 1-47 (47)
108 KOG1100|consensus 68.9 1.7 3.8E-05 36.6 0.3 39 33-85 161-200 (207)
109 smart00064 FYVE Protein presen 68.6 2.5 5.5E-05 28.5 1.0 35 30-64 10-44 (68)
110 KOG4571|consensus 66.3 20 0.00044 31.6 6.2 50 162-211 237-286 (294)
111 PF10083 DUF2321: Uncharacteri 66.1 5.5 0.00012 31.7 2.5 24 53-85 27-50 (158)
112 smart00502 BBC B-Box C-termina 65.3 3 6.6E-05 31.3 1.0 36 175-210 16-51 (127)
113 KOG3268|consensus 65.1 9.1 0.0002 31.3 3.6 38 50-87 188-230 (234)
114 KOG3113|consensus 64.0 5 0.00011 34.6 2.0 58 22-87 103-160 (293)
115 PHA02862 5L protein; Provision 63.7 7.6 0.00017 30.6 2.9 48 31-87 3-55 (156)
116 PF09538 FYDLN_acid: Protein o 63.3 3.5 7.5E-05 31.0 0.9 14 73-86 25-38 (108)
117 PF03854 zf-P11: P-11 zinc fin 63.2 1.8 3.8E-05 27.3 -0.6 31 49-85 15-46 (50)
118 PF01363 FYVE: FYVE zinc finge 62.1 1.3 2.9E-05 30.0 -1.4 33 30-62 9-41 (69)
119 KOG2807|consensus 60.2 1.5 3.1E-05 39.2 -1.8 21 126-147 345-365 (378)
120 PF06844 DUF1244: Protein of u 59.8 5.8 0.00013 26.8 1.4 13 55-67 11-23 (68)
121 PF14353 CpXC: CpXC protein 59.5 6.9 0.00015 30.0 2.0 43 30-86 1-50 (128)
122 PF08746 zf-RING-like: RING-li 59.0 5.9 0.00013 24.4 1.2 43 33-80 1-43 (43)
123 PF10272 Tmpp129: Putative tra 58.8 9.2 0.0002 35.0 3.0 35 52-86 311-352 (358)
124 PF07889 DUF1664: Protein of u 58.4 52 0.0011 25.4 6.6 50 161-210 56-105 (126)
125 KOG0825|consensus 58.1 6.6 0.00014 39.2 2.0 55 30-84 96-153 (1134)
126 KOG2264|consensus 57.8 71 0.0015 31.1 8.6 71 177-264 97-168 (907)
127 smart00396 ZnF_UBR1 Putative z 57.7 12 0.00025 25.8 2.7 28 126-159 13-44 (71)
128 KOG0826|consensus 56.7 6.6 0.00014 35.2 1.6 50 26-85 296-346 (357)
129 PF02207 zf-UBR: Putative zinc 56.7 3.2 7E-05 28.5 -0.2 31 124-160 11-45 (71)
130 PLN02189 cellulose synthase 55.0 6.3 0.00014 40.7 1.4 51 31-86 35-88 (1040)
131 PF14446 Prok-RING_1: Prokaryo 54.6 9.1 0.0002 24.9 1.6 12 30-41 5-16 (54)
132 smart00035 CLa CLUSTERIN alpha 54.0 62 0.0013 27.3 6.8 17 127-143 73-89 (216)
133 PF13719 zinc_ribbon_5: zinc-r 53.9 15 0.00033 21.7 2.4 11 31-41 3-13 (37)
134 PF10571 UPF0547: Uncharacteri 53.6 4.6 0.0001 22.1 0.1 8 33-40 3-10 (26)
135 TIGR02338 gimC_beta prefoldin, 53.5 67 0.0014 23.9 6.5 44 164-207 65-108 (110)
136 KOG4445|consensus 53.1 7.5 0.00016 34.4 1.3 59 30-91 115-192 (368)
137 PHA02825 LAP/PHD finger-like p 52.6 25 0.00054 28.3 4.1 50 29-87 7-61 (162)
138 KOG2231|consensus 52.6 11 0.00024 37.2 2.6 51 32-86 2-53 (669)
139 PF08946 Osmo_CC: Osmosensory 52.4 30 0.00065 21.6 3.5 35 166-200 5-39 (46)
140 KOG3053|consensus 51.3 27 0.00058 30.3 4.4 60 27-86 17-83 (293)
141 PF12999 PRKCSH-like: Glucosid 50.7 1.1E+02 0.0023 25.2 7.6 52 160-211 119-170 (176)
142 KOG3039|consensus 50.4 9.6 0.00021 32.8 1.5 34 28-65 41-74 (303)
143 KOG2034|consensus 49.8 10 0.00022 38.4 1.8 34 30-66 817-851 (911)
144 PF00170 bZIP_1: bZIP transcri 49.8 73 0.0016 21.0 6.8 47 162-208 15-61 (64)
145 KOG4367|consensus 49.3 30 0.00065 32.3 4.6 42 118-160 168-209 (699)
146 PF05377 FlaC_arch: Flagella a 48.0 77 0.0017 20.7 5.5 27 177-203 11-37 (55)
147 TIGR02300 FYDLN_acid conserved 47.8 9.3 0.0002 29.5 1.0 13 73-85 25-37 (129)
148 PLN02195 cellulose synthase A 47.8 15 0.00032 37.9 2.7 51 30-85 6-59 (977)
149 PRK09343 prefoldin subunit bet 47.5 94 0.002 23.6 6.6 45 165-209 70-114 (121)
150 PRK04023 DNA polymerase II lar 46.6 41 0.00088 35.0 5.4 50 117-172 640-695 (1121)
151 cd00632 Prefoldin_beta Prefold 46.5 95 0.0021 22.8 6.3 41 166-206 63-103 (105)
152 KOG1853|consensus 46.4 89 0.0019 27.2 6.7 9 257-265 208-216 (333)
153 KOG1729|consensus 46.3 3.3 7.2E-05 36.7 -1.9 57 29-85 167-225 (288)
154 PRK14714 DNA polymerase II lar 46.3 34 0.00074 36.4 5.0 50 117-172 681-741 (1337)
155 KOG1952|consensus 46.1 18 0.00039 36.5 2.9 59 25-85 186-247 (950)
156 PF15616 TerY-C: TerY-C metal 45.9 8.5 0.00018 29.9 0.5 42 30-87 77-118 (131)
157 PLN02436 cellulose synthase A 44.4 14 0.0003 38.5 1.9 51 31-86 37-90 (1094)
158 PLN02638 cellulose synthase A 44.2 16 0.00035 38.0 2.4 51 30-85 17-70 (1079)
159 PF02318 FYVE_2: FYVE-type zin 44.0 5.7 0.00012 30.2 -0.7 50 30-84 54-104 (118)
160 TIGR02098 MJ0042_CXXC MJ0042 f 43.1 27 0.00058 20.4 2.3 13 73-85 24-36 (38)
161 KOG3899|consensus 42.3 23 0.00049 31.3 2.6 35 52-86 325-366 (381)
162 PF13815 Dzip-like_N: Iguana/D 42.1 1.5E+02 0.0032 22.3 7.0 42 168-209 75-116 (118)
163 cd00350 rubredoxin_like Rubred 41.6 19 0.00041 20.6 1.5 11 31-41 2-12 (33)
164 cd02340 ZZ_NBR1_like Zinc fing 41.2 27 0.00058 21.4 2.2 27 127-159 15-42 (43)
165 COG5183 SSM4 Protein involved 41.1 29 0.00063 35.1 3.4 57 25-87 7-68 (1175)
166 smart00338 BRLZ basic region l 41.1 1E+02 0.0023 20.3 6.8 48 162-209 15-62 (65)
167 PF01920 Prefoldin_2: Prefoldi 40.1 1.2E+02 0.0025 21.9 6.0 41 167-207 63-103 (106)
168 PRK04023 DNA polymerase II lar 39.6 25 0.00055 36.4 2.8 70 4-85 599-674 (1121)
169 KOG2169|consensus 39.6 25 0.00053 34.9 2.8 66 30-107 306-373 (636)
170 PF13834 DUF4193: Domain of un 39.3 8 0.00017 28.4 -0.5 23 19-41 59-81 (99)
171 COG1382 GimC Prefoldin, chaper 38.6 1.8E+02 0.0039 22.3 6.7 44 165-208 69-112 (119)
172 PF05614 DUF782: Circovirus pr 38.5 2.1 4.6E-05 29.8 -3.4 43 223-265 51-98 (104)
173 PF02996 Prefoldin: Prefoldin 38.1 1.2E+02 0.0027 22.4 6.0 45 158-206 73-117 (120)
174 PF10235 Cript: Microtubule-as 37.8 10 0.00022 27.5 -0.1 37 30-85 44-80 (90)
175 PF10779 XhlA: Haemolysin XhlA 37.8 1.2E+02 0.0026 20.6 5.3 33 177-209 10-42 (71)
176 KOG1815|consensus 37.8 1.1E+02 0.0023 28.9 6.7 80 46-143 178-263 (444)
177 cd00890 Prefoldin Prefoldin is 37.4 1E+02 0.0022 23.1 5.5 39 168-206 89-127 (129)
178 PF10393 Matrilin_ccoil: Trime 37.1 1.1E+02 0.0023 19.3 4.9 33 162-194 12-44 (47)
179 COG3492 Uncharacterized protei 36.8 24 0.00052 25.5 1.6 15 54-68 41-55 (104)
180 PLN02400 cellulose synthase 36.6 21 0.00045 37.3 1.7 51 31-86 37-90 (1085)
181 PF12732 YtxH: YtxH-like prote 36.3 1.4E+02 0.003 20.3 6.2 41 165-205 25-66 (74)
182 PRK03947 prefoldin subunit alp 35.3 1E+02 0.0023 23.7 5.3 46 159-208 91-136 (140)
183 PLN02915 cellulose synthase A 34.7 24 0.00052 36.7 1.9 52 30-86 15-69 (1044)
184 cd00584 Prefoldin_alpha Prefol 34.5 1.8E+02 0.004 21.9 6.5 40 167-206 88-127 (129)
185 COG1730 GIM5 Predicted prefold 34.3 1.4E+02 0.003 23.7 5.8 48 158-209 90-137 (145)
186 PF13717 zinc_ribbon_4: zinc-r 33.6 19 0.00041 21.2 0.6 14 75-88 3-16 (36)
187 PRK14011 prefoldin subunit alp 33.2 1.2E+02 0.0026 23.9 5.3 46 165-210 87-132 (144)
188 PRK09039 hypothetical protein; 33.1 1.7E+02 0.0037 26.6 6.9 13 248-260 223-235 (343)
189 COG3883 Uncharacterized protei 32.7 2.8E+02 0.0062 24.3 7.9 40 172-211 58-97 (265)
190 PF01093 Clusterin: Clusterin; 31.9 1.9E+02 0.004 27.4 7.0 15 129-143 289-303 (436)
191 smart00531 TFIIE Transcription 31.8 46 0.001 26.2 2.8 38 29-86 98-135 (147)
192 cd07643 I-BAR_IMD_MIM Inverse 31.7 91 0.002 26.7 4.5 15 230-244 180-194 (231)
193 PF15030 DUF4527: Protein of u 31.6 71 0.0015 27.5 3.9 66 162-227 47-114 (277)
194 PF00096 zf-C2H2: Zinc finger, 30.9 13 0.00028 18.9 -0.4 11 31-41 1-11 (23)
195 PF07889 DUF1664: Protein of u 30.0 2.6E+02 0.0056 21.6 6.8 39 160-198 41-79 (126)
196 PF10234 Cluap1: Clusterin-ass 29.8 1.8E+02 0.0039 25.6 6.2 43 168-210 164-206 (267)
197 TIGR00293 prefoldin, archaeal 29.7 1.3E+02 0.0028 22.7 4.9 41 164-204 84-124 (126)
198 KOG2391|consensus 29.7 2.3E+02 0.005 25.8 6.9 18 191-208 250-267 (365)
199 PF10186 Atg14: UV radiation r 29.6 67 0.0015 27.9 3.7 81 117-210 1-93 (302)
200 PF10241 KxDL: Uncharacterized 29.6 2.1E+02 0.0046 20.4 6.9 36 175-210 45-80 (88)
201 PF03148 Tektin: Tektin family 29.6 1.9E+02 0.0041 26.7 6.8 13 241-253 300-312 (384)
202 PF13842 Tnp_zf-ribbon_2: DDE_ 29.4 25 0.00054 20.1 0.6 15 125-139 15-29 (32)
203 PF12773 DZR: Double zinc ribb 29.3 19 0.00042 22.4 0.1 29 54-85 12-40 (50)
204 PF04728 LPP: Lipoprotein leuc 29.0 1.7E+02 0.0037 19.2 5.6 41 170-210 7-47 (56)
205 PRK14559 putative protein seri 28.7 40 0.00087 33.5 2.3 11 75-85 2-12 (645)
206 smart00154 ZnF_AN1 AN1-like Zi 28.5 25 0.00054 21.1 0.5 12 47-58 12-24 (39)
207 PF07503 zf-HYPF: HypF finger; 28.0 40 0.00087 19.8 1.3 30 56-85 1-32 (35)
208 PF14193 DUF4315: Domain of un 27.9 2E+02 0.0042 20.5 5.1 30 170-199 5-34 (83)
209 PF04977 DivIC: Septum formati 27.9 1.9E+02 0.0042 19.4 5.5 42 170-211 28-69 (80)
210 PRK14890 putative Zn-ribbon RN 27.6 53 0.0012 21.8 2.0 11 72-82 46-56 (59)
211 cd00729 rubredoxin_SM Rubredox 27.4 44 0.00096 19.3 1.4 11 31-41 3-13 (34)
212 PF11932 DUF3450: Protein of u 27.0 2E+02 0.0043 24.7 6.1 14 231-244 124-137 (251)
213 PF10018 Med4: Vitamin-D-recep 26.9 3.2E+02 0.0069 22.4 7.1 23 237-259 87-115 (188)
214 PF15441 ARHGEF5_35: Rho guani 26.7 45 0.00097 31.3 2.0 24 242-265 451-476 (487)
215 COG5151 SSL1 RNA polymerase II 26.2 95 0.0021 27.9 3.8 18 126-143 388-405 (421)
216 PF07975 C1_4: TFIIH C1-like d 26.2 46 0.001 21.4 1.5 25 51-81 26-50 (51)
217 KOG3799|consensus 26.2 19 0.00041 28.0 -0.4 49 28-85 63-118 (169)
218 PF03833 PolC_DP2: DNA polymer 26.0 22 0.00049 36.0 0.0 51 116-172 668-724 (900)
219 PF13240 zinc_ribbon_2: zinc-r 25.9 42 0.00091 17.6 1.0 11 125-135 12-22 (23)
220 KOG1812|consensus 25.6 34 0.00073 31.7 1.1 38 30-67 306-344 (384)
221 smart00661 RPOL9 RNA polymeras 25.4 20 0.00042 22.5 -0.4 15 73-87 19-33 (52)
222 PF12874 zf-met: Zinc-finger o 25.4 19 0.0004 18.7 -0.4 11 31-41 1-11 (25)
223 KOG4451|consensus 25.2 45 0.00098 28.4 1.7 26 55-86 250-275 (286)
224 PF15290 Syntaphilin: Golgi-lo 25.2 2.1E+02 0.0045 25.3 5.7 30 181-210 125-154 (305)
225 TIGR02894 DNA_bind_RsfA transc 25.1 3.7E+02 0.008 21.7 7.0 22 183-204 128-149 (161)
226 COG4530 Uncharacterized protei 25.1 35 0.00075 25.6 0.8 26 31-56 10-36 (129)
227 PF13465 zf-H2C2_2: Zinc-finge 24.9 41 0.00089 17.9 0.9 15 71-85 11-25 (26)
228 PF08317 Spc7: Spc7 kinetochor 24.9 2.7E+02 0.0058 25.0 6.7 29 182-210 232-260 (325)
229 KOG2462|consensus 24.4 27 0.00058 30.6 0.2 54 30-86 161-227 (279)
230 KOG1701|consensus 24.4 31 0.00066 32.2 0.5 45 30-85 360-405 (468)
231 PF03119 DNA_ligase_ZBD: NAD-d 24.1 57 0.0012 18.0 1.4 14 76-89 1-14 (28)
232 PRK15396 murein lipoprotein; P 23.9 2.6E+02 0.0057 19.6 5.5 41 170-210 29-69 (78)
233 PHA02047 phage lambda Rz1-like 23.7 3E+02 0.0065 20.2 7.0 37 169-205 37-73 (101)
234 KOG2068|consensus 23.2 49 0.0011 29.8 1.6 50 30-85 249-298 (327)
235 PF13913 zf-C2HC_2: zinc-finge 23.0 35 0.00075 18.2 0.4 12 30-41 2-13 (25)
236 PRK14559 putative protein seri 23.0 68 0.0015 31.9 2.7 37 31-85 2-38 (645)
237 KOG3726|consensus 22.9 46 0.001 32.9 1.4 47 31-86 655-701 (717)
238 KOG0250|consensus 22.9 3E+02 0.0065 29.1 7.1 26 226-256 474-500 (1074)
239 PF10805 DUF2730: Protein of u 22.6 3E+02 0.0065 20.3 5.5 25 187-211 65-89 (106)
240 KOG2077|consensus 22.3 1.9E+02 0.004 28.4 5.2 20 162-181 346-365 (832)
241 smart00659 RPOLCX RNA polymera 22.2 67 0.0014 19.8 1.6 15 72-86 17-31 (44)
242 PF00446 GnRH: Gonadotropin-re 21.9 46 0.00099 13.9 0.5 7 253-259 3-9 (10)
243 PHA02107 hypothetical protein 21.6 3.4E+02 0.0074 22.0 5.9 40 171-210 175-214 (216)
244 KOG2077|consensus 21.5 2.4E+02 0.0052 27.7 5.8 46 165-210 321-366 (832)
245 KOG0971|consensus 21.2 1.6E+02 0.0035 30.4 4.8 57 154-210 1000-1056(1243)
246 PF05715 zf-piccolo: Piccolo Z 21.1 39 0.00084 22.4 0.4 29 30-62 2-30 (61)
247 PF03604 DNA_RNApol_7kD: DNA d 21.1 66 0.0014 18.5 1.3 12 73-84 16-27 (32)
248 COG3883 Uncharacterized protei 21.1 3.7E+02 0.0079 23.6 6.5 34 177-210 56-89 (265)
249 KOG0006|consensus 21.0 1E+02 0.0022 27.7 3.1 32 30-66 221-255 (446)
250 PF09297 zf-NADH-PPase: NADH p 20.9 9.3 0.0002 21.7 -2.3 28 54-83 3-30 (32)
251 KOG2391|consensus 20.7 4E+02 0.0086 24.3 6.7 21 185-205 258-278 (365)
252 KOG2789|consensus 20.7 31 0.00066 31.9 -0.2 32 30-65 74-107 (482)
253 PF07754 DUF1610: Domain of un 20.7 55 0.0012 17.5 0.8 11 72-82 14-24 (24)
254 PF13894 zf-C2H2_4: C2H2-type 20.4 50 0.0011 16.3 0.7 11 75-85 1-11 (24)
255 KOG2685|consensus 20.3 2.7E+02 0.0059 26.0 5.7 32 179-210 277-308 (421)
256 smart00734 ZnF_Rad18 Rad18-lik 20.3 50 0.0011 17.8 0.7 11 75-85 2-12 (26)
257 COG2835 Uncharacterized conser 20.3 60 0.0013 21.6 1.2 22 30-51 26-47 (60)
258 COG4306 Uncharacterized protei 20.3 70 0.0015 24.7 1.7 23 54-85 28-50 (160)
259 smart00249 PHD PHD zinc finger 20.3 49 0.0011 19.4 0.8 29 51-80 19-47 (47)
No 1
>KOG4367|consensus
Probab=99.69 E-value=5.5e-17 Score=144.54 Aligned_cols=159 Identities=23% Similarity=0.531 Sum_probs=129.5
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccC-------------------------------------
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR------------------------------------- 70 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~------------------------------------- 70 (267)
++++.|+||...|. +|++|+|+|+.|+.|......+...
T Consensus 2 eeelkc~vc~~f~~----epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~ 77 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR----EPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGS 77 (699)
T ss_pred cccccCceehhhcc----CceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCc
Confidence 45899999999998 9999999999999998754432110
Q ss_pred -----------------------------------------CCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHHh
Q psy11858 71 -----------------------------------------ETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR 109 (267)
Q Consensus 71 -----------------------------------------~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~~ 109 (267)
.+..+.||.|++++.....++..+|.|..+...++++..
T Consensus 78 ~~~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~ 157 (699)
T KOG4367|consen 78 YGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQ 157 (699)
T ss_pred cCCeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhh
Confidence 024789999999999999999999999999999998864
Q ss_pred hcc------------------------------------------------------------cCCCCCCCCCCccc-cc
Q psy11858 110 QRR------------------------------------------------------------HIIPKCSTHNSQEL-LF 128 (267)
Q Consensus 110 ~~~------------------------------------------------------------~~~~~C~~H~~~~~-~f 128 (267)
... .....|..|..... .|
T Consensus 158 s~~aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smy 237 (699)
T KOG4367|consen 158 SKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY 237 (699)
T ss_pred hhHHhhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEE
Confidence 310 01457999976655 99
Q ss_pred ccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHH
Q psy11858 129 CETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSA 196 (267)
Q Consensus 129 C~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~ 196 (267)
|.+|.+++|..|...+.|. +|.+..+..+..-++.+|...++.+.++.++..|.+-+++.+.
T Consensus 238 c~~ck~pvc~~clee~khs------~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~ 299 (699)
T KOG4367|consen 238 CVQCKMPVCYQCLEEGKHS------SHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMV 299 (699)
T ss_pred EEecCChHHHHHHHhhccc------chhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988899 9999999999998888888888777777777777666554433
No 2
>KOG2177|consensus
Probab=99.63 E-value=2.8e-15 Score=132.29 Aligned_cols=123 Identities=33% Similarity=0.722 Sum_probs=102.5
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
.+++.|+||++.|. +|++++|||+||..|+..+|. ..+.||.|+. .. ..+..|..+.++++.+
T Consensus 11 ~~~~~C~iC~~~~~----~p~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~-~~------~~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 11 QEELTCPICLEYFR----EPVLLPCGHNFCRACLTRSWE------GPLSCPVCRP-PS------RNLRPNVLLANLVERL 73 (386)
T ss_pred cccccChhhHHHhh----cCccccccchHhHHHHHHhcC------CCcCCcccCC-ch------hccCccHHHHHHHHHH
Confidence 35899999999999 999999999999999999987 4489999995 22 2566899999999888
Q ss_pred Hhhccc-----CCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHHH
Q psy11858 108 SRQRRH-----IIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLY 173 (267)
Q Consensus 108 ~~~~~~-----~~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~~ 173 (267)
...... ....|..|.+...+||..|...+|..|.....|. +|.+.++.+++..+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~c~~c~~~~~h~------~h~~~~~~~~~~~~~~~~~~ 138 (386)
T KOG2177|consen 74 RQLRLSRPLGSKEELCEKHGEELKLFCEEDEKLLCVLCRESGEHR------GHPVLPLEEAAQEYREKLLA 138 (386)
T ss_pred HhcCCcccccccchhhhhcCCcceEEecccccccCCCCCCccccc------CCccccHHHHHHHHHHHHHH
Confidence 754321 1228999998878999999999999999666799 99999999999998844433
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.36 E-value=1.7e-13 Score=85.57 Aligned_cols=42 Identities=36% Similarity=0.972 Sum_probs=32.4
Q ss_pred ecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
||||+++|. +|++|+|||+||..||.++|.... ...+.||.|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 899999999 999999999999999999998642 233899987
No 4
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.02 E-value=9.7e-11 Score=73.11 Aligned_cols=43 Identities=30% Similarity=0.912 Sum_probs=26.6
Q ss_pred ecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccC
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCP 78 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP 78 (267)
||||.+ |.++.+.|+.|+|||+||..|+.+++.... .+.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~--~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD--RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence 899999 886777799999999999999999998632 4678887
No 5
>KOG4185|consensus
Probab=99.01 E-value=1.4e-09 Score=96.73 Aligned_cols=132 Identities=30% Similarity=0.631 Sum_probs=100.7
Q ss_pred cceeccccccccc--CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDG--GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 30 ~l~C~iC~~~~~~--~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
.+.|.||...|.. +++.|+.|.|||++|..|+..... .+.+.||.|+..+......+..+..|+.+...+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~-----~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLG-----NSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhc-----CceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 5789999999984 699999999999999999998776 467888999999988888889999999998888776
Q ss_pred Hhhc------ccCCCCCCCCCCccc-c-----cccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 108 SRQR------RHIIPKCSTHNSQEL-L-----FCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 108 ~~~~------~~~~~~C~~H~~~~~-~-----fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
.... ....+.|..|..... . +|.-....+|..|...+-|. +|.-..+...+...++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~c~~~~~nl~~~vc~~~~~~~~~~~~c~t~~~~~~~~------~~~k~ll~~e~~~l~~~l~ 148 (296)
T KOG4185|consen 78 KKTTVEEKGEADSPPKCKEHPYNLAEFVCVEPDCSSKDKLMCRTCEEFGIHK------GHTKGLLQSEAAKLRESLE 148 (296)
T ss_pred hcccccccCcccCCcccccCcccccceeecCCCcchhhhhhhhhccchhhhh------hhHHHHHHHHHHHHHHHHH
Confidence 3211 124556999986654 2 36666788999998877688 7765444444444444444
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.99 E-value=3e-10 Score=77.24 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=52.3
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLD 105 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~ 105 (267)
++.||||++.+. +|+.++|||+||+.||..++.. ...||.|+..+.. .++.+|..+.+.++
T Consensus 1 ~~~Cpi~~~~~~----~Pv~~~~G~v~~~~~i~~~~~~------~~~cP~~~~~~~~-----~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMK----DPVILPSGQTYERRAIEKWLLS------HGTDPVTGQPLTH-----EDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCC----CCEECCCCCEEeHHHHHHHHHH------CCCCCCCcCCCCh-----hhceeCHHHHHHHH
Confidence 478999999999 9999999999999999999984 3589999998754 56777888877765
No 7
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=5.5e-10 Score=101.68 Aligned_cols=71 Identities=28% Similarity=0.684 Sum_probs=59.5
Q ss_pred cccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHH
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQL 103 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~ 103 (267)
..+. +.+.|+||++.|. +|++++|||+||..||..++.. ...||.|+..... ..+..|+.+.++
T Consensus 21 ~~Le-~~l~C~IC~d~~~----~PvitpCgH~FCs~CI~~~l~~------~~~CP~Cr~~~~~-----~~Lr~N~~L~~i 84 (397)
T TIGR00599 21 YPLD-TSLRCHICKDFFD----VPVLTSCSHTFCSLCIRRCLSN------QPKCPLCRAEDQE-----SKLRSNWLVSEI 84 (397)
T ss_pred cccc-cccCCCcCchhhh----CccCCCCCCchhHHHHHHHHhC------CCCCCCCCCcccc-----ccCccchHHHHH
Confidence 4454 4899999999998 9999999999999999998874 2479999998763 467889999999
Q ss_pred HHHHHhh
Q psy11858 104 LDLMSRQ 110 (267)
Q Consensus 104 v~~~~~~ 110 (267)
|+.+...
T Consensus 85 Ve~~~~~ 91 (397)
T TIGR00599 85 VESFKNL 91 (397)
T ss_pred HHHHHHh
Confidence 9877643
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.95 E-value=7.9e-10 Score=90.54 Aligned_cols=52 Identities=21% Similarity=0.689 Sum_probs=43.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccC----------CCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR----------ETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~----------~~~~~~CP~C~~~~~ 85 (267)
.+.|+||++.+. +|+.++|||.||..||..|+..... ......||.|+..+.
T Consensus 18 ~~~CpICld~~~----dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 18 DFDCNICLDQVR----DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCccCCCcCC----CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 699999999998 9999999999999999998764211 234679999999886
No 9
>KOG0287|consensus
Probab=98.86 E-value=1.3e-09 Score=95.02 Aligned_cols=65 Identities=26% Similarity=0.728 Sum_probs=57.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHHh
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR 109 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~~ 109 (267)
.|.|.||+++|+ .|++.||+|+||.-||..++.. ...||.|...+.- +.|..|+.+..+++.+..
T Consensus 23 lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~------~p~CP~C~~~~~E-----s~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 23 LLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSY------KPQCPTCCVTVTE-----SDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHhHHHHHhc----CceeccccchHHHHHHHHHhcc------CCCCCceecccch-----hhhhhhhHHHHHHHHHHH
Confidence 699999999999 9999999999999999999974 4789999998874 567888998888876653
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.85 E-value=1.1e-09 Score=67.99 Aligned_cols=40 Identities=40% Similarity=1.176 Sum_probs=36.3
Q ss_pred ecccccccccCCCCce-ecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTPK-LLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~-~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
|+||.+.+. +|. +++|||.||..|+.+++.. .+.+.||.|
T Consensus 1 C~iC~~~~~----~~~~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE----DPVILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS----SEEEETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCcccc----CCCEEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 899999999 898 8999999999999999996 466889987
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.82 E-value=1.2e-09 Score=67.01 Aligned_cols=38 Identities=32% Similarity=0.987 Sum_probs=32.0
Q ss_pred ecccccccccCCCCc-eecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P-~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
|+||++.+. +| +.++|||+||..|+.++.+. ...||.|
T Consensus 1 C~iC~~~~~----~~~~~~~CGH~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR----DPVVVTPCGHSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S----SEEEECTTSEEEEHHHHHHHHHC------TSB-TTT
T ss_pred CCCCCCccc----CcCEECCCCCchhHHHHHHHHHC------cCCCcCC
Confidence 899999998 89 67899999999999999883 3789987
No 12
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.81 E-value=4.3e-09 Score=66.37 Aligned_cols=44 Identities=36% Similarity=1.034 Sum_probs=36.8
Q ss_pred eecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCc
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~ 82 (267)
.|++|...| .+.+.|++++|||+||..|+.... .....||.|++
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc------CCCCCCcCCCC
Confidence 489999999 344579999999999999998876 25689999984
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.80 E-value=3e-09 Score=74.69 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=54.5
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
++|.|||++.++. +|+.+++||+|++.+|.+|+.. +...||.++..... ..+.+|..+...++.+.
T Consensus 3 ~~f~CpIt~~lM~----dPVi~~~G~tyer~~I~~~l~~-----~~~~~P~t~~~l~~-----~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMR----DPVILPSGHTYERSAIERWLEQ-----NGGTDPFTRQPLSE-----SDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-S----SEEEETTSEEEEHHHHHHHHCT-----TSSB-TTT-SB-SG-----GGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhh----CceeCCcCCEEcHHHHHHHHHc-----CCCCCCCCCCcCCc-----ccceECHHHHHHHHHHH
Confidence 4799999999999 9999999999999999999984 46899999988775 57899999999999876
Q ss_pred hh
Q psy11858 109 RQ 110 (267)
Q Consensus 109 ~~ 110 (267)
..
T Consensus 69 ~~ 70 (73)
T PF04564_consen 69 AE 70 (73)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 14
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.77 E-value=1.5e-09 Score=72.45 Aligned_cols=59 Identities=22% Similarity=0.642 Sum_probs=31.6
Q ss_pred ccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLL 104 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v 104 (267)
+.+.|++|.+++. +|+.+ .|.|.||..||..... ..||.|+.+.-. .++..|..+.+++
T Consensus 6 ~lLrCs~C~~~l~----~pv~l~~CeH~fCs~Ci~~~~~--------~~CPvC~~Paw~-----qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILK----EPVCLGGCEHIFCSSCIRDCIG--------SECPVCHTPAWI-----QDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--S----S-B---SSS--B-TTTGGGGTT--------TB-SSS--B-S------SS----HHHHHHH
T ss_pred HhcCCcHHHHHhc----CCceeccCccHHHHHHhHHhcC--------CCCCCcCChHHH-----HHHHhhhhhhccC
Confidence 3689999999998 99976 7999999999976443 359999999875 5777888877764
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.69 E-value=3.1e-09 Score=67.01 Aligned_cols=43 Identities=28% Similarity=0.734 Sum_probs=35.8
Q ss_pred eecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
.|+||.+.|.. ...++.++|||.||..|+.+|+... ..||.||
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRN------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHS------SB-TTTH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhC------CcCCccC
Confidence 59999999963 4577889999999999999999853 4999996
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.67 E-value=7.7e-09 Score=67.08 Aligned_cols=46 Identities=35% Similarity=0.764 Sum_probs=39.4
Q ss_pred cceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+..|.||++... +++++||||. ||..|+.+++. ....||.|++++.
T Consensus 2 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR----DVVLLPCGHLCFCEECAERLLK------RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS----SEEEETTCEEEEEHHHHHHHHH------TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC----ceEEeCCCChHHHHHHhHHhcc------cCCCCCcCChhhc
Confidence 578999999987 8999999999 99999999987 3478999999864
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=4e-08 Score=81.57 Aligned_cols=57 Identities=23% Similarity=0.551 Sum_probs=42.1
Q ss_pred ccceeccccccccc-----CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDG-----GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~-----~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+..|+||.+..-. ..+-++..+|+|+||..||..|.......+....||.||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 36899999977531 1223455689999999999999875322344678999999886
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.54 E-value=5.8e-08 Score=60.64 Aligned_cols=43 Identities=35% Similarity=0.918 Sum_probs=36.1
Q ss_pred eecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 32 TCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
.|+||.+.+. +|..++ |||.||..|+..++.. +...||.|+..
T Consensus 1 ~C~iC~~~~~----~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR----EPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh----CceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence 4899999996 777765 9999999999998874 45789999875
No 19
>KOG1814|consensus
Probab=98.50 E-value=1.6e-07 Score=84.27 Aligned_cols=122 Identities=30% Similarity=0.545 Sum_probs=74.0
Q ss_pred cccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhcc--CCCCccccCCCCceeecCCCCCCCCCchHH--
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT--RETGTLRCPICREQITIPRGGVAALPPSFL-- 99 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~--~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~-- 99 (267)
+.|...-+.|.||..... |...-+.+||+|.||++|+..+...+. ...+.+.||.++.....+++.|..+...-.
T Consensus 178 ~~F~~slf~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~a 256 (445)
T KOG1814|consen 178 EKFVNSLFDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFA 256 (445)
T ss_pred HHHHhhcccceeeehhhc-CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHH
Confidence 446666789999987775 455778899999999999999887643 234678999988776644332211111100
Q ss_pred ------HHHHHHHHHhhcccCCCCCCC----CCCcccccccccccccccccccCCCCC
Q psy11858 100 ------VNQLLDLMSRQRRHIIPKCST----HNSQELLFCETCDTVFCLQCTGGSNHS 147 (267)
Q Consensus 100 ------l~~~v~~~~~~~~~~~~~C~~----H~~~~~~fC~~C~~~iC~~C~~~~~H~ 147 (267)
+++.++.+.+...-+...|.. .+......|..|+..+|..|..+- |.
T Consensus 257 rYe~l~lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t~-HG 313 (445)
T KOG1814|consen 257 RYEKLMLQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSKCNFAFCTLCKLTW-HG 313 (445)
T ss_pred HHHHHHHHHHHHhhcccccCChhhccCccccCchhhhhhhccCccHHHHHHHHhh-cC
Confidence 111111111111112222321 223345889999999999998773 44
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.47 E-value=1.6e-07 Score=56.61 Aligned_cols=39 Identities=44% Similarity=1.053 Sum_probs=33.3
Q ss_pred ecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
|+||++... .++.++|||.||..|+..++.. +...||.|
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~~~~-----~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKWLKS-----GNNTCPIC 39 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHHHHh-----CcCCCCCC
Confidence 789988866 9999999999999999998872 44679987
No 21
>KOG0320|consensus
Probab=98.46 E-value=1.6e-07 Score=75.29 Aligned_cols=52 Identities=31% Similarity=0.693 Sum_probs=42.5
Q ss_pred cccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
-.+..+.||||+..+.. +.|+...|||.||..||+..... ...||.|++.+.
T Consensus 127 ~~~~~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~------~~~CP~C~kkIt 178 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKN------TNKCPTCRKKIT 178 (187)
T ss_pred ccccccCCCceecchhh--ccccccccchhHHHHHHHHHHHh------CCCCCCcccccc
Confidence 33456899999998873 46777899999999999998874 478999998765
No 22
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.45 E-value=1.2e-07 Score=80.86 Aligned_cols=50 Identities=24% Similarity=0.566 Sum_probs=38.9
Q ss_pred cceecccccccccCC----CCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGE----HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~----r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
...|+||++.+.+.. +-+++.+|+|.||..||..|... ...||.||..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEee
Confidence 689999999876211 12356689999999999998763 358999999876
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.43 E-value=1.6e-07 Score=80.65 Aligned_cols=65 Identities=29% Similarity=0.577 Sum_probs=53.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHHh
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR 109 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~~ 109 (267)
.+.|-||...|. .|...+|||+||.-||..++.. ...||.|++.... ..++.++.+..+++.+..
T Consensus 25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~------qp~CP~Cr~~~~e-----srlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGT------QPFCPVCREDPCE-----SRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheee----cceecccccchhHHHHHHHhcC------CCCCccccccHHh-----hhcccchhHHHHHHhhhh
Confidence 689999999998 9999999999999999999874 4789999998874 355667777666665543
No 24
>KOG0823|consensus
Probab=98.38 E-value=2.8e-07 Score=77.06 Aligned_cols=52 Identities=25% Similarity=0.794 Sum_probs=46.0
Q ss_pred ccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
....+.|.||++.-. +|+.-.|||-||.-||-+|+..+ .+...||+|+..+.
T Consensus 44 ~~~~FdCNICLd~ak----dPVvTlCGHLFCWpClyqWl~~~---~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK----DPVVTLCGHLFCWPCLYQWLQTR---PNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccC----CCEEeecccceehHHHHHHHhhc---CCCeeCCccccccc
Confidence 345799999999998 99999999999999999999865 46778999998875
No 25
>KOG0317|consensus
Probab=98.20 E-value=1e-06 Score=75.94 Aligned_cols=52 Identities=29% Similarity=0.767 Sum_probs=44.0
Q ss_pred cccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.+....|.+|++.-. +|--.||||-||..||..|.... ..||.||....
T Consensus 233 ~~i~~a~~kC~LCLe~~~----~pSaTpCGHiFCWsCI~~w~~ek------~eCPlCR~~~~ 284 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRS----NPSATPCGHIFCWSCILEWCSEK------AECPLCREKFQ 284 (293)
T ss_pred ccCCCCCCceEEEecCCC----CCCcCcCcchHHHHHHHHHHccc------cCCCcccccCC
Confidence 334455689999999888 99999999999999999999853 34999999987
No 26
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=1.7e-06 Score=76.11 Aligned_cols=48 Identities=29% Similarity=0.733 Sum_probs=37.1
Q ss_pred cceecccccc-cccCCCCce--ec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCM-YDGGEHTPK--LL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~-~~~~~r~P~--~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...||+|+.. +. .|. ++ +|||.||.+|+..+|.. +...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~----np~~kl~i~~CGH~~C~sCv~~l~~~-----~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYR----NPSLKLMVNVCGHTLCESCVDLLFVR-----GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCcc----CcccccccCCCCCcccHHHHHHHhcC-----CCCCCCCCCCccch
Confidence 4689999973 33 343 12 79999999999999863 45689999998874
No 27
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=98.08 E-value=1.3e-06 Score=54.26 Aligned_cols=39 Identities=41% Similarity=0.953 Sum_probs=33.9
Q ss_pred CCCCCCCCCc-ccccccccccccccccccCCCCCCCCCCCCCceeeH
Q psy11858 115 IPKCSTHNSQ-ELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 115 ~~~C~~H~~~-~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
...|+.|++. ..+||.+|+.++|..|.... |+ +|.++++
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~-H~------~H~~~~i 42 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSG-HK------GHKIVPI 42 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTS-TT------TSEEEEC
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCC-CC------CCEEeEC
Confidence 5789999988 55999999999999999997 99 9998864
No 28
>KOG2164|consensus
Probab=97.94 E-value=3.4e-06 Score=77.97 Aligned_cols=52 Identities=31% Similarity=0.628 Sum_probs=44.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...||||+.... -|+...|||-||..||-++|... ...+.-.||.|+..+.+
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s-~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYS-AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhh-cccCCccCCchhhhccc
Confidence 689999999998 88888899999999999999864 23567899999987754
No 29
>KOG2660|consensus
Probab=97.92 E-value=7.1e-06 Score=72.02 Aligned_cols=72 Identities=18% Similarity=0.430 Sum_probs=53.4
Q ss_pred cccccccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHH
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQ 102 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~ 102 (267)
..++. .++|.+|..+|. ++-++ .|.||||.+||..+++. ...||.|+...... .-...+.....++.
T Consensus 10 ~~~n~-~itC~LC~GYli----DATTI~eCLHTFCkSCivk~l~~------~~~CP~C~i~ih~t-~pl~ni~~Drtlqd 77 (331)
T KOG2660|consen 10 TELNP-HITCRLCGGYLI----DATTITECLHTFCKSCIVKYLEE------SKYCPTCDIVIHKT-HPLLNIRSDRTLQD 77 (331)
T ss_pred hhccc-ceehhhccceee----cchhHHHHHHHHHHHHHHHHHHH------hccCCccceeccCc-cccccCCcchHHHH
Confidence 33443 799999999999 88876 59999999999999984 57899999887632 11234555666666
Q ss_pred HHHHH
Q psy11858 103 LLDLM 107 (267)
Q Consensus 103 ~v~~~ 107 (267)
++-++
T Consensus 78 iVyKL 82 (331)
T KOG2660|consen 78 IVYKL 82 (331)
T ss_pred HHHHH
Confidence 65443
No 30
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=97.87 E-value=7.3e-06 Score=49.86 Aligned_cols=38 Identities=34% Similarity=0.738 Sum_probs=33.0
Q ss_pred CCCCCCCC-cccccccccccccccccccCCCCCCCCCCCCCceeeH
Q psy11858 116 PKCSTHNS-QELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 116 ~~C~~H~~-~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
..|+.|++ ...+||.+|+.++|..|.... |+ +|.++++
T Consensus 1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~-H~------~H~~~~i 39 (39)
T cd00021 1 RLCDEHGEEPLSLFCETDRALLCVDCDLSV-HS------GHRRVPL 39 (39)
T ss_pred CCCCccCCcceEEEeCccChhhhhhcChhh-cC------CCCEeeC
Confidence 36999988 667999999999999999886 99 9988764
No 31
>KOG0978|consensus
Probab=97.85 E-value=5.2e-06 Score=80.14 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=43.3
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+.||+|+..+. +-++..|||.||..|+...... ..-.||.|+..+..
T Consensus 642 ~~LkCs~Cn~R~K----d~vI~kC~H~FC~~Cvq~r~et-----RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK----DAVITKCGHVFCEECVQTRYET-----RQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh----hHHHHhcchHHHHHHHHHHHHH-----hcCCCCCCCCCCCc
Confidence 3799999998887 8889999999999999999885 45789999999874
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.82 E-value=1.4e-05 Score=65.16 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=43.7
Q ss_pred cCCccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 20 s~~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...+++ .+.|.||...|. .|+...|||+||..|...... ....|-+|.+.+.
T Consensus 189 ~~~~e~I---PF~C~iCKkdy~----spvvt~CGH~FC~~Cai~~y~------kg~~C~~Cgk~t~ 241 (259)
T COG5152 189 SGPGEKI---PFLCGICKKDYE----SPVVTECGHSFCSLCAIRKYQ------KGDECGVCGKATY 241 (259)
T ss_pred cCCCCCC---ceeehhchhhcc----chhhhhcchhHHHHHHHHHhc------cCCcceecchhhc
Confidence 3444544 689999999998 999999999999999877665 3468999999876
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-05 Score=67.50 Aligned_cols=49 Identities=31% Similarity=0.627 Sum_probs=41.2
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...|.||.+.-. .|...+|||-||..||-..|..+ ..-.||.||+....
T Consensus 215 d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t~~----k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWTKK----KYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccC----CcccccccchhhHHHHHHHHHhh----ccccCchhhhhccc
Confidence 577999999988 99999999999999999866642 33459999998774
No 34
>smart00336 BBOX B-Box-type zinc finger.
Probab=97.70 E-value=2.3e-05 Score=48.39 Aligned_cols=39 Identities=33% Similarity=0.906 Sum_probs=33.5
Q ss_pred CCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCceeeH
Q psy11858 115 IPKCSTHN-SQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 115 ~~~C~~H~-~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
...|+.|+ +...+||.+|+.++|..|... .|+ +|.+.++
T Consensus 3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~-~H~------~H~~~~l 42 (42)
T smart00336 3 PPKCDSHGDEPAEFFCEECGALLCRTCDEA-EHR------GHTVVLL 42 (42)
T ss_pred CCcCCCCCCCceEEECCCCCcccccccChh-hcC------CCceecC
Confidence 46899998 666799999999999999988 699 9988653
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.69 E-value=5.8e-05 Score=53.79 Aligned_cols=54 Identities=31% Similarity=0.798 Sum_probs=42.4
Q ss_pred cceeccccccccc--------CCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG--------GEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~--------~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-.|+||...|+. ++.-|+.+ .|+|.|-..||.+|.+.+ ++.-.||.||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~---~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ---SSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc---cCCCCCCCcCCeeee
Confidence 4678888888872 45567654 699999999999999965 235699999998764
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.68 E-value=1.5e-05 Score=55.80 Aligned_cols=45 Identities=29% Similarity=0.734 Sum_probs=32.7
Q ss_pred ceeccccccccc--------CCCCc-eecCCCCHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 31 LTCGTCLCMYDG--------GEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 31 l~C~iC~~~~~~--------~~r~P-~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
-.|+||++.|.+ ++..| ...+|||.|...||.+|+..+ ..||.||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~------~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN------NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS------SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC------CcCCCCC
Confidence 349999999942 11233 345899999999999999742 3999997
No 37
>KOG0311|consensus
Probab=97.64 E-value=1.5e-05 Score=70.59 Aligned_cols=53 Identities=25% Similarity=0.696 Sum_probs=42.7
Q ss_pred cccccccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..|.. .+.|+||+.++. .-.+. .|+|-||..||-.... .+.-.||.||+....
T Consensus 38 ~~~~~-~v~c~icl~llk----~tmttkeClhrfc~~ci~~a~r-----~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 38 AMFDI-QVICPICLSLLK----KTMTTKECLHRFCFDCIWKALR-----SGNNECPTCRKKLVS 91 (381)
T ss_pred HHhhh-hhccHHHHHHHH----hhcccHHHHHHHHHHHHHHHHH-----hcCCCCchHHhhccc
Confidence 34444 799999999998 55554 6999999999987776 466799999998874
No 38
>KOG0824|consensus
Probab=97.59 E-value=2.9e-05 Score=67.33 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=41.2
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|+||++.-+ .|+.|+|+|-||.-||+.... .+...|+.|+.++.
T Consensus 7 ~~eC~IC~nt~n----~Pv~l~C~HkFCyiCiKGsy~-----ndk~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGN----CPVNLYCFHKFCYICIKGSYK-----NDKKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCC----cCccccccchhhhhhhcchhh-----cCCCCCceecCCCC
Confidence 467999999998 999999999999999988666 35677999999986
No 39
>KOG2879|consensus
Probab=97.48 E-value=6e-05 Score=64.63 Aligned_cols=49 Identities=24% Similarity=0.631 Sum_probs=41.8
Q ss_pred ccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+..+|++|...-. .|.... |||.||..|+...... ...+.||.|+.+..
T Consensus 238 ~~~~C~~Cg~~Pt----iP~~~~~C~HiyCY~Ci~ts~~~----~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPT----IPHVIGKCGHIYCYYCIATSRLW----DASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCC----CCeeeccccceeehhhhhhhhcc----hhhcccCccCCCCc
Confidence 4789999999888 898765 9999999999887663 35799999999876
No 40
>KOG3161|consensus
Probab=97.47 E-value=6.2e-05 Score=71.27 Aligned_cols=69 Identities=22% Similarity=0.475 Sum_probs=52.7
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
.+-|+||.+.|....+.|+.|.|||++|..|++..... .|| |+..-...-..++.++.|+.+.+.+...
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--------scp-~~~De~~~~~~~~e~p~n~alL~~~~d~ 79 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--------SCP-TKRDEDSSLMQLKEEPRNYALLRREHDA 79 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--------cCC-CCccccchhcChhhcchhHHHHHhhcch
Confidence 68999998888877889999999999999999887763 577 4444333344557788888877665443
No 41
>KOG4159|consensus
Probab=97.44 E-value=5.9e-05 Score=69.14 Aligned_cols=48 Identities=33% Similarity=0.861 Sum_probs=42.6
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+++.|-||...|. .|+.+||||+||..||.+... ....||.|+..+.
T Consensus 82 ~sef~c~vc~~~l~----~pv~tpcghs~c~~Cl~r~ld------~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALY----PPVVTPCGHSFCLECLDRSLD------QETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcC----CCccccccccccHHHHHHHhc------cCCCCcccccccc
Confidence 55899999999999 999999999999999988554 4578999999887
No 42
>KOG4628|consensus
Probab=97.42 E-value=7.4e-05 Score=66.93 Aligned_cols=49 Identities=33% Similarity=0.840 Sum_probs=40.7
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+|.||++.|..++.- +.|||.|.|=..||..|+.. .--.||.|+....
T Consensus 230 ~~CaIClEdY~~Gdkl-RiLPC~H~FH~~CIDpWL~~-----~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKL-RILPCSHKFHVNCIDPWLTQ-----TRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCee-eEecCCCchhhccchhhHhh-----cCccCCCCCCcCC
Confidence 4999999999855433 56999999999999999985 3357999999776
No 43
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00011 Score=65.44 Aligned_cols=58 Identities=38% Similarity=0.748 Sum_probs=46.3
Q ss_pred ccccccccceecccccc-ccc--------CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 23 YEDFNESFLTCGTCLCM-YDG--------GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~-~~~--------~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.+.+..+.-+|.||.+. |.. .+..|+.|||||.+=..|++.|.+.+ ..||.||.+...
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq------QTCPICr~p~if 346 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ------QTCPICRRPVIF 346 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc------cCCCcccCcccc
Confidence 34455567899999977 432 35678999999999999999999964 589999999654
No 44
>KOG0802|consensus
Probab=97.33 E-value=0.00011 Score=70.73 Aligned_cols=53 Identities=34% Similarity=0.565 Sum_probs=43.2
Q ss_pred cccccceeccccccccc-CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCcee
Q psy11858 26 FNESFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~-~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~ 84 (267)
.......|+||.+.+.. .+..|..|+|||.|+..|+..|.+.+ ..||.||...
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~------qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ------QTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh------CcCCcchhhh
Confidence 44457899999999982 22338999999999999999999963 6899999944
No 45
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.30 E-value=0.0003 Score=61.04 Aligned_cols=66 Identities=23% Similarity=0.548 Sum_probs=49.1
Q ss_pred cceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
.|.|++|+.++. .|.-. -|+|+||..||...+- ...+.||.|...-.+- ..|.+.+....-|+...
T Consensus 274 ~LkCplc~~Llr----np~kT~cC~~~fc~eci~~al~-----dsDf~CpnC~rkdvll----d~l~pD~dk~~EvE~~l 340 (427)
T COG5222 274 SLKCPLCHCLLR----NPMKTPCCGHTFCDECIGTALL-----DSDFKCPNCSRKDVLL----DGLTPDIDKKLEVEKAL 340 (427)
T ss_pred cccCcchhhhhh----CcccCccccchHHHHHHhhhhh-----hccccCCCcccccchh----hccCccHHHHHHHHHHH
Confidence 499999999998 88776 5999999999987665 3569999999865442 45555555554455443
No 46
>KOG1002|consensus
Probab=97.28 E-value=0.00015 Score=67.40 Aligned_cols=60 Identities=25% Similarity=0.552 Sum_probs=48.7
Q ss_pred CccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 22 NYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 22 ~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+..+-+.++..|.+|++.-. +++.-.|.|.||+.|+..+...-.. +..+.||.|.....+
T Consensus 528 n~~~enk~~~~C~lc~d~ae----d~i~s~ChH~FCrlCi~eyv~~f~~-~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 528 NLPDENKGEVECGLCHDPAE----DYIESSCHHKFCRLCIKEYVESFME-NNNVTCPVCHIGLSI 587 (791)
T ss_pred CCCccccCceeecccCChhh----hhHhhhhhHHHHHHHHHHHHHhhhc-ccCCCCccccccccc
Confidence 33444556899999999998 9999999999999999888876543 345999999988764
No 47
>KOG1812|consensus
Probab=97.07 E-value=0.00056 Score=62.97 Aligned_cols=116 Identities=20% Similarity=0.425 Sum_probs=74.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHHh
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR 109 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~~ 109 (267)
..+|.||...+......-..+.|+|-||..|+.++.+.+...+..+.||.-+-...++......+.++ .+..+.+....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 46899998544422122234579999999999998887666678999999777777766666666666 33333332211
Q ss_pred h-----cc---cCCCCCCCCCC---------cccccccccccccccccccCCCCC
Q psy11858 110 Q-----RR---HIIPKCSTHNS---------QELLFCETCDTVFCLQCTGGSNHS 147 (267)
Q Consensus 110 ~-----~~---~~~~~C~~H~~---------~~~~fC~~C~~~iC~~C~~~~~H~ 147 (267)
. .. -+.+.|+.-.. ....-|..|+...|..|...- |.
T Consensus 225 e~~i~~~~~~ycp~~~C~~l~~~~el~~~~~~~~~~C~~C~~~fCv~C~~~w-h~ 278 (384)
T KOG1812|consen 225 EEVIPSLDRVYCPYPRCSSLMSKTELSSEVKSKRRPCVKCHELFCVKCKVPW-HA 278 (384)
T ss_pred HHhhhhhhcccCCCCCchHhhhhhhhccchhhcccccccCCCceeecCCCcC-CC
Confidence 1 11 13444533211 122569999999999998874 66
No 48
>KOG1813|consensus
Probab=97.02 E-value=0.00024 Score=61.62 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=40.3
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|.||.+.|. .|+.-.|+|+||..|....+. ....|++|.+.+.
T Consensus 241 Pf~c~icr~~f~----~pVvt~c~h~fc~~ca~~~~q------k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFY----RPVVTKCGHYFCEVCALKPYQ------KGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccc----cchhhcCCceeehhhhccccc------cCCcceecccccc
Confidence 567999999999 999999999999999876665 3468999999987
No 49
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.82 E-value=0.00055 Score=47.45 Aligned_cols=58 Identities=26% Similarity=0.521 Sum_probs=27.5
Q ss_pred cceecccccccccCCCCceec----CCCCHHHHhhHHHHHHhccCCCC-----ccccCCCCceeecC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL----PCSHTVCLHCLSRIAASQTRETG-----TLRCPICREQITIP 87 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L----~C~HsfC~~Ci~~~~~~~~~~~~-----~~~CP~C~~~~~~~ 87 (267)
++.|+||+..+.+..+.|... .|+..|=..|+.+|+.....+.. .-.||.|+.++..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 578999998876455566554 58889999999999986422211 23699999998753
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.80 E-value=0.00038 Score=46.15 Aligned_cols=42 Identities=26% Similarity=0.542 Sum_probs=30.9
Q ss_pred cceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPI 79 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~ 79 (267)
.+.|||.+..|. +|+. ..|||+|.+..|.+++.. .+...||.
T Consensus 11 ~~~CPiT~~~~~----~PV~s~~C~H~fek~aI~~~i~~----~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE----DPVKSKKCGHTFEKEAILQYIQR----NGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S----SEEEESSS--EEEHHHHHHHCTT----TS-EE-SC
T ss_pred ccCCCCcCChhh----CCcCcCCCCCeecHHHHHHHHHh----cCCCCCCC
Confidence 589999999999 9987 589999999999999832 57899998
No 51
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0012 Score=57.48 Aligned_cols=50 Identities=24% Similarity=0.707 Sum_probs=41.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
...|.||...|--.+ .-+.|||.|-|=..|+.+|... ....||.|+...+
T Consensus 323 GveCaICms~fiK~d-~~~vlPC~H~FH~~Cv~kW~~~-----y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKND-RLRVLPCDHRFHVGCVDKWLLG-----YSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccc-eEEEeccCceechhHHHHHHhh-----hcccCCccCCCCC
Confidence 478999999886322 3567899999999999999983 5578999998875
No 52
>KOG1039|consensus
Probab=96.58 E-value=0.0014 Score=59.09 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=40.4
Q ss_pred ccceecccccccccCCCCce-----e---cCCCCHHHHhhHHHHHHhc-cCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPK-----L---LPCSHTVCLHCLSRIAASQ-TRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~-----~---L~C~HsfC~~Ci~~~~~~~-~~~~~~~~CP~C~~~~~~ 86 (267)
.+..|+||.+... ++. . .+|.|+||.+||..|-... ........||.||.....
T Consensus 160 ~~k~CGICme~i~----ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETIN----EKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhcc----ccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3689999998887 444 2 4699999999999887431 112336899999998874
No 53
>KOG1785|consensus
Probab=96.46 E-value=0.0014 Score=59.09 Aligned_cols=48 Identities=31% Similarity=0.644 Sum_probs=39.3
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-.|.||-+.-. +-++-||||-.|..|+..|... .....||.||..+.-
T Consensus 370 eLCKICaendK----dvkIEPCGHLlCt~CLa~WQ~s----d~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK----DVKIEPCGHLLCTSCLAAWQDS----DEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC----CcccccccchHHHHHHHhhccc----CCCCCCCceeeEecc
Confidence 45999987666 8888899999999999988753 336789999998863
No 54
>KOG0297|consensus
Probab=96.36 E-value=0.0024 Score=59.09 Aligned_cols=48 Identities=29% Similarity=0.787 Sum_probs=41.4
Q ss_pred ccceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|++|...+. +|+. ..|||.||..|+..+... ...||.|+.....
T Consensus 20 ~~l~C~~C~~vl~----~p~~~~~cgh~fC~~C~~~~~~~------~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLR----DPVQTTTCGHRFCAGCLLESLSN------HQKCPVCRQELTQ 68 (391)
T ss_pred ccccCcccccccc----CCCCCCCCCCcccccccchhhcc------CcCCcccccccch
Confidence 3799999999998 9998 599999999999988763 5789999777664
No 55
>KOG0825|consensus
Probab=96.23 E-value=0.0011 Score=64.38 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=36.4
Q ss_pred cceecccccccccCCCCcee---cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL---LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~---L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.||+|..-+. +-.. .+|+|.||..|+..|.. ..-.||.|+..+.
T Consensus 123 ~~~CP~Ci~s~~----DqL~~~~k~c~H~FC~~Ci~sWsR------~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCN----DQLEESEKHTAHYFCEECVGSWSR------CAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHH----HHhhccccccccccHHHHhhhhhh------hcccCchhhhhhh
Confidence 467999998887 3222 36999999999998876 3468999999885
No 56
>KOG0804|consensus
Probab=96.21 E-value=0.0019 Score=59.17 Aligned_cols=55 Identities=25% Similarity=0.498 Sum_probs=41.3
Q ss_pred CccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 22 NYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 22 ~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.-.+.+ --+||+|++..+....--+...|.|+|=..|+..||. ..||.||.-..
T Consensus 168 ~~~~~tE-LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--------~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTE-LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--------SSCPVCRYCQS 222 (493)
T ss_pred CCCCccc-CCCcchhHhhcCccccceeeeecccccchHHHhhccc--------CcChhhhhhcC
Confidence 3344544 7899999999984333335668999998889999987 47898887654
No 57
>KOG4172|consensus
Probab=96.10 E-value=0.0026 Score=41.09 Aligned_cols=46 Identities=30% Similarity=0.610 Sum_probs=37.6
Q ss_pred ceecccccccccCCCCceecCCCC-HHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSH-TVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~H-sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..|.||.+.-. +.++..||| -.|..|-.+.|.. ..-.||.||+++.
T Consensus 8 dECTICye~pv----dsVlYtCGHMCmCy~Cg~rl~~~-----~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPV----DSVLYTCGHMCMCYACGLRLKKA-----LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcc----hHHHHHcchHHhHHHHHHHHHHc-----cCCcCcchhhHHH
Confidence 67999987766 777889999 5799999888873 4468999999865
No 58
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.01 E-value=0.002 Score=41.87 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=34.7
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+..|-.|...-. ....++|||.+|..|.... .-..||.|..++..
T Consensus 7 ~~~~~~~~~~~~----~~~~~pCgH~I~~~~f~~~--------rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGT----KGTVLPCGHLICDNCFPGE--------RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccc----ccccccccceeeccccChh--------hccCCCCCCCcccC
Confidence 566777766555 7889999999999998533 34579999998863
No 59
>KOG1493|consensus
Probab=95.97 E-value=0.0028 Score=43.80 Aligned_cols=52 Identities=33% Similarity=0.819 Sum_probs=42.9
Q ss_pred eeccccccccc--------CCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 32 TCGTCLCMYDG--------GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 32 ~C~iC~~~~~~--------~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+|+||...|+. ++.-|..+. |.|.|=..||.+|...+ ++.-.||.||+...+
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~---tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP---TSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc---cccccCCcchheeEe
Confidence 89999988872 667887764 99999999999999864 455789999998764
No 60
>KOG4692|consensus
Probab=95.89 E-value=0.005 Score=54.83 Aligned_cols=59 Identities=22% Similarity=0.470 Sum_probs=43.5
Q ss_pred chhcccCCccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 15 LVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 15 ~~~~~s~~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+..+++..+. ++-.||||..--- ..++-||+|-.|..||.++.- +...|-.|+..+.
T Consensus 409 ~~~~~~~~lp~s--Ed~lCpICyA~pi----~Avf~PC~H~SC~~CI~qHlm------N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 409 KEESFNKDLPDS--EDNLCPICYAGPI----NAVFAPCSHRSCYGCITQHLM------NCKRCFFCKTTVI 467 (489)
T ss_pred hHHhhcCCCCCc--ccccCcceecccc----hhhccCCCCchHHHHHHHHHh------cCCeeeEecceee
Confidence 334444544443 4688999975554 567779999999999999886 4568999998776
No 61
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.83 E-value=0.012 Score=45.42 Aligned_cols=50 Identities=18% Similarity=0.524 Sum_probs=44.3
Q ss_pred cceecccccccccCCCCceecC----CCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLP----CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~----C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...|.||.+... +..+|. ||=++|..|-...|+.. ..-..||.|+.++..
T Consensus 80 lYeCnIC~etS~----ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSA----EERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccc----hhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCcccccccc
Confidence 578999999998 888883 99999999999999974 467899999999874
No 62
>KOG1734|consensus
Probab=95.75 E-value=0.002 Score=55.30 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=41.3
Q ss_pred cceecccccccccCC-C-----CceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGE-H-----TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~-r-----~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-.|.+|.+.++... . +-..|.|+|.|=.-||+.|.-- +....||.|++...+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv----GKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV----GKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee----cCCCCCchHHHHhhH
Confidence 478999999887211 0 2246789999999999998864 356789999999886
No 63
>KOG1645|consensus
Probab=95.62 E-value=0.0075 Score=54.73 Aligned_cols=52 Identities=29% Similarity=0.649 Sum_probs=43.9
Q ss_pred cceeccccccccc-CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+||||++.+.. +++.-+.+.|||-|-..||++|+-+ .....||.|.....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k----~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK----KTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh----hhhhhCcccCChhH
Confidence 5789999998874 6677788999999999999999942 46789999997765
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.53 E-value=0.025 Score=36.22 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=33.8
Q ss_pred eecccccccccCCCCceecCCC-----CHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~-----HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
.|-||+. .+...+|...||. |.+=..|+.+|.... +...||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~----~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPCRCKGSLKYVHQECLERWINES----GNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEeccccCCchhHHHHHHHHHHHHHc----CCCcCCCCC
Confidence 4889987 2234588889985 788899999999863 446899985
No 65
>KOG3800|consensus
Probab=95.42 E-value=0.014 Score=50.69 Aligned_cols=46 Identities=33% Similarity=0.767 Sum_probs=35.5
Q ss_pred eecccc-cccccCCCCcee----cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 32 TCGTCL-CMYDGGEHTPKL----LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 32 ~C~iC~-~~~~~~~r~P~~----L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.||+|. ..|- .|-+ -+|+|+.|.+|+...+. .+...||.|......
T Consensus 2 ~Cp~CKt~~Y~----np~lk~~in~C~H~lCEsCvd~iF~-----~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYL----NPDLKLMINECGHRLCESCVDRIFS-----LGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceec----CccceeeeccccchHHHHHHHHHHh-----cCCCCCCcccchhhh
Confidence 489998 3333 4422 28999999999999887 477899999988764
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.39 E-value=0.015 Score=36.90 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=22.9
Q ss_pred ecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCcee
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~ 84 (267)
||+|-+.++..+.+-.--+||.-+|+-|.....+ ...-.||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-----~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-----NEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-----SS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-----ccCCCCCCCCCCC
Confidence 7888888864333333336999999999887765 2457899999875
No 67
>KOG4739|consensus
Probab=95.38 E-value=0.078 Score=45.12 Aligned_cols=46 Identities=33% Similarity=0.880 Sum_probs=34.7
Q ss_pred cceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.+.|..|+..-. .+|..| .|+|.||..|...... -.||.|++++..
T Consensus 3 ~VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~~--------~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 3 FVHCNKCFRFPS---QDPFFLTACRHVFCEPCLKASSP--------DVCPLCKKSIRI 49 (233)
T ss_pred eEEeccccccCC---CCceeeeechhhhhhhhcccCCc--------cccccccceeee
Confidence 477998865444 478776 6999999999864322 289999999763
No 68
>KOG1941|consensus
Probab=95.05 E-value=0.017 Score=52.23 Aligned_cols=51 Identities=37% Similarity=0.689 Sum_probs=42.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
-++-|..|.+.+...+..-.-|||.|.|=.+|+...++. .+.-.||.|++.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~----n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN----NGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh----CCCCCCccHHHH
Confidence 368999999999864444456899999999999999986 467899999943
No 69
>KOG2817|consensus
Probab=94.98 E-value=0.024 Score=51.40 Aligned_cols=59 Identities=22% Similarity=0.468 Sum_probs=45.1
Q ss_pred cccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-.....++|||=.+.-. +.+-|..|.|||.+|..=+.+.... +...|.||.|......
T Consensus 328 ~~~fHSvF~CPVlKeqts-deNPPm~L~CGHVISkdAlnrLS~n---g~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 328 EYHFHSVFICPVLKEQTS-DENPPMMLICGHVISKDALNRLSKN---GSQSFKCPYCPVEQLA 386 (394)
T ss_pred cccccceeecccchhhcc-CCCCCeeeeccceecHHHHHHHhhC---CCeeeeCCCCCcccCH
Confidence 333456899999776554 4568899999999999999887763 2346999999987653
No 70
>KOG4265|consensus
Probab=94.90 E-value=0.017 Score=51.64 Aligned_cols=48 Identities=38% Similarity=0.763 Sum_probs=38.9
Q ss_pred cccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
++.-.|-||...-. +-+.|||.|. .|.+|.....-+ .-.||.||..+.
T Consensus 288 ~~gkeCVIClse~r----dt~vLPCRHLCLCs~Ca~~Lr~q------~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESR----DTVVLPCRHLCLCSGCAKSLRYQ------TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCc----ceEEecchhhehhHhHHHHHHHh------hcCCCccccchH
Confidence 34688999988776 9999999995 699999876632 247999999876
No 71
>KOG0827|consensus
Probab=94.72 E-value=0.022 Score=51.42 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=33.9
Q ss_pred ceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 31 LTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
+.|.||-+.+. -+++-.-+ .|||.|=..|+..|++... ..-.||.|+
T Consensus 5 A~C~Ic~d~~p-~~~~l~~i~~cGhifh~~cl~qwfe~~P---s~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRP-NDHELGPIGTCGHIFHTTCLTQWFEGDP---SNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCc-cccccccccchhhHHHHHHHHHHHccCC---ccCCCCcee
Confidence 68999955554 23333333 4999999999999999532 225899999
No 72
>KOG1815|consensus
Probab=94.71 E-value=0.054 Score=51.01 Aligned_cols=64 Identities=25% Similarity=0.518 Sum_probs=43.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCc--cccCCCCceeecCCCCCCCCCc
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT--LRCPICREQITIPRGGVAALPP 96 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~--~~CP~C~~~~~~~~~~v~~l~~ 96 (267)
...|.||...+.. ....+.|||.||..|+..+.......... +.||.=+....+....|..+..
T Consensus 70 ~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s 135 (444)
T KOG1815|consen 70 DVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVS 135 (444)
T ss_pred cccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecC
Confidence 5899999888872 46677999999999999988764322222 7788744444443444433333
No 73
>KOG4275|consensus
Probab=94.17 E-value=0.0063 Score=52.87 Aligned_cols=42 Identities=36% Similarity=0.785 Sum_probs=33.2
Q ss_pred cceecccccccccCCCCceecCCCCHH-HHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~Hsf-C~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|.||.+.-. +-++|+|||.. |..|-.+. ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~----DCvfLeCGHmVtCt~CGkrm----------~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR----DCVFLECGHMVTCTKCGKRM----------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc----ceEEeecCcEEeehhhcccc----------ccCchHHHHHH
Confidence 457999988877 89999999965 88886433 36999998764
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.15 E-value=0.048 Score=47.64 Aligned_cols=52 Identities=21% Similarity=0.479 Sum_probs=39.9
Q ss_pred ccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
....+.|||....|+...+--.+.+|||.|+..++...- ....||.|..++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-------~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-------KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-------ccccccccCCccc
Confidence 455899999999996433333445999999999998874 1235999999987
No 75
>KOG3002|consensus
Probab=94.09 E-value=0.028 Score=49.91 Aligned_cols=60 Identities=22% Similarity=0.635 Sum_probs=42.5
Q ss_pred cccccceecccccccccCCCCceecCC--CCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHH
Q psy11858 26 FNESFLTCGTCLCMYDGGEHTPKLLPC--SHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQL 103 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~r~P~~L~C--~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~ 103 (267)
+.-+.+.||+|.+.+. |-++.| ||..|..|-.+.. ..||.|+.++.. ..++.+..+
T Consensus 44 ~~~~lleCPvC~~~l~-----~Pi~QC~nGHlaCssC~~~~~---------~~CP~Cr~~~g~--------~R~~amEkV 101 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLS-----PPIFQCDNGHLACSSCRTKVS---------NKCPTCRLPIGN--------IRCRAMEKV 101 (299)
T ss_pred cchhhccCchhhccCc-----ccceecCCCcEehhhhhhhhc---------ccCCcccccccc--------HHHHHHHHH
Confidence 3445799999999995 555666 7999999986443 479999999872 345555555
Q ss_pred HHHH
Q psy11858 104 LDLM 107 (267)
Q Consensus 104 v~~~ 107 (267)
++..
T Consensus 102 ~e~~ 105 (299)
T KOG3002|consen 102 AEAV 105 (299)
T ss_pred HHhc
Confidence 4443
No 76
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.86 E-value=0.11 Score=36.39 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=36.9
Q ss_pred ceecccccccc-----------cCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYD-----------GGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~-----------~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-.|+||.+.+. .++.-|+.- -|.|.|=..||.+|+..+ -.||.+++...+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk------~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK------GVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC------CCCCCCCceeEE
Confidence 34666655554 344556554 599999999999999854 479999998875
No 77
>KOG3039|consensus
Probab=93.23 E-value=0.053 Score=46.18 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=42.5
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.||+|.+.+....+-.++-+|||.||..|++++.. ....||.|..+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir------~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR------KDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc------ccccccCCCCcCc
Confidence 36899999999986555556679999999999999887 4578999998875
No 78
>KOG1001|consensus
Probab=92.28 E-value=0.063 Score=52.96 Aligned_cols=46 Identities=26% Similarity=0.697 Sum_probs=38.9
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..|++|.+ .. .++...|+|.||..|+...++.. ....||.|+..+.
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~~----~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQS----ENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhccccc----cCCCCcHHHHHHH
Confidence 89999999 55 88889999999999999988863 3338999998775
No 79
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.84 E-value=0.078 Score=53.14 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=39.4
Q ss_pred cceeccccccccc-CCCCc--eecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDG-GEHTP--KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P--~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|+||.-++.. +..-| +--.|.|.|=.+|+-+|+.. ++..+||.||.++.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S----s~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS----SARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh----cCCCCCCccccccc
Confidence 5679999988872 22223 12259999999999999985 57789999997654
No 80
>PHA03096 p28-like protein; Provisional
Probab=91.54 E-value=0.14 Score=45.16 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=32.3
Q ss_pred ceecccccccccC---CCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 31 LTCGTCLCMYDGG---EHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 31 l~C~iC~~~~~~~---~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
-.|+||.+..... +|.=-+| .|.|.||..|+..|............||.|+.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~ 235 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTV 235 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhH
Confidence 6799999766531 1122233 599999999999887653222333444444443
No 81
>KOG1940|consensus
Probab=91.34 E-value=0.14 Score=44.84 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=40.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCc
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~ 82 (267)
+..||||...+..+...|..++|||..=..|+....- .+ ++||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~-----~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC-----EG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhc-----cC-CCCCcccc
Confidence 4569999998888888999999999998999987776 35 99999999
No 82
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.34 E-value=0.18 Score=44.45 Aligned_cols=54 Identities=24% Similarity=0.543 Sum_probs=41.0
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
...++||+=.+.-. +.+-|++|.|||.+-..-+....+ .+...|.||.|.....
T Consensus 334 Hs~FiCPVlKe~~t-~ENpP~ml~CgHVIskeal~~LS~---nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 334 HSLFICPVLKELCT-DENPPVMLECGHVISKEALSVLSQ---NGVLSFKCPYCPEMSK 387 (396)
T ss_pred cceeeccccHhhhc-ccCCCeeeeccceeeHHHHHHHhh---cCcEEeeCCCCCcchh
Confidence 34789998765543 445899999999998888776655 3466899999987654
No 83
>KOG4362|consensus
Probab=90.85 E-value=0.046 Score=53.22 Aligned_cols=50 Identities=32% Similarity=0.780 Sum_probs=42.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
-++.||||...+. +|..+.|.|.||..|+-..+..+ .+...||.|+....
T Consensus 20 k~lEc~ic~~~~~----~p~~~kc~~~~l~~~~n~~f~~~---~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVK----EPSLLKCDHIFLKFCLNKLFESK---KGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEee----ccchhhhhHHHHhhhhhceeecc---Cccccchhhhhhhh
Confidence 3899999999998 99999999999999998766643 34789999996655
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.85 E-value=0.26 Score=44.05 Aligned_cols=58 Identities=26% Similarity=0.604 Sum_probs=42.6
Q ss_pred cCCccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 20 s~~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..++++-.++...|-||-.-.. =--.+||+|-.|--|.-+.-.- -..-.||.|+....
T Consensus 51 tsSaddtDEen~~C~ICA~~~T----Ys~~~PC~H~~CH~Ca~RlRAL----Y~~K~C~~CrTE~e 108 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTT----YSARYPCGHQICHACAVRLRAL----YMQKGCPLCRTETE 108 (493)
T ss_pred cccccccccccceeEEecCCce----EEEeccCCchHHHHHHHHHHHH----HhccCCCccccccc
Confidence 3445667778899999988877 5567899999999997543322 12357999998763
No 85
>KOG4185|consensus
Probab=90.81 E-value=0.1 Score=46.25 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=41.7
Q ss_pred cceecccccccc--cCCCCceecC--------CCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYD--GGEHTPKLLP--------CSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~--~~~r~P~~L~--------C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
...|.+|...|. +....|..+. |||+.|..|+....... + +.||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~----~-~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA----G-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh----h-hcCCcccce
Confidence 367999999988 5888999998 99999999999887752 2 899999975
No 86
>KOG1571|consensus
Probab=90.77 E-value=0.069 Score=47.95 Aligned_cols=43 Identities=30% Similarity=0.723 Sum_probs=33.2
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..-|-||...+- +-+.+||||.-| |..-.. ....||.|+....
T Consensus 305 p~lcVVcl~e~~----~~~fvpcGh~cc--ct~cs~-------~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPK----SAVFVPCGHVCC--CTLCSK-------HLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCcc----ceeeecCCcEEE--chHHHh-------hCCCCchhHHHHH
Confidence 467999998887 889999999876 654332 2355999999876
No 87
>KOG1428|consensus
Probab=90.49 E-value=0.55 Score=49.49 Aligned_cols=53 Identities=30% Similarity=0.645 Sum_probs=37.9
Q ss_pred cceeccccc-ccccCCCCc-eecCCCCHHHHhhHHHHHHhccCC----CCccccCCCCceee
Q psy11858 30 FLTCGTCLC-MYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRE----TGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~-~~~~~~r~P-~~L~C~HsfC~~Ci~~~~~~~~~~----~~~~~CP~C~~~~~ 85 (267)
.-.|-||+. .+. -.| +.|.|+|-|=..|....++....+ -+.+.||.|+.++.
T Consensus 3486 DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 356889963 222 245 558999999999988877764322 24789999998875
No 88
>KOG0828|consensus
Probab=89.07 E-value=0.27 Score=46.02 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=40.3
Q ss_pred cccccceeccccccccc-------------CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 26 FNESFLTCGTCLCMYDG-------------GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~-------------~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.++...|+||....+. ..|.-...||.|.|=..|+.+|.+. ....||.||.+.+
T Consensus 567 ~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-----ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-----YKLICPVCRCPLP 634 (636)
T ss_pred hhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-----hcccCCccCCCCC
Confidence 34556789999876651 1122233489999999999999883 4578999998865
No 89
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.29 E-value=0.2 Score=42.57 Aligned_cols=49 Identities=33% Similarity=0.745 Sum_probs=35.4
Q ss_pred cceeccccc-ccccCCCCceec--C-CCCHHHHhhHHHHHHhccCCCCccccC--CCCceee
Q psy11858 30 FLTCGTCLC-MYDGGEHTPKLL--P-CSHTVCLHCLSRIAASQTRETGTLRCP--ICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~-~~~~~~r~P~~L--~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP--~C~~~~~ 85 (267)
.-.||+|.. .|-. -+-++| | |-|-.|.+|+.+.+. .+...|| .|.+...
T Consensus 10 d~~CPvCksDrYLn--Pdik~linPECyHrmCESCvdRIFs-----~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLN--PDIKILINPECYHRMCESCVDRIFS-----RGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccC--CCeEEEECHHHHHHHHHHHHHHHhc-----CCCCCCCCccHHHHHH
Confidence 458999983 3330 133344 4 999999999999988 4778999 6877664
No 90
>KOG2932|consensus
Probab=87.95 E-value=0.19 Score=44.22 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=33.5
Q ss_pred cccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 26 FNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+....-.|.-|....-. =-++++|.|.||+.|.... ....||.|...+.
T Consensus 86 l~p~VHfCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~~--------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 86 LGPRVHFCDRCDFPIAI---YGRMIPCKHVFCLECARSD--------SDKICPLCDDRVQ 134 (389)
T ss_pred cCcceEeecccCCccee---eecccccchhhhhhhhhcC--------ccccCcCcccHHH
Confidence 33335668888644431 2267899999999998632 2358999987765
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.83 E-value=0.67 Score=37.01 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=15.7
Q ss_pred ccceecccccccccCCCCceecCC
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPC 52 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C 52 (267)
+.++||||.+.-. +.++|-|
T Consensus 1 ed~~CpICme~PH----NAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPH----NAVLLLC 20 (162)
T ss_pred CCccCceeccCCC----ceEEEEe
Confidence 3689999988776 7888743
No 92
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=86.62 E-value=0.3 Score=31.69 Aligned_cols=39 Identities=26% Similarity=0.604 Sum_probs=25.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
.+.||.|.+.|+ . ..++.-|...... +...+.||.|...
T Consensus 2 ~f~CP~C~~~~~----~-------~~L~~H~~~~H~~----~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFS----E-------SSLVEHCEDEHRS----ESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccC----H-------HHHHHHHHhHCcC----CCCCccCCCchhh
Confidence 589999999665 2 2445545544333 2457999999864
No 93
>KOG3579|consensus
Probab=85.50 E-value=0.39 Score=41.86 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=38.4
Q ss_pred cceecccccccccCCCCceecCC----CCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPC----SHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C----~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
.|-|-+|++.+. |-.+..| .|.||.-|-.+..+.|+. .+.+.||.-
T Consensus 268 pLcCTLC~ERLE----DTHFVQCPSVp~HKFCFPCSResIK~Qg~-sgevYCPSG 317 (352)
T KOG3579|consen 268 PLCCTLCHERLE----DTHFVQCPSVPSHKFCFPCSRESIKQQGA-SGEVYCPSG 317 (352)
T ss_pred ceeehhhhhhhc----cCceeecCCCcccceecccCHHHHHhhcC-CCceeCCCC
Confidence 589999999998 7777777 699999999999988754 457888873
No 94
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=82.97 E-value=0.047 Score=37.47 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=23.7
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
++.||.|...+. +.. ++.+|..|-..+.. ...||.|+.++.+
T Consensus 1 e~~CP~C~~~L~-----~~~---~~~~C~~C~~~~~~-------~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE-----WQG---GHYHCEACQKDYKK-------EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE-----EET---TEEEETTT--EEEE-------EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE-----EeC---CEEECcccccccee-------cccCCCcccHHHH
Confidence 478999988874 433 77788888765433 4689999998873
No 95
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=82.61 E-value=2.5 Score=29.58 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred cceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-+|-||.+.... .+-+|... .|+-..|+.|.+=-.. .+...||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-----eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-----EGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-----TS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-----cCcccccccCCCccc
Confidence 4689999988863 33355554 6999999999974443 467899999988874
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=82.13 E-value=1.1 Score=40.12 Aligned_cols=49 Identities=27% Similarity=0.589 Sum_probs=38.1
Q ss_pred eecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
-||+|.+..+..+..-.-.+||--+|+=|.....+. -.-.||-||..+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-----lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-----LNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh-----ccCCChHhhhhcc
Confidence 399999988765555555689999999998766553 3458999999886
No 97
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.93 E-value=1.3 Score=30.39 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=37.1
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
--|.-|-..+..++.+..+-.=.++||..|....+.. .||.|.-.+.
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g--------~CPnCGGelv 52 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLHG--------LCPNCGGELV 52 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcC--------cCCCCCchhh
Confidence 3477787778777777777777789999999877763 6999998775
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.06 E-value=0.83 Score=29.24 Aligned_cols=48 Identities=27% Similarity=0.566 Sum_probs=22.9
Q ss_pred cceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
.|.||+....+. .|+- ..|.|.-|-+ +..+.+... ......||.|+++
T Consensus 2 sL~CPls~~~i~----~P~Rg~~C~H~~CFD-l~~fl~~~~-~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIR----IPVRGKNCKHLQCFD-LESFLESNQ-RTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-S----SEEEETT--SS--EE-HHHHHHHHH-HS---B-TTT---
T ss_pred eeeCCCCCCEEE----eCccCCcCcccceEC-HHHHHHHhh-ccCCeECcCCcCc
Confidence 478999999998 8866 4799987653 333443321 1345899999864
No 99
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=78.02 E-value=0.91 Score=29.49 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=28.3
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHH
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~ 64 (267)
-.|.+|...|+...+...--.||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4699999999877777777789999999998643
No 100
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=77.31 E-value=1.9 Score=33.62 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=27.8
Q ss_pred cceecccccccccCCCCceecCCC------CHHHHhhHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCS------HTVCLHCLSRIAA 66 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~------HsfC~~Ci~~~~~ 66 (267)
.+.|.||++..+. ..--+.++|| |-||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 7899999998884 2334556777 6799999998854
No 101
>KOG0298|consensus
Probab=77.25 E-value=1.1 Score=46.84 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=38.2
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|++|++... +.-.+..|||.+|..|...|... ...||.|+....
T Consensus 1152 ~~~~c~ic~dil~---~~~~I~~cgh~~c~~c~~~~l~~------~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILR---NQGGIAGCGHEPCCRCDELWLYA------SSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHH---hcCCeeeechhHhhhHHHHHHHH------hccCcchhhhhh
Confidence 4679999999986 24455689999999999999885 368999985443
No 102
>KOG2930|consensus
Probab=77.07 E-value=2.4 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.689 Sum_probs=24.9
Q ss_pred CCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 51 PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 51 ~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.|.|.|=.-||.+|+... ..||.|.+.-.
T Consensus 80 ~CNHaFH~hCisrWlktr------~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR------NVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhc------CcCCCcCccee
Confidence 599999999999999853 68999998754
No 103
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=75.16 E-value=2.4 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=34.3
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
-.|.-|...+..++.+..+-.=.-+||..|....+. -.||.|+-.+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--------~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--------GVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--------CcCcCCCCccc
Confidence 457888888875555555544344899999998775 37999998765
No 104
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=74.98 E-value=0.63 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=23.2
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
.-.|++|.+.+.. ..-...||||.|-..|+.
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 5679999999982 122335999999998874
No 105
>KOG2114|consensus
Probab=73.42 E-value=2.4 Score=42.50 Aligned_cols=48 Identities=27% Similarity=0.653 Sum_probs=37.6
Q ss_pred ccccccccceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 23 YEDFNESFLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+..|+ .-.|..|...++ -|.. .-|||+|=..|+. .+...||.|+....
T Consensus 835 a~i~q--~skCs~C~~~Ld----lP~VhF~CgHsyHqhC~e---------~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 835 AQIFQ--VSKCSACEGTLD----LPFVHFLCGHSYHQHCLE---------DKEDKCPKCLPELR 883 (933)
T ss_pred cceee--eeeecccCCccc----cceeeeecccHHHHHhhc---------cCcccCCccchhhh
Confidence 34444 368999999999 8855 6899999999997 24578999998543
No 106
>KOG3970|consensus
Probab=73.28 E-value=5.7 Score=33.65 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=41.4
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhcc--CCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT--RETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~--~~~~~~~CP~C~~~~~~ 86 (267)
--|.+|+..+.. ++-+.|-|-|-|=..|+.++...-. .--..+.||.|..++..
T Consensus 51 pNC~LC~t~La~--gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLAS--GDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCcccc--CcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 459999988864 3778899999999999988765421 11246899999998764
No 107
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.23 E-value=3.7 Score=25.84 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=23.3
Q ss_pred ecccccccccCCCCceecCCCC-----HHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSH-----TVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~H-----sfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
|-||++..... .|.+.||.= ..=..|+.+|.... +...|+.|
T Consensus 1 CrIC~~~~~~~--~~li~pC~C~Gs~~~vH~~CL~~W~~~~----~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED--EPLISPCRCKGSMKYVHRSCLERWIRES----GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS--S-EE-SSS-SSCCGSEECCHHHHHHHHH----T-SB-TTT
T ss_pred CeEeCCcCCCC--CceecccccCCCcchhHHHHHHHHHHhc----CCCcCCCC
Confidence 56887666532 267788761 11245999998863 45668876
No 108
>KOG1100|consensus
Probab=68.95 E-value=1.7 Score=36.57 Aligned_cols=39 Identities=41% Similarity=0.761 Sum_probs=29.3
Q ss_pred ecccccccccCCCCceecCCCC-HHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSH-TVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~H-sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
|-.|...-. .-.+|||.| .+|..|-.. ...||.|+..-.
T Consensus 161 Cr~C~~~~~----~VlllPCrHl~lC~~C~~~----------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREA----TVLLLPCRHLCLCGICDES----------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCc----eEEeecccceEeccccccc----------CccCCCCcChhh
Confidence 888877665 667789999 678888532 456999998654
No 109
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4571|consensus
Probab=66.26 E-value=20 Score=31.61 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
.|+..||++-+...+.+...++.++++..+|+....+++.+|+..++.|-
T Consensus 237 ~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 237 AAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888777777788888888888888898888888888888887663
No 111
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.15 E-value=5.5 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.714 Sum_probs=20.1
Q ss_pred CCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 53 SHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 53 ~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.||..|-.+-.. .||.|..++.
T Consensus 27 ~~~fC~kCG~~tI~---------~Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---------SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHHH---------HCcCCCCCCC
Confidence 56899999887665 6999999886
No 112
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.35 E-value=3 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 175 ANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 175 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
...+...+..++.....+....+.+...|...|..+
T Consensus 16 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 16 AAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 113
>KOG3268|consensus
Probab=65.07 E-value=9.1 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=28.2
Q ss_pred cCCCCHHHHhhHHHHHHhccCCC-----CccccCCCCceeecC
Q psy11858 50 LPCSHTVCLHCLSRIAASQTRET-----GTLRCPICREQITIP 87 (267)
Q Consensus 50 L~C~HsfC~~Ci~~~~~~~~~~~-----~~~~CP~C~~~~~~~ 87 (267)
..||.+|=.-|+..|+..-..+. -.-.||.|..++.++
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 36999999999999987632111 234799999998864
No 114
>KOG3113|consensus
Probab=64.01 E-value=5 Score=34.61 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=42.4
Q ss_pred CccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 22 NYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 22 ~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
..++.+...++|||=.-.+++.-|=-.+-+|||.|-.+=+.+... ..|+.|+..+...
T Consensus 103 ~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika--------s~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 103 KHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA--------SVCHVCGAAYQED 160 (293)
T ss_pred cccccccceeecccccceecceEEEEEEeccceeccHHHHHHhhh--------ccccccCCccccc
Confidence 345566678999999888874322333448999999887776654 5799999998743
No 115
>PHA02862 5L protein; Provisional
Probab=63.69 E-value=7.6 Score=30.62 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=34.8
Q ss_pred ceecccccccccCCCCceecCCC-----CHHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~-----HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
-.|=||++.-+ +. .-||. .-.=..|+++|... ++...||.|+.++..+
T Consensus 3 diCWIC~~~~~----e~-~~PC~C~GS~K~VHq~CL~~WIn~----S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCD----ER-NNFCGCNEEYKVVHIKCMQLWINY----SKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCC----CC-cccccccCcchhHHHHHHHHHHhc----CCCcCccCCCCeEEEE
Confidence 46889988754 22 34553 23457899999974 5788999999999853
No 116
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.30 E-value=3.5 Score=31.01 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.8
Q ss_pred CccccCCCCceeec
Q psy11858 73 GTLRCPICREQITI 86 (267)
Q Consensus 73 ~~~~CP~C~~~~~~ 86 (267)
..+.||.|+..+..
T Consensus 25 ~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPKCGTEFPP 38 (108)
T ss_pred CCccCCCCCCccCc
Confidence 45778999888875
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=63.16 E-value=1.8 Score=27.32 Aligned_cols=31 Identities=42% Similarity=1.057 Sum_probs=20.6
Q ss_pred ecCCC-CHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 49 LLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 49 ~L~C~-HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|. |..|.+|+..... ..-.||.|..+.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~------~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS------RSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S------SSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhc------cccCCCcccCcCc
Confidence 44564 6779999988775 4578999999876
No 118
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=62.15 E-value=1.3 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=18.1
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
.-.|.+|...|....|.-.=-.||+.||..|..
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 578999999998655555555799999988874
No 119
>KOG2807|consensus
Probab=60.24 E-value=1.5 Score=39.17 Aligned_cols=21 Identities=43% Similarity=0.918 Sum_probs=17.0
Q ss_pred cccccccccccccccccCCCCC
Q psy11858 126 LLFCETCDTVFCLQCTGGSNHS 147 (267)
Q Consensus 126 ~~fC~~C~~~iC~~C~~~~~H~ 147 (267)
.|-|..|+..+|..|-..- |.
T Consensus 345 ~y~C~~Ck~~FCldCDv~i-He 365 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFI-HE 365 (378)
T ss_pred cEEchhccceeeccchHHH-Hh
Confidence 4889999999999997653 54
No 120
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=59.80 E-value=5.8 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=9.3
Q ss_pred HHHHhhHHHHHHh
Q psy11858 55 TVCLHCLSRIAAS 67 (267)
Q Consensus 55 sfC~~Ci~~~~~~ 67 (267)
.||++|+..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 121
>PF14353 CpXC: CpXC protein
Probab=59.52 E-value=6.9 Score=30.02 Aligned_cols=43 Identities=19% Similarity=0.473 Sum_probs=26.2
Q ss_pred cceeccccccccc-------CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG-------GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~-------~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+++||.|...|.. .+.+|- =..+... .+-..+.||.|+....+
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~-----------l~e~il~---g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPE-----------LKEKILD---GSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHH-----------HHHHHHc---CCcCEEECCCCCCceec
Confidence 3789999988872 223331 1122222 22457899999998875
No 122
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=59.04 E-value=5.9 Score=24.42 Aligned_cols=43 Identities=19% Similarity=0.552 Sum_probs=18.1
Q ss_pred ecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 33 C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
|.+|+++...+.+-| .-.|+-.+=..|+..++..+ ....||.|
T Consensus 1 C~~C~~iv~~G~~C~-~~~C~~r~H~~C~~~y~r~~----~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCS-NRDCNVRLHDDCFKKYFRHR----SNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-S-S--S--EE-HHHHHHHTTT-----SS-B-TTT
T ss_pred CcccchhHeeeccCC-CCccCchHHHHHHHHHHhcC----CCCCCcCC
Confidence 556666665211111 01255445567888888853 23389987
No 123
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.76 E-value=9.2 Score=34.96 Aligned_cols=35 Identities=34% Similarity=0.816 Sum_probs=25.7
Q ss_pred CCCHHHHhhHHHHHHhccC-------CCCccccCCCCceeec
Q psy11858 52 CSHTVCLHCLSRIAASQTR-------ETGTLRCPICREQITI 86 (267)
Q Consensus 52 C~HsfC~~Ci~~~~~~~~~-------~~~~~~CP~C~~~~~~ 86 (267)
|.--.|..|+.+|+..... -++...||.||+.+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4445589999999876321 1467899999999874
No 124
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.42 E-value=52 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 161 SIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 161 ~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.++....++.|..+++.+..++++..+..+.++....++...+.....++
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444555555555555555555555544444444444444444444433
No 125
>KOG0825|consensus
Probab=58.14 E-value=6.6 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=35.1
Q ss_pred cceecccccccccCCCCceecC---CCCHHHHhhHHHHHHhccCCCCccccCCCCcee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLP---CSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~---C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~ 84 (267)
.-+|.+|...|..+.----+++ |+|.||..||..|..+-......-.|++|..-+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4677778777762000112334 999999999999887643334456677776544
No 126
>KOG2264|consensus
Probab=57.79 E-value=71 Score=31.11 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccCCCccccCCCccCCCCCchhHHHHHHHHHHHHhCCCCCCCccc-cc
Q psy11858 177 ECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQTPPLFSHGLSPLSLPDSSHALLITRRAYVRRRGAHTQTPPLF-SH 255 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~r~~y~~~~~~~~~~~~~~-~~ 255 (267)
++..+.++++..++++....+++++.|-..+.++. .+...+.++..+|..- .+|++|-+| |-
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~---------------~Lk~~ieqaq~~~~El--~~~n~pkl~LP~ 159 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELS---------------ALKGEIEQAQRQLEEL--RETNNPKLFLPF 159 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH---------------HHHhHHHHHHHHHHHH--HhhcCCceeecc
Confidence 44444444555555555555555555544444432 1112233333444332 356778776 55
Q ss_pred CCCCCCCCC
Q psy11858 256 GLSPLSLPD 264 (267)
Q Consensus 256 ~~~~~~~~~ 264 (267)
++-|+.+|.
T Consensus 160 sllP~~~pr 168 (907)
T KOG2264|consen 160 SLLPLQIPR 168 (907)
T ss_pred ccCcccCcc
Confidence 667777764
No 127
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=57.66 E-value=12 Score=25.78 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=22.5
Q ss_pred ccccccccc----ccccccccCCCCCCCCCCCCCceee
Q psy11858 126 LLFCETCDT----VFCLQCTGGSNHSSTSGDSEHTIIP 159 (267)
Q Consensus 126 ~~fC~~C~~----~iC~~C~~~~~H~~~~~~~~H~~~~ 159 (267)
.|.|.+|.. .+|..|.....|. ||.+..
T Consensus 13 ~y~C~tC~~~~~~~iC~~Cf~~~~H~------gH~~~~ 44 (71)
T smart00396 13 IYRCKTCGLDPTCVLCSDCFRSNCHK------GHDYSL 44 (71)
T ss_pred EEECcCCCCCCCEeEChHHCCCCCCC------CCCEEE
Confidence 488999874 7999999955799 998654
No 128
>KOG0826|consensus
Probab=56.73 E-value=6.6 Score=35.16 Aligned_cols=50 Identities=18% Similarity=0.417 Sum_probs=38.2
Q ss_pred cccccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 26 FNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
...+.-.||+|.+.-. .|-.+. =|=.||..|+-.+.... -.||.-+.+..
T Consensus 296 l~~~~~~CpvClk~r~----Nptvl~vSGyVfCY~Ci~~Yv~~~------~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQ----NPTVLEVSGYVFCYPCIFSYVVNY------GHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccC----CCceEEecceEEeHHHHHHHHHhc------CCCCccCCcch
Confidence 3334567999999888 887776 49999999999888743 47998666554
No 129
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=56.68 E-value=3.2 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.633 Sum_probs=23.0
Q ss_pred ccccccccccc----ccccccccCCCCCCCCCCCCCceeeH
Q psy11858 124 QELLFCETCDT----VFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 124 ~~~~fC~~C~~----~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
+..|.|.+|.. .||..|.....|. ||.+..+
T Consensus 11 q~~y~C~tC~~~~~~~iC~~CF~~~~H~------gH~~~~~ 45 (71)
T PF02207_consen 11 QIFYRCLTCSLDESSGICEECFANSCHE------GHRVVYY 45 (71)
T ss_dssp -EEEEETTTBSSTT-BBEHHHHCTSGGG------GSSEEEE
T ss_pred CEEEECccCCCCCCEEEchhhCCCCCcC------CCcEEEE
Confidence 44588999875 8999994444699 9998754
No 130
>PLN02189 cellulose synthase
Probab=54.95 E-value=6.3 Score=40.72 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=36.5
Q ss_pred ceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-+|.||.+.... .+-+|..- .|+=..|+.|.+ +-.. .+...||.|+..+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~----eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERR----EGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhh----cCCccCcccCCchhh
Confidence 589999998763 22245432 488889999994 3322 467899999999873
No 131
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=54.63 E-value=9.1 Score=24.93 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=9.0
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.-.|++|.+.|.
T Consensus 5 ~~~C~~Cg~~~~ 16 (54)
T PF14446_consen 5 GCKCPVCGKKFK 16 (54)
T ss_pred CccChhhCCccc
Confidence 467888888883
No 132
>smart00035 CLa CLUSTERIN alpha chain.
Probab=54.01 E-value=62 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.806 Sum_probs=12.6
Q ss_pred ccccccccccccccccC
Q psy11858 127 LFCETCDTVFCLQCTGG 143 (267)
Q Consensus 127 ~fC~~C~~~iC~~C~~~ 143 (267)
--|+.|+..+=..|...
T Consensus 73 dqCEKCqeiLsvDCs~~ 89 (216)
T smart00035 73 DQCEKCQEILSVDCSTN 89 (216)
T ss_pred HHHHHHHHHHhhhccCC
Confidence 34888888888888654
No 133
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=53.87 E-value=15 Score=21.67 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.8
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
++||-|...|.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 67888888887
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.61 E-value=4.6 Score=22.08 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.6
Q ss_pred eccccccc
Q psy11858 33 CGTCLCMY 40 (267)
Q Consensus 33 C~iC~~~~ 40 (267)
||.|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 44454433
No 135
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.54 E-value=67 Score=23.89 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 164 IKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 164 ~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
..+....+...++.+...++.+++.+..+.....++..+++++.
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555657777777777777777777777777777654
No 136
>KOG4445|consensus
Probab=53.15 E-value=7.5 Score=34.43 Aligned_cols=59 Identities=29% Similarity=0.636 Sum_probs=39.5
Q ss_pred cceecccccccccCCCCc-ee-cCCCCHHHHhhHHHHHHh-----------------ccCCCCccccCCCCceeecCCCC
Q psy11858 30 FLTCGTCLCMYDGGEHTP-KL-LPCSHTVCLHCLSRIAAS-----------------QTRETGTLRCPICREQITIPRGG 90 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P-~~-L~C~HsfC~~Ci~~~~~~-----------------~~~~~~~~~CP~C~~~~~~~~~~ 90 (267)
...|.||+--|.+ .| ++ .+|.|.|=..|+.+++.. ...+.....||+|+..+.....+
T Consensus 115 ~gqCvICLygfa~---~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 115 NGQCVICLYGFAS---SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCceEEEEEeecC---CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 4679999888874 44 33 479999988898766533 01122345699999988754444
Q ss_pred C
Q psy11858 91 V 91 (267)
Q Consensus 91 v 91 (267)
+
T Consensus 192 l 192 (368)
T KOG4445|consen 192 L 192 (368)
T ss_pred e
Confidence 4
No 137
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=52.65 E-value=25 Score=28.27 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=35.8
Q ss_pred ccceecccccccccCCCCceecCCC--C---HHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS--H---TVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~--H---sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
.+-.|=||++..+ +..-||. . ..=..|+++|... ++...|+.|+.++...
T Consensus 7 ~~~~CRIC~~~~~-----~~~~PC~CkGs~k~VH~sCL~rWi~~----s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD-----VVTNYCNCKNENKIVHKECLEEWINT----SKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC-----CccCCcccCCCchHHHHHHHHHHHhc----CCCCcccccCCeEEEE
Confidence 3678999976643 2234543 3 3368899999985 4678999999999853
No 138
>KOG2231|consensus
Probab=52.57 E-value=11 Score=37.18 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=38.7
Q ss_pred eecccccccccCCCCceecCCCC-HHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCSH-TVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~H-sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.|+||-.-++ -+..-.||| -.|..|..+.............||.|+..+..
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 5899988887 666778999 99999998776654323346778999997653
No 139
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=52.37 E-value=30 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHH
Q psy11858 166 RMSEILLYKANECVSKNKVCPERKSNLRPSAHKAD 200 (267)
Q Consensus 166 ~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~ 200 (267)
+.++.|+..-..+.+++..+.+.+..++.....+.
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666655544443
No 140
>KOG3053|consensus
Probab=51.27 E-value=27 Score=30.33 Aligned_cols=60 Identities=25% Similarity=0.471 Sum_probs=39.7
Q ss_pred ccccceecccccccccCCCCceecCCC-----CHHHHhhHHHHHHhc--cCCCCccccCCCCceeec
Q psy11858 27 NESFLTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQ--TRETGTLRCPICREQITI 86 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~r~P~~L~C~-----HsfC~~Ci~~~~~~~--~~~~~~~~CP~C~~~~~~ 86 (267)
.+.+-.|=||+..-.+..+..-.-||. |=.=..|+..|.... +.....+.||+|+..+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 344678999976555322222334664 344578999988764 334568999999999873
No 141
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=50.71 E-value=1.1e+02 Score=25.19 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 160 FSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 160 l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
..+...++++.+....+....-++..++.+.+.+...+++..++.+....|+
T Consensus 119 C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 119 CAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655555555555555555555555666666666655553
No 142
>KOG3039|consensus
Probab=50.38 E-value=9.6 Score=32.82 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.2
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHH
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIA 65 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~ 65 (267)
+++--|.+|++.+. +|++-+=||.||+.||-+++
T Consensus 41 K~FdcCsLtLqPc~----dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCR----DPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeeccccc----CCccCCCCeeeeHHHHHHHH
Confidence 33567999999998 99999999999999996544
No 143
>KOG2034|consensus
Probab=49.80 E-value=10 Score=38.44 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.6
Q ss_pred cceecccccccccCCCCceec-CCCCHHHHhhHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAA 66 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~ 66 (267)
.-+|.+|...+.. .|..+ ||||.|=..|+.+...
T Consensus 817 ~d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 817 QDSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ccchHHhcchhhc---CcceeeeccchHHHHHHHHHHH
Confidence 4579999988863 68664 9999999999987654
No 144
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.77 E-value=73 Score=21.02 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
.|+..++..-...+..+...+..+......+......+...+.....
T Consensus 15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777777777777777766666666655543
No 145
>KOG4367|consensus
Probab=49.27 E-value=30 Score=32.34 Aligned_cols=42 Identities=24% Similarity=0.659 Sum_probs=28.9
Q ss_pred CCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeH
Q psy11858 118 CSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 118 C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
|...++....||++|..+.|.-|.... |-+.+--..|.+++.
T Consensus 168 ce~a~k~a~v~ceqcdv~yc~pc~~~~-hp~rgplakh~l~~~ 209 (699)
T KOG4367|consen 168 CEKAPKEATVMCEQCDVFYCDPCRLRC-HPPRGPLAKHRLVPP 209 (699)
T ss_pred hcCChhhhhhhHhhCceEEechHHhcc-CCCCCchhhcccCCc
Confidence 444555555999999999999999875 654443345555443
No 146
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.99 E-value=77 Score=20.72 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=11.1
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHHHH
Q psy11858 177 ECVSKNKVCPERKSNLRPSAHKADAYV 203 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~~~~~~~~~i 203 (267)
.+...+..++...+++....+++.+.+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 147
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.82 E-value=9.3 Score=29.46 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=9.1
Q ss_pred CccccCCCCceee
Q psy11858 73 GTLRCPICREQIT 85 (267)
Q Consensus 73 ~~~~CP~C~~~~~ 85 (267)
..+.||.|+..+.
T Consensus 25 ~p~vcP~cg~~~~ 37 (129)
T TIGR02300 25 RPAVSPYTGEQFP 37 (129)
T ss_pred CCccCCCcCCccC
Confidence 4567888877765
No 148
>PLN02195 cellulose synthase A
Probab=47.78 E-value=15 Score=37.90 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=37.5
Q ss_pred cceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|-||.+.... .+-+|..- .|+-..|+.|.+ +-.. .+...||.|+..+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~----eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIK----EGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhh----cCCccCCccCCccc
Confidence 4589999987763 33355543 688899999994 3332 46789999999998
No 149
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.50 E-value=94 Score=23.65 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 165 KRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 165 ~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
.+.++.+..+++.+...++.+++....+.....+...++++....
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555777777777777777777777777777776654
No 150
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.59 E-value=41 Score=34.97 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCCCCc--cccccccccc----ccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 117 KCSTHNSQ--ELLFCETCDT----VFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 117 ~C~~H~~~--~~~fC~~C~~----~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
.|+.++.. ..+||..|+. ..|..|-....-. ....+.+.+.+....+.+.
T Consensus 640 rCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~------s~~~i~l~~~~~~A~~~lg 695 (1121)
T PRK04023 640 RCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPY------SKRKIDLKELYDRALENLG 695 (1121)
T ss_pred cCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCcc------ceEEecHHHHHHHHHHHhC
Confidence 45555433 3477777765 4577786653222 4556677777666666554
No 151
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.54 E-value=95 Score=22.79 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy11858 166 RMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRR 206 (267)
Q Consensus 166 ~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~ 206 (267)
+....|...++.+...++.+...+..+.+...++...+++.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666666654
No 152
>KOG1853|consensus
Probab=46.37 E-value=89 Score=27.16 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=6.6
Q ss_pred CCCCCCCCC
Q psy11858 257 LSPLSLPDS 265 (267)
Q Consensus 257 ~~~~~~~~~ 265 (267)
-.|+||||.
T Consensus 208 qa~~slP~t 216 (333)
T KOG1853|consen 208 QAPESLPDT 216 (333)
T ss_pred cCcccCCCC
Confidence 468888874
No 153
>KOG1729|consensus
Probab=46.34 E-value=3.3 Score=36.66 Aligned_cols=57 Identities=21% Similarity=0.410 Sum_probs=38.4
Q ss_pred ccceeccccc-ccccCCCCceecCCCCHHHHhhHHHHHHhc-cCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQ-TRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~-~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~-~~~~~~~~CP~C~~~~~ 85 (267)
+...|.+|.. .|....|.-.--.||+.||..|-....... ...+....|+.|=..+.
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 4688999999 776555555566799999999976532221 12233348888877765
No 154
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=46.28 E-value=34 Score=36.36 Aligned_cols=50 Identities=14% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCCCCCCcc--cccccccccc---------cccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 117 KCSTHNSQE--LLFCETCDTV---------FCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 117 ~C~~H~~~~--~~fC~~C~~~---------iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
+|+.++... .+.|..|+.. .|..|-....-. ....+.+.+.+....+.+.
T Consensus 681 fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~------~~~~i~~~~~~~~A~~~~g 741 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY------QRRTINVKEEYRSALENVG 741 (1337)
T ss_pred cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc------ceEEecHHHHHHHHHHHhC
Confidence 666666554 3789999874 699996542112 3445666666665555553
No 155
>KOG1952|consensus
Probab=46.09 E-value=18 Score=36.54 Aligned_cols=59 Identities=22% Similarity=0.487 Sum_probs=43.0
Q ss_pred ccccccceecccccccccCCCCceec--CCCCHHHHhhHHHHHHhc-cCCCCccccCCCCceee
Q psy11858 25 DFNESFLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQ-TRETGTLRCPICREQIT 85 (267)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~r~P~~L--~C~HsfC~~Ci~~~~~~~-~~~~~~~~CP~C~~~~~ 85 (267)
.+..+.+.|.||.+.... ..|+-- .|-|.|=..||..|.... ..+.....||.|+....
T Consensus 186 ~l~~~~yeCmIC~e~I~~--t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKR--TAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HHhcCceEEEEeeeeccc--cCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 355568999999988762 244432 588999999999988763 22357899999995544
No 156
>PF15616 TerY-C: TerY-C metal binding domain
Probab=45.87 E-value=8.5 Score=29.94 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=33.2
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
.-.||-|.+.+. -.+-.||+.+|. .+...+.||-|.......
T Consensus 77 ~PgCP~CGn~~~-----fa~C~CGkl~Ci-----------~g~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 77 APGCPHCGNQYA-----FAVCGCGKLFCI-----------DGEGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCCCcChhc-----EEEecCCCEEEe-----------CCCCCEECCCCCCeeeec
Confidence 478999999885 345589999886 345689999999988753
No 157
>PLN02436 cellulose synthase A
Probab=44.38 E-value=14 Score=38.46 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=36.8
Q ss_pred ceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-+|.||.+.... .+-+|..- .|+=..|+.|.+ +-.. .+...||.|+..+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~----eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERR----EGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhh----cCCccCcccCCchhh
Confidence 489999998763 22355442 588889999994 3222 467899999999873
No 158
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.16 E-value=16 Score=38.00 Aligned_cols=51 Identities=22% Similarity=0.497 Sum_probs=37.1
Q ss_pred cceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-+|-||.+.... .+-+|..- .|+=..|+.|.+ +-.. .+...||.|+..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~----eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERK----DGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhh----cCCccCCccCCchh
Confidence 3589999988763 23355443 688889999994 3332 46789999999987
No 159
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=44.04 E-value=5.7 Score=30.20 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=32.3
Q ss_pred cceecccccccccCC-CCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCcee
Q psy11858 30 FLTCGTCLCMYDGGE-HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~-r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~ 84 (267)
.-.|.+|...|..-. +.-+-..|.|.+|..|-.. ........|..|.+..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-----~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-----SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-----TSSSCCEEEHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-----CCCCCCEEChhhHHHH
Confidence 579999999886432 3334457999999999643 1224567788877643
No 160
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=43.13 E-value=27 Score=20.44 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=9.8
Q ss_pred CccccCCCCceee
Q psy11858 73 GTLRCPICREQIT 85 (267)
Q Consensus 73 ~~~~CP~C~~~~~ 85 (267)
..+.||.|+..+.
T Consensus 24 ~~v~C~~C~~~~~ 36 (38)
T TIGR02098 24 GKVRCGKCGHVWY 36 (38)
T ss_pred CEEECCCCCCEEE
Confidence 4688888887764
No 161
>KOG3899|consensus
Probab=42.31 E-value=23 Score=31.34 Aligned_cols=35 Identities=31% Similarity=0.821 Sum_probs=25.4
Q ss_pred CCCHHHHhhHHHHHHhccCC-------CCccccCCCCceeec
Q psy11858 52 CSHTVCLHCLSRIAASQTRE-------TGTLRCPICREQITI 86 (267)
Q Consensus 52 C~HsfC~~Ci~~~~~~~~~~-------~~~~~CP~C~~~~~~ 86 (267)
|.--.|..|+.+++....++ .+.-.||.|++.+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44566889999888653221 357899999998874
No 162
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.11 E-value=1.5e+02 Score=22.34 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 168 SEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 168 ~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
++.|...+..+.+.++......++++....+..++++..+.+
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555544443
No 163
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.61 E-value=19 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=8.2
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
..|.+|.-+++
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 46888887775
No 164
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=41.19 E-value=27 Score=21.45 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=21.7
Q ss_pred cccccc-ccccccccccCCCCCCCCCCCCCceee
Q psy11858 127 LFCETC-DTVFCLQCTGGSNHSSTSGDSEHTIIP 159 (267)
Q Consensus 127 ~fC~~C-~~~iC~~C~~~~~H~~~~~~~~H~~~~ 159 (267)
|-|.+| +.-+|..|.....|. .|.++.
T Consensus 15 y~C~~C~d~dLC~~C~~~~~H~------~H~f~~ 42 (43)
T cd02340 15 YKCLVCPDYDLCESCEAKGVHP------EHAMLK 42 (43)
T ss_pred EECCCCCCccchHHhhCcCCCC------CCCEEe
Confidence 779998 678999998776686 888764
No 165
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.14 E-value=29 Score=35.08 Aligned_cols=57 Identities=25% Similarity=0.497 Sum_probs=42.5
Q ss_pred ccccccceecccccccccCCCCceecCCCC-----HHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSH-----TVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 25 ~~~~~~l~C~iC~~~~~~~~r~P~~L~C~H-----sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
.+++|.-+|-||...=-. -+|..-||.- ..=+.|+.+|... ++...|..|+.++..+
T Consensus 7 ~mN~d~~~CRICr~e~~~--d~pLfhPCKC~GSIkYiH~eCL~eW~~~----s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIR--DDPLFHPCKCSGSIKYIHRECLMEWMEC----SGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCCccchhceeecCCCCC--CCcCcccccccchhHHHHHHHHHHHHhc----CCCcceeeecceeeee
Confidence 466678999999843221 1888888763 3457899999986 5788999999998753
No 166
>smart00338 BRLZ basic region leucin zipper.
Probab=41.05 E-value=1e+02 Score=20.30 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
+|+...++.-...+..+...+..+......+......+...+......
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666555443
No 167
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.05 E-value=1.2e+02 Score=21.88 Aligned_cols=41 Identities=10% Similarity=-0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 167 MSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 167 ~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
..+.|....+.+...+..+...+..+.....++...+...+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444446666666666666666666666666655544
No 168
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.60 E-value=25 Score=36.40 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred ccccccccCccchhcccC-CccccccccceecccccccccCCCCceecCCCC-----HHHHhhHHHHHHhccCCCCcccc
Q psy11858 4 SMSSTLSTNSTLVETVSI-NYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSH-----TVCLHCLSRIAASQTRETGTLRC 77 (267)
Q Consensus 4 ~~~~~~~~~~~~~~~~s~-~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~H-----sfC~~Ci~~~~~~~~~~~~~~~C 77 (267)
|--.+++...-+.+.+.. -.-......-.|+-|..... ...--.||. .||..|-. ......|
T Consensus 599 PiG~~GG~~R~i~~A~~~~g~~eVEVg~RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~CG~--------~~~~y~C 666 (1121)
T PRK04023 599 PIGNAGGSTRDINKAAKYKGTIEVEIGRRKCPSCGKETF----YRRCPFCGTHTEPVYRCPRCGI--------EVEEDEC 666 (1121)
T ss_pred cccccCcccccHHHHHhcCCceeecccCccCCCCCCcCC----cccCCCCCCCCCcceeCccccC--------cCCCCcC
Confidence 334455555555555542 22223334668999988754 333334885 58999932 1345679
Q ss_pred CCCCceee
Q psy11858 78 PICREQIT 85 (267)
Q Consensus 78 P~C~~~~~ 85 (267)
|.|.....
T Consensus 667 PKCG~El~ 674 (1121)
T PRK04023 667 EKCGREPT 674 (1121)
T ss_pred CCCCCCCC
Confidence 99999886
No 169
>KOG2169|consensus
Probab=39.57 E-value=25 Score=34.92 Aligned_cols=66 Identities=20% Similarity=0.403 Sum_probs=41.4
Q ss_pred cceecccccccccCCCCc-eecCCCCHHHHhhHHHHHHh-ccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAAS-QTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P-~~L~C~HsfC~~Ci~~~~~~-~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
.|.|++++.... -| +...|.|- .|....|.. .........||.|.+.... ..|.....+..++...
T Consensus 306 SL~CPl~~~Rm~----~P~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~-----e~l~iD~~~~~iL~~~ 373 (636)
T KOG2169|consen 306 SLNCPLSKMRMS----LPARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPF-----EGLIIDGYFLNILQSC 373 (636)
T ss_pred EecCCcccceee----cCCcccccccc---eecchhhhHHhccCCCeeeCccCCccccc-----cchhhhHHHHHHHhhc
Confidence 689999976665 33 44567774 555443322 2345678999999999886 3445555555555443
No 170
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=39.27 E-value=8 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=15.8
Q ss_pred ccCCccccccccceecccccccc
Q psy11858 19 VSINYEDFNESFLTCGTCLCMYD 41 (267)
Q Consensus 19 ~s~~~~~~~~~~l~C~iC~~~~~ 41 (267)
+++..-.-+.++|+|..|+.+-.
T Consensus 59 L~V~ViP~q~DEFTCssCFLV~H 81 (99)
T PF13834_consen 59 LSVRVIPKQADEFTCSSCFLVHH 81 (99)
T ss_pred EEEEEecCCCCceeeeeeeeEec
Confidence 34444445667999999987665
No 171
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=1.8e+02 Score=22.26 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 165 KRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 165 ~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
.+....|..+.+.+.-+++.++..-+.+....+++...|+.++.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555555555555555555544
No 172
>PF05614 DUF782: Circovirus protein of unknown function (DUF782); InterPro: IPR008500 This family consists of porcine and bovine circovirus ORF3 proteins of unknown function.
Probab=38.53 E-value=2.1 Score=29.84 Aligned_cols=43 Identities=28% Similarity=0.289 Sum_probs=33.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhCCCCCCCcc-----cccCCCCCCCCCC
Q psy11858 223 LSLPDSSHALLITRRAYVRRRGAHTQTPPL-----FSHGLSPLSLPDS 265 (267)
Q Consensus 223 ~~l~~~~~~~~~~r~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 265 (267)
+..+.-++-+.++.++|.--+-++-|+|++ ++...+||||-..
T Consensus 51 ahfqkfsqpaeisdkryrvllcnghqtpalqqgthssrqvtplslrsr 98 (104)
T PF05614_consen 51 AHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSR 98 (104)
T ss_pred HHHhhcCCchhhccceEEEEEECCCCChhHhccccccceecceeeecc
Confidence 445556677778888998888999999998 5667899998643
No 173
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.12 E-value=1.2e+02 Score=22.40 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=26.1
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy11858 158 IPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRR 206 (267)
Q Consensus 158 ~~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~ 206 (267)
.++++|.+.+. ++++.+...+..+.+.+..+......+...+++.
T Consensus 73 ~s~~eA~~~l~----~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 73 MSLEEAIEFLK----KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ecHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444 4444666666666666666666666666665554
No 174
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=37.85 E-value=10 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=28.5
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|.+|..... .| ||.||..|.-. . -.|..|...+.
T Consensus 44 ~~~C~~CK~~v~----q~-----g~~YCq~CAYk--k--------GiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVH----QP-----GAKYCQTCAYK--K--------GICAMCGKKIL 80 (90)
T ss_pred Cccccccccccc----cC-----CCccChhhhcc--c--------CcccccCCeec
Confidence 458999988776 55 88999999631 1 37999999874
No 175
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.80 E-value=1.2e+02 Score=20.60 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=14.6
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 177 ECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
....+++...+++..++...+..+..+......
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~ 42 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQ 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333
No 176
>KOG1815|consensus
Probab=37.77 E-value=1.1e+02 Score=28.94 Aligned_cols=80 Identities=19% Similarity=0.485 Sum_probs=44.6
Q ss_pred CceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q psy11858 46 TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQE 125 (267)
Q Consensus 46 ~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~~~~~~~~~~C~~H~~~~ 125 (267)
.++.-.|||.||..|...+.. ...|+....-...... -...+. ....+..+.+.|....+..
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~-------p~~C~~~~~wl~k~~~----------~se~~~-wi~~ntk~CP~c~~~iek~ 239 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHS-------PVSCPGAKKWLKKCRD----------DSETIN-WILANTKECPKCKVPIEKD 239 (444)
T ss_pred cceeCCCCchhHhhccccccC-------CCcccchHHHHHhhhh----------hhhhhh-hhhccCccCCCcccchhcc
Confidence 566678999999999765543 2467765544432100 000000 1122233456665543332
Q ss_pred ----cccccc--cccccccccccC
Q psy11858 126 ----LLFCET--CDTVFCLQCTGG 143 (267)
Q Consensus 126 ----~~fC~~--C~~~iC~~C~~~ 143 (267)
...|.. |...+|..|...
T Consensus 240 ~gc~~~~~~~~~c~~~FCw~Cl~~ 263 (444)
T KOG1815|consen 240 GGCNHMTCKSASCKHEFCWVCLAS 263 (444)
T ss_pred CCccccccccCCcCCeeceeeecc
Confidence 246776 999999999433
No 177
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.39 E-value=1e+02 Score=23.13 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy11858 168 SEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRR 206 (267)
Q Consensus 168 ~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~ 206 (267)
.+.+.++++.+...+..+++.+..+....+.+...++..
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555666666777777777776666666666543
No 178
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=37.09 E-value=1.1e+02 Score=19.31 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHH
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRP 194 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~ 194 (267)
++.-.++.+....++.+..++..+.++++.++.
T Consensus 12 Eslv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 12 ESLVAFQNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666665565565555555555555543
No 179
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.77 E-value=24 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.4
Q ss_pred CHHHHhhHHHHHHhc
Q psy11858 54 HTVCLHCLSRIAASQ 68 (267)
Q Consensus 54 HsfC~~Ci~~~~~~~ 68 (267)
-.||++|+..|....
T Consensus 41 AgFCRNCLs~Wy~ea 55 (104)
T COG3492 41 AGFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 369999999998753
No 180
>PLN02400 cellulose synthase
Probab=36.63 E-value=21 Score=37.32 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=37.5
Q ss_pred ceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-+|-||.+.... .+-+|... .|+=..|+.|.+ +-. ..+...||+|+..+..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YER----keGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YER----KDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhh-eec----ccCCccCcccCCcccc
Confidence 589999998763 33356543 688889999994 222 2467899999999974
No 181
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.32 E-value=1.4e+02 Score=20.34 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHh-HHHHHHHHHHHHHH
Q psy11858 165 KRMSEILLYKANECVSKNKVCPERKSN-LRPSAHKADAYVRR 205 (267)
Q Consensus 165 ~~~~e~l~~~~~~~~~~~~~~~e~l~~-l~~~~~~~~~~i~~ 205 (267)
.+.+++|....+.+.+....+.+.... +....++..+.+.+
T Consensus 25 ~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e 66 (74)
T PF12732_consen 25 KETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKE 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444333 33333333333333
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.30 E-value=1e+02 Score=23.75 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=28.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 159 PFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 159 ~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
++++|... +.+.++.+...+..+.+.+..+....+.+...+++...
T Consensus 91 ~~~eA~~~----l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEI----LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444 44444466667777777777777777777666666543
No 183
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.71 E-value=24 Score=36.70 Aligned_cols=52 Identities=25% Similarity=0.492 Sum_probs=37.6
Q ss_pred cceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-+|-||.+.... .+-+|..- .|+-..|+.|.+ +-.. .+...||.|+..+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~----~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERS----EGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhh----cCCccCCccCCchhh
Confidence 4689999988763 23355543 588889999994 3332 467899999999873
No 184
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.45 E-value=1.8e+02 Score=21.93 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy11858 167 MSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRR 206 (267)
Q Consensus 167 ~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~ 206 (267)
..+.+.++++.+.+.+..+++.+..+....+.+...++..
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555677777777777777777777776666553
No 185
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=1.4e+02 Score=23.66 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=28.8
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 158 IPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 158 ~~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
...++|.+.++ ++++.+...++.++..+..+......+.+.++.....
T Consensus 90 ~~~~eAie~l~----k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 90 KSADEAIEFLK----KRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred ecHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444 4444666666777777777777776666666655443
No 186
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.57 E-value=19 Score=21.18 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.9
Q ss_pred cccCCCCceeecCC
Q psy11858 75 LRCPICREQITIPR 88 (267)
Q Consensus 75 ~~CP~C~~~~~~~~ 88 (267)
+.||.|++.+.+++
T Consensus 3 i~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 3 ITCPNCQAKYEIDD 16 (36)
T ss_pred EECCCCCCEEeCCH
Confidence 68999999999753
No 187
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.20 E-value=1.2e+02 Score=23.93 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 165 KRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 165 ~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.+..+.+.++++.+......+.+.++++....+++...++...+.+
T Consensus 87 ~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 87 SEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666777777766666666665555554444
No 188
>PRK09039 hypothetical protein; Validated
Probab=33.13 E-value=1.7e+02 Score=26.64 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=7.6
Q ss_pred CCCcccccCCCCC
Q psy11858 248 QTPPLFSHGLSPL 260 (267)
Q Consensus 248 ~~~~~~~~~~~~~ 260 (267)
.+..||+.|-+=|
T Consensus 223 ~~~vlF~~gsa~L 235 (343)
T PRK09039 223 QSEVLFPTGSAEL 235 (343)
T ss_pred cCCceeCCCCccc
Confidence 4557777665433
No 189
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.67 E-value=2.8e+02 Score=24.30 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 172 LYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
..+++.+..++...++.+.++......+...|....+.|.
T Consensus 58 ~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 58 DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666666554
No 190
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=31.89 E-value=1.9e+02 Score=27.39 Aligned_cols=15 Identities=33% Similarity=1.196 Sum_probs=10.1
Q ss_pred ccccccccccccccC
Q psy11858 129 CETCDTVFCLQCTGG 143 (267)
Q Consensus 129 C~~C~~~iC~~C~~~ 143 (267)
|+.|+..+=..|...
T Consensus 289 CEKCqeiL~~DCs~~ 303 (436)
T PF01093_consen 289 CEKCQEILSVDCSGK 303 (436)
T ss_pred HHHHHHHHHHhcCCC
Confidence 777777777777544
No 191
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.83 E-value=46 Score=26.18 Aligned_cols=38 Identities=26% Similarity=0.582 Sum_probs=24.5
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+.||.|...|.. ....... ...+.|.||.|+.....
T Consensus 98 ~~Y~Cp~C~~~y~~------------------~ea~~~~--d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQSKYTF------------------LEANQLL--DMDGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcCCCCEeeH------------------HHHHHhc--CCCCcEECCCCCCEEEE
Confidence 37899999988861 1111110 11355999999999874
No 192
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=31.67 E-value=91 Score=26.66 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhC
Q psy11858 230 HALLITRRAYVRRRG 244 (267)
Q Consensus 230 ~~~~~~r~~y~~~~~ 244 (267)
.++.++|.+|..+++
T Consensus 180 ~aLiEER~Rfc~Fvs 194 (231)
T cd07643 180 NALIEERGRFCTFVS 194 (231)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355689999988765
No 193
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=31.61 E-value=71 Score=27.52 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC--CCccccCCCccCCCCC
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ--TPPLFSHGLSPLSLPD 227 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~--~~~~~~~~~~~~~l~~ 227 (267)
+-+...+.+|+.+++++..+..+..-++.-++.+...+.++.++++.-|. ++-+.+|+.....+-+
T Consensus 47 dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~RHg~~~~lLse 114 (277)
T PF15030_consen 47 DEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHRHGPANHLLSE 114 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34566788888888888888888888888888888889999888887652 1223445544444433
No 194
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=30.89 E-value=13 Score=18.90 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=9.3
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
+.|++|...|.
T Consensus 1 y~C~~C~~~f~ 11 (23)
T PF00096_consen 1 YKCPICGKSFS 11 (23)
T ss_dssp EEETTTTEEES
T ss_pred CCCCCCCCccC
Confidence 46999999987
No 195
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.04 E-value=2.6e+02 Score=21.57 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHH
Q psy11858 160 FSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHK 198 (267)
Q Consensus 160 l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~ 198 (267)
+..|....-++|...-+.+....+.+..++..+....++
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345555555555554444444444555555544444433
No 196
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.84 E-value=1.8e+02 Score=25.56 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 168 SEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 168 ~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.+.|+..+......++..+..+..+......+..+|+++..++
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666667777777777777777777777777766
No 197
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.70 E-value=1.3e+02 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHH
Q psy11858 164 IKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVR 204 (267)
Q Consensus 164 ~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~ 204 (267)
..+..+.+..+++.+...++.+.+.+..+....+.+...++
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555556666666666666666666655555443
No 198
>KOG2391|consensus
Probab=29.68 E-value=2.3e+02 Score=25.77 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHhhh
Q psy11858 191 NLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 191 ~l~~~~~~~~~~i~~~~~ 208 (267)
+++.+++.+++++.....
T Consensus 250 kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQK 267 (365)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 199
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.62 E-value=67 Score=27.92 Aligned_cols=81 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCCCCccc-ccccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHHHHHH-----------HHHHhhhh
Q psy11858 117 KCSTHNSQEL-LFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKAN-----------ECVSKNKV 184 (267)
Q Consensus 117 ~C~~H~~~~~-~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~~~~~-----------~~~~~~~~ 184 (267)
.|+.+..... +||..|-.- .+. .. ...+..+....+..+.++...++ .....+..
T Consensus 1 ~C~iC~~~~~~~~C~~C~~~-----~L~--~~------~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 67 (302)
T PF10186_consen 1 QCPICHNSRRRFYCANCVNN-----RLL--EL------RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEE 67 (302)
T ss_pred CCCCCCCCCCCeECHHHHHH-----HHH--HH------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 185 CPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 185 ~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.+.++..++...+.....+....+.+
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 200
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=29.61 E-value=2.1e+02 Score=20.37 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 175 ANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 175 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+..+...+..-.+.+.++++.++.+...|+..+..+
T Consensus 45 l~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 45 LAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555566666777777777666655
No 201
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=29.60 E-value=1.9e+02 Score=26.71 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=8.0
Q ss_pred HHhCCCCCCCccc
Q psy11858 241 RRRGAHTQTPPLF 253 (267)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (267)
+++++-++||.+-
T Consensus 300 TRL~~R~~RP~vE 312 (384)
T PF03148_consen 300 TRLENRTQRPNVE 312 (384)
T ss_pred HHHhhHhcCCchH
Confidence 3566667777653
No 202
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=29.44 E-value=25 Score=20.13 Aligned_cols=15 Identities=27% Similarity=0.944 Sum_probs=12.3
Q ss_pred ccccccccccccccc
Q psy11858 125 ELLFCETCDTVFCLQ 139 (267)
Q Consensus 125 ~~~fC~~C~~~iC~~ 139 (267)
..|+|..|+.++|..
T Consensus 15 T~~~C~~C~v~lC~~ 29 (32)
T PF13842_consen 15 TRYMCSKCDVPLCVE 29 (32)
T ss_pred eEEEccCCCCcccCC
Confidence 349999999999874
No 203
>PF12773 DZR: Double zinc ribbon
Probab=29.27 E-value=19 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.567 Sum_probs=16.8
Q ss_pred CHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 54 HTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 54 HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
-.||..|-..... .......||.|.....
T Consensus 12 ~~fC~~CG~~l~~---~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPP---PDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhh---ccCCCCCCcCCcCCCc
Confidence 4566666554441 1235677888887654
No 204
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.00 E-value=1.7e+02 Score=19.17 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+|...+..+..++..+...+..+.........+..+..+.|
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556666555555555555555555444433
No 205
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=28.72 E-value=40 Score=33.48 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=8.1
Q ss_pred cccCCCCceee
Q psy11858 75 LRCPICREQIT 85 (267)
Q Consensus 75 ~~CP~C~~~~~ 85 (267)
..||.|+....
T Consensus 2 ~~Cp~Cg~~n~ 12 (645)
T PRK14559 2 LICPQCQFENP 12 (645)
T ss_pred CcCCCCCCcCC
Confidence 46888888764
No 206
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=28.52 E-value=25 Score=21.11 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=6.5
Q ss_pred ceecC-CCCHHHH
Q psy11858 47 PKLLP-CSHTVCL 58 (267)
Q Consensus 47 P~~L~-C~HsfC~ 58 (267)
|..-. |+..||.
T Consensus 12 ~f~C~~C~~~FC~ 24 (39)
T smart00154 12 GFKCRHCGNLFCG 24 (39)
T ss_pred CeECCccCCcccc
Confidence 44444 6666665
No 207
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=28.04 E-value=40 Score=19.79 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHhccC--CCCccccCCCCceee
Q psy11858 56 VCLHCLSRIAASQTR--ETGTLRCPICREQIT 85 (267)
Q Consensus 56 fC~~Ci~~~~~~~~~--~~~~~~CP~C~~~~~ 85 (267)
+|..|++++...... ....+.|+.|+-.+.
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 477777766554221 135788999986554
No 208
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.91 E-value=2e+02 Score=20.50 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHH
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKA 199 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~ 199 (267)
+|...+.....++...+.+++.++..+.+.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666555543
No 209
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.87 E-value=1.9e+02 Score=19.41 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
.++..++.+......++..++.+....+.++..+++...-++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~ 69 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVK 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcC
Confidence 344444455555555555555554455555555555544443
No 210
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.64 E-value=53 Score=21.76 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=8.9
Q ss_pred CCccccCCCCc
Q psy11858 72 TGTLRCPICRE 82 (267)
Q Consensus 72 ~~~~~CP~C~~ 82 (267)
+..+.||.|..
T Consensus 46 ~~~Y~CP~CGF 56 (59)
T PRK14890 46 SNPYTCPKCGF 56 (59)
T ss_pred CCceECCCCCC
Confidence 57799999975
No 211
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.35 E-value=44 Score=19.31 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=8.2
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
..|.+|..++.
T Consensus 3 ~~C~~CG~i~~ 13 (34)
T cd00729 3 WVCPVCGYIHE 13 (34)
T ss_pred EECCCCCCEeE
Confidence 57888887765
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.04 E-value=2e+02 Score=24.70 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhC
Q psy11858 231 ALLITRRAYVRRRG 244 (267)
Q Consensus 231 ~~~~~r~~y~~~~~ 244 (267)
+...+|..-+.++.
T Consensus 124 f~~~eR~~Rl~~L~ 137 (251)
T PF11932_consen 124 FLLEERQERLARLR 137 (251)
T ss_pred CChHHHHHHHHHHH
Confidence 33344444444433
No 213
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.93 E-value=3.2e+02 Score=22.36 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=14.7
Q ss_pred HHHHHHhCCCCCCCccc------ccCCCC
Q psy11858 237 RAYVRRRGAHTQTPPLF------SHGLSP 259 (267)
Q Consensus 237 ~~y~~~~~~~~~~~~~~------~~~~~~ 259 (267)
=.|-++.+..|--|+-+ |.+|.|
T Consensus 87 L~YA~rISk~t~~p~~~~~~~~~P~~~~~ 115 (188)
T PF10018_consen 87 LSYAHRISKFTSAPPTFPSGSIAPNNWQP 115 (188)
T ss_pred HHHHHHHHHhcCCCCCCCCCCcCCccccc
Confidence 35677777777777655 556653
No 214
>PF15441 ARHGEF5_35: Rho guanine nucleotide exchange factor 5/35
Probab=26.66 E-value=45 Score=31.29 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=20.6
Q ss_pred HhCCCCCCCcccccCCC--CCCCCCC
Q psy11858 242 RRGAHTQTPPLFSHGLS--PLSLPDS 265 (267)
Q Consensus 242 ~~~~~~~~~~~~~~~~~--~~~~~~~ 265 (267)
.+...-++|++-|+||+ |.|+|+|
T Consensus 451 ELsp~al~p~lEp~~~s~Qp~s~p~s 476 (487)
T PF15441_consen 451 ELSPQALTPALEPIGWSHQPISLPGS 476 (487)
T ss_pred ccccccCCCCCCCCcccCCCCCCccc
Confidence 56677788999999998 7899987
No 215
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=26.24 E-value=95 Score=27.86 Aligned_cols=18 Identities=33% Similarity=0.792 Sum_probs=15.4
Q ss_pred cccccccccccccccccC
Q psy11858 126 LLFCETCDTVFCLQCTGG 143 (267)
Q Consensus 126 ~~fC~~C~~~iC~~C~~~ 143 (267)
.|-|+.|..-+|..|-..
T Consensus 388 rY~Ce~CK~~FC~dCdvf 405 (421)
T COG5151 388 RYQCELCKSTFCSDCDVF 405 (421)
T ss_pred ceechhhhhhhhhhhHHH
Confidence 378999999999999665
No 216
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=26.20 E-value=46 Score=21.36 Aligned_cols=25 Identities=28% Similarity=0.741 Sum_probs=12.8
Q ss_pred CCCCHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 51 PCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 51 ~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
.|++.||..|=.-.- ...-.||-|.
T Consensus 26 ~C~~~FC~dCD~fiH------E~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIH------ETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTT------TTS-SSSTT-
T ss_pred CCCCccccCcChhhh------ccccCCcCCC
Confidence 488889999943222 2456788874
No 217
>KOG3799|consensus
Probab=26.17 E-value=19 Score=28.05 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=26.8
Q ss_pred cccceecccccccccCCCCceecCCCC-------HHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSH-------TVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~H-------sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+..+|.||+..-.. | .||| -||.+|-.+.... +..-...|..|+....
T Consensus 63 ~ddatC~IC~KTKFA---D----G~GH~C~YCq~r~CARCGGrv~lr--sNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA---D----GCGHNCSYCQTRFCARCGGRVSLR--SNKVMWVCNLCRKQQE 118 (169)
T ss_pred CcCcchhhhhhcccc---c----ccCcccchhhhhHHHhcCCeeeec--cCceEEeccCCcHHHH
Confidence 347999999754321 2 3666 4555554332221 1234667887876653
No 218
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=26.03 E-value=22 Score=36.02 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCCCCCCCcc--cccccccccc----cccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 116 PKCSTHNSQE--LLFCETCDTV----FCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 116 ~~C~~H~~~~--~~fC~~C~~~----iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
..|+.++... .++|..|+.- .|..|-....-. .+..+.+.+.+....+.+.
T Consensus 668 ~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~~------~~~~i~l~~~~~~A~e~lg 724 (900)
T PF03833_consen 668 NRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTSY------SKQKIDLKEEYDRALENLG 724 (900)
T ss_dssp ---------------------------------------------------------------
T ss_pred hcCcccCCccccceeccccccccCccccccccccCccc------ceeecCHHHHHHHHHHhhc
Confidence 4555555432 3777777654 477775542122 3444555555544444443
No 219
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.94 E-value=42 Score=17.60 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=6.1
Q ss_pred ccccccccccc
Q psy11858 125 ELLFCETCDTV 135 (267)
Q Consensus 125 ~~~fC~~C~~~ 135 (267)
...||..|+..
T Consensus 12 ~~~fC~~CG~~ 22 (23)
T PF13240_consen 12 DAKFCPNCGTP 22 (23)
T ss_pred cCcchhhhCCc
Confidence 34666666543
No 220
>KOG1812|consensus
Probab=25.62 E-value=34 Score=31.70 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=27.5
Q ss_pred cceeccccccccc-CCCCceecCCCCHHHHhhHHHHHHh
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAAS 67 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L~C~HsfC~~Ci~~~~~~ 67 (267)
-..||+|...+.. ..-..++-.|||-||..|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 4679999877652 2244555579999999999887664
No 221
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=25.43 E-value=20 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=11.4
Q ss_pred CccccCCCCceeecC
Q psy11858 73 GTLRCPICREQITIP 87 (267)
Q Consensus 73 ~~~~CP~C~~~~~~~ 87 (267)
..+.||.|+......
T Consensus 19 ~~~vC~~Cg~~~~~~ 33 (52)
T smart00661 19 RRFVCRKCGYEEPIE 33 (52)
T ss_pred CEEECCcCCCeEECC
Confidence 368899999877654
No 222
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=25.43 E-value=19 Score=18.73 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=9.2
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
+.|.+|...|.
T Consensus 1 ~~C~~C~~~f~ 11 (25)
T PF12874_consen 1 FYCDICNKSFS 11 (25)
T ss_dssp EEETTTTEEES
T ss_pred CCCCCCCCCcC
Confidence 46999998887
No 223
>KOG4451|consensus
Probab=25.24 E-value=45 Score=28.40 Aligned_cols=26 Identities=31% Similarity=0.805 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 55 TVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 55 sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..|.+|-++... +...||.|+..+..
T Consensus 250 K~ClsChqqIHR------NAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 250 KVCLSCHQQIHR------NAPICPLCKAKSRS 275 (286)
T ss_pred hHHHHHHHHHhc------CCCCCcchhhcccc
Confidence 468999877665 56899999998863
No 224
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.21 E-value=2.1e+02 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=14.2
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 181 KNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 181 ~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.++.++.-++-++..+.+...-|++.|.+|
T Consensus 125 EIkQLkQvieTmrssL~ekDkGiQKYFvDI 154 (305)
T PF15290_consen 125 EIKQLKQVIETMRSSLAEKDKGIQKYFVDI 154 (305)
T ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHHhhh
Confidence 333333333334444444455566666655
No 225
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.14 E-value=3.7e+02 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=8.3
Q ss_pred hhhHHHHHhHHHHHHHHHHHHH
Q psy11858 183 KVCPERKSNLRPSAHKADAYVR 204 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~~~~~i~ 204 (267)
..+.+.+..++..++.+..-|.
T Consensus 128 ~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 226
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=35 Score=25.64 Aligned_cols=26 Identities=8% Similarity=-0.044 Sum_probs=15.6
Q ss_pred ceecccccccccCCCCceecC-CCCHH
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLP-CSHTV 56 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~-C~Hsf 56 (267)
-+||-|...|-+-+|+|+.-| ||.+|
T Consensus 10 ridPetg~KFYDLNrdPiVsPytG~s~ 36 (129)
T COG4530 10 RIDPETGKKFYDLNRDPIVSPYTGKSY 36 (129)
T ss_pred ccCccccchhhccCCCccccCcccccc
Confidence 456777766666666665544 55554
No 227
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=24.95 E-value=41 Score=17.95 Aligned_cols=15 Identities=20% Similarity=0.747 Sum_probs=11.9
Q ss_pred CCCccccCCCCceee
Q psy11858 71 ETGTLRCPICREQIT 85 (267)
Q Consensus 71 ~~~~~~CP~C~~~~~ 85 (267)
+...+.||.|...+.
T Consensus 11 ~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 11 GEKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSSEEESSSSEEES
T ss_pred CCCCCCCCCCcCeeC
Confidence 456799999998763
No 228
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.90 E-value=2.7e+02 Score=25.04 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=12.1
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 182 NKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 182 ~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+..++..+..+....+++..++.+...+|
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444
No 229
>KOG2462|consensus
Probab=24.44 E-value=27 Score=30.63 Aligned_cols=54 Identities=26% Similarity=0.533 Sum_probs=34.5
Q ss_pred cceecccccccccCCCCc--------eecCCCCHHHHhhHHHHHHhcc-----CCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTP--------KLLPCSHTVCLHCLSRIAASQT-----RETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P--------~~L~C~HsfC~~Ci~~~~~~~~-----~~~~~~~CP~C~~~~~~ 86 (267)
...|++|...|.. -| ..|+|.=.+|-+=+.+-|--|+ .+...|.||.|++.+.-
T Consensus 161 a~~C~~C~K~YvS---mpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 161 AFSCKYCGKVYVS---MPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccCCCCCceeee---hHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 4667777776652 11 2245655566666666555443 35679999999999873
No 230
>KOG1701|consensus
Probab=24.37 E-value=31 Score=32.20 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=22.9
Q ss_pred cceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
=|+|-+|++-+++ .|.+++ =+..+|..|.-+.+. ..|-.|...+-
T Consensus 360 CF~Cv~C~r~ldg---ipFtvd~~n~v~Cv~dfh~kfA--------PrCs~C~~PI~ 405 (468)
T KOG1701|consen 360 CFTCVVCARCLDG---IPFTVDSQNNVYCVPDFHKKFA--------PRCSVCGNPIL 405 (468)
T ss_pred ceEEEEeccccCC---ccccccCCCceeeehhhhhhcC--------cchhhccCCcc
Confidence 3556666666653 555554 222334444433322 46777766664
No 231
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=24.08 E-value=57 Score=18.01 Aligned_cols=14 Identities=29% Similarity=0.978 Sum_probs=7.0
Q ss_pred ccCCCCceeecCCC
Q psy11858 76 RCPICREQITIPRG 89 (267)
Q Consensus 76 ~CP~C~~~~~~~~~ 89 (267)
.||.|+..+....+
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 48999998875433
No 232
>PRK15396 murein lipoprotein; Provisional
Probab=23.89 E-value=2.6e+02 Score=19.60 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+|..+++.+..++..+...+..+........++..+.++.|
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555444
No 233
>PHA02047 phage lambda Rz1-like protein
Probab=23.74 E-value=3e+02 Score=20.19 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHH
Q psy11858 169 EILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRR 205 (267)
Q Consensus 169 e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~ 205 (267)
+.+..+++.+..++..+++.+..++...+...++|..
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~ 73 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDR 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444444433
No 234
>KOG2068|consensus
Probab=23.20 E-value=49 Score=29.79 Aligned_cols=50 Identities=30% Similarity=0.609 Sum_probs=34.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-.|++|.......+..-.=.+|++-.|.-|...... +...||.|+..+.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~------~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD------GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc------cCCCCCccCCccc
Confidence 3679999887743322223346999888888876554 5578999997665
No 235
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=23.02 E-value=35 Score=18.23 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=9.8
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
-..|++|...|.
T Consensus 2 l~~C~~CgR~F~ 13 (25)
T PF13913_consen 2 LVPCPICGRKFN 13 (25)
T ss_pred CCcCCCCCCEEC
Confidence 367999999886
No 236
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.99 E-value=68 Score=31.91 Aligned_cols=37 Identities=22% Similarity=0.636 Sum_probs=21.8
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.||-|..... + +..||..|-... ....||.|+....
T Consensus 2 ~~Cp~Cg~~n~----~------~akFC~~CG~~l--------~~~~Cp~CG~~~~ 38 (645)
T PRK14559 2 LICPQCQFENP----N------NNRFCQKCGTSL--------THKPCPQCGTEVP 38 (645)
T ss_pred CcCCCCCCcCC----C------CCccccccCCCC--------CCCcCCCCCCCCC
Confidence 46888876654 1 566777773321 1135777777654
No 237
>KOG3726|consensus
Probab=22.90 E-value=46 Score=32.95 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=33.4
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
-+|-+|...-+...--|.++.|+-.||.+|....- ..||.|.-....
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~---------~~~~vC~~~~~~ 701 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYA---------SISEVCGPDAAI 701 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhhh---------ccCcccCchhhh
Confidence 46888877665444467778899999999865433 369999866553
No 238
>KOG0250|consensus
Probab=22.87 E-value=3e+02 Score=29.08 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=14.3
Q ss_pred CCchhHHH-HHHHHHHHHhCCCCCCCcccccC
Q psy11858 226 PDSSHALL-ITRRAYVRRRGAHTQTPPLFSHG 256 (267)
Q Consensus 226 ~~~~~~~~-~~r~~y~~~~~~~~~~~~~~~~~ 256 (267)
++....++ .-.++|.++ ++||.-|-|
T Consensus 474 G~~m~~lL~~I~r~~~~f-----~~~P~GPlG 500 (1074)
T KOG0250|consen 474 GPNMPQLLRAIERRKRRF-----QTPPKGPLG 500 (1074)
T ss_pred chhhHHHHHHHHHHHhcC-----CCCCCCCcc
Confidence 33333344 344444444 889888766
No 239
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.61 E-value=3e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 187 ERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 187 e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
..+..++...+++...++...+.++
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333455555555555555555554
No 240
>KOG2077|consensus
Probab=22.34 E-value=1.9e+02 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy11858 162 IAIKRMSEILLYKANECVSK 181 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~ 181 (267)
+|++..+.+|++++.++.+.
T Consensus 346 ea~kqak~Klee~i~elEEE 365 (832)
T KOG2077|consen 346 EAVKQAKLKLEEKIRELEEE 365 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 241
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.15 E-value=67 Score=19.84 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=11.1
Q ss_pred CCccccCCCCceeec
Q psy11858 72 TGTLRCPICREQITI 86 (267)
Q Consensus 72 ~~~~~CP~C~~~~~~ 86 (267)
.+.+.||.|+..+-.
T Consensus 17 ~~~irC~~CG~rIly 31 (44)
T smart00659 17 KDVVRCRECGYRILY 31 (44)
T ss_pred CCceECCCCCceEEE
Confidence 466888888877654
No 242
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=21.93 E-value=46 Score=13.87 Aligned_cols=7 Identities=57% Similarity=1.208 Sum_probs=4.6
Q ss_pred cccCCCC
Q psy11858 253 FSHGLSP 259 (267)
Q Consensus 253 ~~~~~~~ 259 (267)
.|+||-|
T Consensus 3 wS~~w~P 9 (10)
T PF00446_consen 3 WSHGWKP 9 (10)
T ss_pred cccccCC
Confidence 4677766
No 243
>PHA02107 hypothetical protein
Probab=21.62 E-value=3.4e+02 Score=21.96 Aligned_cols=40 Identities=5% Similarity=-0.047 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 171 LLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 171 l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+.....-...+++++++.+++++....++++.|+..++.|
T Consensus 175 iRG~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IKN~I 214 (216)
T PHA02107 175 VRGVFHFASVRISEIDEEIKELQARRKEIEDNIKSIKNAI 214 (216)
T ss_pred HHHHhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333445566778888888888888888888877766554
No 244
>KOG2077|consensus
Probab=21.47 E-value=2.4e+02 Score=27.67 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 165 KRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 165 ~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
...+..|..++.++.....-++..+...+..+.+++.+|++.-++|
T Consensus 321 NiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEEl 366 (832)
T KOG2077|consen 321 NIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEEL 366 (832)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555555555554
No 245
>KOG0971|consensus
Probab=21.17 E-value=1.6e+02 Score=30.44 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCceeeHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 154 EHTIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 154 ~H~~~~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+|.+.-+.+.+++....+..+-.+..+.+..++..+.++++.+.++.+..+..-..+
T Consensus 1000 ~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k~ 1056 (1243)
T KOG0971|consen 1000 DHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKKT 1056 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccccc
Confidence 777777788888888888888888888888888888888888888888876654444
No 246
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=21.15 E-value=39 Score=22.42 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=20.6
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...||+|...++.++.+|. .++-|..|-.
T Consensus 2 k~~CPlCkt~~n~gsk~~p----NyntCT~Ck~ 30 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDPP----NYNTCTECKS 30 (61)
T ss_pred CccCCcccchhhcCCCCCC----CccHHHHHhh
Confidence 3679999988887666764 4566666643
No 247
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=21.14 E-value=66 Score=18.46 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=5.7
Q ss_pred CccccCCCCcee
Q psy11858 73 GTLRCPICREQI 84 (267)
Q Consensus 73 ~~~~CP~C~~~~ 84 (267)
..+.||.|...+
T Consensus 16 ~~irC~~CG~RI 27 (32)
T PF03604_consen 16 DPIRCPECGHRI 27 (32)
T ss_dssp STSSBSSSS-SE
T ss_pred CcEECCcCCCeE
Confidence 345566655443
No 248
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=3.7e+02 Score=23.62 Aligned_cols=34 Identities=6% Similarity=0.079 Sum_probs=13.3
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 177 ECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.+...+..+...+...+....+....+.+....|
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444
No 249
>KOG0006|consensus
Probab=21.02 E-value=1e+02 Score=27.72 Aligned_cols=32 Identities=34% Similarity=0.802 Sum_probs=24.5
Q ss_pred cceecccccccccCCCCcee-cCCC--CHHHHhhHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL-LPCS--HTVCLHCLSRIAA 66 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~-L~C~--HsfC~~Ci~~~~~ 66 (267)
-..|-.|.+.- +|++ ++|. |..|..|..-+..
T Consensus 221 ni~C~~Ctdv~-----~~vlvf~Cns~HvtC~dCFr~yc~ 255 (446)
T KOG0006|consen 221 NITCITCTDVR-----SPVLVFQCNSRHVTCLDCFRLYCV 255 (446)
T ss_pred cceeEEecCCc-----cceEEEecCCceeehHHhhhhHhh
Confidence 57898897665 5655 6999 9999999875544
No 250
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.93 E-value=9.3 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=10.4
Q ss_pred CHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 54 HTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 54 HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
|-||..|-...... ..+-...||.|+..
T Consensus 3 ~rfC~~CG~~t~~~--~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPA--PGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE---SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCC--CCcCEeECCCCcCE
Confidence 44555554432221 12345566666654
No 251
>KOG2391|consensus
Probab=20.74 E-value=4e+02 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=8.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHH
Q psy11858 185 CPERKSNLRPSAHKADAYVRR 205 (267)
Q Consensus 185 ~~e~l~~l~~~~~~~~~~i~~ 205 (267)
++.++..+..+.+-+...+++
T Consensus 258 LEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 258 LEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 333333444444444444444
No 252
>KOG2789|consensus
Probab=20.73 E-value=31 Score=31.87 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=24.6
Q ss_pred cceecccccccccCCCCceec--CCCCHHHHhhHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIA 65 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L--~C~HsfC~~Ci~~~~ 65 (267)
...||||+..|. ..+.+ -|..++|..|+..+.
T Consensus 74 ~~ecpicflyyp----s~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 74 KTECPICFLYYP----SAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred cccCceeeeecc----cccchhhhhccchhhhheeccc
Confidence 478999998886 33443 599999999987543
No 253
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.65 E-value=55 Score=17.53 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.7
Q ss_pred CCccccCCCCc
Q psy11858 72 TGTLRCPICRE 82 (267)
Q Consensus 72 ~~~~~CP~C~~ 82 (267)
+..|.||.|..
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 56799999963
No 254
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=20.39 E-value=50 Score=16.28 Aligned_cols=11 Identities=36% Similarity=1.189 Sum_probs=6.9
Q ss_pred cccCCCCceee
Q psy11858 75 LRCPICREQIT 85 (267)
Q Consensus 75 ~~CP~C~~~~~ 85 (267)
+.||.|...+.
T Consensus 1 ~~C~~C~~~~~ 11 (24)
T PF13894_consen 1 FQCPICGKSFR 11 (24)
T ss_dssp EE-SSTS-EES
T ss_pred CCCcCCCCcCC
Confidence 46899988876
No 255
>KOG2685|consensus
Probab=20.32 E-value=2.7e+02 Score=26.01 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 179 VSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 179 ~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
...+.+.+++..+++....+..+.|...-..|
T Consensus 277 ~~ri~etqdar~kL~~ql~k~leEi~~~e~~I 308 (421)
T KOG2685|consen 277 KKRIRETQDARNKLEWQLAKTLEEIADAENNI 308 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444445555555555555444444444444
No 256
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.32 E-value=50 Score=17.85 Aligned_cols=11 Identities=27% Similarity=1.183 Sum_probs=8.9
Q ss_pred cccCCCCceee
Q psy11858 75 LRCPICREQIT 85 (267)
Q Consensus 75 ~~CP~C~~~~~ 85 (267)
+.||.|.+...
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 57999998864
No 257
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=60 Score=21.59 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=13.5
Q ss_pred cceecccccccccCCCCceecC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLP 51 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~ 51 (267)
++.|+.|+..|.-.+-.|++|+
T Consensus 26 ~L~c~~~~~aYpI~dGIPvlL~ 47 (60)
T COG2835 26 ELICPRCKLAYPIRDGIPVLLP 47 (60)
T ss_pred EEEecccCceeecccCccccCc
Confidence 5667777766654444666654
No 258
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=70 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.797 Sum_probs=17.9
Q ss_pred CHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 54 HTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 54 HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..||..|-..-. ..||.|..++.
T Consensus 28 eafcskcgeati---------~qcp~csasir 50 (160)
T COG4306 28 EAFCSKCGEATI---------TQCPICSASIR 50 (160)
T ss_pred HHHHhhhchHHH---------hcCCccCCccc
Confidence 479999976544 46999999886
No 259
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the