Query psy11858
Match_columns 267
No_of_seqs 182 out of 2110
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:43:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jm7_B BARD1, BRCA1-associated 99.5 2.1E-15 7.1E-20 114.9 0.3 89 29-134 21-114 (117)
2 3ztg_A E3 ubiquitin-protein li 99.5 4.2E-14 1.4E-18 102.8 5.3 70 29-110 12-82 (92)
3 1t1h_A Gspef-atpub14, armadill 99.4 5.8E-14 2E-18 98.9 1.8 68 29-110 7-74 (78)
4 3fl2_A E3 ubiquitin-protein li 99.4 2E-13 6.8E-18 104.8 4.4 67 29-108 51-117 (124)
5 2kr4_A Ubiquitin conjugation f 99.3 3.9E-13 1.3E-17 96.4 3.7 67 29-110 13-79 (85)
6 2y43_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 99.5 3.0 68 29-111 21-89 (99)
7 3lrq_A E3 ubiquitin-protein li 99.3 1.4E-13 4.8E-18 101.7 0.2 73 23-110 16-89 (100)
8 2kre_A Ubiquitin conjugation f 99.3 5.5E-13 1.9E-17 98.5 3.0 67 29-110 28-94 (100)
9 1z6u_A NP95-like ring finger p 99.3 1E-12 3.5E-17 104.2 4.5 67 29-108 77-143 (150)
10 2ecw_A Tripartite motif-contai 99.3 1.5E-13 5E-18 98.0 -0.6 54 29-86 18-71 (85)
11 2yu4_A E3 SUMO-protein ligase 99.3 8.9E-13 3E-17 96.3 3.2 73 29-110 6-82 (94)
12 1wgm_A Ubiquitin conjugation f 99.3 1.6E-12 5.5E-17 95.6 4.6 67 29-110 21-88 (98)
13 2ct2_A Tripartite motif protei 99.3 4.5E-13 1.5E-17 96.3 1.5 72 23-100 9-80 (88)
14 4ayc_A E3 ubiquitin-protein li 99.3 7.8E-13 2.7E-17 103.4 1.1 64 27-107 50-113 (138)
15 2yur_A Retinoblastoma-binding 99.3 2E-12 6.8E-17 90.1 3.0 50 29-86 14-64 (74)
16 2ecv_A Tripartite motif-contai 99.2 2.1E-13 7.2E-18 97.2 -2.6 54 29-86 18-71 (85)
17 2ckl_A Polycomb group ring fin 99.2 1.6E-12 5.5E-17 97.3 2.1 74 23-108 9-83 (108)
18 2egp_A Tripartite motif-contai 99.2 9E-14 3.1E-18 98.0 -5.2 54 29-86 11-65 (79)
19 2ysj_A Tripartite motif-contai 99.2 8.4E-12 2.9E-16 84.0 3.5 46 28-80 18-63 (63)
20 2csy_A Zinc finger protein 183 99.2 7.9E-12 2.7E-16 88.5 3.4 48 28-85 13-60 (81)
21 1jm7_A BRCA1, breast cancer ty 99.2 1.5E-12 5.1E-17 97.9 -0.7 51 29-86 20-70 (112)
22 3l11_A E3 ubiquitin-protein li 99.2 1.1E-12 3.6E-17 99.4 -1.8 71 28-107 13-85 (115)
23 2ysl_A Tripartite motif-contai 99.2 8.6E-12 3E-16 86.4 2.7 52 28-86 18-69 (73)
24 2ckl_B Ubiquitin ligase protei 99.2 6.1E-12 2.1E-16 101.2 2.2 67 29-108 53-120 (165)
25 2f42_A STIP1 homology and U-bo 99.1 1.7E-11 5.7E-16 99.4 3.4 68 29-110 105-172 (179)
26 2ecy_A TNF receptor-associated 99.1 1.6E-11 5.4E-16 83.4 2.6 49 29-86 14-62 (66)
27 1bor_A Transcription factor PM 99.1 4.2E-12 1.4E-16 83.6 -0.6 50 29-91 5-54 (56)
28 2djb_A Polycomb group ring fin 99.1 2E-11 6.8E-16 84.5 2.7 48 29-86 14-62 (72)
29 2c2l_A CHIP, carboxy terminus 99.1 1.5E-11 5.1E-16 106.6 2.4 67 29-109 207-273 (281)
30 2jun_A Midline-1; B-BOX, TRIM, 99.1 6.8E-12 2.3E-16 92.7 -0.1 95 29-161 2-100 (101)
31 3hct_A TNF receptor-associated 99.1 2.1E-11 7E-16 92.7 2.0 65 28-106 16-80 (118)
32 1rmd_A RAG1; V(D)J recombinati 99.1 3.6E-11 1.2E-15 91.0 2.6 49 29-86 22-70 (116)
33 1g25_A CDK-activating kinase a 99.1 3.4E-11 1.2E-15 81.5 2.0 53 29-86 2-55 (65)
34 3htk_C E3 SUMO-protein ligase 99.1 4.7E-11 1.6E-15 101.5 2.7 75 21-109 173-250 (267)
35 1e4u_A Transcriptional repress 99.0 6.4E-11 2.2E-15 83.2 1.9 52 28-86 9-62 (78)
36 2ecj_A Tripartite motif-contai 99.0 7.9E-11 2.7E-15 77.6 2.0 45 29-80 14-58 (58)
37 3knv_A TNF receptor-associated 99.0 3.1E-11 1.1E-15 94.6 -0.5 49 28-85 29-77 (141)
38 3ng2_A RNF4, snurf, ring finge 99.0 5.9E-11 2E-15 81.6 0.8 48 29-86 9-63 (71)
39 2d8t_A Dactylidin, ring finger 99.0 6.3E-11 2.2E-15 81.7 0.9 47 29-85 14-60 (71)
40 2ea6_A Ring finger protein 4; 99.0 1E-10 3.5E-15 79.8 1.2 52 28-85 13-67 (69)
41 2ecm_A Ring finger and CHY zin 98.9 1.7E-10 5.9E-15 75.2 1.4 51 29-85 4-54 (55)
42 3hcs_A TNF receptor-associated 98.9 2.3E-10 7.9E-15 92.3 1.6 64 29-106 17-80 (170)
43 2xeu_A Ring finger protein 4; 98.9 2E-10 6.9E-15 77.1 0.8 52 29-86 2-56 (64)
44 1chc_A Equine herpes virus-1 r 98.9 3.2E-10 1.1E-14 77.2 0.8 47 29-85 4-51 (68)
45 1x4j_A Ring finger protein 38; 98.9 6.4E-10 2.2E-14 77.4 1.8 53 27-86 20-72 (75)
46 1iym_A EL5; ring-H2 finger, ub 98.8 4.8E-10 1.6E-14 73.0 0.6 50 29-85 4-54 (55)
47 2kiz_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 74.0 3.0 51 29-86 13-63 (69)
48 2ect_A Ring finger protein 126 98.8 6.9E-10 2.4E-14 77.7 1.2 51 29-86 14-64 (78)
49 4ic3_A E3 ubiquitin-protein li 98.8 2.6E-10 9E-15 79.3 -1.6 43 29-85 23-66 (74)
50 2l0b_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 79.2 1.5 50 29-85 39-88 (91)
51 4ap4_A E3 ubiquitin ligase RNF 98.8 1E-09 3.5E-14 84.4 1.1 49 28-86 5-60 (133)
52 1wim_A KIAA0161 protein; ring 98.7 5.3E-10 1.8E-14 81.3 -1.7 52 29-84 4-62 (94)
53 2ecn_A Ring finger protein 141 98.7 4.7E-10 1.6E-14 76.9 -2.7 46 29-85 14-59 (70)
54 2ep4_A Ring finger protein 24; 98.7 3.1E-09 1E-13 73.6 1.1 49 30-85 15-63 (74)
55 2ecg_A Baculoviral IAP repeat- 98.7 9.5E-10 3.2E-14 76.6 -1.5 43 29-85 24-67 (75)
56 1v87_A Deltex protein 2; ring- 98.7 8.6E-09 2.9E-13 77.4 3.4 56 30-86 25-94 (114)
57 2csv_A Tripartite motif protei 98.6 1.3E-08 4.3E-13 70.3 1.0 52 114-172 17-68 (72)
58 2vje_B MDM4 protein; proto-onc 98.5 2.2E-08 7.6E-13 67.2 1.4 48 28-85 5-55 (63)
59 2ea5_A Cell growth regulator w 98.5 1.3E-08 4.5E-13 69.4 0.2 49 23-85 8-57 (68)
60 2ecl_A Ring-box protein 2; RNF 98.5 2.7E-08 9.3E-13 70.2 1.8 51 30-86 15-76 (81)
61 2d8u_A Ubiquitin ligase TRIM63 98.5 2.4E-09 8.3E-14 72.1 -3.7 53 114-172 7-60 (64)
62 2y1n_A E3 ubiquitin-protein li 98.5 2.7E-08 9.2E-13 89.6 1.7 48 30-86 332-379 (389)
63 2vje_A E3 ubiquitin-protein li 98.5 2.6E-08 8.8E-13 67.1 1.1 47 29-85 7-56 (64)
64 4ap4_A E3 ubiquitin ligase RNF 98.4 2.9E-08 9.8E-13 76.1 0.7 55 26-86 68-125 (133)
65 2yho_A E3 ubiquitin-protein li 98.4 1.3E-08 4.4E-13 71.6 -1.2 43 29-85 17-60 (79)
66 2did_A Tripartite motif protei 98.4 2.2E-08 7.5E-13 64.8 -0.2 45 114-164 7-51 (53)
67 3dpl_R Ring-box protein 1; ubi 98.4 5.3E-08 1.8E-12 72.3 1.1 54 27-86 34-101 (106)
68 1fre_A Nuclear factor XNF7; zi 98.4 1.3E-07 4.5E-12 57.9 2.5 39 115-159 3-41 (42)
69 2dja_A Midline-2; tripartite m 98.4 3.8E-10 1.3E-14 80.4 -10.7 56 114-175 17-73 (84)
70 2yvr_A Transcription intermedi 98.4 7.7E-08 2.6E-12 61.4 0.9 44 114-164 5-49 (50)
71 2yrg_A Tripartite motif-contai 98.3 7.1E-08 2.4E-12 63.8 -0.6 44 115-164 14-57 (59)
72 3t6p_A Baculoviral IAP repeat- 98.2 1.6E-07 5.4E-12 83.8 -0.6 43 29-85 294-337 (345)
73 3ddt_A E3 ubiquitin-protein li 98.1 7.4E-07 2.5E-11 56.2 1.2 42 114-161 5-47 (48)
74 2bay_A PRE-mRNA splicing facto 98.1 6.5E-07 2.2E-11 59.5 0.8 47 30-86 3-50 (61)
75 2d8s_A Cellular modulator of i 98.1 1.1E-06 3.7E-11 61.7 1.9 53 29-87 14-71 (80)
76 4a0k_B E3 ubiquitin-protein li 98.0 5.4E-07 1.8E-11 67.9 -0.3 52 29-86 47-112 (117)
77 2egm_A Tripartite motif-contai 97.9 9.4E-07 3.2E-11 57.9 -1.3 41 114-160 17-57 (57)
78 3vk6_A E3 ubiquitin-protein li 97.7 1.1E-05 3.9E-10 58.0 1.6 46 32-85 3-48 (101)
79 2ct0_A Non-SMC element 1 homol 97.4 6.9E-05 2.3E-09 51.5 2.2 56 24-86 9-64 (74)
80 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00047 1.6E-08 45.3 2.3 50 29-86 5-59 (60)
81 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0013 4.3E-08 58.0 1.8 58 29-86 307-373 (381)
82 3nw0_A Non-structural maintena 90.5 0.11 3.6E-06 43.7 2.0 51 29-86 179-229 (238)
83 2cs3_A Protein C14ORF4, MY039 89.1 0.093 3.2E-06 35.9 0.5 46 30-80 15-64 (93)
84 3m62_A Ubiquitin conjugation f 89.1 0.24 8.2E-06 49.3 3.6 68 29-111 890-958 (968)
85 1weo_A Cellulose synthase, cat 82.4 0.93 3.2E-05 31.6 2.8 52 30-86 16-70 (93)
86 1joc_A EEA1, early endosomal a 72.5 0.9 3.1E-05 34.0 0.5 33 30-62 69-101 (125)
87 2jne_A Hypothetical protein YF 71.7 0.95 3.3E-05 32.1 0.4 11 31-41 33-43 (101)
88 1z2q_A LM5-1; membrane protein 71.6 0.92 3.1E-05 31.3 0.3 33 30-62 21-53 (84)
89 2yw8_A RUN and FYVE domain-con 71.1 0.88 3E-05 31.3 0.1 33 30-62 19-51 (82)
90 3t7l_A Zinc finger FYVE domain 70.3 1.1 3.8E-05 31.4 0.5 33 30-62 20-52 (90)
91 3mjh_B Early endosome antigen 67.7 0.85 2.9E-05 25.9 -0.5 13 29-41 4-16 (34)
92 3nis_A E3 ubiquitin-protein li 67.3 4 0.00014 28.1 2.8 40 114-159 7-52 (82)
93 1y02_A CARP2, FYVE-ring finger 67.3 0.91 3.1E-05 33.7 -0.5 35 30-64 19-53 (120)
94 1vfy_A Phosphatidylinositol-3- 66.9 1.2 4E-05 29.9 0.0 32 31-62 12-43 (73)
95 1x4u_A Zinc finger, FYVE domai 65.9 1.2 4.1E-05 30.7 -0.1 33 30-62 14-46 (84)
96 1wfk_A Zinc finger, FYVE domai 63.2 1.2 4.2E-05 31.0 -0.4 33 30-62 9-41 (88)
97 3i2d_A E3 SUMO-protein ligase 62.0 4 0.00014 36.2 2.5 66 30-106 249-315 (371)
98 2ko5_A Ring finger protein Z; 60.2 1.9 6.4E-05 30.4 0.0 46 29-85 27-72 (99)
99 3zyq_A Hepatocyte growth facto 60.2 2.6 9E-05 34.7 1.0 33 30-62 164-196 (226)
100 4fo9_A E3 SUMO-protein ligase 56.6 6.3 0.00022 34.8 2.8 66 30-106 215-281 (360)
101 3ny3_A E3 ubiquitin-protein li 56.0 3 0.0001 28.1 0.5 38 116-159 5-48 (75)
102 1dvp_A HRS, hepatocyte growth 55.7 2.1 7.1E-05 35.1 -0.4 33 30-62 161-193 (220)
103 2jrp_A Putative cytoplasmic pr 53.4 5.3 0.00018 27.3 1.4 12 75-86 3-14 (81)
104 2w83_C C-JUN-amino-terminal ki 53.4 48 0.0016 22.2 6.0 50 162-211 26-75 (77)
105 2zet_C Melanophilin; complex, 52.9 3.4 0.00012 31.9 0.4 51 29-84 67-118 (153)
106 2zqm_A Prefoldin beta subunit 52.7 46 0.0016 23.6 6.7 42 167-208 71-112 (117)
107 1fxk_A Prefoldin; archaeal pro 52.6 41 0.0014 23.5 6.3 41 167-207 66-106 (107)
108 3ghg_A Fibrinogen alpha chain; 51.2 27 0.00094 32.2 6.1 52 159-210 103-154 (562)
109 3mpx_A FYVE, rhogef and PH dom 50.5 3.3 0.00011 37.2 0.0 54 30-83 375-429 (434)
110 2lv2_A Insulinoma-associated p 48.4 21 0.00073 24.1 4.0 42 29-86 27-68 (85)
111 1jnm_A Proto-oncogene C-JUN; B 47.3 52 0.0018 20.8 6.7 48 162-209 11-58 (62)
112 2drp_A Protein (tramtrack DNA- 45.5 25 0.00084 21.5 3.8 42 29-85 9-51 (66)
113 1l8d_A DNA double-strand break 45.4 62 0.0021 22.8 6.3 33 172-204 70-102 (112)
114 1gmj_A ATPase inhibitor; coile 44.9 72 0.0025 21.8 6.5 16 188-203 59-74 (84)
115 1fxk_C Protein (prefoldin); ar 44.8 62 0.0021 23.6 6.5 46 159-208 85-130 (133)
116 2zdi_C Prefoldin subunit alpha 44.7 70 0.0024 24.1 6.8 46 166-211 98-143 (151)
117 3nmd_A CGMP dependent protein 44.4 58 0.002 21.6 5.3 44 163-210 20-63 (72)
118 2o35_A Hypothetical protein DU 43.9 6.1 0.00021 28.0 0.5 13 55-67 42-54 (105)
119 3fyb_A Protein of unknown func 43.5 6.2 0.00021 27.9 0.5 13 55-67 41-53 (104)
120 1zbd_B Rabphilin-3A; G protein 43.5 3.6 0.00012 31.1 -0.8 53 29-83 54-107 (134)
121 1ci6_A Transcription factor AT 42.7 64 0.0022 20.6 6.8 47 162-208 12-58 (63)
122 2eps_A POZ-, at HOOK-, and zin 41.1 41 0.0014 19.7 4.2 41 30-85 12-52 (54)
123 2yo3_A General control protein 39.5 97 0.0033 26.0 7.2 51 160-210 203-253 (268)
124 4gzn_C ZFP-57, zinc finger pro 39.2 25 0.00085 22.0 2.9 42 29-86 3-44 (60)
125 1kd8_B GABH BLL, GCN4 acid bas 38.9 48 0.0016 18.7 3.6 16 175-190 10-25 (36)
126 1vd4_A Transcription initiatio 38.2 40 0.0014 20.6 3.9 39 30-87 14-52 (62)
127 2oxj_A Hybrid alpha/beta pepti 37.0 55 0.0019 18.2 3.6 27 183-209 4-30 (34)
128 1deq_A Fibrinogen (alpha chain 36.2 83 0.0028 27.8 6.5 11 74-84 45-56 (390)
129 6rxn_A Rubredoxin; electron tr 35.8 12 0.00041 22.6 0.9 36 30-83 4-39 (46)
130 2ct7_A Ring finger protein 31; 35.4 5.9 0.0002 27.2 -0.7 33 32-64 27-61 (86)
131 1t2k_D Cyclic-AMP-dependent tr 35.3 83 0.0028 19.7 6.8 46 162-207 11-56 (61)
132 3c3f_A Alpha/beta peptide with 34.5 61 0.0021 18.0 3.6 24 184-207 5-28 (34)
133 2ct1_A Transcriptional repress 34.3 45 0.0015 21.1 3.8 41 30-85 15-56 (77)
134 1gu4_A CAAT/enhancer binding p 34.2 1E+02 0.0036 20.6 7.5 50 162-211 25-74 (78)
135 1bbo_A Human enhancer-binding 33.8 30 0.001 20.3 2.7 39 31-85 2-40 (57)
136 2bni_A General control protein 33.7 63 0.0021 18.0 3.5 26 183-208 4-29 (34)
137 1hjb_A Ccaat/enhancer binding 33.3 1.2E+02 0.004 20.8 6.8 50 162-211 25-74 (87)
138 3uk3_C Zinc finger protein 217 32.9 33 0.0011 20.1 2.7 40 30-85 4-43 (57)
139 2hy6_A General control protein 32.2 59 0.002 18.1 3.2 24 184-207 5-28 (34)
140 3lqh_A Histone-lysine N-methyl 31.8 1.8E+02 0.006 22.8 7.4 12 75-86 3-14 (183)
141 3l4q_C Phosphatidylinositol 3- 31.2 1.3E+02 0.0044 23.4 6.3 54 154-211 88-141 (170)
142 3ljm_A Coil Ser L9C; de novo d 30.9 62 0.0021 16.9 3.7 19 172-190 7-25 (31)
143 1wil_A KIAA1045 protein; ring 30.8 18 0.00061 24.9 1.1 49 30-83 15-76 (89)
144 2epr_A POZ-, at HOOK-, and zin 30.7 44 0.0015 18.9 2.9 37 30-82 12-48 (48)
145 2jvx_A NF-kappa-B essential mo 30.2 8.2 0.00028 20.7 -0.5 17 30-50 3-19 (28)
146 1m1j_A Fibrinogen alpha subuni 30.1 1.3E+02 0.0046 27.2 7.0 49 162-210 107-155 (491)
147 1x5w_A Zinc finger protein 64, 30.1 40 0.0014 20.9 2.9 40 30-85 9-48 (70)
148 2adr_A ADR1; transcription reg 30.1 54 0.0018 19.3 3.4 40 30-85 2-41 (60)
149 1x6e_A Zinc finger protein 24; 30.0 51 0.0017 20.5 3.4 41 29-85 13-53 (72)
150 2lce_A B-cell lymphoma 6 prote 29.8 64 0.0022 20.1 3.9 41 29-85 16-56 (74)
151 2epq_A POZ-, at HOOK-, and zin 29.4 66 0.0023 17.6 3.6 36 30-81 10-45 (45)
152 2l5g_B Putative uncharacterize 27.4 98 0.0034 18.1 4.0 16 183-198 19-34 (42)
153 3c3g_A Alpha/beta peptide with 27.3 84 0.0029 17.3 3.6 23 185-207 5-27 (33)
154 2dgc_A Protein (GCN4); basic d 26.7 1.3E+02 0.0043 19.2 5.7 28 183-210 33-60 (63)
155 2yo3_A General control protein 25.8 1.3E+02 0.0044 25.2 5.8 44 168-211 218-261 (268)
156 1lwu_C Fibrinogen gamma chain; 25.5 1E+02 0.0035 26.6 5.3 31 180-210 26-56 (323)
157 2eoe_A Zinc finger protein 347 25.4 60 0.0021 17.8 2.9 12 30-41 12-23 (46)
158 1gmj_A ATPase inhibitor; coile 25.3 1.6E+02 0.0056 20.0 6.9 18 193-210 57-74 (84)
159 2xqn_T Testin, TESS; metal-bin 25.2 17 0.00057 26.4 0.3 54 21-85 21-74 (126)
160 1jcd_A Major outer membrane li 25.1 1.2E+02 0.0043 18.6 5.6 39 170-208 8-46 (52)
161 4g2k_A General control protein 24.9 40 0.0014 24.6 2.2 38 170-207 18-55 (125)
162 1loi_A Cyclic 3',5'-AMP specif 24.8 14 0.00047 18.7 -0.2 9 127-135 6-14 (26)
163 2ytn_A Zinc finger protein 347 24.8 59 0.002 17.9 2.7 12 30-41 12-23 (46)
164 3oja_B Anopheles plasmodium-re 24.3 1.4E+02 0.0048 27.4 6.5 6 60-65 361-366 (597)
165 3pp5_A BRK1, protein brick1; t 24.2 1.6E+02 0.0054 19.5 6.8 40 166-205 31-70 (73)
166 1aq5_A Matrilin-1, CMP, cartil 24.2 1.2E+02 0.0042 18.2 4.9 31 163-193 13-43 (47)
167 1x6h_A Transcriptional repress 23.7 86 0.003 19.9 3.8 41 30-85 15-58 (86)
168 2em5_A ZFP-95, zinc finger pro 23.6 57 0.0019 18.1 2.5 12 30-41 12-23 (46)
169 3swf_A CGMP-gated cation chann 23.4 1.7E+02 0.0057 19.4 5.2 14 180-193 14-27 (74)
170 3gp4_A Transcriptional regulat 23.3 1.9E+02 0.0064 21.4 5.9 18 177-194 92-109 (142)
171 2eop_A Zinc finger protein 268 23.2 64 0.0022 17.7 2.6 12 30-41 12-23 (46)
172 3swy_A Cyclic nucleotide-gated 22.8 1.3E+02 0.0045 18.0 5.4 34 174-207 6-39 (46)
173 1wep_A PHF8; structural genomi 22.7 45 0.0015 22.1 2.1 48 30-85 12-65 (79)
174 2ysp_A Zinc finger protein 224 22.6 65 0.0022 17.7 2.6 12 30-41 12-23 (46)
175 2en1_A Zinc finger protein 224 22.5 66 0.0023 17.7 2.6 12 30-41 12-23 (46)
176 2d9h_A Zinc finger protein 692 22.5 57 0.002 20.6 2.6 42 29-85 6-49 (78)
177 2epz_A Zinc finger protein 28 22.3 70 0.0024 17.6 2.7 12 30-41 12-23 (46)
178 1wem_A Death associated transc 22.2 8.9 0.0003 25.5 -1.6 52 29-85 15-72 (76)
179 2ytr_A Zinc finger protein 347 22.1 67 0.0023 17.6 2.6 12 30-41 12-23 (46)
180 2wt7_A Proto-oncogene protein 22.0 1.6E+02 0.0053 18.6 6.8 44 163-206 13-56 (63)
181 2eq4_A Zinc finger protein 224 21.7 1.1E+02 0.0037 16.6 3.6 12 30-41 12-23 (46)
182 2epx_A Zinc finger protein 28 21.6 91 0.0031 17.1 3.1 12 30-41 12-23 (47)
183 1uo4_A General control protein 21.4 1.2E+02 0.004 16.9 3.5 26 183-208 4-29 (34)
184 2ctd_A Zinc finger protein 512 21.4 83 0.0028 21.3 3.4 40 29-85 33-73 (96)
185 2cot_A Zinc finger protein 435 21.3 89 0.003 19.6 3.4 41 29-85 17-57 (77)
186 2wq1_A General control protein 21.2 1.2E+02 0.004 16.7 3.6 17 189-205 9-25 (33)
187 2ffw_A Midline-1; B-BOX, ring 20.7 29 0.00098 23.2 0.7 34 124-158 43-76 (78)
188 2ytd_A Zinc finger protein 473 20.5 1.1E+02 0.0037 16.7 3.3 12 30-41 12-23 (46)
189 1deq_A Fibrinogen (alpha chain 20.4 1.8E+02 0.0062 25.6 5.8 18 123-140 33-51 (390)
190 3m48_A General control protein 20.4 1.2E+02 0.0042 16.7 3.5 26 184-209 4-29 (33)
191 1llm_C Chimera of ZIF23-GCN4; 20.3 74 0.0025 20.6 2.9 40 30-85 3-42 (88)
192 1yke_B RNA polymerase II holoe 20.3 2.8E+02 0.0097 20.9 6.5 35 177-211 96-130 (151)
193 2eod_A TNF receptor-associated 20.3 1.3E+02 0.0044 18.1 3.9 39 30-86 10-49 (66)
No 1
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=2.1e-15 Score=114.85 Aligned_cols=89 Identities=22% Similarity=0.522 Sum_probs=60.6
Q ss_pred ccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+.+.|+||++.|. +|+++ +|||+||..||..|+. ..||.|+..+.. ..+..|+.+.++++.+
T Consensus 21 ~~~~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~-----~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 21 KLLRCSRCTNILR----EPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWI-----QDLKINRQLDSMIQLC 83 (117)
T ss_dssp HTTSCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSC-----SSCCCCHHHHHHHHHH
T ss_pred hCCCCCCCChHhh----CccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCcc-----ccccccHHHHHHHHHH
Confidence 4899999999998 99999 9999999999998875 579999999864 5788899999998877
Q ss_pred Hhhc----ccCCCCCCCCCCccccccccccc
Q psy11858 108 SRQR----RHIIPKCSTHNSQELLFCETCDT 134 (267)
Q Consensus 108 ~~~~----~~~~~~C~~H~~~~~~fC~~C~~ 134 (267)
.... ......|..|.+...+||++.+.
T Consensus 84 ~~~~~~~~~~~~~~c~~h~~~~~lfc~~~~k 114 (117)
T 1jm7_B 84 SKLRNLLHDNELSDLKEDKPRKSLFNDAGNK 114 (117)
T ss_dssp HHHHHHHHCCCCCC-----------------
T ss_pred HHHHHHHhhccccccccccccCccceecccc
Confidence 6543 23467899999888899998764
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=102.83 Aligned_cols=70 Identities=20% Similarity=0.494 Sum_probs=60.2
Q ss_pred ccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+.+.|+||++.|. +|++++ |||+||..||..|+.. .+...||.|+..+... ..+..|+.+.++++.+
T Consensus 12 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 12 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSP----DALIANKFLRQAVNNF 79 (92)
T ss_dssp TTTEETTTTEECS----SCEECTTTCCEECHHHHHHHHHH----CTTCCCTTTCCSSCCT----TSCEECHHHHHHHHHH
T ss_pred cCCCCCCCChhhc----CceECCCCCCHHHHHHHHHHHHh----cCCCcCcCCCCcCCCc----cccCcCHHHHHHHHHH
Confidence 4899999999999 999999 9999999999999975 2457999999987422 5778999999999988
Q ss_pred Hhh
Q psy11858 108 SRQ 110 (267)
Q Consensus 108 ~~~ 110 (267)
...
T Consensus 80 ~~~ 82 (92)
T 3ztg_A 80 KNE 82 (92)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=5.8e-14 Score=98.89 Aligned_cols=68 Identities=19% Similarity=0.457 Sum_probs=58.9
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+.+.|+||++.|. +|++++|||+||..||.+|+.. +...||.|+..+.. ..+..|..+.++++.+.
T Consensus 7 ~~~~C~IC~~~~~----~Pv~~~CgH~fc~~Ci~~~~~~-----~~~~CP~C~~~~~~-----~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 7 EYFRCPISLELMK----DPVIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLH-----AGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSCTTTSCCCS----SEEEETTTEEEEHHHHHHHHTT-----TCCBCTTTCCBCSS-----CCCEECTTTHHHHHHHH
T ss_pred ccCCCCCcccccc----CCEEcCCCCeecHHHHHHHHHH-----CcCCCCCCcCCCCh-----hhCccCHHHHHHHHHHH
Confidence 4799999999999 9999999999999999999973 46789999998874 46788999999998876
Q ss_pred hh
Q psy11858 109 RQ 110 (267)
Q Consensus 109 ~~ 110 (267)
..
T Consensus 73 ~~ 74 (78)
T 1t1h_A 73 ES 74 (78)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=104.81 Aligned_cols=67 Identities=24% Similarity=0.494 Sum_probs=58.3
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+.+.|+||++.|. +|++++|||+||..||..|+.. ....||.|+..+... ..+..|..+.++++.+.
T Consensus 51 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 51 ETFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRA-----QVFSCPACRYDLGRS----YAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCCCHHHHHHHHHHS
T ss_pred cCCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhH-----CcCCCCCCCccCCCC----CCCCCCHHHHHHHHHHc
Confidence 4799999999999 9999999999999999999983 457999999998743 46788999999998763
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.35 E-value=3.9e-13 Score=96.36 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=59.3
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+++.||||+++|. +|++++|||+||+.||..||.. ...||.|+..+.. ..+.+|..+.++++.+.
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRHLLN------SPTDPFNRQMLTE-----SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred hheECcccCchhc----CCeECCCCCEECHHHHHHHHhc------CCCCCCCcCCCCh-----HhcchHHHHHHHHHHHH
Confidence 3899999999999 9999999999999999999984 3689999998875 57889999999998876
Q ss_pred hh
Q psy11858 109 RQ 110 (267)
Q Consensus 109 ~~ 110 (267)
..
T Consensus 78 ~~ 79 (85)
T 2kr4_A 78 RE 79 (85)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=99.51 Aligned_cols=68 Identities=24% Similarity=0.659 Sum_probs=59.3
Q ss_pred ccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+.+.|+||++.|. +|+.+ +|||+||..|+..|+.. ...||.|+..+.. ..+..|+.+.++++.+
T Consensus 21 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~-----~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYFN----IAMIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTE-----PDLKNNRILDELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCG-----GGCEECHHHHHHHHHH
T ss_pred CCCCcccCChhhC----CcCEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCCh-----hhCCcCHHHHHHHHHH
Confidence 4799999999999 99998 89999999999999873 3689999999875 4678899999999988
Q ss_pred Hhhc
Q psy11858 108 SRQR 111 (267)
Q Consensus 108 ~~~~ 111 (267)
....
T Consensus 86 ~~~~ 89 (99)
T 2y43_A 86 NFAR 89 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=1.4e-13 Score=101.73 Aligned_cols=73 Identities=22% Similarity=0.518 Sum_probs=60.3
Q ss_pred ccccccccceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHH
Q psy11858 23 YEDFNESFLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~ 101 (267)
.+.+.+ .+.|+||++.|. +|+. ++|||+||..||..|+... ...||.|+..+.. ..+..|..+.
T Consensus 16 ~~~l~~-~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----~~l~~~~~~~ 80 (100)
T 3lrq_A 16 VESIAE-VFRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQL-----RELVNCRWAE 80 (100)
T ss_dssp HHHHHH-HTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBCCG-----GGCEECTTHH
T ss_pred cccCCC-CCCCccCCcccc----CccccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcCCH-----HHhHhhHHHH
Confidence 344444 899999999999 9999 9999999999999999853 2789999999875 5667788888
Q ss_pred HHHHHHHhh
Q psy11858 102 QLLDLMSRQ 110 (267)
Q Consensus 102 ~~v~~~~~~ 110 (267)
.+++.+..+
T Consensus 81 ~i~~~~~~l 89 (100)
T 3lrq_A 81 EVTQQLDTL 89 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 8
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.31 E-value=5.5e-13 Score=98.46 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=59.6
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+++.||||+++|. +|++++|||+||+.||..||.. ...||.|+..+.. ..+.+|..+.++++.+.
T Consensus 28 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 28 DEFRDPLMDTLMT----DPVRLPSGTIMDRSIILRHLLN------SPTDPFNRQTLTE-----SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp TTTBCTTTCSBCS----SEEEETTTEEEEHHHHHHHTTS------CSBCSSSCCBCCT-----TSSEECHHHHHHHHHHH
T ss_pred HhhCCcCccCccc----CCeECCCCCEEchHHHHHHHHc------CCCCCCCCCCCCh-----hhceECHHHHHHHHHHH
Confidence 4899999999999 9999999999999999999972 3689999999874 57899999999999886
Q ss_pred hh
Q psy11858 109 RQ 110 (267)
Q Consensus 109 ~~ 110 (267)
..
T Consensus 93 ~~ 94 (100)
T 2kre_A 93 RE 94 (100)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 9
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=104.17 Aligned_cols=67 Identities=28% Similarity=0.590 Sum_probs=58.8
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+.+.|+||++.|. +|++++|||+||..||..|+.. +.+.||.|+..+... ..+..|+.+.++++.+.
T Consensus 77 ~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 77 QSFMCVCCQELVY----QPVTTECFHNVCKDCLQRSFKA-----QVFSCPACRHDLGQN----YIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCBCHHHHHHHHHHS
T ss_pred cCCEeecCChhhc----CCEEcCCCCchhHHHHHHHHHh-----CCCcCCCCCccCCCC----CCCCCCHHHHHHHHHHh
Confidence 4789999999998 9999999999999999999983 457899999998853 37899999999998764
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=1.5e-13 Score=98.04 Aligned_cols=54 Identities=28% Similarity=0.659 Sum_probs=46.9
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.++|||+||..|+..|+...........||.|+..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS----SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC----cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3799999999998 99999999999999999999874333457899999999874
No 11
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.9e-13 Score=96.31 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=60.2
Q ss_pred ccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCC--CCce-eecCCCCCCCCCchHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPI--CREQ-ITIPRGGVAALPPSFLVNQLL 104 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~--C~~~-~~~~~~~v~~l~~n~~l~~~v 104 (267)
+++.||||+++|. +|++++ |||+||+.||..||.......+.+.||. |+.. +.. ..|.+|..+.+++
T Consensus 6 ~~~~CPI~~~~~~----dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-----~~L~pn~~L~~~I 76 (94)
T 2yu4_A 6 SGFTCPITKEEMK----KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-----SDLIQDEALRRAI 76 (94)
T ss_dssp SCCBCTTTCSBCS----SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-----GGEEECHHHHHHH
T ss_pred cEeECcCcCchhc----CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-----hhCcCCHHHHHHH
Confidence 3799999999999 999996 9999999999999986422235689999 8866 543 5678899999999
Q ss_pred HHHHhh
Q psy11858 105 DLMSRQ 110 (267)
Q Consensus 105 ~~~~~~ 110 (267)
+.+...
T Consensus 77 ~~~~~~ 82 (94)
T 2yu4_A 77 ENHNKK 82 (94)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 988654
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.30 E-value=1.6e-12 Score=95.61 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=59.6
Q ss_pred ccceecccccccccCCCCceecCCC-CHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~-HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+++.||||+++|. +|++++|| |+||+.||..||.. ...||.|+..+.. ..|.+|..+.++++.+
T Consensus 21 ~~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 21 DEFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTM-----DQIRPNTELKEKIQRW 85 (98)
T ss_dssp TTTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCT-----TTSEECHHHHHHHHHH
T ss_pred HhcCCcCcccccc----CCeECCCCCeEECHHHHHHHHHh------CCCCCCCCCCCCh-----hhceEcHHHHHHHHHH
Confidence 4899999999999 99999999 99999999999973 3589999998874 5788999999999988
Q ss_pred Hhh
Q psy11858 108 SRQ 110 (267)
Q Consensus 108 ~~~ 110 (267)
...
T Consensus 86 ~~~ 88 (98)
T 1wgm_A 86 LAE 88 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-13 Score=96.30 Aligned_cols=72 Identities=31% Similarity=0.731 Sum_probs=55.9
Q ss_pred ccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHH
Q psy11858 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLV 100 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l 100 (267)
.+.+. +.+.|+||++.|....+.|+.++|||+||..|+..|+... .....||.|+..+... ++..++.|+.+
T Consensus 9 ~~~~~-~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~--~i~~l~~n~~~ 80 (88)
T 2ct2_A 9 LDALR-EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRIT--SLTQLTDNLTV 80 (88)
T ss_dssp CCCCC-SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCCS--STTTSEECTTT
T ss_pred hhhcc-CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccch--hHHHHHHHHHH
Confidence 33443 4799999999998444449999999999999999999863 2468999999988643 45677777654
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=7.8e-13 Score=103.44 Aligned_cols=64 Identities=27% Similarity=0.602 Sum_probs=50.4
Q ss_pred ccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHH
Q psy11858 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~ 106 (267)
.++++.|+||++.|. +|++++|||+||..||..|+.. ...||.|+..+... +.++.+..+++.
T Consensus 50 ~~~~~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~-------~~~~~~~~~i~~ 112 (138)
T 4ayc_A 50 LENELQCIICSEYFI----EAVTLNCAHSFCSYCINEWMKR------KIECPICRKDIKSK-------TYSLVLDNCINK 112 (138)
T ss_dssp HHHHSBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTTT------CSBCTTTCCBCCCE-------EECHHHHHHHHH
T ss_pred ccccCCCcccCcccC----CceECCCCCCccHHHHHHHHHc------CCcCCCCCCcCCCC-------CCccchhHHHHH
Confidence 345789999999998 9999999999999999998863 36799999987532 345555555554
Q ss_pred H
Q psy11858 107 M 107 (267)
Q Consensus 107 ~ 107 (267)
+
T Consensus 113 ~ 113 (138)
T 4ayc_A 113 M 113 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=90.13 Aligned_cols=50 Identities=20% Similarity=0.553 Sum_probs=44.1
Q ss_pred ccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.++ |||+||..||..|+... +...||.|+.....
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLES----DEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT----TCEECSSSCCEECTTHHHHHHHHS----SSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHHhc----CCCcCCCCCCcCCC
Confidence 4899999999999 999999 99999999999999852 35789999997653
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-13 Score=97.21 Aligned_cols=54 Identities=30% Similarity=0.679 Sum_probs=46.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.++|||+||..|+..|+.......+...||.|+..+..
T Consensus 18 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT----QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS----SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC----CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4799999999998 99999999999999999998863222347899999999874
No 17
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=1.6e-12 Score=97.30 Aligned_cols=74 Identities=19% Similarity=0.465 Sum_probs=59.0
Q ss_pred ccccccccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHH
Q psy11858 23 YEDFNESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN 101 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~ 101 (267)
.+.+.+ .+.|+||++.|. +|+.+ +|||+||..||..|+.. ...||.|+..+... ..+..+..|..+.
T Consensus 9 ~~~~~~-~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~-~~~~~l~~n~~l~ 76 (108)
T 2ckl_A 9 ITELNP-HLMCVLCGGYFI----DATTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKT-RPLLNIRSDKTLQ 76 (108)
T ss_dssp HHHHGG-GTBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSS-CGGGGEEECHHHH
T ss_pred hhccCC-cCCCccCChHHh----CcCEeCCCCChhhHHHHHHHHHh------CCcCcCCCcccccc-CcccccCcCHHHH
Confidence 344443 899999999998 99998 99999999999999873 37899999998742 1223567888888
Q ss_pred HHHHHHH
Q psy11858 102 QLLDLMS 108 (267)
Q Consensus 102 ~~v~~~~ 108 (267)
++++.+.
T Consensus 77 ~~i~~~~ 83 (108)
T 2ckl_A 77 DIVYKLV 83 (108)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 8887764
No 18
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=9e-14 Score=98.01 Aligned_cols=54 Identities=26% Similarity=0.654 Sum_probs=45.2
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhcc-CCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT-RETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~-~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|++++|||+||..|+..|+.... .......||.|+..+..
T Consensus 11 ~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECS----SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccC----CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4899999999998 999999999999999998887421 11347899999999874
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.4e-12 Score=84.00 Aligned_cols=46 Identities=30% Similarity=0.949 Sum_probs=40.4
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
++.+.|+||++.|. +|+.++|||+||..||.+|+... .....||.|
T Consensus 18 ~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHC---SSCCCCSCC
T ss_pred ccCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcC---CCCCcCcCC
Confidence 34899999999999 99999999999999999999852 356789988
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7.9e-12 Score=88.51 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=43.2
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.+.|+||++.|. +|++++|||+||..|+..|+.. ...||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ----NPVVTKCRHYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc----CeeEccCCCHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 34789999999998 9999999999999999999974 368999999986
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.5e-12 Score=97.86 Aligned_cols=51 Identities=29% Similarity=0.813 Sum_probs=44.8
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.++|||+||..|+..|+... .+...||.|+..+..
T Consensus 20 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK----EPVSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS----SCCBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc----CeEECCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCH
Confidence 3789999999998 99999999999999999999853 345799999998874
No 22
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=1.1e-12 Score=99.36 Aligned_cols=71 Identities=24% Similarity=0.518 Sum_probs=54.8
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCC--CCCCCCCchHHHHHHHH
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR--GGVAALPPSFLVNQLLD 105 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~--~~v~~l~~n~~l~~~v~ 105 (267)
.+++.|+||++.|. +|++++|||+||..||..|+.. +...||.|+..+.... .....+..|..+..++.
T Consensus 13 ~~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~ 83 (115)
T 3l11_A 13 LSECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEK-----ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ 83 (115)
T ss_dssp HHHHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCT-----TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred CCCCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhH-----CcCCCCCCCcccCccccccccccchhhHHHHHHHH
Confidence 34799999999998 9999999999999999988862 4589999999986310 01134566777777766
Q ss_pred HH
Q psy11858 106 LM 107 (267)
Q Consensus 106 ~~ 107 (267)
.+
T Consensus 84 ~~ 85 (115)
T 3l11_A 84 KH 85 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.6e-12 Score=86.36 Aligned_cols=52 Identities=27% Similarity=0.863 Sum_probs=45.0
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.+.+.|+||++.|. +|+.++|||+||..|+..|+... .....||.|+..+..
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence 34799999999998 99999999999999999998631 356799999998874
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=6.1e-12 Score=101.22 Aligned_cols=67 Identities=28% Similarity=0.588 Sum_probs=57.1
Q ss_pred ccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+.+.|+||++.|. +|+.+ +|||+||..||..|+.. +...||.|+..+... ..+..|..+.++++.+
T Consensus 53 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDMLK----NTMTTKECLHRFCADCIITALRS-----GNKECPTCRKKLVSK----RSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCCSG----GGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHhh----CcCEeCCCCChhHHHHHHHHHHh-----CcCCCCCCCCcCCCc----ccCCcCHHHHHHHHHH
Confidence 4789999999999 99997 99999999999999983 357899999988532 4578899999998887
Q ss_pred H
Q psy11858 108 S 108 (267)
Q Consensus 108 ~ 108 (267)
.
T Consensus 120 ~ 120 (165)
T 2ckl_B 120 Y 120 (165)
T ss_dssp C
T ss_pred H
Confidence 4
No 25
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.14 E-value=1.7e-11 Score=99.44 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=59.3
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+++.||||+.+|. +|++++|||+||+.||..|+... + ..||.|+.++.. ..+.+|..+.++++...
T Consensus 105 ~~f~CPI~~elm~----DPV~~~~Ghtfer~~I~~~l~~~----~-~tcP~t~~~l~~-----~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 105 DYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRV----G-HFDPVTRSPLTQ-----DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHT----C-SBCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred HhhcccCccccCC----CCeECCCCCEECHHHHHHHHHhC----C-CCCCCCcCCCCh-----hhCcchHHHHHHHHHHH
Confidence 4899999999999 99999999999999999999852 2 269999998875 57899999999999876
Q ss_pred hh
Q psy11858 109 RQ 110 (267)
Q Consensus 109 ~~ 110 (267)
..
T Consensus 171 ~~ 172 (179)
T 2f42_A 171 QE 172 (179)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=83.44 Aligned_cols=49 Identities=24% Similarity=0.684 Sum_probs=43.5
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.+. +|+.++|||+||..|+..|+. .....||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC----SPKQTECGHRFCESCMAALLS-----SSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES----SCCCCSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc----CeeECCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCCh
Confidence 4799999999998 999999999999999999996 245789999998763
No 27
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=4.2e-12 Score=83.59 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=43.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCC
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGV 91 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v 91 (267)
+.+.|+||++.|. +|++++|||+||..|+.. ....||.|+..+..+.+++
T Consensus 5 ~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 5 QFLRCQQCQAEAK----CPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSCB----CCSCSTTSCCSBTTTCSS---------SSSSCSSCCSSSSCCSSCC
T ss_pred cCCCceEeCCccC----CeEEcCCCCcccHHHHcc---------CCCCCCcCCcEeecCCcCc
Confidence 4799999999999 999999999999999865 2468999999998765544
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2e-11 Score=84.46 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=43.1
Q ss_pred ccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.+ +|||+||..||..|+.. ...||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI----DATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS----SCEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH----CcCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCc
Confidence 4899999999998 89998 99999999999999974 3689999998874
No 29
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=1.5e-11 Score=106.61 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=58.4
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS 108 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~~ 108 (267)
+.+.||||+++|. +|++++|||+||..||..|+... ...||.|+.++.. ..+.+|..+.++++.+.
T Consensus 207 ~~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~~~~~-----~~~cP~~~~~~~~-----~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 207 DYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRV-----GHFNPVTRSPLTQ-----EQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp STTBCTTTCSBCS----SEEECSSCCEEETTHHHHHHHHT-----CSSCTTTCCCCCG-----GGCEECHHHHHHHHHHH
T ss_pred cccCCcCcCCHhc----CCeECCCCCEECHHHHHHHHHHC-----CCCCcCCCCCCch-----hcCcccHHHHHHHHHHH
Confidence 4799999999999 99999999999999999999852 2349999998874 56889999999999876
Q ss_pred h
Q psy11858 109 R 109 (267)
Q Consensus 109 ~ 109 (267)
.
T Consensus 273 ~ 273 (281)
T 2c2l_A 273 S 273 (281)
T ss_dssp T
T ss_pred H
Confidence 4
No 30
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.11 E-value=6.8e-12 Score=92.67 Aligned_cols=95 Identities=18% Similarity=0.357 Sum_probs=65.8
Q ss_pred ccceecccccc-cccCCCCcee--cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHH
Q psy11858 29 SFLTCGTCLCM-YDGGEHTPKL--LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLD 105 (267)
Q Consensus 29 ~~l~C~iC~~~-~~~~~r~P~~--L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~ 105 (267)
+++.|++|.+. +. +|+. ++|+|+||..|+..++... ..+ ....+ ......
T Consensus 2 ee~~C~~C~~~~~~----~av~~C~~C~~~~C~~Cl~~~h~~~----~~~------~~h~l-----~~~~~~-------- 54 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ----DAVKTCVTCEVSYCDECLKATHPNK----KPF------TGHRL-----IEPIPD-------- 54 (101)
T ss_dssp CCCBCTTCCSSSCC----BCCEEETTTTEEECHHHHHHHSCSC----SSS------TTCCB-----SSCCCS--------
T ss_pred CCCCCcCCCCCCCC----CceEECCcCChHHhHHHCHHHhccC----Ccc------CCCee-----eccccc--------
Confidence 36899999965 55 8888 9999999999999844321 101 01111 000000
Q ss_pred HHHhhcccCCCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCceeeHH
Q psy11858 106 LMSRQRRHIIPKCSTHN-SQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFS 161 (267)
Q Consensus 106 ~~~~~~~~~~~~C~~H~-~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ 161 (267)
.......|+.|+ +.+.+||.+|+.+||..|...++|+ +|.+.+++
T Consensus 55 -----~~~~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 55 -----SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp -----CCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTS------SSCBCCCC
T ss_pred -----cCccCCcCcCcCCCcceEECCCCCCccchhcCCCCCcC------CCCeecCC
Confidence 011346899995 6778999999999999999855799 99987763
No 31
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=2.1e-11 Score=92.70 Aligned_cols=65 Identities=23% Similarity=0.461 Sum_probs=51.8
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHH
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~ 106 (267)
.+.+.|+||.+.+. +|+.++|||+||..||..|+... ...||.|+..+.. ..+..+..+.+.+..
T Consensus 16 ~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 16 ESKYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLE-----NQLFPDNFAKREILS 80 (118)
T ss_dssp CGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCG-----GGCEECHHHHHHHHT
T ss_pred CCCCCCCcCChhhc----CeEECCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCH-----HhcccCHHHHHHHcc
Confidence 34799999999998 99999999999999999999853 2489999998874 344556665555543
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=3.6e-11 Score=91.01 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=43.9
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +|+.++|||+||..||..|+.. ....||.|+..+..
T Consensus 22 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILA----DPVETSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhc----CcEEcCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCH
Confidence 3799999999998 9999999999999999999985 24689999999874
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=3.4e-11 Score=81.55 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=41.7
Q ss_pred ccceeccccc-ccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~-~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+++.|+||++ .|......++.++|||+||..|+.+|+.. +...||.|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----CCCcCCCCCCcccc
Confidence 3689999999 88822122257899999999999999873 45789999998863
No 34
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.05 E-value=4.7e-11 Score=101.54 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCccccccccceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCC--CCceeecCCCCCCCCCch
Q psy11858 21 INYEDFNESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPI--CREQITIPRGGVAALPPS 97 (267)
Q Consensus 21 ~~~~~~~~~~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~--C~~~~~~~~~~v~~l~~n 97 (267)
+.+..... +++||||+..|. +|++. .|||+||+.||..+|.. .+...||. |+..+.. ..|.+|
T Consensus 173 I~v~~~~~-el~CPIcl~~f~----DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~-----~dL~pN 238 (267)
T 3htk_C 173 LQIEGGKI-ELTCPITCKPYE----APLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSM-----RDFVRD 238 (267)
T ss_dssp CCCCSSBC-CSBCTTTSSBCS----SEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECG-----GGEEEC
T ss_pred ceecCCce-eeECcCccCccc----CCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCch-----hhCCcC
Confidence 33344433 899999999999 99985 99999999999999974 35689999 9998875 578899
Q ss_pred HHHHHHHHHHHh
Q psy11858 98 FLVNQLLDLMSR 109 (267)
Q Consensus 98 ~~l~~~v~~~~~ 109 (267)
..+.++++....
T Consensus 239 ~~L~~lve~~k~ 250 (267)
T 3htk_C 239 PIMELRCKIAKM 250 (267)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=6.4e-11 Score=83.24 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=42.2
Q ss_pred cccceecccccccccCCCCceecC--CCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~--C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+++++||||++.+.. .++.+++ |||+||..|+..+|.. ....||.||+.+..
T Consensus 9 ~~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~-----~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTS-----SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence 458999999998852 2566665 9999999999999862 45899999999874
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=7.9e-11 Score=77.61 Aligned_cols=45 Identities=27% Similarity=0.784 Sum_probs=39.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
+.+.|+||++.|. +|+.++|||+||..||..|+... .....||.|
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK----EPVIIECGHNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS----SCCCCSSCCCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred cCCCCccCCcccC----ccEeCCCCCccCHHHHHHHHHhc---CCCCCCCCC
Confidence 4789999999998 99999999999999999997631 256789987
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=3.1e-11 Score=94.64 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=43.3
Q ss_pred cccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
++.+.|+||++.|. +|+.++|||+||..||..|+.. +...||.|+....
T Consensus 29 ~~~~~C~IC~~~~~----~pv~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLR----RPFQAQCGHRYCSFCLASILSS-----GPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHGGG-----SCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhc----CcEECCCCCccCHHHHHHHHhc-----CCCCCCCCCCccc
Confidence 34899999999999 9999999999999999999873 4578999999754
No 38
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.99 E-value=5.9e-11 Score=81.58 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=42.1
Q ss_pred ccceecccccccccCCCCc-------eecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTP-------KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P-------~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|. +| +.++|||.||..|+..|+... ..||.|+..+..
T Consensus 9 ~~~~C~IC~~~~~----~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYS----EIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHH----HHHTTTCCEEECTTSCEEEHHHHHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCcccChhhh----ccccccCCeEeCCCCChHhHHHHHHHHHcC------CCCCCCCCccCh
Confidence 4789999999998 66 899999999999999999852 589999999874
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=6.3e-11 Score=81.66 Aligned_cols=47 Identities=32% Similarity=0.772 Sum_probs=42.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|+||++.+. +|+.++|||.||..|+..|+.. ...||.|+..+.
T Consensus 14 ~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWL------GKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTC------SSBCSSSCCBCC
T ss_pred CCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHC------CCcCcCcCchhC
Confidence 4689999999998 9999999999999999988763 378999999876
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1e-10 Score=79.77 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=41.8
Q ss_pred cccceecccccccccC---CCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGG---EHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~---~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.+.|+||++.|... .+.++.++|||.||..||..|+.. ...||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccC
Confidence 3478999999999821 122388999999999999999885 358999998865
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.94 E-value=1.7e-10 Score=75.15 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=43.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|+||++.|......++.++|||.||..|+..|+... ..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------CcCCCCCCcCC
Confidence 3688999999997555568999999999999999999852 78999998753
No 42
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.91 E-value=2.3e-10 Score=92.35 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=51.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~ 106 (267)
+.+.|+||++.|. +|++++|||+||..|+..|+... ...||.|+..+.. ..+..+..+.+.+..
T Consensus 17 ~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 17 SKYECPICLMALR----EAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLE-----NQLFPDNFAKREILS 80 (170)
T ss_dssp GGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCG-----GGCEECHHHHHHHHT
T ss_pred CCCCCCCCChhhc----CcEECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcch-----hhhhhhHHHHHHHhh
Confidence 4899999999999 99999999999999999999853 2489999998874 234455555555543
No 43
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.90 E-value=2e-10 Score=77.10 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=41.9
Q ss_pred ccceeccccccccc---CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~---~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|.. ..+.++.++|||.||..|+.+|+.. ...||.|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCCc
Confidence 36899999999982 1223388999999999999999985 3589999998763
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.87 E-value=3.2e-10 Score=77.25 Aligned_cols=47 Identities=28% Similarity=0.671 Sum_probs=40.8
Q ss_pred ccceecccccccccCCCCc-eecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P-~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|+||++.+. +| +.++|||.||..|+..|+... ..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS----NYSMALPCLHAFCYVCITRWIRQN------PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC----SCEEETTTTEEESTTHHHHHHHHS------CSTTTTCCCCC
T ss_pred CCCCCeeCCcccc----CCcEecCCCCeeHHHHHHHHHhCc------CcCcCCChhhH
Confidence 4678999999998 75 789999999999999998742 58999998875
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=6.4e-10 Score=77.36 Aligned_cols=53 Identities=25% Similarity=0.701 Sum_probs=42.0
Q ss_pred ccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+...|+||++.|..+ ...+.++|+|.||..||..|+... ..||.|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKAN------RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHHC------SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHcC------CcCcCcCCcCCC
Confidence 34578999999999721 122778999999999999999853 489999998763
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.83 E-value=4.8e-10 Score=73.02 Aligned_cols=50 Identities=28% Similarity=0.745 Sum_probs=40.2
Q ss_pred ccceecccccccccCCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|+||++.|..+ ..++.++ |||.||..|+..|+.. ...||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTT------CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHc------CCcCcCCCCEeE
Confidence 468999999999732 2377787 9999999999998863 358999998754
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=74.00 Aligned_cols=51 Identities=27% Similarity=0.656 Sum_probs=41.8
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+...|+||+..|.. ...++.++|||.||..|+..|+... ..||.|+..+..
T Consensus 13 ~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLITN------KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHHC------SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHcC------CCCcCcCccccC
Confidence 46899999998852 2257889999999999999999853 369999998873
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=6.9e-10 Score=77.70 Aligned_cols=51 Identities=31% Similarity=0.615 Sum_probs=41.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.+.|+||++.|... ...+.++|||.||..||..|+.. ...||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLEQ------HDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHTT------TCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHHc------CCcCcCcCCccCC
Confidence 478999999999721 13366799999999999999873 2589999998874
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=2.6e-10 Score=79.28 Aligned_cols=43 Identities=28% Similarity=0.695 Sum_probs=38.6
Q ss_pred ccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|+||++.+. +|++++|||. ||..|+..+ ..||.|+..+.
T Consensus 23 ~~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----------DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----------SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----------ccCCCcCcCcc
Confidence 4789999999998 9999999999 999999755 57999999875
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.79 E-value=1.1e-09 Score=79.21 Aligned_cols=50 Identities=28% Similarity=0.596 Sum_probs=41.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|+||++.|..+ ..++.++|||.||..||..|+.. ...||.|+..+.
T Consensus 39 ~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQK------SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTT------TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHc------CCcCcCcCccCC
Confidence 478999999998722 13788999999999999999873 248999999875
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=1e-09 Score=84.37 Aligned_cols=49 Identities=27% Similarity=0.659 Sum_probs=42.8
Q ss_pred cccceecccccccccCCCCc-------eecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 28 ESFLTCGTCLCMYDGGEHTP-------KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P-------~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.+.+.|+||++.|. +| +.++|||+||..||.+|+.. ...||.|++.+..
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYS----EIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHH----HHHHTTCCEEEETTCCEEEHHHHHHHHTT------CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhh----CccccccCeEecCCCChhhHHHHHHHHHh------CCCCCCCCCcCcc
Confidence 35799999999998 66 99999999999999999874 2489999998864
No 52
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=5.3e-10 Score=81.34 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=41.5
Q ss_pred ccceecccccccccCCCCceec---CCCCHHHHhhHHHHHHhccC--CCCccccCC--CCcee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTR--ETGTLRCPI--CREQI 84 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L---~C~HsfC~~Ci~~~~~~~~~--~~~~~~CP~--C~~~~ 84 (267)
+.++|+||++.+. .|.++ +|||.||..|+..+|..... ....+.||. |+...
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 4689999999998 77654 79999999999999986321 124689999 99883
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.7e-10 Score=76.88 Aligned_cols=46 Identities=33% Similarity=0.787 Sum_probs=40.4
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|+||++.+. + +.++|||.||..|+..|+. ....||.|+..+.
T Consensus 14 ~~~~C~IC~~~~~----~-~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRA----D-LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCC----S-EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTT
T ss_pred CCCCCeeCCcCcc----C-cccCCCCcccHHHHHHHHH------CcCcCCCcCCccc
Confidence 3789999999998 6 8999999999999998876 3578999998876
No 54
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=3.1e-09 Score=73.57 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=39.3
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
...|+||++.|... ...+.++|+|.||..||..|+... ..||.|+..+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~~------~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEVR------KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHHC------SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHcC------CcCCCcCcccc
Confidence 68999999999721 122445999999999999999853 38999999876
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.5e-10 Score=76.60 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=37.9
Q ss_pred ccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|+||++.+. +|++++|||. ||..|+.. ...||.|+..+.
T Consensus 24 ~~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA----------VDKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHH----------CSBCTTTCCBCC
T ss_pred CCCCCCcCCCCCC----CEEEecCCCHHHHHHHhhC----------CCCCccCCceec
Confidence 4789999999998 9999999999 99999953 257999999876
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.68 E-value=8.6e-09 Score=77.43 Aligned_cols=56 Identities=25% Similarity=0.494 Sum_probs=41.5
Q ss_pred cceecccccccccCC--------------CCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGE--------------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~--------------r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...|+||++.|.... ...+.++|+|.||..||..|+.... ......||.|+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCC
Confidence 468999999997211 1112789999999999999996421 1245799999998864
No 57
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.55 E-value=1.3e-08 Score=70.28 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 114 IIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 114 ~~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
....|+.|++.+.+||.+|+.+||..|.. ++|+ +|.++++.+|+++++++|.
T Consensus 17 ~~~~C~~H~e~l~lfC~~d~~~iC~~C~~-~~H~------~H~~~~l~ea~~~~k~~L~ 68 (72)
T 2csv_A 17 EARKCPVHGKTMELFCQTDQTCICYLCMF-QEHK------NHSTVTVEEAKAEKETESG 68 (72)
T ss_dssp SCCBCTTTCCBCCEEESSSCCEECHHHHH-TTTS------SSCEEEHHHHHHHHSSCCC
T ss_pred ccCcCcccCCceEEEeCCCCeEEccccCC-CCCC------CCCEecHHHHHHHHHHHHH
Confidence 34689999988889999999999999998 5799 9999999999998877654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.51 E-value=2.2e-08 Score=67.18 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=40.7
Q ss_pred cccceecccccccccCCCCceec--CCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 28 ESFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 28 ~~~l~C~iC~~~~~~~~r~P~~L--~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+....|+||++.+. +++++ ||||. ||..|+..++.. ...||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKA------GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHT------TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHh------CCcCCCcCchhh
Confidence 34678999999887 89887 99998 999999998863 268999999875
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.3e-08 Score=69.38 Aligned_cols=49 Identities=33% Similarity=0.661 Sum_probs=41.1
Q ss_pred ccccccccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 23 ~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+....+...|.||++.+. +++++||||. ||..|+... ..||.||..+.
T Consensus 8 ~e~~~~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~ 57 (68)
T 2ea5_A 8 VEPSEENSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKYF----------QQCPMCRQFVQ 57 (68)
T ss_dssp CCCSCCCSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHHC----------SSCTTTCCCCC
T ss_pred ccccCCCCCCCCCcCcCCC----CEEEECCCChhhhHHHHhcC----------CCCCCCCcchh
Confidence 3445556789999999888 9999999999 999999732 47999999876
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.7e-08 Score=70.18 Aligned_cols=51 Identities=24% Similarity=0.523 Sum_probs=38.9
Q ss_pred cceeccccccccc----------CCCCceecC-CCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG----------GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~----------~~r~P~~L~-C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...|+||++.|.+ ....++.++ |||.|+..||.+|+..+ ..||.||..+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------NRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------CBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------CCCCCcCCCcch
Confidence 5678888888862 222355664 99999999999998742 489999998763
No 61
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.50 E-value=2.4e-09 Score=72.13 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=45.7
Q ss_pred CCCCCCCC-CCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHH
Q psy11858 114 IIPKCSTH-NSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILL 172 (267)
Q Consensus 114 ~~~~C~~H-~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~ 172 (267)
....|+.| ++.+.+||.+|+.+||..|...++|+ +|.++++.+|+++++++|.
T Consensus 7 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 7 GHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp CCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSSCCCCSS
T ss_pred CCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHHHHHHHH
Confidence 45689999 77888999999999999999876799 9999999999887666543
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.49 E-value=2.7e-08 Score=89.58 Aligned_cols=48 Identities=33% Similarity=0.702 Sum_probs=42.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
...|+||.+.+. +|+.++|||.||..|+..|... ....||.||..+..
T Consensus 332 ~~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC----CEEEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC----CeEEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence 479999999998 9999999999999999988873 34689999998763
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.48 E-value=2.6e-08 Score=67.06 Aligned_cols=47 Identities=21% Similarity=0.603 Sum_probs=40.3
Q ss_pred ccceecccccccccCCCCceec--CCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L--~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|.||++.+. +++++ ||||. ||..|+..++.. ...||.||..+.
T Consensus 7 ~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKR------NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHT------TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHc------CCcCCCcCcchh
Confidence 3678999999988 99987 99999 899999998873 257999999875
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=2.9e-08 Score=76.13 Aligned_cols=55 Identities=24% Similarity=0.585 Sum_probs=43.9
Q ss_pred cccccceeccccccccc---CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 26 FNESFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 26 ~~~~~l~C~iC~~~~~~---~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.++.+.|+||++.|.. ..+.++.++|||.||..|+..|+.. ...||.|+..+..
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 125 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH------CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc------CCCCCCCCCcCCh
Confidence 34567899999999982 1223388999999999999999985 2589999998863
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.45 E-value=1.3e-08 Score=71.56 Aligned_cols=43 Identities=28% Similarity=0.782 Sum_probs=37.9
Q ss_pred ccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+...|+||++.+. +|+++||||. ||..|+..+ ..||.|+..+.
T Consensus 17 ~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEI----NSTFCPCGHTVCCESCAAQL----------QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBC----CEEEETTCBCCBCHHHHTTC----------SBCTTTCCBCC
T ss_pred CCCEeEEeCcccC----cEEEECCCCHHHHHHHHHhc----------CcCCCCCchhh
Confidence 3689999999998 9999999999 999999744 37999999876
No 66
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=98.44 E-value=2.2e-08 Score=64.78 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=40.2
Q ss_pred CCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHH
Q psy11858 114 IIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAI 164 (267)
Q Consensus 114 ~~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~ 164 (267)
....|+.|++.+.+||.+|+.+||..|....+|+ +|.++++.+|+
T Consensus 7 ~~~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~ 51 (53)
T 2did_A 7 GESLCPQHHEALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPS 51 (53)
T ss_dssp SCCBCTTTCCBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTT
T ss_pred CCCcChhhCCeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHh
Confidence 3568999998888999999999999999877899 99999998765
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.40 E-value=5.3e-08 Score=72.26 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=40.6
Q ss_pred ccccceecccccccccC-------------CCC-ceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 27 NESFLTCGTCLCMYDGG-------------EHT-PKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 27 ~~~~l~C~iC~~~~~~~-------------~r~-P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+.-.|+||.+.|... +.. .+.++|+|.|+..||..|+.. ...||.|+....+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF 101 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBCCE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcCCCCccee
Confidence 33467899999998721 111 244799999999999999873 3689999998653
No 68
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=98.39 E-value=1.3e-07 Score=57.95 Aligned_cols=39 Identities=31% Similarity=0.781 Sum_probs=34.6
Q ss_pred CCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceee
Q psy11858 115 IPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIP 159 (267)
Q Consensus 115 ~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~ 159 (267)
...|+.|++.+.+||.+|+.+||..|...++|+ +|.+.+
T Consensus 3 ~~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~ 41 (42)
T 1fre_A 3 LEKCSEHDERLKLYCKDDGTLSCVICRDSLKHA------SHNFLP 41 (42)
T ss_dssp -CCCCSSCSSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCC
T ss_pred cccchhhCCeeeEEeCCCCeEEeccCCCCCCCC------CCcEec
Confidence 467999998888999999999999999977899 998765
No 69
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=98.38 E-value=3.8e-10 Score=80.39 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=47.8
Q ss_pred CCCCCCCC-CCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHHHHHHHHHHHHH
Q psy11858 114 IIPKCSTH-NSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEILLYKA 175 (267)
Q Consensus 114 ~~~~C~~H-~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~~~~~e~l~~~~ 175 (267)
....|+.| ++.+.+||.+|+.+||..|...++|+ +|.+.++.+|+++++++|...+
T Consensus 17 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~~k~~L~~~l 73 (84)
T 2dja_A 17 RGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEKLKQTLEMNL 73 (84)
T ss_dssp SCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCCCCCCCCCCC
T ss_pred CCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHHHHHHHHHHH
Confidence 34689999 57788999999999999999977899 9999999999988877666443
No 70
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=98.36 E-value=7.7e-08 Score=61.35 Aligned_cols=44 Identities=32% Similarity=0.662 Sum_probs=37.7
Q ss_pred CCCCCCCC-CCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHH
Q psy11858 114 IIPKCSTH-NSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAI 164 (267)
Q Consensus 114 ~~~~C~~H-~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~ 164 (267)
....|+.| ++.+.+||.+|+.+||..|... +|+ +|.+.++.+|+
T Consensus 5 ~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~-~H~------~H~~~~l~ea~ 49 (50)
T 2yvr_A 5 RTVYCNVHKHEPLVLFCESCDTLTCRDCQLN-AHK------DHQYQFLEDAV 49 (50)
T ss_dssp CSCBCSSSTTCBCCEEETTTTEEECHHHHHT-TTT------TCCEEETTC--
T ss_pred CCCcCcCCCCCCEEEEeCCCCEEEecccCCC-cCC------CCceecHHHHh
Confidence 35679999 7788899999999999999986 799 99999998775
No 71
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=7.1e-08 Score=63.80 Aligned_cols=44 Identities=30% Similarity=0.637 Sum_probs=39.4
Q ss_pred CCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeHHHHH
Q psy11858 115 IPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAI 164 (267)
Q Consensus 115 ~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ea~ 164 (267)
...|+.|++.+.+||.+|+.+||..|....+|+ +|.+.++.+|+
T Consensus 14 ~~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~ 57 (59)
T 2yrg_A 14 VDHCARHGEKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS 57 (59)
T ss_dssp SSBCTTTCCBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred CccChhhCceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence 467999999988999999999999999977899 99999987654
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.19 E-value=1.6e-07 Score=83.83 Aligned_cols=43 Identities=35% Similarity=0.824 Sum_probs=38.7
Q ss_pred ccceecccccccccCCCCceecCCCCH-HHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~Hs-fC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.|+||.+.+. +|+++||||. ||..|+..+ ..||.||..+.
T Consensus 294 ~~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL----------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC----------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC----------CcCCCCCCCcc
Confidence 4799999999998 9999999999 999999754 47999999876
No 73
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=98.09 E-value=7.4e-07 Score=56.20 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=36.1
Q ss_pred CCCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCceeeHH
Q psy11858 114 IIPKCSTHN-SQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFS 161 (267)
Q Consensus 114 ~~~~C~~H~-~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l~ 161 (267)
....|+.|+ +.+.+||.+|+.+||..|...++|+ +|.+++++
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 346799999 7788999999999999998665799 99998763
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.08 E-value=6.5e-07 Score=59.52 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=41.0
Q ss_pred cceecccccccccCCCCceec-CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L-~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.+.||||++.+. +|+.+ ++||+|++.||.+|+... -.||..+.....
T Consensus 3 ~~~CpIs~~~m~----dPV~~~~sG~~yer~~I~~~l~~~------~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR----RPVLSPKSRTIFEKSLLEQYVKDT------GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS----SEEEETTTTEEEEHHHHHHHHHHH------SBCTTTCCBCCG
T ss_pred eEEecCCCCCCC----CCEEeCCCCcEEcHHHHHHHHHhC------CCCcCCcCCCCh
Confidence 478999999999 99999 999999999999999853 249999988764
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.1e-06 Score=61.74 Aligned_cols=53 Identities=30% Similarity=0.624 Sum_probs=43.6
Q ss_pred ccceecccccccccCCCCceecCCC-----CHHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~-----HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
+...|.||+..|..+ +++++||. |.|...||.+|+... +...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~--~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWIKSS----DTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSS--SCEECSSSCCSSSCCEETTHHHHHHHHH----CCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCC--CeeEeccccCCcCCeeCHHHHHHHHhhC----CCCCCCCCCCeeecC
Confidence 367899999888633 67889996 999999999999863 347899999998753
No 76
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.04 E-value=5.4e-07 Score=67.87 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=0.9
Q ss_pred ccceeccccccccc-------------CCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDG-------------GEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~-------------~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+.-.|+||++.|.+ ++..++. ++|+|.|+..||..|+.. ...||.|+.....
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------CCcCCCCCCeeee
Confidence 35689999999972 1112333 589999999999999874 3589999998653
No 77
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=9.4e-07 Score=57.89 Aligned_cols=41 Identities=27% Similarity=0.695 Sum_probs=35.8
Q ss_pred CCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCceeeH
Q psy11858 114 IIPKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160 (267)
Q Consensus 114 ~~~~C~~H~~~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~~l 160 (267)
....|..|++.+.+||.+|+.+||..|....+|+ +|.++++
T Consensus 17 ~~~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~------~H~~~~l 57 (57)
T 2egm_A 17 DQGICPKHQEALKLFCEVDEEAICVVCRESRSHK------QHSVVPL 57 (57)
T ss_dssp TTSBCTTTCCBCCEEETTTTEEECHHHHHSHHHH------SSCEECC
T ss_pred ccCcChhhCceeeEEcCCCCcEEecccCCCCCCC------CCcEecC
Confidence 3467999998888999999999999999876799 9988753
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=1.1e-05 Score=58.03 Aligned_cols=46 Identities=24% Similarity=0.647 Sum_probs=38.6
Q ss_pred eecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 32 ~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.|++|...+.. -.+++||.|.||.+|+..++.. +.-.||.|+.++.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~-----~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKK-----GDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhc-----cCCCCcCcCCeee
Confidence 58999888763 5688999999999999998873 4578999999876
No 79
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=6.9e-05 Score=51.53 Aligned_cols=56 Identities=21% Similarity=0.556 Sum_probs=43.0
Q ss_pred cccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 24 ~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+.+..-.|+||+..+..+.+-+ .|+|.|=..||.+|+..+ +...||.|+.....
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~----~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSN----AEPRCPHCNDYWPH 64 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTC----SSCCCTTTCSCCCS
T ss_pred hhccCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhc----CCCCCCCCcCcCCC
Confidence 344455788999999997443333 899999999999999742 34789999988763
No 80
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.87 E-value=0.00047 Score=45.28 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=38.9
Q ss_pred ccceecccccccccCCCCceecCCC--C---HHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS--H---TVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~--H---sfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+...|.||+...+ +|.++||. + .|=..|+.+|.... +...||.|+..+.+
T Consensus 5 ~~~~CrIC~~~~~----~~l~~PC~C~gs~~~~H~~Cl~~W~~~~----~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG----NERFRACGCTGELENVHRSCLSTWLTIS----RNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHHHHHHH----TCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC----CceecCcCCCCchhhhHHHHHHHHHHhC----CCCccCCCCCeeec
Confidence 4678999998755 67788965 3 56788999999853 45799999998763
No 81
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.30 E-value=0.0013 Score=58.00 Aligned_cols=58 Identities=19% Similarity=0.461 Sum_probs=42.9
Q ss_pred ccceecccccccccCCCCcee----cCCCCHHHHhhHHHHHHhccCC-----CCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCLSRIAASQTRE-----TGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~----L~C~HsfC~~Ci~~~~~~~~~~-----~~~~~CP~C~~~~~~ 86 (267)
....|+||+..+.+...-|.. ..|+|.|-..|+.+|+...+.+ ...-.||.|+.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 367899999998753444532 4799999999999999863211 123579999998874
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.50 E-value=0.11 Score=43.68 Aligned_cols=51 Identities=22% Similarity=0.541 Sum_probs=39.6
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
....|.+|+.+...+.+-| .|++.|=..|+..|+.. .+...||.|+..-..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~----~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQS----NAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTT----CSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHh----CCCCCCCCCCCCCCC
Confidence 3678999999997443343 39999999999999874 346799999998653
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.11 E-value=0.093 Score=35.88 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=36.9
Q ss_pred cceecccccccccCCCCceecCC----CCHHHHhhHHHHHHhccCCCCccccCCC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPC----SHTVCLHCLSRIAASQTRETGTLRCPIC 80 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C----~HsfC~~Ci~~~~~~~~~~~~~~~CP~C 80 (267)
.|.|.+|.+.+. +-.+..| +|.||.-|-+.+.+.++. +..+.||.-
T Consensus 15 ~l~CtlC~erLE----dtHFVQCPsv~~HkFCFpCsr~sIk~q~~-~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLE----DTHFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCS----STTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTTS
T ss_pred eeEeecchhhhc----cCceeeCCCccCCeeeccccHHHHHhcCC-CCcEECCCC
Confidence 689999999998 6666655 699999999998888754 467788863
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.11 E-value=0.24 Score=49.31 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.6
Q ss_pred ccceecccccccccCCCCceecCCC-CHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHHH
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM 107 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~-HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~~ 107 (267)
+++.|||=.++.. ||++++-| ++|=+..|.+|... ...||.=+.+... ..+.+|..+...++..
T Consensus 890 ~~F~cPIs~~lM~----DPVilpsG~~TydR~~I~~wl~~------~~tdP~Tr~~L~~-----~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 890 DEFLDPLMYTIMK----DPVILPASKMNIDRSTIKAHLLS------DSTDPFNRMPLKL-----EDVTPNEELRQKILCF 954 (968)
T ss_dssp GGGBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCG-----GGCEECHHHHHHHHHH
T ss_pred HHhCCcchhhHHh----CCeEcCCCCEEECHHHHHHHHhc------CCCCCCCCCCCCc-----ccccccHHHHHHHHHH
Confidence 3799999999999 99999998 69999999999973 3489999888874 5678999999999887
Q ss_pred Hhhc
Q psy11858 108 SRQR 111 (267)
Q Consensus 108 ~~~~ 111 (267)
...+
T Consensus 955 ~~~~ 958 (968)
T 3m62_A 955 KKQK 958 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.44 E-value=0.93 Score=31.59 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=38.3
Q ss_pred cceeccccccccc-CCCCceec--CCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~-~~r~P~~L--~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
.-+|.||.+.... .+-+|... .|+=..|+.|..--.. .+...||.|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-----eG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-----EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-----TSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-----ccCccccccCCcccc
Confidence 4689999988763 22244443 5888999999975444 467899999999973
No 86
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.52 E-value=0.9 Score=33.95 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=27.6
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||+.||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 457999999998776776777899999999964
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.68 E-value=0.95 Score=32.07 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=8.0
Q ss_pred ceecccccccc
Q psy11858 31 LTCGTCLCMYD 41 (267)
Q Consensus 31 l~C~iC~~~~~ 41 (267)
+.||.|...+.
T Consensus 33 ~~CP~Cq~eL~ 43 (101)
T 2jne_A 33 LHCPQCQHVLD 43 (101)
T ss_dssp CBCSSSCSBEE
T ss_pred ccCccCCCcce
Confidence 77888876664
No 88
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.57 E-value=0.92 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=28.1
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||..||..|..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 568999999998777777777899999999964
No 89
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.10 E-value=0.88 Score=31.28 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=27.7
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||..||..|..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 457999999998776776777899999999974
No 90
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=70.31 E-value=1.1 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=27.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||..||..|..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 467999999998777777777899999999964
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.70 E-value=0.85 Score=25.92 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=11.3
Q ss_pred ccceecccccccc
Q psy11858 29 SFLTCGTCLCMYD 41 (267)
Q Consensus 29 ~~l~C~iC~~~~~ 41 (267)
+.++||+|...|.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 3699999999987
No 92
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=67.34 E-value=4 Score=28.07 Aligned_cols=40 Identities=23% Similarity=0.617 Sum_probs=29.0
Q ss_pred CCCCCCCCCC--ccccccccccc----ccccccccCCCCCCCCCCCCCceee
Q psy11858 114 IIPKCSTHNS--QELLFCETCDT----VFCLQCTGGSNHSSTSGDSEHTIIP 159 (267)
Q Consensus 114 ~~~~C~~H~~--~~~~fC~~C~~----~iC~~C~~~~~H~~~~~~~~H~~~~ 159 (267)
....|..--. ...|.|.+|.. .||..|....+|. +|.+..
T Consensus 7 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~------gH~~~~ 52 (82)
T 3nis_A 7 TGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHV------NHHVCT 52 (82)
T ss_dssp TTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGT------TSCEEE
T ss_pred CCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcC------CceEEE
Confidence 3456765533 33488999864 6999999988899 998753
No 93
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.28 E-value=0.91 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.600 Sum_probs=28.7
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI 64 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~ 64 (267)
...|..|...|....|.-.--.||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 57899999999877777777899999999997543
No 94
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=66.94 E-value=1.2 Score=29.87 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=26.7
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
-.|.+|...|....|.-.--.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999998766666667899999999964
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.89 E-value=1.2 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.534 Sum_probs=27.5
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||..||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 467999999998777777777899999999953
No 96
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=63.25 E-value=1.2 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.3
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
...|.+|...|....|.-.--.||..||..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 457999999998776666667899999999964
No 97
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.96 E-value=4 Score=36.22 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=44.7
Q ss_pred cceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~ 106 (267)
.|.||+=...+. .|+. ..|.|.-|..- ..++..+ .......||.|.+.... .+|..+..+..++..
T Consensus 249 SL~CPlS~~ri~----~PvRg~~C~HlQCFDl-~sfL~~~-~~~~~W~CPIC~k~~~~-----~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMK----YPSKSINCKHLQCFDA-LWFLHSQ-LQIPTWQCPVCQIDIAL-----ENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCS----SEEEETTCCSSCCEEH-HHHHHHH-HHSCCCBCTTTCCBCCG-----GGEEEBHHHHHHHTT
T ss_pred eecCCCcccccc----ccCcCCcCCCcceECH-HHHHHHh-hcCCceeCCCCCcccCH-----HHeeEcHHHHHHHHh
Confidence 689999999998 8866 57999755532 2222221 11468999999998875 455666666555543
No 98
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=60.19 E-value=1.9 Score=30.42 Aligned_cols=46 Identities=26% Similarity=0.585 Sum_probs=33.2
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.-+-|..|-..+ +-.+--..|.+|++|+...+. ..-.||+|+....
T Consensus 27 G~~nCKsCWf~~-----k~LV~C~dHYLCl~CLtlmL~------~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFEN-----KGLVECNNHYLCLNCLTLLLS------VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCC-----SSEEECSSCEEEHHHHHHTCS------SSSEETTTTEECC
T ss_pred CcccChhhcccc-----CCeeeecchhhHHHHHHHHHh------hccCCcccCCcCC
Confidence 467799995433 222334568999999988775 4568999999886
No 99
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.17 E-value=2.6 Score=34.68 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=28.1
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
.-.|.+|...|....|.-.--.||..||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 468999999999777777777899999999964
No 100
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=56.59 E-value=6.3 Score=34.80 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=44.9
Q ss_pred cceecccccccccCCCCcee-cCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecCCCCCCCCCchHHHHHHHHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL 106 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~-L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~~~~v~~l~~n~~l~~~v~~ 106 (267)
.|.||+=...+. .|.. ..|.|.-|..- ..++.... ......||.|.+.... .+|..+..+..++..
T Consensus 215 SL~CPlS~~ri~----~P~Rg~~C~HlqCFDl-~sfL~~~~-~~~~W~CPiC~k~~~~-----~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLT----IPCRAVTCTHLQCFDA-ALYLQMNE-KKPTWICPVCDKKAAY-----ESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCS----SEEEETTCCCCCCEEH-HHHHHHHH-HSCCCBCTTTCSBCCG-----GGEEEBHHHHHHHTT
T ss_pred eeeCCCccceec----cCCcCCCCCCCccCCH-HHHHHHHh-hCCCeECCCCCcccCH-----HHeEEcHHHHHHHHh
Confidence 688999999998 8866 57999755532 22332211 1467999999998875 456666666666543
No 101
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=56.03 E-value=3 Score=28.14 Aligned_cols=38 Identities=26% Similarity=0.582 Sum_probs=26.9
Q ss_pred CCCCCCCC--ccccccccccc----ccccccccCCCCCCCCCCCCCceee
Q psy11858 116 PKCSTHNS--QELLFCETCDT----VFCLQCTGGSNHSSTSGDSEHTIIP 159 (267)
Q Consensus 116 ~~C~~H~~--~~~~fC~~C~~----~iC~~C~~~~~H~~~~~~~~H~~~~ 159 (267)
..|...-+ ...|.|.+|.. .+|..|....+|+ +|.+..
T Consensus 5 ~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~------gH~~~~ 48 (75)
T 3ny3_A 5 SLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHR------DHRYRM 48 (75)
T ss_dssp -CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGG------GSCEEE
T ss_pred CccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcC------CceEEE
Confidence 35655432 33488998864 7999999888899 998753
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.70 E-value=2.1 Score=35.07 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=27.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHH
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS 62 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~ 62 (267)
.-.|.+|...|....|.-.--.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 578999999998777777777899999998864
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.40 E-value=5.3 Score=27.34 Aligned_cols=12 Identities=25% Similarity=1.038 Sum_probs=9.8
Q ss_pred cccCCCCceeec
Q psy11858 75 LRCPICREQITI 86 (267)
Q Consensus 75 ~~CP~C~~~~~~ 86 (267)
..||.|+.....
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 579999998774
No 104
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.39 E-value=48 Score=22.19 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
.|....+..|..+++++......++..+..+......+...+++.-++++
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555556666666666666666666666666666666665555544
No 105
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.86 E-value=3.4 Score=31.91 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=34.2
Q ss_pred ccceeccccccccc-CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCcee
Q psy11858 29 SFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84 (267)
Q Consensus 29 ~~l~C~iC~~~~~~-~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~ 84 (267)
++-.|.+|...|.. .++.-.-..|.|.+|..|-. +. .......|-.|.+.-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~--~~---~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH--AH---PEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE--CC---SSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc--cc---CCCCcEeeHHHHHHH
Confidence 36899999999874 22333335799999999962 11 124567777777654
No 106
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.65 E-value=46 Score=23.61 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 167 MSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 167 ~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
....|....+.+...++.+++.+..+.....++...++..+.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455566777777777777777777777777777664
No 107
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.55 E-value=41 Score=23.51 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 167 MSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 167 ~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
....|....+.+...++.+++.+..+.....++...+...+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444556666777777777777777777777666554
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.19 E-value=27 Score=32.16 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=39.0
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 159 PFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 159 ~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
..+..+.++.+.|++.+..++.++......|..|+..+++...+|+++-.+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777777777777777788888888888888888776
No 109
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.48 E-value=3.3 Score=37.17 Aligned_cols=54 Identities=17% Similarity=0.394 Sum_probs=0.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhc-cCCCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ-TRETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~-~~~~~~~~CP~C~~~ 83 (267)
.-.|..|...|....|.-.--.||+.||..|......-. ......-.|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 467999999998666666667899999999986543221 011224456666543
No 110
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.42 E-value=21 Score=24.11 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=28.7
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
+...|++|...|. .. .=+....... .+...+.|+.|.+.+..
T Consensus 27 ~~h~C~~Cgk~F~----~~-----------~~L~~H~~~H-~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFA----SK-----------GAQERHLRLL-HAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEES----SH-----------HHHHHHHHTT-SCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcC----cH-----------HHHhhhhhhc-cCCCccCCCCCCCEeCC
Confidence 3688999999997 32 2334443322 23568999999999873
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.33 E-value=52 Score=20.83 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
.|+...++.-...+..+..++..+......+......+..++....+.
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666666655555655555555555444443
No 112
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.50 E-value=25 Score=21.53 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=27.8
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHh-ccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS-QTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~-~~~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...|. .. .=+...... ...+...+.|+.|...+.
T Consensus 9 k~~~C~~C~k~f~----~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 9 HTYRCKVCSRVYT----HI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp TEEECTTTCCEES----SH-----------HHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred cceECCCCcchhC----CH-----------HHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 3688999999997 32 223333332 212456899999999886
No 113
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.37 E-value=62 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHH
Q psy11858 172 LYKANECVSKNKVCPERKSNLRPSAHKADAYVR 204 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~ 204 (267)
...+..+...+..+...+..+......+...++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666666666666655555
No 114
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=44.88 E-value=72 Score=21.78 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=5.9
Q ss_pred HHHhHHHHHHHHHHHH
Q psy11858 188 RKSNLRPSAHKADAYV 203 (267)
Q Consensus 188 ~l~~l~~~~~~~~~~i 203 (267)
.|+.++...+.....|
T Consensus 59 ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 59 EIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 115
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.76 E-value=62 Score=23.64 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=29.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 159 PFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 159 ~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
++++|... +.++++.+...++.+++.+..+......+...+++...
T Consensus 85 ~~~eA~~~----l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 85 NFEDAMES----IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555444 44444467777777777777777777777777766543
No 116
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=44.68 E-value=70 Score=24.05 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 166 RMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 166 ~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
+..+.+.++++.+...++.+++.+..+....+.+...+++.....+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555577788888888888888888888888888777665
No 117
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.38 E-value=58 Score=21.57 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 163 AIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 163 a~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.+.+++..|..+.++ +...++.+..+++...+.+..|++...++
T Consensus 20 ti~eLq~~L~~K~eE----Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 20 SLRDLQYALQEKIEE----LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544433 44445556666666666666666666555
No 118
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.94 E-value=6.1 Score=28.02 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.3
Q ss_pred HHHHhhHHHHHHh
Q psy11858 55 TVCLHCLSRIAAS 67 (267)
Q Consensus 55 sfC~~Ci~~~~~~ 67 (267)
.||++|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 119
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.54 E-value=6.2 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHh
Q psy11858 55 TVCLHCLSRIAAS 67 (267)
Q Consensus 55 sfC~~Ci~~~~~~ 67 (267)
.||++|+..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 120
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.48 E-value=3.6 Score=31.07 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=32.9
Q ss_pred ccceeccccccccc-CCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 29 SFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 29 ~~l~C~iC~~~~~~-~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
+.-.|.+|...|.. ++..-.-..|.|.+|..|-..... +.......|-.|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~--~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN--NRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC--SSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCC--CCCccceechhhHHH
Confidence 46889999999953 223334457999999999542211 011345667666654
No 121
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.71 E-value=64 Score=20.56 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
.|+..++..-......+....+.+......+......+..++....+
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777666666666666666666666666666666665554443
No 122
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.07 E-value=41 Score=19.70 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=26.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .-+.........+...+.|+.|...+.
T Consensus 12 ~~~C~~C~k~f~----~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 12 PYICQSCGKGFS----RP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CEECSSSCCEES----SH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CeECCCCCcccC----CH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 688999999997 32 234444331123456799999998764
No 123
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=39.47 E-value=97 Score=25.95 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 160 FSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 160 l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
+..++.........+...+...+..++.++.++++..+++.++|...-..|
T Consensus 203 L~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~ 253 (268)
T 2yo3_A 203 LKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEI 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555666666677777777777777776666665555544
No 124
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=39.22 E-value=25 Score=22.00 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=28.2
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeec
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~ 86 (267)
..+.|++|...|. .. .-+....... .+...+.|+.|...+..
T Consensus 3 Kpy~C~~C~k~F~----~~-----------~~L~~H~~~H-t~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYR----DA-----------SGLSRHRRAH-LGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEES----SH-----------HHHHHHHHHH-HTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeC----CH-----------HHHHHHHHHh-CCCcCeECCCCCCCcCC
Confidence 3688999999997 32 2333333322 23568999999999873
No 125
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.94 E-value=48 Score=18.67 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=5.8
Q ss_pred HHHHHHhhhhhHHHHH
Q psy11858 175 ANECVSKNKVCPERKS 190 (267)
Q Consensus 175 ~~~~~~~~~~~~e~l~ 190 (267)
.+++..+...++..+.
T Consensus 10 VEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 126
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.16 E-value=40 Score=20.60 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=26.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceeecC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~~~ 87 (267)
.+.|++|...|. .... +. ....+...+.|+.|...+...
T Consensus 14 ~~~C~~C~k~F~----~~~~-----------l~----~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 14 SFKCPVCSSTFT----DLEA-----------NQ----LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp EEECSSSCCEEE----HHHH-----------HH----HEETTTTEEBCSSSCCBCEEC
T ss_pred CccCCCCCchhc----cHHH-----------hH----hhcCCCCCEECCCCCCccccC
Confidence 588999999887 2211 11 112335689999999988754
No 127
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.01 E-value=55 Score=18.18 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=14.0
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 183 KVCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
.+++++++.+.....++++++.+.++-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455555555555555555555443
No 128
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.18 E-value=83 Score=27.78 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=6.9
Q ss_pred ccccCC-CCcee
Q psy11858 74 TLRCPI-CREQI 84 (267)
Q Consensus 74 ~~~CP~-C~~~~ 84 (267)
.+.||. |+-.-
T Consensus 45 G~kCPsGCrLqg 56 (390)
T 1deq_A 45 NTKCPSGCRMKG 56 (390)
T ss_pred cCCCCccchHHH
Confidence 467887 65443
No 129
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=35.83 E-value=12 Score=22.59 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=22.0
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~ 83 (267)
...|.+|.-+|+...-+| ..|+.- -....||.|+..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~---------------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN---------------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT---------------CCGGGS---CTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC---------------cchhhC---CCCCcCcCCCCc
Confidence 478999998886321133 122211 234789999975
No 130
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.45 E-value=5.9 Score=27.19 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=21.5
Q ss_pred eeccccccccc-CCCCceecC-CCCHHHHhhHHHH
Q psy11858 32 TCGTCLCMYDG-GEHTPKLLP-CSHTVCLHCLSRI 64 (267)
Q Consensus 32 ~C~iC~~~~~~-~~r~P~~L~-C~HsfC~~Ci~~~ 64 (267)
-||-|...+.. ....++.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 39988876542 222335555 8999998887654
No 131
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.29 E-value=83 Score=19.72 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
.|+...++.-...+..+..+...+......+......+..++....
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 11 AAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666666555555555555555554443
No 132
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.52 E-value=61 Score=17.97 Aligned_cols=24 Identities=4% Similarity=-0.040 Sum_probs=10.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 184 VCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 184 ~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
++++.++++.....++++++.+.+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444444444444444444443
No 133
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.32 E-value=45 Score=21.07 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=26.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHH-hccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA-SQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~-~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .=+..... ........+.|+.|...+.
T Consensus 15 ~~~C~~C~k~f~----~~-----------~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 15 PYECYICHARFT----QS-----------GTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp SEECTTTCCEES----CH-----------HHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CeECCCcCchhC----CH-----------HHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 689999999997 32 22333332 2211225799999999886
No 134
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.17 E-value=1e+02 Score=20.58 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
+|+...++.-......+..+...++..-..|...++.+...+....+-+.
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555566666666666666666666666666666655543
No 135
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.82 E-value=30 Score=20.26 Aligned_cols=39 Identities=15% Similarity=0.426 Sum_probs=25.2
Q ss_pred ceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 31 l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.|++|...|. .+ .=+....... .+...+.|+.|...+.
T Consensus 2 ~~C~~C~~~f~----~~-----------~~l~~H~~~h-~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXK----KP-----------SMLKKHIRTH-TDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCS----SH-----------HHHHHHHHHT-SSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCC----CH-----------HHHHHHHHhc-CCCCCccCCCCCchhc
Confidence 57999998887 32 1233333222 2356799999999886
No 136
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.74 E-value=63 Score=17.97 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=13.2
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 183 KVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
.++++.++.+.....++.+++.+.++
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 137
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.26 E-value=1.2e+02 Score=20.83 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
+|+...++.-......+..+...++..-..|...++.+..++......+.
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555565555555566666666666666666666666666666555554
No 138
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=32.92 E-value=33 Score=20.10 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=24.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .-+....... .+...+.|+.|...+.
T Consensus 4 ~~~C~~C~~~f~----~~-----------~~l~~H~~~h-~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFR----SN-----------YYLNIHLRTH-TGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCS----CH-----------HHHHHHHHHH-HCCCCEECSSSSCEES
T ss_pred CccCCCCcchhC----Ch-----------HHHHHHHHHc-CCCCCcCCCCCcchhC
Confidence 578999999997 32 1222222211 1245799999999876
No 139
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=32.24 E-value=59 Score=18.06 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=10.9
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 184 VCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 184 ~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
+++++++++-....++.+++.+..
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 140
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.84 E-value=1.8e+02 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.4
Q ss_pred cccCCCCceeec
Q psy11858 75 LRCPICREQITI 86 (267)
Q Consensus 75 ~~CP~C~~~~~~ 86 (267)
..||.|+..+..
T Consensus 3 ~~CpiC~k~Y~~ 14 (183)
T 3lqh_A 3 NFCPLCDKCYDD 14 (183)
T ss_dssp CBCTTTCCBCTT
T ss_pred CcCCCCcCccCC
Confidence 359999998873
No 141
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=31.24 E-value=1.3e+02 Score=23.44 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=37.4
Q ss_pred CCceeeHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 154 EHTIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 154 ~H~~~~l~ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
.|.+..+. ...+.|+..++.+.+....+.+.+........+++.++...+-++.
T Consensus 88 ~~E~~~l~----~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~ 141 (170)
T 3l4q_C 88 EKEMQRIL----LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM 141 (170)
T ss_dssp SSSTTTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45544443 3445555666677777788888888777777788888888877765
No 142
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.86 E-value=62 Score=16.95 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhHHHHH
Q psy11858 172 LYKANECVSKNKVCPERKS 190 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~e~l~ 190 (267)
.+++..+..+++.+++.++
T Consensus 7 ekkcaalesklqalekkle 25 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 143
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.80 E-value=18 Score=24.91 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=28.6
Q ss_pred cceecccccccccCCCCceecC---CCCHHHHhhHHHHHHhccC----------CCCccccCCCCce
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLP---CSHTVCLHCLSRIAASQTR----------ETGTLRCPICREQ 83 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~---C~HsfC~~Ci~~~~~~~~~----------~~~~~~CP~C~~~ 83 (267)
.-.|+||...- .-.++| |+..|=..|+.+.-..++. ......||.|.--
T Consensus 15 D~~C~VC~~~t-----~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 15 DEMCDVCEVWT-----AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp SCCCTTTCCCC-----SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CcccCcccccc-----ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 46788885433 233444 5666667777765332221 3457899999543
No 144
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.68 E-value=44 Score=18.89 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=23.3
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCc
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~ 82 (267)
.+.|++|...|. .. .=+....... .+...+.|+.|.+
T Consensus 12 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H-~~~k~~~C~~C~k 48 (48)
T 2epr_A 12 QVACEICGKIFR----DV-----------YHLNRHKLSH-SGEKPYSSGPSSG 48 (48)
T ss_dssp SEEETTTTEEES----SH-----------HHHHHHGGGS-CSCCCCCSCCCCC
T ss_pred CeeCCCCCcccC----CH-----------HHHHHHHHhc-CCCCCccCCCCCC
Confidence 689999999997 32 1233333222 2346789999864
No 145
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=30.21 E-value=8.2 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=12.9
Q ss_pred cceecccccccccCCCCceec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLL 50 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L 50 (267)
.+.|++|..... ++.++
T Consensus 3 k~~CpvCk~q~P----d~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAP----DMDTL 19 (28)
T ss_dssp CEECTTSSCEES----SHHHH
T ss_pred cccCccccccCc----ChHHH
Confidence 478999998887 66543
No 146
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.12 E-value=1.3e+02 Score=27.18 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 162 IAIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 162 ea~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
.++.++.+.|+.++..+..++...-..|..|+..+++...+|+++-.+|
T Consensus 107 n~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 107 ENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666555666677888888888888887776
No 147
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.10 E-value=40 Score=20.86 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=26.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .=+....... .+...+.|+.|...+.
T Consensus 9 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H-~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 9 PEKCSECSYSCS----SK-----------AALRIHERIH-CTDRPFKCNYCSFDTK 48 (70)
T ss_dssp SEECSSSSCEES----SH-----------HHHHHHHGGG-CCSCSEECSSSSCEES
T ss_pred CeECCCCCcccC----CH-----------HHHHHHHHHc-CCCCCEeCCCCCCccC
Confidence 689999999997 32 1233333322 2346799999999886
No 148
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.05 E-value=54 Score=19.35 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=25.8
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .=+....... .+...+.|+.|...+.
T Consensus 2 ~~~C~~C~~~f~----~~-----------~~l~~H~~~h-~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFA----RQ-----------EHLKRHYRSH-TNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBS----CH-----------HHHHHHHHTT-TSSCSEECTTTCCEES
T ss_pred cCcCCCCccccC----CH-----------HHHHHHHHHh-CCCCCccCCCCCCccC
Confidence 468999998887 32 1233333221 2345799999999886
No 149
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.02 E-value=51 Score=20.51 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=27.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...|. .. .=+....... .+...+.|+.|...+.
T Consensus 13 k~~~C~~C~k~f~----~~-----------~~L~~H~~~h-~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFS----RS-----------SILVQHQRVH-TGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEES----SH-----------HHHHHHHHGG-GCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccC----CH-----------HHHHHHHHhc-CCCCCeECCCCCcccC
Confidence 3689999999997 32 1233333222 2346799999999886
No 150
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.75 E-value=64 Score=20.09 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=27.1
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...|. .. .=+....... .+...+.|+.|...+.
T Consensus 16 ~~~~C~~C~k~f~----~~-----------~~l~~H~~~H-~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 16 KPYKCDRCQASFR----YK-----------GNLASHKTVH-TGEKPYRCNICGAQFN 56 (74)
T ss_dssp CSBCCTTSSCCBS----CH-----------HHHHHHHHHH-CCCCSEECTTTCCEES
T ss_pred CCeECCCCCceeC----CH-----------HHHHHHHHHc-CCCCCEECCCCCchhC
Confidence 3689999999997 32 1233333222 2346799999999886
No 151
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.41 E-value=66 Score=17.64 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=22.6
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCC
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR 81 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~ 81 (267)
.+.|++|...|. .. .=+....... .+...+.||.|.
T Consensus 10 ~~~C~~C~k~f~----~~-----------~~l~~H~~~H-~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFK----RK-----------DRMSYHVRSH-DGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECS----CH-----------HHHHHHHHHH-SCCCCCCCCCCC
T ss_pred CCcCCCCCcccC----CH-----------HHHHHHHHHc-cCCCCCCCcCCC
Confidence 688999999987 32 2233333322 235678999884
No 152
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.39 E-value=98 Score=18.12 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=6.0
Q ss_pred hhhHHHHHhHHHHHHH
Q psy11858 183 KVCPERKSNLRPSAHK 198 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~ 198 (267)
...++.+..++....+
T Consensus 19 ~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 19 TMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 153
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.28 E-value=84 Score=17.31 Aligned_cols=23 Identities=4% Similarity=0.091 Sum_probs=9.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 185 CPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 185 ~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
+++.++++.....++++++.+.+
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444444444443
No 154
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.71 E-value=1.3e+02 Score=19.16 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=12.1
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 183 KVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
..++..+..+......+...+....+.+
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 155
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.82 E-value=1.3e+02 Score=25.21 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 168 SEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 168 ~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
-..|...+.....++..+++.++++.+....++..|.+.+.-|+
T Consensus 218 ~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 218 MGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566666777777788888888877777777777777776666
No 156
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.47 E-value=1e+02 Score=26.61 Aligned_cols=31 Identities=3% Similarity=-0.156 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHhHHHHHHHHHHHHHHhhhcc
Q psy11858 180 SKNKVCPERKSNLRPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 180 ~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v 210 (267)
..+..++..+..++..+.++..+|......+
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 157
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.36 E-value=60 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=10.7
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoe_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SSEETTTTEECS
T ss_pred CeECCCcChhhC
Confidence 589999999997
No 158
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.32 E-value=1.6e+02 Score=19.98 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhcc
Q psy11858 193 RPSAHKADAYVRRRGAHT 210 (267)
Q Consensus 193 ~~~~~~~~~~i~~~~~~v 210 (267)
....+.++..|.+....|
T Consensus 57 ~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 159
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.18 E-value=17 Score=26.36 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=38.8
Q ss_pred CCccccccccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 21 INYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 21 ~~~~~~~~~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.....+-.+-+.|..|...+.. .+....=|..||..|..+... ..|..|+..+.
T Consensus 21 a~~~~~H~~CF~C~~C~~~L~~---~~f~~~~g~~yC~~cy~~~~~--------~~C~~C~~~I~ 74 (126)
T 2xqn_T 21 AENQNWHLKHFCCFDCDSILAG---EIYVMVNDKPVCKPCYVKNHA--------VVCQGCHNAID 74 (126)
T ss_dssp ETTEEECGGGSBCTTTCCBCTT---SEEEEETTEEEEHHHHHHHSC--------CBCTTTCSBCC
T ss_pred eCCCCccCCCCCcCCCCCCCCc---CEEEeECCEEechHHhCcCcC--------ccCcccCCcCC
Confidence 3344555667999999998872 344455577889999865432 57999999876
No 160
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.13 E-value=1.2e+02 Score=18.56 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
+|...+..+..++..+...+..+.........+..+..+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555555555554444444443
No 161
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.91 E-value=40 Score=24.63 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 170 ILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 170 ~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
++..++++...++-.++..+..+++....+...+++.-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~a 55 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLA 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 162
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.84 E-value=14 Score=18.69 Aligned_cols=9 Identities=56% Similarity=1.364 Sum_probs=7.1
Q ss_pred ccccccccc
Q psy11858 127 LFCETCDTV 135 (267)
Q Consensus 127 ~fC~~C~~~ 135 (267)
+||++|..+
T Consensus 6 ffcetcskp 14 (26)
T 1loi_A 6 FFCETCSKP 14 (26)
T ss_dssp HHHHTSSCT
T ss_pred HHHHhcCCc
Confidence 788888765
No 163
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=59 Score=17.92 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2ytn_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeECCCCCCeeC
Confidence 588999999997
No 164
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.31 E-value=1.4e+02 Score=27.44 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.8
Q ss_pred hHHHHH
Q psy11858 60 CLSRIA 65 (267)
Q Consensus 60 Ci~~~~ 65 (267)
|+..++
T Consensus 361 ~~~~~~ 366 (597)
T 3oja_B 361 SLRALF 366 (597)
T ss_dssp HHHHHT
T ss_pred hHHHHH
Confidence 444444
No 165
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=24.25 E-value=1.6e+02 Score=19.48 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHH
Q psy11858 166 RMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRR 205 (267)
Q Consensus 166 ~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~ 205 (267)
...+-|.+.-..++.++..+.+++..++...+-++.++..
T Consensus 31 ~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 31 KIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455556678888888888888888888777777654
No 166
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.16 E-value=1.2e+02 Score=18.18 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHH
Q psy11858 163 AIKRMSEILLYKANECVSKNKVCPERKSNLR 193 (267)
Q Consensus 163 a~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~ 193 (267)
+.-.++......++.+.+++..+-.+++.++
T Consensus 13 slv~FQ~~v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 13 SIVKFQTKVEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544
No 167
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.73 E-value=86 Score=19.85 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=26.5
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCC---CCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRE---TGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~---~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .-+.......... ...+.|+.|...+.
T Consensus 15 ~~~C~~C~~~f~----~~-----------~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~ 58 (86)
T 1x6h_A 15 PYACSHCDKTFR----QK-----------QLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58 (86)
T ss_dssp CEECSSSSCEES----SH-----------HHHHHHHHHTTCSSCCCCCEECSSSCCEES
T ss_pred CCcCCCCCCccC----CH-----------HHHHHHHHHhcCCcCCCcceECCCCCChhC
Confidence 689999999997 32 2333443322111 15699999999886
No 168
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=57 Score=18.06 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em5_A 12 SHQCHECGRGFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCCccC
Confidence 588999999997
No 169
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.36 E-value=1.7e+02 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=5.2
Q ss_pred HhhhhhHHHHHhHH
Q psy11858 180 SKNKVCPERKSNLR 193 (267)
Q Consensus 180 ~~~~~~~e~l~~l~ 193 (267)
..++.++-+...+.
T Consensus 14 ~sld~LQTrfARLL 27 (74)
T 3swf_A 14 SSVDLLQTRFARIL 27 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 170
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.27 E-value=1.9e+02 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=6.8
Q ss_pred HHHHhhhhhHHHHHhHHH
Q psy11858 177 ECVSKNKVCPERKSNLRP 194 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~ 194 (267)
.+.+++..++..+..+..
T Consensus 92 ~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 171
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.21 E-value=64 Score=17.73 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eop_A 12 PHECRECGKSFS 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeeCCCCCchhC
Confidence 588999999997
No 172
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.79 E-value=1.3e+02 Score=17.97 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q psy11858 174 KANECVSKNKVCPERKSNLRPSAHKADAYVRRRG 207 (267)
Q Consensus 174 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~ 207 (267)
+++.+...++.++-+...+....+....+++.+.
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554444444444443
No 173
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.66 E-value=45 Score=22.14 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=26.2
Q ss_pred cceecccccccccCCCCceecCCC------CHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCS------HTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~------HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.| +|...+++ .-.++.|. |..|..-...-.. ....+.||.|.....
T Consensus 12 ~~~C-~C~~~~d~---~~~MIqCd~C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNV---NHFMIECGLCQDWFHGSCVGIEEENAV----DIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCS---SSCEEEBTTTCCEEEHHHHTCCHHHHT----TCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCC---CCceEEcCCCCCcEEeeecCccccccc----CCCeEECCCcccccC
Confidence 5566 77776641 22344443 5555443322221 136799999997654
No 174
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.64 E-value=65 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=10.7
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ysp_A 12 PYKCEKCGKGYN 23 (46)
T ss_dssp SEEETTTTEEES
T ss_pred CeECCCCCCccC
Confidence 689999999997
No 175
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.54 E-value=66 Score=17.70 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=10.7
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en1_A 12 PFKCEECGKRFT 23 (46)
T ss_dssp SEEETTTTEEES
T ss_pred CeeCCCCCcccC
Confidence 589999999997
No 176
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.49 E-value=57 Score=20.56 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=26.0
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhcc--CCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQT--RETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~--~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...|. ... =+........ .....+.|+.|...+.
T Consensus 6 k~~~C~~C~k~f~----~~~-----------~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 6 SGLQCEICGFTCR----QKA-----------SLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCEECSSSCCEES----SHH-----------HHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred cCeECCCCCCeeC----CHH-----------HHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 3688999999997 321 1222221110 0135799999999886
No 177
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.33 E-value=70 Score=17.57 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2epz_A 12 PFDCIDCGKAFS 23 (46)
T ss_dssp SBCCTTTCCCBS
T ss_pred CeECCCCCceeC
Confidence 688999999997
No 178
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.23 E-value=8.9 Score=25.52 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=27.9
Q ss_pred ccceecccccccccCCCCceecCCC------CHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCS------HTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~------HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
+.+.| +|...+. .-.++.|. |..|..-.......-......+.||.|.....
T Consensus 15 ~~~~C-~C~~~~~----~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHN----NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCC----SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccC----CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 35778 8988776 33456554 55444332222110000135689999987654
No 179
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.11 E-value=67 Score=17.64 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytr_A 12 PYKCNECGKAFS 23 (46)
T ss_dssp TTCCTTTCCCCS
T ss_pred CcCCCCCCCccC
Confidence 588999999997
No 180
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.04 E-value=1.6e+02 Score=18.58 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHh
Q psy11858 163 AIKRMSEILLYKANECVSKNKVCPERKSNLRPSAHKADAYVRRR 206 (267)
Q Consensus 163 a~~~~~e~l~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~ 206 (267)
|+...+..=...+..+......+......+......+...+...
T Consensus 13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555554444544444444444433
No 181
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.75 E-value=1.1e+02 Score=16.65 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eq4_A 12 LYNCKECGKSFS 23 (46)
T ss_dssp CCCBTTTTBCCS
T ss_pred CeECCCCCCccC
Confidence 588999999997
No 182
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=91 Score=17.07 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=10.6
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~F~ 23 (47)
T 2epx_A 12 PYECIECGKAFI 23 (47)
T ss_dssp SBCCSSSCCCBS
T ss_pred CEECCccCchhC
Confidence 588999999997
No 183
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.42 E-value=1.2e+02 Score=16.88 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=13.0
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhh
Q psy11858 183 KVCPERKSNLRPSAHKADAYVRRRGA 208 (267)
Q Consensus 183 ~~~~e~l~~l~~~~~~~~~~i~~~~~ 208 (267)
.++++.++++-....++++++.+.++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444455555555555555555444
No 184
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.40 E-value=83 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=26.4
Q ss_pred ccceeccccccc-ccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMY-DGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~-~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...| . .. .-+....... +...+.|+.|.+.+.
T Consensus 33 ~~~~C~~C~k~F~~----~~-----------~~L~~H~~~h--~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 33 GSVSCPTCQAVGRK----TI-----------EGLKKHMENC--KQEMFTCHHCGKQLR 73 (96)
T ss_dssp SCEECTTTCSCEES----SH-----------HHHHHHHHHH--CCCCCCCSSSCCCCS
T ss_pred CCcCCCCCCCCccc----CH-----------HHHHHHHHHH--CCCCeECCCCCCeeC
Confidence 357899999988 6 22 2233333322 356799999999876
No 185
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.31 E-value=89 Score=19.56 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=26.9
Q ss_pred ccceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 29 ~~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
..+.|++|...|. .. .=+....... .+...+.|+.|...+.
T Consensus 17 ~~~~C~~C~~~f~----~~-----------~~l~~H~~~h-~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFS----HS-----------SDLSKHRRTH-TGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCS----CH-----------HHHHHHHTTT-CCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccC----CH-----------HHHHHHHHHc-CCCcCeeCCCCCCccC
Confidence 4689999999997 32 1233333221 2345799999999886
No 186
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.18 E-value=1.2e+02 Score=16.75 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy11858 189 KSNLRPSAHKADAYVRR 205 (267)
Q Consensus 189 l~~l~~~~~~~~~~i~~ 205 (267)
++++-....++.+++.+
T Consensus 9 VEell~~~~~le~EV~R 25 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 33333333344444433
No 187
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.68 E-value=29 Score=23.16 Aligned_cols=34 Identities=24% Similarity=0.626 Sum_probs=24.5
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCcee
Q psy11858 124 QELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTII 158 (267)
Q Consensus 124 ~~~~fC~~C~~~iC~~C~~~~~H~~~~~~~~H~~~ 158 (267)
.....|.+|...+|..|.... |........|.++
T Consensus 43 ~A~ksCl~C~~s~C~~hl~~~-H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 43 DAVKTCVTCEVSYCDECLKAT-HPNKKPFTGHRLI 76 (78)
T ss_dssp BCCEEETTTTEEECHHHHHHH-SCCCSSSCSCCCS
T ss_pred CCeeEccCccchhhhhhhHhh-cCCCCCCCCCccc
Confidence 344899999999999998742 6544445577654
No 188
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.49 E-value=1.1e+02 Score=16.72 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=10.5
Q ss_pred cceecccccccc
Q psy11858 30 FLTCGTCLCMYD 41 (267)
Q Consensus 30 ~l~C~iC~~~~~ 41 (267)
.+.|++|...|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytd_A 12 PYKCSECGKAFH 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCCeeC
Confidence 588999999987
No 189
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.41 E-value=1.8e+02 Score=25.64 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=8.1
Q ss_pred Ccccccccccc-ccccccc
Q psy11858 123 SQELLFCETCD-TVFCLQC 140 (267)
Q Consensus 123 ~~~~~fC~~C~-~~iC~~C 140 (267)
+...-+|.+.. -..|...
T Consensus 33 ~~d~~~C~DeDwG~kCPsG 51 (390)
T 1deq_A 33 ETGWPFCSDEDWNTKCPSG 51 (390)
T ss_pred CCCCCCCchhhccCCCCcc
Confidence 34445665432 2345443
No 190
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.38 E-value=1.2e+02 Score=16.70 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=13.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhhhc
Q psy11858 184 VCPERKSNLRPSAHKADAYVRRRGAH 209 (267)
Q Consensus 184 ~~~e~l~~l~~~~~~~~~~i~~~~~~ 209 (267)
+++++++++.....++++++.+.+.-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444455555555555555554443
No 191
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=20.35 E-value=74 Score=20.59 Aligned_cols=40 Identities=15% Similarity=0.463 Sum_probs=25.9
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccCCCCceee
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP~C~~~~~ 85 (267)
.+.|++|...|. .. .-+....... .+...+.|+.|...+.
T Consensus 3 ~~~C~~C~k~f~----~~-----------~~L~~H~~~H-~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 3 PFQCRICMRNFS----RS-----------DHLTTHIRTH-TGEKPFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEES----CH-----------HHHHHHHHHH-HCCCCEECTTTCCEES
T ss_pred CCcCCCCCCccC----CH-----------HHHHHHHHHc-CCCCCccCCCCCCccC
Confidence 578999999997 32 1222322221 1246799999999886
No 192
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.32 E-value=2.8e+02 Score=20.89 Aligned_cols=35 Identities=11% Similarity=-0.182 Sum_probs=21.1
Q ss_pred HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q psy11858 177 ECVSKNKVCPERKSNLRPSAHKADAYVRRRGAHTQ 211 (267)
Q Consensus 177 ~~~~~~~~~~e~l~~l~~~~~~~~~~i~~~~~~v~ 211 (267)
.+.+..+.+.+.+.+.....+.+...++.....+.
T Consensus 96 ~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 96 MLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555566666677777766665
No 193
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=1.3e+02 Score=18.14 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=25.4
Q ss_pred cceecccccccccCCCCceecCCCCHHHHhhHHHHHHhccCCCCccccC-CCCceeec
Q psy11858 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCP-ICREQITI 86 (267)
Q Consensus 30 ~l~C~iC~~~~~~~~r~P~~L~C~HsfC~~Ci~~~~~~~~~~~~~~~CP-~C~~~~~~ 86 (267)
.+.|+.|...|. ..=+...... .+...+.|+ .|...+..
T Consensus 10 ~~~C~~C~k~f~----------------~~~L~~H~~~--~~~~p~~C~~~C~k~f~~ 49 (66)
T 2eod_A 10 TQPCTYCTKEFV----------------FDTIQSHQYQ--CPRLPVACPNQCGVGTVA 49 (66)
T ss_dssp EEECSSSCCEEE----------------HHHHHHHHHH--CSSSEEECTTCCSCCEEE
T ss_pred CeeccccCCccC----------------HHHHHHHHHH--cCCcCccCCcccCccccc
Confidence 567777776664 2234444433 345789999 99998764
Done!