RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11858
(267 letters)
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 83.2 bits (206), Expect = 8e-21
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
D L C C+ + + PKLL C HT+C CL ++ AS +RCP C +
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN---GVRCPFCSKIT 66
Query: 85 TIPRGGVAALPPSFLVNQLLD 105
I + L + V +
Sbjct: 67 RIT--SLTQLTDNLTVLKSGP 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 60.5 bits (147), Expect = 9e-13
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E+F FL C C PKLLPC HT+C CL E ++CPIC+
Sbjct: 2 EEFQ--FLRCQQCQAEAK----CPKLLPCLHTLCSGCL---------EASGMQCPICQAP 46
Query: 84 ITIPRGGVA 92
+ A
Sbjct: 47 WPLGADTPA 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 50.9 bits (121), Expect = 1e-07
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
Y + +F C C K+ PC H +C CL+ S+ + CP CR
Sbjct: 325 YCEMGSTFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQG-----CPFCRC 375
Query: 83 QIT 85
+I
Sbjct: 376 EIK 378
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 47.6 bits (113), Expect = 2e-07
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
CG C+ + P LPC+HT+C C T E +L CP CR + +
Sbjct: 16 CQCGICMEIL----VEPVTLPCNHTLCKPCFQS-----TVEKASLCCPFCRRR--VSSWT 64
Query: 91 VAALPPSFLVNQLL 104
+ LVN L
Sbjct: 65 RYHTRRNSLVNVEL 78
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 46.6 bits (110), Expect = 1e-06
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E+ L C C + L C+H+ C +C++ + CPICR+ I
Sbjct: 62 ENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKI------ECPICRKDIKSK 111
Query: 88 RGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLF 128
+L +N++++ +S + + + LF
Sbjct: 112 T---YSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF 149
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 45.0 bits (106), Expect = 2e-06
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E C C + P C H VC CL R +Q CP CR +
Sbjct: 50 EETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGR- 99
Query: 88 RGGVAALPPSFLVNQLLDLM 107
+ VNQ L +
Sbjct: 100 -------SYAMQVNQPLQTV 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 43.5 bits (103), Expect = 3e-06
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
+TC CL + P C+H+ C C++ S G CP+CR
Sbjct: 20 VTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 42.3 bits (100), Expect = 9e-06
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
+TC CL + P L C H+ C CL+ + G CP+CR
Sbjct: 20 VTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 41.6 bits (97), Expect = 1e-05
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
D E + C C+ + + C + +C C RI R CP CR+
Sbjct: 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKP 59
Query: 84 IT 85
Sbjct: 60 YP 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 91/233 (39%)
Query: 84 ITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHN-SQELLFCETCDTVFCLQCTG 142
++IP + P ++ QL H + + L G
Sbjct: 232 LSIP----ISCPLIGVI-QLA--------HYVVTAKLLGFTPGELRSYLK---------G 269
Query: 143 GSNHS-----------STSGDSEHTIIPFSIAIKRMSEILLYKANECVSKNKVCPERKSN 191
+ HS + S +S F +++++ +L + C + P ++
Sbjct: 270 ATGHSQGLVTAVAIAETDSWES------FFVSVRKAITVLFFIGVRC---YEAYPN--TS 318
Query: 192 LRPSAHKADAYVRRRGAHTQTP-PLFS-HGLSP-----------LSLPDSSH---ALLIT 235
L PS + D+ G P P+ S L+ LP +L+
Sbjct: 319 LPPSILE-DSLENNEG----VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 236 RRAYV---------------RRRGA----------HTQTPPLFSHGLSPLSLP 263
+ V R+ A ++ FS+ P++ P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 39.4 bits (92), Expect = 1e-04
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
+ L CG C + + ++P CSH C C+ + + +T +CP C +T
Sbjct: 20 DDLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSYKT------QCPTCCVTVTE 69
Query: 87 PRGGVAALPPSFLVNQLLDLMSRQRRHII 115
P L + ++++L+ ++ R H++
Sbjct: 70 PD-----LKNNRILDELVKSLNFARNHLL 93
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 39.4 bits (91), Expect = 1e-04
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
E I E + G +L CSH L CL + + ++ G+L+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD-GSLQ 84
Query: 77 CPICREQITIPRG 89
CP C+ G
Sbjct: 85 CPSCKTIYGEKTG 97
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
E C C + + P C H VC CL R +Q CP CR +
Sbjct: 76 EQSFMCVCCQELV----YQPVTTECFHNVCKDCLQRSFKAQVFS-----CPACRHDLGQN 126
Query: 88 R 88
Sbjct: 127 Y 127
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 38.4 bits (90), Expect = 2e-04
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-AASQTRETGTLRCPICREQITIP 87
+TC CL + P L C H++C C++ + T G CP+C +
Sbjct: 13 VTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+ C CL + P + C H CL C+++I + G +CP+C+ +
Sbjct: 21 VICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVR 68
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 36.7 bits (85), Expect = 6e-04
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+ C CL P LPC H C C+ + RC +CR++I
Sbjct: 13 LTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWLGK------RCALCRQEIP 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.8 bits (85), Expect = 6e-04
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
C C + C+H+ C+S RCP+C++ + R G
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------RCPLCQQDWVVQRIG 80
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.43.1.1 PDB: 2dq5_A
Length = 84
Score = 36.7 bits (85), Expect = 7e-04
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 116 PKCSTHNSQEL-LFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRMSEIL 171
C H ++++ ++C + D + C C H +H + + +++ + L
Sbjct: 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEKLKQTL 69
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 37.5 bits (87), Expect = 8e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
+ ++ ES C CL PC H C C+ + +CP+
Sbjct: 8 DVEFDPPLESKYECPICLMAL----REAVQTPCGHRFCKACIIKS-----IRDAGHKCPV 58
Query: 80 CREQITIPRGGVAALPPSFLVNQLLDLMSR 109
E + + P +F ++L LM +
Sbjct: 59 DNEILLENQ----LFPDNFAKREILSLMVK 84
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 35.9 bits (83), Expect = 8e-04
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
E C C + +PK C H C C++ + + + +C C+E I
Sbjct: 13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAAL-----LSSSSPKCTACQESIV 61
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63,
muscle-specific ring finger protein 1, MURF1, ring
finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Length = 64
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 116 PKCSTHNSQEL-LFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIPFSIAIKRM 167
P C H +++ ++C TC+ C C H + P +
Sbjct: 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVFQGQ 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 36.8 bits (85), Expect = 0.001
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 31 LTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C C + P L C H C +C+S + CP+C I
Sbjct: 23 LRCSRCTNIL----REPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQD- 69
Query: 90 GVAALPPSFLVNQLLDLMSRQRRHI----IPKCSTHNSQELLFCET 131
L + ++ ++ L S+ R + + ++ LF +
Sbjct: 70 ----LKINRQLDSMIQLCSKLRNLLHDNELSDLKEDKPRKSLFNDA 111
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain,
structural genomics, NPPSFA; 1.80A {Homo sapiens}
Length = 50
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 118 CSTHNSQEL-LFCETCDTVFCLQCT 141
C+ H + L LFCE+CDT+ C C
Sbjct: 9 CNVHKHEPLVLFCESCDTLTCRDCQ 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 34.7 bits (80), Expect = 0.002
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
C C+ +LPC+H+ C C+ + + CPICR Q+T
Sbjct: 13 TDEEECCICMDGR-----ADLILPCAHSFCQKCIDKWSDRHRN-------CPICRLQMT 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 35.2 bits (81), Expect = 0.003
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETG--TLRCPI--CRE 82
+ C CL Y E + C C CL + +E + CP C +
Sbjct: 2 SSGSSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60
Query: 83 QITIPRGGVAALPPSFLVNQLLDLMSRQ 110
Q + + + + ++ + L +
Sbjct: 61 QGHLQENEIECMVAAEIMQRYKKLQFER 88
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 37.5 bits (86), Expect = 0.003
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCL-----SRIAASQTRETGTLRC 77
+ L C C G P + C CL + + E +C
Sbjct: 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQC 364
Query: 78 PICREQITIP 87
P C+ +++
Sbjct: 365 PFCKAKLSTS 374
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 35.2 bits (81), Expect = 0.004
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
T I + N L C C + ++ C H+ C C+ R +
Sbjct: 3 RTTRIKITELNPH-LMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSK------Y 52
Query: 77 CPICREQITIPR 88
CPIC Q+ R
Sbjct: 53 CPICDVQVHKTR 64
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger
protein 88, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 59
Score = 34.0 bits (78), Expect = 0.004
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 116 PKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIP 159
C+ H + LLFC+ V C C H H P
Sbjct: 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRG------HHTFP 52
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 33.5 bits (77), Expect = 0.006
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+ C CL + P + C H CL C+++I + G +CP+C
Sbjct: 21 VICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 35.8 bits (82), Expect = 0.006
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 20/124 (16%)
Query: 21 INYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+ ++ ES C CL PC H C C+ + +CP+
Sbjct: 9 VEFDPPLESKYECPICLMAL----REAVQTPCGHRFCKACIIKS-----IRDAGHKCPVD 59
Query: 81 REQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELL--FCETCD--TVF 136
E + + P +F ++L LM + C L C+ +
Sbjct: 60 NEILLENQ----LFPDNFAKREILSLM---VKCPNEGCLHKMELRHLEDHQAHCEFALMD 112
Query: 137 CLQC 140
C QC
Sbjct: 113 CPQC 116
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 35.7 bits (82), Expect = 0.007
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 23/133 (17%)
Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTL 75
+ ++ + L C CL M C H C C+ +G
Sbjct: 42 LEIVVSPRSLHSE-LMCPICLDML----KNTMTTKECLHRFCADCIIT-----ALRSGNK 91
Query: 76 RCPICREQITIPRGGVAALPPSFLVNQLLDLM--------SRQRRHIIPKCSTHNSQELL 127
CP CR+++ R +L P + L+ + + Q R + +N Q L
Sbjct: 92 ECPTCRKKLVSKR----SLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALS 147
Query: 128 FCETCDTVFCLQC 140
Sbjct: 148 HSIEEGLKIQAMN 160
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 33.6 bits (77), Expect = 0.007
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 29 SFLTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQI 84
+ ++C C+ Y C H C CL + + T CP CR++I
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRKKI 54
Query: 85 T 85
Sbjct: 55 N 55
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite
motif protein 41, TRIM41, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 57
Score = 33.3 bits (76), Expect = 0.007
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 116 PKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIP 159
C H LFCE + C+ C +H H+++P
Sbjct: 19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQ------HSVVP 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 35.1 bits (80), Expect = 0.007
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 31 LTCGTCLCMY---DGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
++C C+ Y C H C CL + CP CR++I
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN------TCPTCRKKINHK 61
Query: 88 RGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLFCETC------DTVFCLQC 140
R + + + + + +FC C + C C
Sbjct: 62 RYHPIYIGSGTVSCPIC-MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 119
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 33.5 bits (77), Expect = 0.008
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C CL + LPC H C C++R + T CP+C+ +
Sbjct: 7 RCPICLEDP---SNYSMALPCLHAFCYVCITR--WIRQNPT----CPLCKVPVE 51
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one
sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP:
g.43.1.1 PDB: 2dif_A
Length = 53
Score = 33.2 bits (76), Expect = 0.008
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 116 PKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIP 159
C H+ LFC CL C H + HT++P
Sbjct: 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRA------HTVVP 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 34.3 bits (79), Expect = 0.009
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
L C CL + P C H C C+ + ++ G +CP+C+ IT
Sbjct: 22 LECPICLELIK----EPVSTKCDHIFCKFCMLK---LLNQKKGPSQCPLCKNDIT 69
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 33.2 bits (76), Expect = 0.010
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 31 LTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR 88
L C C + ++P C ++ C C+ E+ CP C + P
Sbjct: 16 LLCLICKDIMT----DAVVIPCCGNSYCDECIRTAL----LESDEHTCPTCHQNDVSPD 66
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 33.3 bits (76), Expect = 0.011
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 27 NESFLTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICRE 82
++C C+ Y C H C CL + + T CP CR+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRK 59
Query: 83 QIT 85
+I
Sbjct: 60 KIN 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 33.3 bits (76), Expect = 0.012
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
+ E C C + P + C H C C + RC IC +
Sbjct: 9 SEEEEIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFRATP------RCYICDQP 58
Query: 84 I 84
Sbjct: 59 T 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 33.7 bits (77), Expect = 0.013
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 21/103 (20%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
E E F C C+ +L P CS C C+ R Q + CP CR
Sbjct: 17 ESIAEVF-RCFICMEKL----RDARLCPHCSKLCCFSCIRRWLTEQRAQ-----CPHCRA 66
Query: 83 QITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQE 125
+ + L ++ + + CS +E
Sbjct: 67 PLQLRE-----LVNCRWAEEVTQQLDTLQ-----LCSLTKHEE 99
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 32.6 bits (74), Expect = 0.018
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 31 LTCGTCLCMYD---GGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
++C C+ Y C H C CL + + T CP CR++I
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-------CPTCRKKIN 67
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 34.7 bits (79), Expect = 0.020
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 11 TNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR 70
++E E + ++ C C + G+ C + L C+++ S
Sbjct: 161 HGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCET---CGIRMHLPCVAKYFQSNAE 217
Query: 71 ETGTLRCPICREQIT 85
CP C +
Sbjct: 218 PR----CPHCNDYWP 228
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 31.9 bits (73), Expect = 0.021
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
C CL +LPC H + C + RCP+C +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY------RCPLCSGPSS 54
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 31.9 bits (73), Expect = 0.023
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC 80
+C CL P ++ C H C C++R CP+C
Sbjct: 16 ASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDL---ERDFPCPVC 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 32.0 bits (73), Expect = 0.025
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 20 SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
S N + + C C + C HT C C+ R RCP
Sbjct: 6 SGNLSELTPY-ILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSN------RCPK 55
Query: 80 CREQIT 85
C +
Sbjct: 56 CNIVVH 61
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 31.8 bits (72), Expect = 0.029
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
E + ++ C C + C + L C+++ S CP C +
Sbjct: 9 ETYPDAVKICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR----CPHCNDY 61
Query: 84 I 84
Sbjct: 62 W 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 32.9 bits (74), Expect = 0.030
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 8 TLSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAA 66
L +V+ +I + + C E T C+H HC+SR +
Sbjct: 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88
Query: 67 SQTRETGTLRCPICREQITIPRGG 90
Q CP+ + + G
Sbjct: 89 RQV-------CPLDNREWEFQKYG 105
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 32.6 bits (74), Expect = 0.044
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 9 LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
LST V+ F +S +C C + P C H C C+ R
Sbjct: 7 LSTKLLAVDFP----AHFVKSI-SCQICEHIL----ADPVETSCKHLFCRICILRCLKVM 57
Query: 69 TRETGTLRCPICREQIT 85
CP CR
Sbjct: 58 GS-----YCPSCRYPCF 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 31.3 bits (71), Expect = 0.045
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTV-CLHCLSRIAASQTRETGTLRCPICRE 82
ED C LC + H V C HC R+ + CPIC++
Sbjct: 1 EDCQNLLKPC--SLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS------CPICKK 52
Query: 83 QIT 85
+I
Sbjct: 53 EIQ 55
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 31.3 bits (71), Expect = 0.050
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
C CL + + + PC H CL + + + CP+C +
Sbjct: 13 NLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVRKV-------CPLCNMPVL 63
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 31.3 bits (71), Expect = 0.084
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 31 LTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
L C C + ++P C ++ C C+ E+ CP C +
Sbjct: 14 LLCLICKDIMT----DAVVIPCCGNSYCDECIRT----ALLESDEHTCPTCHQNDV---- 61
Query: 90 GVAALPPSFLVNQLLDLM 107
P + + N+ L
Sbjct: 62 ----SPDALIANKFLRQA 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 30.5 bits (69), Expect = 0.095
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
PC HTV C C +++ CP+CR ++
Sbjct: 33 FCPCGHTVCCESCAAQLQ----------SCPVCRSRVE 60
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29,
ataxia-telangiectasia group D-associated protein, ATDC,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.43.1.1
Length = 72
Score = 30.4 bits (69), Expect = 0.11
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 117 KCSTHNSQELLFCETCDTVFCLQCT 141
KC H LFC+T T C C
Sbjct: 20 KCPVHGKTMELFCQTDQTCICYLCM 44
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 31.0 bits (69), Expect = 0.14
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 16 VETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGT 74
V+ +I + + C E T C+H HC+SR + Q
Sbjct: 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV----- 102
Query: 75 LRCPICREQITIPRGG 90
CP+ + + G
Sbjct: 103 --CPLDNREWEFQKYG 116
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 31.2 bits (70), Expect = 0.17
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
E+ C C + P C H C CL+ I +S + C C +
Sbjct: 29 EAKYLCSACRNVL----RRPFQAQCGHRYCSFCLASILSSGPQN-----CAACVHEGI 77
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.8 bits (67), Expect = 0.17
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
LLPC HT C C+ +CP+CR+ +
Sbjct: 30 LLPCRHTCLCDGCVKYFQ----------QCPMCRQFVQ 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 30.0 bits (68), Expect = 0.19
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 17 ETVSINYEDF-NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHC----LSRIAASQTRE 71
+ + + + C C Y G+ LPC H C L ++
Sbjct: 26 PEILVTEDHGAVGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWL--------QK 76
Query: 72 TGTLRCPICREQITIP 87
+GT CP+CR P
Sbjct: 77 SGT--CPVCRCMFPPP 90
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 29.7 bits (67), Expect = 0.21
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
+PC H V C C + +CP+C IT
Sbjct: 40 FVPCGHLVTCKQCAEAVD----------KCPMCYTVIT 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 31.9 bits (70), Expect = 0.21
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 49 LLPCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
+PC H V C C + +CPICR I
Sbjct: 310 FIPCGHLVVCQECAPSLR----------KCPICRGIIK 337
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 30.2 bits (67), Expect = 0.22
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 48 KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
+++PC H C C A + G CP C + +
Sbjct: 16 RMIPCKHVFCYDC-----AILHEKKGDKMCPGCSDPVQ 48
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 29.9 bits (67), Expect = 0.25
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 116 PKCSTHNSQEL-LFCETCDTVFCLQCTGGSNH 146
C H +++ ++C T D + C C H
Sbjct: 60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRH 91
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 30.6 bits (69), Expect = 0.28
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 122 NSQELLFCETCDTVFCLQCTG 142
S+ + C+ C + +C G
Sbjct: 19 ESKFYIGCDRCQNWYHGRCVG 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.31
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 221 SPLSL--PDSSHALLITRRAYV 240
+ L L DS+ AL I +A +
Sbjct: 27 ASLKLYADDSAPALAI--KATM 46
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 29.3 bits (66), Expect = 0.32
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHC-LSRIAASQTRETGTLRCPICRE 82
E+ S L C C Y GE + + LPC+H C + + + CP+CR+
Sbjct: 9 EEHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDS-------CPVCRK 60
Query: 83 QIT 85
+T
Sbjct: 61 SLT 63
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 28.4 bits (64), Expect = 0.46
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 18 TVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS---RIAASQTRETGT 74
+ N + C C+C ++ + ++LPC+H C+ + +
Sbjct: 11 SYRFNPNNHQSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANRT------- 62
Query: 75 LRCPICREQI 84
CPICR
Sbjct: 63 --CPICRADS 70
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development,
MID-blastula- transition; NMR {Xenopus laevis} SCOP:
g.43.1.1
Length = 42
Score = 27.7 bits (62), Expect = 0.49
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 116 PKCSTHNSQELLFCETCDTVFCLQCTGGSNHSSTSGDSEHTIIP 159
KCS H+ + L+C+ T+ C+ C H+S H +P
Sbjct: 4 EKCSEHDERLKLYCKDDGTLSCVICRDSLKHAS------HNFLP 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 28.0 bits (62), Expect = 0.56
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 51 PCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
C HT+C C+ + G CP C +
Sbjct: 25 VCGHTLCESCVDLLFVR-----GAGNCPECGTPL 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 27.1 bits (60), Expect = 1.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 51 PCSHTV-CLHCLSRIAASQTRETGTLRCPICREQIT 85
H + C C ++ CP+CR+ I
Sbjct: 27 KTGHLMACFTCAKKLKKRNKP------CPVCRQPIQ 56
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 27.3 bits (61), Expect = 1.3
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT 85
++ C CL + + GE + LPC H C+ + + ++ CPICR I
Sbjct: 11 EDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITNKK-------CPICRVDIE 62
Query: 86 IP 87
Sbjct: 63 AQ 64
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like
fold, coiled coil, cytoplasm, metal-binding, muscle
protein, nucleus; 1.90A {Homo sapiens} PDB: 3q1d_A
Length = 48
Score = 26.4 bits (58), Expect = 1.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 116 PKCSTHNSQEL-LFCETCDTVFCLQCTGGSNHSS 148
P C H +++ ++C TC+ C C H +
Sbjct: 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 27.5 bits (60), Expect = 3.3
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 72 TGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ------- 124
G + C C +Q+ + PS V + I + S +
Sbjct: 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAE 71
Query: 125 --ELLFCETCDTVFCLQC 140
L+ C+ C FC +C
Sbjct: 72 GGNLICCDFCHNAFCKKC 89
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 27.7 bits (60), Expect = 4.3
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 6/141 (4%)
Query: 56 VCLHCLSRIAASQTRETGTLRCPIC-----REQITIPRGGVAALPPSFLVNQLLDLMSRQ 110
VC C+ TL PIC + + + +
Sbjct: 119 VCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVN 178
Query: 111 RRHIIPKCSTHNSQELLFCETCDTVFCLQCTGGSN-HSSTSGDSEHTIIPFSIAIKRMSE 169
+I P C+ N ++ CE C S + DS I ++ R
Sbjct: 179 SENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKS 238
Query: 170 ILLYKANECVSKNKVCPERKS 190
++ + + + S
Sbjct: 239 SHSALSSSSSTGSSTEFVQLS 259
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 26.3 bits (57), Expect = 6.1
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 73 GTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ-------- 124
G + C C +Q+ + PS V + I + S +
Sbjct: 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG 66
Query: 125 -ELLFCETCDTVFCLQC 140
L+ C+ C FC +C
Sbjct: 67 GNLICCDFCHNAFCKKC 83
>3onq_A Regulator of polyketide synthase expression; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 2.10A
{Bifidobacterium adolescentis}
Length = 262
Score = 26.8 bits (59), Expect = 7.2
Identities = 5/43 (11%), Positives = 13/43 (30%)
Query: 207 GAHTQTPPLFSHGLSPLSLPDSSHALLITRRAYVRRRGAHTQT 249
G L+ + L + +T +++ + T
Sbjct: 173 GDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENT 215
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human
immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB:
1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Length = 212
Score = 26.5 bits (58), Expect = 9.4
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 11/91 (12%)
Query: 77 CPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQELLFC------- 129
C C+ + G V P + LD + + I+ +
Sbjct: 40 CDKCQLKGEAMHGQVDCSPGIW----QLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQ 95
Query: 130 ETCDTVFCLQCTGGSNHSSTSGDSEHTIIPF 160
ET + L T S T
Sbjct: 96 ETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV 126
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 26.5 bits (58), Expect = 9.5
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 193 RPSAHKADAYVRRRGAHTQTPPLFSHGLSPLSLPDSSHALLITRRAYVRRRGAHTQTPPL 252
RPS + + R H PP PL+L +T+ +Y + A PL
Sbjct: 5 RPSLRRGEETSGARSLHEIAPPAEKAVRKPLNLLPFRKDTPMTKDSYFHKSRAGVAGAPL 64
Query: 253 --FSHGL 257
HG
Sbjct: 65 FVLLHGT 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.407
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,818,284
Number of extensions: 211521
Number of successful extensions: 653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 117
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)