BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11859
(851 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R C YP C K Y K SHLKAHLR H+GE+ +KC W+ C W+F+RSDEL+RH R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 778 KPYPCTLCVK 787
KP+ C +C +
Sbjct: 74 KPFQCGVCNR 83
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 92.4 bits (228), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/67 (55%), Positives = 45/67 (67%)
Query: 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
T C Y C K Y K SHLKAHLR H+GE+ + CDW C W+F+RSDEL+RH R H G +
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 779 PYPCTLC 785
P+ C C
Sbjct: 66 PFQCQKC 72
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R F C YP C K Y K+SHL+ H R+H+GE+ ++CD++DC+ +FSRSD+L RH+R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 778 KPYPCTLCVKK 788
KP+ C C +K
Sbjct: 65 KPFQCKTCQRK 75
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 707 LIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766
L R + V+ FQC C + +++ HLK H R H+GE+ F C W C+ +F+RSDE
Sbjct: 54 LKRHQRRHTGVKPFQCK--TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE 111
Query: 767 LSRHRRSH 774
L RH H
Sbjct: 112 LVRHHNMH 119
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%)
Query: 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
T C Y C K Y K SHLKAHLR H+GE+ + CDW C W+F+RSDEL+RH R H G +
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 779 PYPCTLC 785
P+ C C
Sbjct: 65 PFQCQKC 71
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R+ C++P C K Y K SHLKAH R H+GE+ F C W+ C+ +F+RSDELSRHRR+H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL 784
PEC K +++++HL+AH R H+GE+ +KC +C FSR D L H+R+H G KPY C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 785 CVK 787
C K
Sbjct: 167 CGK 169
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 708 IRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDEL 767
+ Q E + + C PEC K +++ HL H R H+GE+ +KC +C FS +L
Sbjct: 10 VAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDL 65
Query: 768 SRHRRSHFGIKPYPCTLCVK 787
+RH+R+H G KPY C C K
Sbjct: 66 TRHQRTHTGEKPYKCPECGK 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 707 LIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766
L R + + ++C PEC K +++ ++L+AH R H+GE+ + C +C FS+
Sbjct: 65 LTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAH 120
Query: 767 LSRHRRSHFGIKPYPCTLCVK 787
L H+R+H G KPY C C K
Sbjct: 121 LRAHQRTHTGEKPYKCPECGK 141
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
PEC K +++ +L H R H+GE+ +KC +C FSR D L+ H+R+H G K
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCP--ECGKSFSRRDALNVHQRTHTGKK 188
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF--SKLPVFERL 276
R+VL+TG TGF+G+ L+ +LLR G++ L RA+ + RL + S P R
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAAN 336
KE A RL ++ GD + +LG+ L E V ++ + AA + E N
Sbjct: 134 FKELAAD--RLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVN-AFPYHELFGPN 190
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAME---WMD 393
GT L+ IAL KL F + STA D+ A+E + +
Sbjct: 191 VAGTAELIRIAL-TTKLKPFTYVSTA---------------------DVGAAIEPSAFTE 228
Query: 394 DETIKQLTP--KILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPSIVL 441
D I+ ++P + G Y +K E L+ E LPV + R +L
Sbjct: 229 DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGXIL 280
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ + ++C PEC K +++ S+L+ H R H+GE+ +KC +C FS+S +L +H+R+H
Sbjct: 1 MEKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHT 56
Query: 776 GIKPYPCTLCVK 787
G KPY C C K
Sbjct: 57 GEKPYKCPECGK 68
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
PEC K +++ S L+ H R H+GE+ +KC +C FSRSD LSRH+R+H K
Sbjct: 36 PECGKSFSQSSDLQKHQRTHTGEKPYKCP--ECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ F C W C W+FSRSDELSRHRRSH G+KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 694 QILPAYLVDFIMVLIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
++ P ++V +R+ T E + +CT+ C K Y+++ +LK HLR H+GE+ + C+
Sbjct: 45 ELRPFKAQYMLVVHMRRHTGE---KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 754 WQDCKWQFSRSDELSRHR-RSHFGIKPYPCTL--CVKK 788
+ C FS + + ++H+ R+H KPY C L C K+
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR 139
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+ F C +P C K +A+ +LK H R H+GE+ FKC+++ C +F+ S + +H H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 778 KPYPCT 783
K P +
Sbjct: 149 KSGPSS 154
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 722 CTYPECLK----FYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
C + EC + F AK L H+R H+GE+ F C + C F+RS+ L H+R+H G
Sbjct: 60 CYWEECPREGKSFKAKYK-LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 778 KPYPC 782
KP+ C
Sbjct: 119 KPFKC 123
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + ++ S+L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ + L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ + L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H G
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 59
Query: 778 KPYPCTLCVKK 788
KP+ C +C +K
Sbjct: 60 KPFACDICGRK 70
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H
Sbjct: 34 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHL 85
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
ER + C + C +FSRSDEL+RH R H G KP+ C +C++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR 41
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H G
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 778 KPYPCTLCVKK 788
KP+ C +C +K
Sbjct: 61 KPFACDICGRK 71
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
ER + C + C +FSRSDEL+RH R H G KP+ C +C++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR 42
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RH + H
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHL 86
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+ + C++ +C Y K L+AHL +H+GE+ F C + C+ F+ L+RH +H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 778 KPYPC 782
K + C
Sbjct: 62 KNFTC 66
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+ F C C K + + HL H H+GE++F CD C +F+ + +H I
Sbjct: 32 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Query: 778 K 778
K
Sbjct: 92 K 92
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 724 YP-ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
YP +C K + S H+ H G R + C C +F L H + H GIKPY C
Sbjct: 11 YPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 783 TLCVKKSLLAILNCPHEAECTPTFK-HRAEKTST--PGPS 819
+C K+ + H CT +++ +AE+ +T GPS
Sbjct: 69 NICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 33/88 (37%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTP 804
SG++ + C C F+ + RH H G++PY C +C KK
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKK---------------- 46
Query: 805 TFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
FK K HL H+K+H
Sbjct: 47 -FK-------------MKHHLVGHMKIH 60
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL- 784
EC K + + S LK H H+GE+ F+C ++ C +FS L H R H G +PY C
Sbjct: 39 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 98
Query: 785 -CVKK 788
C KK
Sbjct: 99 GCNKK 103
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 707 LIRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDE 766
L R + + FQCT+ C K ++ +L+ H+R H+G+R + C + C +F++S
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 767 LSRHRRSH 774
L H +H
Sbjct: 110 LKSHILTH 117
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
RT C + C K + S ++ HL H G R C +C F S +L RH+ H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGE 60
Query: 778 KPYPCTL 784
KP+ CT
Sbjct: 61 KPFQCTF 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR 771
++ FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RHR
Sbjct: 1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
+ F+C C FSRSD L+ H R+H G KP+ C +C +K
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 40
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ ++L H+R H+G++ F+C C FS+ L++H R+H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 716 LVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ R + C C + +++ ++L H+R H+G++ F+C C FS+ L+ H R+H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHT 58
Query: 776 GIKPYPCTLCVKK 788
G KP+ C +C +K
Sbjct: 59 GEKPFACDICGRK 71
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
FQC C++ +++ + L AH+R H+GE+ F CD C +F+ +RH + H K
Sbjct: 35 FQCRI--CMRNFSQQASLNAHIRTHTGEKPFACDI--CGRKFATLHTRTRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK-SLLAILN 795
ER + C + C +FS+ L H R H G KP+ C +C++ S A LN
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLN 51
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI--KPYPCTL 784
C K + + HL H HSGE+ + C C +F R D +S H RSH G KPY C
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 785 CVK 787
C K
Sbjct: 71 CGK 73
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
SG C+ C F L+RH+ SH G KPY C +C
Sbjct: 3 SGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
C K +++ LK H+R H+G + +KC + C + + S L++H R H +P+ C +C
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
V+ ++C C A S L HLR HS ER FKC Q C + S +L+ H RSH G
Sbjct: 34 VKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTG 89
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
R + C + C +FSRSDEL+RH R H G KP+ C +C++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R + C C + +++ L H+R H+G++ F+C + C FSRSD L+ H R+H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTH 72
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S+A + DQ K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 708 IRQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDEL 767
+ +K + + + C++ +C Y K L+AHL +H+GE+ F C + C+ F+ L
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 768 SRHRRSHFGIKPYPC 782
+RH +H G K + C
Sbjct: 61 TRHSLTHTGEKNFTC 75
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 713 FENL-VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR 771
F N+ + + C + C K + K + LK H H+ + ++C + C +FS L RH
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 772 RSHFGIKPYPC 782
+ H G YPC
Sbjct: 157 KVHAG---YPC 164
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH 770
+ F C C K + + HL H H+GE++F CD C +F+ + +H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S A + DQ K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI STA + D K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSP 382
N GT RL+ A++ + FI S+A + DQ K+ + +P +P SP
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSP 148
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSP 382
N GT RL+ A++ + FI S A + DQ K+ + +P +P SP
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSP 148
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S+A + D K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
R +KCD +C FS S +LS+HRR+H G KPY C C K
Sbjct: 17 RRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R ++C EC K ++ S L H R H+GE+ +KCD +C F + L H R H G
Sbjct: 17 RRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGS 72
Query: 778 KP 779
P
Sbjct: 73 GP 74
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S+A + D K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S A + D K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSPHDIMRAM 389
N GT RL+ A++ + FI S A + D K+ + +P +P SP+ + M
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLM 155
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 34/171 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 334
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 335 ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQ-KVLEEKLYP--SPVSP 382
N GT RL+ A++ + FI S A + D K+ + +P +P SP
Sbjct: 100 -NVNGTLRLIS-AMRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSP 148
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERS---FKCDWQDCKWQFSRSDELSRHRRSH 774
+ F+C P+C K Y + +L H R+ RS F C C+ F R EL H SH
Sbjct: 34 KPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSH 89
Query: 775 FGIKPYPCTLCVKK 788
G PY C+ C ++
Sbjct: 90 TGEMPYKCSSCSQQ 103
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+G + F+C W DC FSRSD L+ HR+ H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRH 744
++ FQCT+P+C + +++ HL H +RH
Sbjct: 5 IKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
SF C+ C F+R + L RH RSH KPYPC LC
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH 770
C + +A+ HLK H R H+ E+ + C C F+R D L RH
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRH 49
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
EC K +++ S L H R H+GE+ +KC +C FS++ L H+R H
Sbjct: 19 ECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIH 65
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
E+ + C +C FSRS L +H+R H G KPY C C K
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
R F C W C +F+RSDEL RH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCV 786
C + + K +L H R H+ ER + CD C F R D L HR H KP+ C C
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 787 K 787
K
Sbjct: 81 K 81
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
C K + + HL+ H HS E+ FKC Q+C F +S L+ H+ H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLH 96
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 722 CTYPECLKFYAKMSHLKAHLRRHSGER 748
C C K Y K SHL+AHLR H+GER
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+G + F+C DC W FSRSD L+ HR+ H
Sbjct: 3 TGIKPFQC--PDCDWSFSRSDHLALHRKRH 30
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+ ++C C + +L +H H+GE+ ++C+ C QF+R L H R H G
Sbjct: 16 KPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGE 71
Query: 778 KP 779
KP
Sbjct: 72 KP 73
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
++ +KCD C+ F L+ H+ H G KPY C +C
Sbjct: 15 DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
ER F C++ C + + LSRHRR+H G +P C C K
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGK 40
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R F C + C K Y S L H R H G R C +C F E++RH + H
Sbjct: 3 RPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C + C K + K + LK H H+ + ++C + C +FS L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 58
Query: 780 YPC 782
YPC
Sbjct: 59 YPC 61
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 722 CTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYP 781
C + C K + K + LK H H+ + ++C + C +FS L RH + H G YP
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YP 60
Query: 782 C 782
C
Sbjct: 61 C 61
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 35/177 (19%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTGG GF+G + +L PD +V + + G P A L + P
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDW-EVINIDKLGYGSNP-ANLKDLEDDP--------- 54
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVA------ 334
R ++GD+ +D +++E V V +G L E+ + +++
Sbjct: 55 -----RYTFVKGDV---------ADYELVKELVRKV-DGVVHLAAESHVDRSISSPEIFL 99
Query: 335 -ANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPD--QKVLEEKLYPSPVSPHDIMRA 388
+N GT LL+ + V F+H ST + D + E P SP+ +A
Sbjct: 100 HSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKA 156
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 722 CTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
C +P C + ++ +L H + +H ++SF C C F+ L H + H + Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 781 PC 782
C
Sbjct: 70 IC 71
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDW 754
++F C P C K + HLK H++ HS R + C++
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCV 786
C K + + S L HL HS R + C + C +F + ++ +H H G KP+ C +C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 64
Query: 787 K 787
K
Sbjct: 65 K 65
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
R + C Y C K + + S +K H H+GE+ KC Q C FS+S L H R H G
Sbjct: 27 TRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 753 DWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
D + C F RS LS H H +PYPC C K+
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKR 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERS 749
R F+C EC K + + SHL HLR HS E+S
Sbjct: 11 RPFKCN--ECGKGFGRRSHLAGHLRLHSREKS 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C FS++ +L+RH+R H G KP
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C F+++ L+RHRR H G KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 721 QCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+C+Y C KF+ +L HLR H+GE+ +KC++ C++ ++ L H H
Sbjct: 6 ECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERH 55
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R +G + F+C DC FSRSD L+ HR+ H
Sbjct: 4 RGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+TGG G +G L+E L +I + KR + P
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP------------------- 63
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
++ L +IEG + A L + D + + V + AA+ K + E+ A N +G+
Sbjct: 64 ---VAGLSVIEGSVTDAGLLERAFDSF----KPTHVVHSAAAYKDPDDWAEDAATNVQGS 116
Query: 341 QRLLDIALK--MKKLVAFIHFSTAFCH 365
+ A K +K+L ++F TA C+
Sbjct: 117 INVAKAASKAGVKRL---LNFQTALCY 140
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C FSR+ +LS+H++ H G KP
Sbjct: 10 EKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KCD C +FS+S L H+R H G KP
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ FQC EC K + + SHL +H R H+GE+
Sbjct: 11 KPFQCE--ECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ F+C ++C +F+++ L H+R H G KP
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C F+++ L+ H+R H G+KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKA 262
VLVTGG GF+G ++E LL ++ + L KR PK
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKG 44
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ FKC ++C +F+++ +L H+R H G KP
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
SGE ++C +C F+R D+L H+R+H G
Sbjct: 6 SGENPYEC--SECGKAFNRKDQLISHQRTHAG 35
>pdb|3CYG|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Fervidobacterium Nodosum Rt17-B1
pdb|3CYG|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Fervidobacterium Nodosum Rt17-B1
Length = 222
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 569 GMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 602
G H + +F T N D KN ++L L+D I E+ + T
Sbjct: 101 GAHGITFFETYNIDLKNSKVLKLYDIIKEEAEDT 134
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQT 33
H + +F T N D KN ++L L+D I E+ + T
Sbjct: 103 HGITFFETYNIDLKNSKVLKLYDIIKEEAEDT 134
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ + CD+ C F S EL RH+R H G KP
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
SGE+ + C Q+C F++S LS HRR H G
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++ FKC+ +CK F++S L+ H+R H G KP
Sbjct: 10 KKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 50/231 (21%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
GR V VTGGTGF+G +++ LL + Y + R + R F
Sbjct: 2 GR-VCVTGGTGFLGSWIIKSLLENG------YSVNTTIRADPERKRDVSF---------L 45
Query: 278 KECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA-- 335
P +LH A+L DS ++ V +F+ A+ + E +
Sbjct: 46 TNLPGASEKLH-----FFNADLSNPDSFAAAIEGCVG-IFHTASPIDFAVSEPEEIVTKR 99
Query: 336 NTRGTQRLLDIALKMKKLVAFIHFST----AFCHPDQKVLEEKLYPSPVSPHDIMRAMEW 391
G +L + K + FI+ S+ +F D+ VL+E +W
Sbjct: 100 TVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDES---------------DW 144
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLP 442
D + ++ + P +Y +K L E V E+ + + +V +++LP
Sbjct: 145 SDVDLLRSVK-----PFGWNYAVSKTLAEKAVLEFGEQNGIDVV--TLILP 188
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ ++C+ +C FS++ +L+RH+R H G KP
Sbjct: 11 KPYQCN--ECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C F+++ L+RHR H G KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1JR3|D Chain D, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JQJ|C Chain C, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1JQJ|D Chain D, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1XXI|A Chain A, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|F Chain F, Adp Bound E. Coli Clamp Loader Complex
pdb|3GLF|A Chain A, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|F Chain F, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLG|A Chain A, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|F Chain F, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLH|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|K Chain K, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLI|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 343
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 181 SATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRS 220
+A WFT+ AN+SV +C+ + + RW A R+
Sbjct: 123 NAAWFTALANRSVQV-------TCQTPEQAQLPRWVAARA 155
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ F+C +C FS S +L+ H+R H G KP
Sbjct: 10 EKPFEC--AECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1XXH|A Chain A, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|F Chain F, Atpgs Bound E. Coli Clamp Loader Complex
Length = 343
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 181 SATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRS 220
+A WFT+ AN+SV +C+ + + RW A R+
Sbjct: 123 NAAWFTALANRSVQV-------TCQTPEQAQLPRWVAARA 155
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C F + LSRH+R H G KP
Sbjct: 10 EKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R + CD C F R+ +L RH++SH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC +C F R L+ HRR H G +P
Sbjct: 10 EKPYKC--SECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 737 LKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
L+ H R H +R FKC++ C + + LS+H + G
Sbjct: 25 LRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHG 62
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFN 318
RK+ P Q++ L + L +LG+KD+ L+ E V +V N
Sbjct: 376 RKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVN 417
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 727 CLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCV 786
C + Y ++ L+ H HS E+ + C + C+ F ++ ++H H G + Y C C
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLACG 85
Query: 787 K 787
K
Sbjct: 86 K 86
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ ++CD C+ FS L++H+R H G KP
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 113 FQEDSTKTIVEHNLPDQTDVRGIHETDFKFTIKYREFTQEMLSELISHSLYCRQRIKYEC 172
F +TK I L D V I D +T E + + + + H + IK+ C
Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWC 153
Query: 173 HQAPLDLHSATWFTSAANQSVDYVGDVKR 201
+ A L +A + A + Y GD R
Sbjct: 154 YHAGHVLGAAMFMIEIAGVKLLYTGDFSR 182
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ + C+ +C FS+ LS H+R+H G KP
Sbjct: 10 EKPYGCN--ECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
E+ +KC+ +C F+++ L RHR H G KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 141 KFTIKYREFTQEMLSELISHSLYCRQRIKYECHQAPLDLHSATWFTSAANQSVDYVGDVK 200
K+ ++ + F + ++ + +K E A + A W + ++ Y K
Sbjct: 276 KYALERKTFGKLLVEHQAISFMLAEMAMKVEL--ARMSYQRAAWEVDSGRRNTYYASIAK 333
Query: 201 RGSCECADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSC 242
A GD+A A +V + GG GF + +EKL+R
Sbjct: 334 ------AFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 369
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 141 KFTIKYREFTQEMLSELISHSLYCRQRIKYECHQAPLDLHSATWFTSAANQSVDYVGDVK 200
K+ ++ + F + ++ + +K E A + A W + ++ Y K
Sbjct: 276 KYALERKTFGKLLVEHQAISFMLAEMAMKVEL--ARMSYQRAAWEVDSGRRNTYYASIAK 333
Query: 201 RGSCECADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSC 242
A GD+A A +V + GG GF + +EKL+R
Sbjct: 334 ------AFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 369
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 175 APLDLHSATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGKVL 234
A + A W + ++ Y K A GD+A A +V + GG GF +
Sbjct: 333 ARMSYQRAAWEVDSGRRNTYYASIAK------AFAGDIANQLATDAVQILGGNGFNTEYP 386
Query: 235 LEKLLRSC 242
+EKL+R
Sbjct: 387 VEKLMRDA 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,668,654
Number of Sequences: 62578
Number of extensions: 1024270
Number of successful extensions: 3553
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 3304
Number of HSP's gapped (non-prelim): 249
length of query: 851
length of database: 14,973,337
effective HSP length: 107
effective length of query: 744
effective length of database: 8,277,491
effective search space: 6158453304
effective search space used: 6158453304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)