RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11859
(851 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 163 bits (414), Expect = 2e-43
Identities = 70/337 (20%), Positives = 114/337 (33%), Gaps = 54/337 (16%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
R+VL+TG TGF+G+ L+ +LLR G++ L RA+ + RL + E LR
Sbjct: 73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLR 132
Query: 278 KECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANT 337
RL ++ GD + +LG+ L E V ++ + AA + E N
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF-PYHELFGPNV 191
Query: 338 RGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
GT L+ IAL KL F + STA V A D +
Sbjct: 192 AGTAELIRIALTT-KLKPFTYVSTAD----------------VGAAIEPSAFTEDADIRV 234
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVL----PSFQEPVPGW 451
T + G Y +K E L+ E LPV + R ++L + Q + W
Sbjct: 235 ISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDW 294
Query: 452 VDSL-------------NGPVGVLVASGKG---------VVRSMI------LNDLSTETQ 483
V + + V ++
Sbjct: 295 VTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFA 354
Query: 484 VFNISSNEVEAITWGEIISRGKQLIYQYPLEAGLWYP 520
+++ + + I E + + YP+ +
Sbjct: 355 TYHVMNPHDDGIGLDEYVDWLIE--AGYPIRRIDDFA 389
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 126 bits (320), Expect = 7e-35
Identities = 46/116 (39%), Positives = 58/116 (50%), Gaps = 30/116 (25%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
R C YP C K Y K SHLKAHLR H+GE+ +KC W+ C W+F+RSDEL+RH R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 778 KPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHE 833
KP+ C +C + F HLA H+K H+
Sbjct: 74 KPFQCGVCNRS-----------------FSRSD-------------HLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 121 bits (307), Expect = 3e-33
Identities = 44/115 (38%), Positives = 54/115 (46%), Gaps = 30/115 (26%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
T C Y C K Y K SHLKAHLR H+GE+ + CDW C W+F+RSDEL+RH R H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 778 KPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+P+ C C + F HLA H+K H
Sbjct: 64 RPFQCQKCDRA-----------------F-------------SRSDHLALHMKRH 88
Score = 71.4 bits (176), Expect = 2e-15
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
+ C + C +A+ L H R+H+G R F+C C FSRSD L+ H + HF
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDRAFSRSDHLALHMKRHF 89
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 107 bits (269), Expect = 2e-28
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R+ C++P C K Y K SHLKAH R H+GE+ F C W+ C+ +F+RSDELSRHRR+H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 62.8 bits (153), Expect = 1e-12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL--CVKK 788
S S RS C C + +S L H R+H G KP+ C+ C ++
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 104 bits (261), Expect = 5e-27
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C + C K + K + LK H H+ + ++C + C +FS L RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 780 YPCTLCVK 787
C
Sbjct: 62 KKDDSCSF 69
Score = 62.3 bits (152), Expect = 2e-12
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSH 774
++C + C K ++ S LK H + H+G K D C + +H H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD--SCSFVGKTWTLYLKHVAECH 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 93.1 bits (232), Expect = 2e-23
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 733 KMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
M++L ++ R + C + C +FSRSDEL+RH R H G KP+ C +C++
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Score = 73.1 bits (180), Expect = 2e-16
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R + C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTH 72
Score = 31.9 bits (73), Expect = 0.096
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHS 745
+ FQC C++ +++ HL H+R H+
Sbjct: 47 QKPFQC--RICMRNFSRSDHLTTHIRTHT 73
Score = 28.8 bits (65), Expect = 1.2
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 42/93 (45%)
Query: 760 QFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTF-----------KH 808
+ + L + ++PY C + C F H
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPV---------------ESCDRRFSRSDELTRHIRIH 44
Query: 809 RAEKTSTPGPSMCKR---------HLAKHLKVH 832
+K P C+ HL H++ H
Sbjct: 45 TGQK-----PFQCRICMRNFSRSDHLTTHIRTH 72
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 89.7 bits (223), Expect = 2e-22
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F C W C W+FSRSDELSRHRRSH G+KP +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 46.9 bits (112), Expect = 2e-07
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
+ F CT+P C +++ L H R HSG +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 89.9 bits (224), Expect = 1e-21
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 26/126 (20%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C YP C K Y K+SHL+ H R+H+GE+ ++CD++DC+ +FSRSD+L RH+R H G+KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 780 YPCTLCVKK-SLLAILNC---------PHE---AECTPTFKHRAEKTSTPGPSMCKRHLA 826
+ C C +K S L P C F L
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD-------------ELV 113
Query: 827 KHLKVH 832
+H +H
Sbjct: 114 RHHNMH 119
Score = 52.1 bits (126), Expect = 2e-08
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 28/88 (31%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTP 804
S +R F C + C ++ + L H R H G KPY C +C
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCD---------------FKDCER 46
Query: 805 TFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
F L +H + H
Sbjct: 47 RFSRSD-------------QLKRHQRRH 61
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 86.2 bits (214), Expect = 7e-20
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C +P C K +A+ +LK H R H+GE+ FKC+++ C +F+ S + +H H K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 780 YPCT 783
P +
Sbjct: 151 GPSS 154
Score = 75.8 bits (187), Expect = 3e-16
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 28/108 (25%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTL 784
P K + L H+R H+GE+ F C + C F+RS+ L H+R+H G KP+ C
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 785 CVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
C F + KH+ VH
Sbjct: 126 ---------------EGCDRRFAN-------------SSDRKKHMHVH 145
Score = 60.0 bits (146), Expect = 9e-11
Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 23/107 (21%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ + + S + C FS EL H P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 786 VKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
CP +FK + L H++VH
Sbjct: 60 CYWE-----ECP---REGKSFKAKY-------------KLVNHIRVH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 82.6 bits (205), Expect = 2e-19
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLR-RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
C +P C + ++ +L H + +H ++SF C C F+ L H + H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 779 PYPCTLCVK 787
Y C
Sbjct: 68 DYICEFSGP 76
Score = 58.7 bits (143), Expect = 4e-11
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 29/90 (32%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRR-SHFGIKPYPCTLCVKKSLLAILNCPHEAEC 802
SG CD+ C FS L+ H++ H K + C E C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP---------------EPAC 46
Query: 803 TPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+F K+HL +H+K+H
Sbjct: 47 GKSFNF-------------KKHLKEHMKLH 63
Score = 47.2 bits (113), Expect = 4e-07
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
++F C P C K + HLK H++ HS R + C+
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 83.0 bits (206), Expect = 9e-19
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIK 778
+CT+ C K Y+++ +LK HLR H+GE+ + C+ + C FS + + ++H R+H K
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 779 PYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
PY C L CT + PS L KH+K
Sbjct: 128 PYVCKL---------------PGCTKRYTD---------PS----SLRKHVKTV 153
Score = 61.5 bits (150), Expect = 3e-11
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 711 KTF---ENL---VRT------FQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCDWQDC 757
K++ ENL +R+ + C + C K ++ S H R HS E+ + C C
Sbjct: 77 KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGC 136
Query: 758 KWQFSRSDELSRHRRSHFG 776
+++ L +H ++ G
Sbjct: 137 TKRYTDPSSLRKHVKTVHG 155
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 28/84 (33%)
Query: 752 CDWQDCKWQFSRSDELSRH---RRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKH 808
C W C +F ++L H H K + C C FK
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------GCS---RELRPFKA 51
Query: 809 RAEKTSTPGPSMCKRHLAKHLKVH 832
+ L H++ H
Sbjct: 52 QY-------------MLVVHMRRH 62
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 87.7 bits (218), Expect = 1e-18
Identities = 42/262 (16%), Positives = 72/262 (27%), Gaps = 72/262 (27%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
V G TG +G + + G + ++ R P +++ + L
Sbjct: 16 YAVLGATGLLGHHAARAIRAA----GHDLVLIHR------PSSQIQRLAYLEP------- 58
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKEN-VAANT 337
++L D L + V A + VA+
Sbjct: 59 --------ECRVAEML-------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASAL 103
Query: 338 RGTQRLLDIALKM--KKLVAFIHFSTA---FCHPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
T L+ +++ + +A HP E L+ +
Sbjct: 104 GQTNPFYAACLQARVPRIL---YVGSAYAMPRHPQGLPGHEGLFYDSLP----------- 149
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY-KTKLPVVIVRPSIVL-PSFQEPVPG 450
+SY K + E + LPVVI P +VL P G
Sbjct: 150 --------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTG 195
Query: 451 --WVDSLNGPVGVLVASGKGVV 470
NG + VA + V+
Sbjct: 196 RVITAIGNGEMTHYVAGQRNVI 217
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 78.8 bits (195), Expect = 6e-17
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 28/113 (24%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C++ +C Y K L+AHL +H+GE+ F C + C+ F+ L+RH +H G K
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 780 YPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+ C C F +A ++ KH
Sbjct: 73 FTCD---------------SDGCDLRFTTKA-------------NMKKHFNRF 97
Score = 67.6 bits (166), Expect = 5e-13
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C + C K + K + LK H H+ + ++C + C +FS L RH + H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 780 YPCTLC 785
C
Sbjct: 165 KKDDSC 170
Score = 66.5 bits (163), Expect = 1e-12
Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 31/122 (25%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK- 778
F C C K + + HL H H+GE++F CD C +F+ + +H IK
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 779 -PYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK- 836
Y C H C FK L H H +Q
Sbjct: 103 CVYVC---------------HFENCGKAFKKHN-------------QLKVHQFSHTQQLP 134
Query: 837 YK 838
Y+
Sbjct: 135 YE 136
Score = 61.1 bits (149), Expect = 8e-11
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 28/94 (29%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPH 798
+ + C + DC ++++ +L H H G KP+PC
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC---------------K 46
Query: 799 EAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
E C F HL +H H
Sbjct: 47 EEGCEKGFTSLH-------------HLTRHSLTH 67
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 75.2 bits (186), Expect = 7e-17
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C + +++ L H+R H+G++ F+C C FSRSD L+ H R+H G KP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 780 YPCTLCVK 787
+ C +C +
Sbjct: 63 FACDICGR 70
Score = 55.9 bits (136), Expect = 5e-10
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK-SLLAILNC--------- 796
ER + C + C +FS+S L+RH R H G KP+ C +C++ S L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 797 PHE-AECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK 836
P C F +H K+H RQK
Sbjct: 62 PFACDICGRKFARSD-------------ERKRHTKIHLRQK 89
Score = 32.8 bits (76), Expect = 0.076
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
F C C + +A+ K H + H ++
Sbjct: 63 FACD--ICGRKFARSDERKRHTKIHLRQK 89
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 73.7 bits (182), Expect = 3e-16
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
++ FQC C++ +++ HL H+R H+GE+ F CD C +F+RSDE RHR
Sbjct: 1 MKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQ-H 55
Query: 777 IKPYPCTLCVK 787
I P +
Sbjct: 56 ILPILEDKVEE 66
Score = 46.0 bits (110), Expect = 1e-06
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHR---RSHFG 776
F C C + +A+ K H D + S++ L + G
Sbjct: 32 FACD--ICGRKFARSDERKRHRDIQ-HILPILED--KVEELLSKNYHLENEVARLKKLVG 86
Query: 777 IK 778
+
Sbjct: 87 ER 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.1 bits (183), Expect = 5e-16
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
FQCT+ C K ++ +L+ H+R H+G+R + C + C +F++S L H +H K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 780 Y 780
Sbjct: 123 N 123
Score = 71.0 bits (175), Expect = 6e-15
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
RT C + C K + S ++ HL H G R C +C F S +L RH+ H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGE 60
Query: 778 KPYPCTL--CVKK-SLLAILN-------------CPHEAECTPTFKHRAEKTSTPGPSMC 821
KP+ CT C K+ SL L CP + C F
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD-GCNKKFAQST----------- 108
Query: 822 KRHLAKHLKVHERQK-YK 838
+L H+ H + K +
Sbjct: 109 --NLKSHILTHAKAKNNQ 124
Score = 48.3 bits (116), Expect = 5e-07
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 29/100 (29%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK-SLLAILN---------- 795
R+ C + C F + + +H +H G + + C C K + L
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 796 ---CPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
C E C F +L H+++H
Sbjct: 62 PFQCTFE-GCGKRFSLDF-------------NLRTHVRIH 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 8e-14
Identities = 85/609 (13%), Positives = 168/609 (27%), Gaps = 153/609 (25%)
Query: 283 QLSRLHIIEGDILQANLG--IKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR-- 338
+ DIL + + D +Q+ + + + E+ + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-------KEEIDHIIMSKDAVS 62
Query: 339 GTQRLLDIAL-KMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
GT RL L K +++V F + K L + P + R D
Sbjct: 63 GTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNG 457
++ + R + + L + +RP+ V ++G
Sbjct: 121 N--DNQVFAKY-----NVSR--LQPYLKLRQAL--LELRPA-----------KNV-LIDG 157
Query: 458 PVGVLVASGKGVVRSMILNDLSTET----QVFNISSNEVEAITWGEIISRGKQLIYQYPL 513
+G SGK V + + ++F ++ + ++ ++L+YQ
Sbjct: 158 VLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQID- 210
Query: 514 EAGLWYPNGQIRSNRFWHYFFVIFTQILPAYLVDFIMVLIRQKTFLV--RVQN-RIWLGM 570
PN RS+ + I + A L + + LV VQN + W
Sbjct: 211 ------PNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--- 259
Query: 571 HLLEYF--------TTRNWDFKNKRLLALHDNIS-EKDKQTFYIANIDVNIDDYLKTIIL 621
F TTR + A +IS + T D +K+++L
Sbjct: 260 ---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSLLL 308
Query: 622 GARQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLLGSVPKLISTTGLWYPNGQIRS 681
L LP+ P+ +S +G
Sbjct: 309 K----YLDCRPQDLPREVLTTN--------------------PRRLSIIAESIRDGLATW 344
Query: 682 NRFWHYFFVIFTQIL--------PA----YLVDFIM----VLIRQKTFENLVRTFQCTYP 725
+ + H T I+ PA + I + F
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKS 402
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ + K+ H + + + E + + + +E + HR + Y
Sbjct: 403 DVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKT 458
Query: 786 VKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHER-QKYKMMMK-- 842
+ ++ H+ HLK E ++ +
Sbjct: 459 F---------DSDDLIPPYLDQYFYS------------HIGHHLKNIEHPERMTLFRMVF 497
Query: 843 -SMRKMKNK 850
R ++ K
Sbjct: 498 LDFRFLEQK 506
Score = 53.3 bits (127), Expect = 3e-07
Identities = 100/702 (14%), Positives = 201/702 (28%), Gaps = 243/702 (34%)
Query: 114 QEDSTKTIVEHNLPDQTDVRGIHETDFKFTIKYREFTQEMLS-ELISHSLYCRQRIKYEC 172
+ K I+ + D K ++ + +LS E I H + + +
Sbjct: 14 HQYQYKDILSVFEDAF-----VDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVS--- 62
Query: 173 HQAPLDLHSATWFTSAANQSVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGFMGK 232
T + +V +V R + +
Sbjct: 63 ---GTLRLFWTLLSKQEEMVQKFVEEVLR-----INYK----F----------------- 93
Query: 233 VLLEKLLRSCPD---IGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHI 289
L+ + + ++YI R + + F+K V R + +L +
Sbjct: 94 -LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVS---RLQPYLKLRQA-- 143
Query: 290 IEGDILQANLGIKDSDLLMLQEEVSVVFNGAA-----SLKLEAELKENVAANTRGTQRLL 344
LL L+ +V+ +G + L+ + Q +
Sbjct: 144 ----------------LLELRPAKNVLIDGVLGSGKTWVALD-------VCLSYKVQCKM 180
Query: 345 DIALKMKKLVAFIHFSTAFCHPDQKVLE--EKLY----PSPVSPHDIMRA----MEWMDD 394
D + +++ C+ + VLE +KL P+ S D + +
Sbjct: 181 DFK------IFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLV-DEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453
E + L K P+ N LV V+ + +F
Sbjct: 233 ELRRLLKSK---PYENCL---------LVLLN---------VQNAKAWNAF--------- 262
Query: 454 SLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIYQY-- 511
N +L+ + R + D + +IS + K L+ +Y
Sbjct: 263 --NLSCKILLTT-----RFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLD 312
Query: 512 ------PLEA-----------GLWYPNGQIRSNRFWHYF--------------------- 533
P E +G + + H
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 534 -----FVIF-------TQIL-------PAYLVDFIMVLIRQKTFLVRVQNRIWLGMHLLE 574
+F T +L V ++ + + + + + + + +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI- 431
Query: 575 YFTTRNWDFKNKRLLALHDNISEKDK--QTFYIANI-DVNIDDYLKTIILGARQYCLKEP 631
Y + K + ALH +I + +TF ++ +D Y + I G + LK
Sbjct: 432 YLELK---VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-G---HHLKN- 483
Query: 632 LTTLPKARRQIKF--LYVLD-RIGHALILFLLGSVPKLISTTGLWYPNGQIRSN----RF 684
+ R F ++ LD R FL K+ + W +G I + +F
Sbjct: 484 ---IEHPERMTLFRMVF-LDFR-------FLEQ---KIRHDSTAWNASGSILNTLQQLKF 529
Query: 685 WHYFFV----IFTQILPAYLVDFIM----VLIRQKTFENLVR 718
+ + + +++ A L DF+ LI K + +L+R
Sbjct: 530 YKPYICDNDPKYERLVNAIL-DFLPKIEENLICSK-YTDLLR 569
Score = 32.9 bits (74), Expect = 0.64
Identities = 57/369 (15%), Positives = 105/369 (28%), Gaps = 90/369 (24%)
Query: 3 LLEYF--------TTRNWDFKNKRLLALHDNIS-EKDKQTFYIANIDVNIDDYLKTIILG 53
F TTR + A +IS + T D +K+++L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSLLLK 309
Query: 54 ARQYCLKEPLTTLPKARRQIKLYRKTCEELALLGVTESNVYLIDIDGNGRFPP-ARVKCE 112
L LP R++ T L + ES DG + V C+
Sbjct: 310 ----YLDCRPQDLP---REVL----TTNPRRLSIIAES-----IRDGLATWDNWKHVNCD 353
Query: 113 FQEDSTKTIVEHNLPDQTDVR------GIHETDFKFTIK---------YREFTQEMLSEL 157
++ + P + R + + ++++L
Sbjct: 354 KLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 158 ISHSLYCRQ--RIKYECHQAPLDLHSATWFTSAANQS-VD-YVGDVKRGSCECADMGDVA 213
+SL +Q L+L A ++S VD Y ++ + D+
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFD-SDDLIPPY 468
Query: 214 R-----WYAG---RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLA 265
+ G +++ V L+ R ++ K A A
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FR--------FL--EQKIRHDSTAWNA 516
Query: 266 EFSKLPVFERLRK-------ECPAQLSRLHIIEGDILQANLGI---KDSDLL--MLQEEV 313
S L ++L+ P ++ I + + + K +DLL L E
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 314 SVVFNGAAS 322
+F A
Sbjct: 577 EAIFEEAHK 585
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 66.7 bits (164), Expect = 1e-13
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG--I 777
C C K + + HL H HSGE+ + C C +F R D +S H RSH G
Sbjct: 8 VACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 778 KPYPCTLCVK 787
KPY C C K
Sbjct: 64 KPYICQSCGK 73
Score = 51.0 bits (123), Expect = 3e-08
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 35/98 (35%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECT 803
SG C+ C F L+RH+ SH G KPY C +C
Sbjct: 2 SSGSSGVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGL---------------- 43
Query: 804 PTFKHRAEKTSTPGPSMCKRHLAKHLKVH--ERQK-YK 838
FK + ++ H++ H K Y
Sbjct: 44 -RFKRKD-------------RMSYHVRSHDGSVGKPYI 67
Score = 46.3 bits (111), Expect = 2e-06
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS--FKCDWQDCKWQFSRSDELSRH-RRSHFG 776
+ C C + + + H+R H G + C Q C FSR D L+ H ++ H G
Sbjct: 36 YSCP--VCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHSG 91
Query: 777 IK 778
Sbjct: 92 PS 93
Score = 32.8 bits (76), Expect = 0.072
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR-HSGERS 749
+ C C K +++ HL H+++ HSG S
Sbjct: 66 YICQ--SCGKGFSRPDHLNGHIKQVHSGPSS 94
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 64.8 bits (159), Expect = 3e-13
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 719 TFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
+F C C K + + S L HL HS R + C Q C +F + ++ +H H G K
Sbjct: 1 SFDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 779 PYPCTLCVK 787
P+ C +C K
Sbjct: 57 PHKCQVCGK 65
Score = 48.2 bits (116), Expect = 2e-07
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ C C K + + S +K H H+GE+ KC Q C FS+S L H R H G
Sbjct: 30 YPCQ--YCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
Score = 42.8 bits (102), Expect = 2e-05
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 32/84 (38%)
Query: 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKH 808
SF C C F RS LS H H +PYPC C F
Sbjct: 1 SFDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPCQ-----------------YCGKRFHQ 41
Query: 809 RAEKTSTPGPSMCKRHLAKHLKVH 832
++ + KH +H
Sbjct: 42 KS-------------DMKKHTFIH 52
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 65.1 bits (160), Expect = 4e-13
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
C K +++ LK H+R H+G + +KC C + + S L++H R H +P+ C +C
Sbjct: 13 VCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 786 VK 787
Sbjct: 71 PY 72
Score = 64.0 bits (157), Expect = 8e-13
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
C A S L HLR HS ER FKC C + S +L+ H RSH G
Sbjct: 41 TCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 64.5 bits (158), Expect = 4e-13
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 736 HLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG--IKPYPCTLCVK 787
+ R HSGE+ ++C C +F++S + H + + C C
Sbjct: 2 SSGSSGRTHSGEKPYECY--ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT 53
Score = 59.5 bits (145), Expect = 2e-11
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS--FKCDWQDCKWQFSRSDELSRH-RRSHFG 776
++C C + + +K H+ + E F C C +R +L H R+ H
Sbjct: 16 YECY--ICHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVHLRKQHSY 71
Query: 777 IKPY 780
P
Sbjct: 72 SGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 63.6 bits (156), Expect = 2e-12
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C +C K + S H+ H G R + C C +F L H + H GIKP
Sbjct: 11 YPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 780 YPCTLCVK 787
Y C +C K
Sbjct: 66 YECNICAK 73
Score = 59.0 bits (144), Expect = 7e-11
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C K + HL H++ H+G + ++C+ C +F D HR K
Sbjct: 38 YGCG--VCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSF--HRHVTSCTKS 91
Query: 780 YPCTLCVK 787
Y +
Sbjct: 92 YEAAKAEQ 99
Score = 50.9 bits (123), Expect = 4e-08
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 34/98 (34%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAE 801
SG++ + C C F+ + RH H G++PY C +C K
Sbjct: 3 SGSSGDKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGK-------------- 45
Query: 802 CTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK-YK 838
FK + HL H+K+H K Y+
Sbjct: 46 ---KFKMKH-------------HLVGHMKIHTGIKPYE 67
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 63.6 bits (156), Expect = 2e-12
Identities = 30/120 (25%), Positives = 38/120 (31%), Gaps = 35/120 (29%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C C + + K +L H R H+ ER + CD C F R D L HR H KP
Sbjct: 18 FICK--FCGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 780 YPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVHERQK-YK 838
+ C EC F LA H +H +
Sbjct: 74 FKCQ-----------------ECGKGFCQSR-------------TLAVHKTLHMQTSSPT 103
Score = 61.3 bits (150), Expect = 1e-11
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C C K + + HL+ H HS E+ FKC +C F +S L+ H+ H
Sbjct: 46 YTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 780 YPCT 783
Sbjct: 102 PTAA 105
Score = 34.7 bits (81), Expect = 0.019
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 33/91 (36%)
Query: 764 SDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCPHE-----------AECTPTFKH 808
S S R K + C C + L I HE C F+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLI----HERTHTDERPYTCDICHKAFRR 57
Query: 809 RAEKTSTPGPSMCKRHLAKHLKVHERQK-YK 838
+ HL H +H ++K +K
Sbjct: 58 QD-------------HLRDHRYIHSKEKPFK 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 61.4 bits (150), Expect = 4e-12
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+C+ EC + + L+ H R H +R FKC+ C + + LS+H + G
Sbjct: 10 EKCS--ECSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 780 YPCT 783
P +
Sbjct: 66 GPSS 69
Score = 54.0 bits (131), Expect = 1e-09
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCP 797
S KC +C + S L H R H +P+ C C S L+
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK---- 55
Query: 798 HEAECTPTFKHRAEKTS 814
H K + +
Sbjct: 56 HMK------KFHGDMSG 66
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 59.5 bits (145), Expect = 6e-12
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
R F C W C +F+RSDEL RH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
R F CT+ C K + + L+ H R H+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 62.5 bits (153), Expect = 7e-12
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR---HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
F+C +C K Y + +L H R + E+ F C C+ F R EL H SH G
Sbjct: 36 FECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTG 91
Query: 777 IKPYPCTLCVK 787
PY C+ C +
Sbjct: 92 EMPYKCSSCSQ 102
Score = 59.4 bits (145), Expect = 7e-11
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS---HFG 776
+C C K + +LK H R+H+GE+ F+C C + R + L H +
Sbjct: 8 VECP--TCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRS 63
Query: 777 IKPYPCTLCVK 787
+ + C++C +
Sbjct: 64 EQVFTCSVCQE 74
Score = 51.4 bits (124), Expect = 5e-08
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCPHE 799
SG +C C +F L H R H G KP+ C C K K L HE
Sbjct: 2 SSGSSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLE----HE 55
Query: 800 AECTPTFKHRAEKTSTPGPSMC---------KRHLAKHLKVH 832
A +R+E+ C + L H+ H
Sbjct: 56 ARNC---MNRSEQ-----VFTCSVCQETFRRRMELRLHMVSH 89
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 60.3 bits (147), Expect = 7e-12
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLR--RHSGERSFKCDWQDCKWQFSRSDELSRHRRSHF 775
T++C C + Y +S+ H + + C C +F+R D ++ H +
Sbjct: 9 HTYRCK--VCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FCFKEFTRKDNMTAHVKIIH 64
Query: 776 GI 777
I
Sbjct: 65 KI 66
Score = 57.2 bits (139), Expect = 1e-10
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRS--HFGIKPYPCTLCVKK 788
GE +++C C ++ RH + +K YPC C K+
Sbjct: 3 FTKEGEHTYRCK--VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKE 49
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 61.0 bits (149), Expect = 7e-12
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS----FKCDWQDCKWQFSRSDELSRHRRSHF 775
+ C+ C K + + L H +R+ F C C F+R + ++RH +
Sbjct: 16 YACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCA 71
Query: 776 GIKPYPCTLCVK 787
G
Sbjct: 72 GPDGVEGENSGP 83
Score = 51.8 bits (125), Expect = 1e-08
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 36/101 (35%)
Query: 736 HLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH----FGIKPYPCTLCVKKSLL 791
+ R H+GE+ + C C F + L H + + F + C+
Sbjct: 2 SSGSSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS-------- 51
Query: 792 AILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
+C TF R +A+H
Sbjct: 52 ---------KCGKTFTRRN-------------TMARHADNC 70
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 61.1 bits (148), Expect = 8e-12
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRR-HSGERS---FKCDWQDCKWQ---FSRSDELSRH 770
C + ++ M L H+ H G C W++C + F +L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 771 RRSHFGIKPYPCT 783
R H G K P +
Sbjct: 82 IRVHTGEKSGPSS 94
Score = 37.3 bits (86), Expect = 0.002
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 23/87 (26%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPT 805
E + C FS EL H H G +C + EC
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------YWEECPRE 68
Query: 806 FKHRAEKTSTPGPSMCKRHLAKHLKVH 832
K K L H++VH
Sbjct: 69 GK----------SFKAKYKLVNHIRVH 85
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 59.8 bits (146), Expect = 1e-11
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
H H ++ +KCD C+ F L+ H+ H G KPY C +C
Sbjct: 3 HHHHHHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGA 53
Score = 56.3 bits (137), Expect = 2e-10
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
C + +L +H H+GE+ ++C+ C QF+R L H R H G KPY
Sbjct: 22 RCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHSGEKPY 74
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 63.2 bits (155), Expect = 2e-11
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 37/135 (27%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++ HL H R H+GE+ +KC +C FS +L+RH+R+H G KP
Sbjct: 22 YACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 780 YPCTLCVK----KSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRH 824
Y C C K ++ L H+ EC +F A H
Sbjct: 78 YKCPECGKSFSQRANLRA----HQRTHTGEKPYACPECGKSFSQLA-------------H 120
Query: 825 LAKHLKVHERQK-YK 838
L H + H +K YK
Sbjct: 121 LRAHQRTHTGEKPYK 135
Score = 62.5 bits (153), Expect = 3e-11
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 36/128 (28%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K ++ L H R H+GE+ +KC +C FS+ L H+R+H G KP
Sbjct: 50 YKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKP 105
Query: 780 YPCTLCVK----KSLLAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRH 824
Y C C K + L H+ EC +F +
Sbjct: 106 YACPECGKSFSQLAHLRA----HQRTHTGEKPYKCPECGKSFSRED-------------N 148
Query: 825 LAKHLKVH 832
L H + H
Sbjct: 149 LHTHQRTH 156
Score = 61.3 bits (150), Expect = 6e-11
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++++HL+AH R H+GE+ +KC +C FSR D L H+R+H G KP
Sbjct: 106 YACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKP 161
Query: 780 YPCTLCVK 787
Y C C K
Sbjct: 162 YKCPECGK 169
Score = 57.8 bits (141), Expect = 9e-10
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 34/113 (30%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSL 790
S A GE+ + C +C FSRSD L+ H+R+H G KPY C C K K
Sbjct: 7 SSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 791 LAILNCPHE-----------AECTPTFKHRAEKTSTPGPSMCKRHLAKHLKVH 832
L H+ EC +F RA +L H + H
Sbjct: 65 LTR----HQRTHTGEKPYKCPECGKSFSQRA-------------NLRAHQRTH 100
Score = 52.4 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K +++ +L H R H+GE+ +KC +C FSR D L+ H+R+H G K
Sbjct: 134 YKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCP--ECGKSFSRRDALNVHQRTHTGKKT 189
Score = 37.8 bits (89), Expect = 0.006
Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 32/87 (36%)
Query: 761 FSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLAILNCPHE-----------AECTPT 805
S G KPY C C K LA H+ EC +
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAE----HQRTHTGEKPYKCPECGKS 58
Query: 806 FKHRAEKTSTPGPSMCKRHLAKHLKVH 832
F + L +H + H
Sbjct: 59 FSDKK-------------DLTRHQRTH 72
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ C C K Y K SHL+AHLR H+GER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.2 bits (84), Expect = 0.001
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 745 SGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
++ C Q C + ++ L H R H G +
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 58.6 bits (143), Expect = 4e-11
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
+ R +KCD +C FS S +LS+HRR+H G KPY C C K
Sbjct: 4 GSSGRSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Score = 54.8 bits (133), Expect = 8e-10
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
++C EC K ++ S L H R H+GE+ +KCD +C F + L H R H G P
Sbjct: 19 YKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 780 Y 780
Sbjct: 75 S 75
Score = 32.0 bits (74), Expect = 0.11
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 31/76 (40%)
Query: 764 SDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKR 823
S R + Y C EC +F H +
Sbjct: 3 SGSSGRSEWQQRERRRYKCD-----------------ECGKSFSHSS------------- 32
Query: 824 HLAKHLKVHERQK-YK 838
L+KH + H +K YK
Sbjct: 33 DLSKHRRTHTGEKPYK 48
Score = 29.3 bits (67), Expect = 0.96
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFK 751
++C EC K + + SHL H R H+G
Sbjct: 47 YKCD--ECGKAFIQRSHLIGHHRVHTGSGPSS 76
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 62.4 bits (152), Expect = 1e-10
Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 86/280 (30%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTG G +G+V+ E+L + RLA+ S L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL-----------------RLADLSPL---------- 38
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANTRG 339
++ D + D++ + + + + + +E ++ + N G
Sbjct: 39 DPAGPNEECVQCD-------LADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIG 90
Query: 340 TQRLLDIALK--MKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWMDD 394
L + A + + S+ +P + L + P
Sbjct: 91 LYNLYEAARAHGQPR---IVFASSNHTIGYYPQTERLGPDVPARPDGL------------ 135
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP--VPG 450
Y +K E L Y K +VR P +
Sbjct: 136 -----------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 451 WVDSLNGPVGVLVASGKGVVRSMILNDLSTETQVFNISSN 490
W ++ ++ + V+ S+N
Sbjct: 179 WFS---------HDDFVSLIEAVFRAPVLGCPVVWGASAN 209
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 55.9 bits (136), Expect = 3e-10
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
+ C EC K +++ S L H R H+GE+ +KC +C FS++ L H+R H
Sbjct: 15 YGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGPS 70
Query: 780 Y 780
Sbjct: 71 S 71
Score = 53.2 bits (129), Expect = 2e-09
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 737 LKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK 787
HSGE+ + C +C FSRS L +H+R H G KPY C C K
Sbjct: 2 SSGSSGIHSGEKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 3e-10
Identities = 96/576 (16%), Positives = 162/576 (28%), Gaps = 216/576 (37%)
Query: 18 RLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILG------ARQYCLKEPLTTLPKARR 71
+ L ++ E K + +++ + ++ + G A + L+E TTL K +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTTLVKTKE 121
Query: 72 QIKLYRKTCEEL----------ALL-GVTESNVYLIDI---DGNGRFPPARVKCEFQEDS 117
IK Y AL V E N L+ I GN F+E
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-------FEE-- 172
Query: 118 TKTIVEHNLPDQTDVRGIHETDFKFTIKYREFTQ-------EMLSELISHSLYCRQRIKY 170
L R +++T Y E LSELI +L
Sbjct: 173 --------L------RDLYQT-------YHVLVGDLIKFSAETLSELIRTTLDAE----- 206
Query: 171 ECHQAPLDLHSATWFTSAANQ-SVDYVGDVKRGSCECADMGDVARWYAGRSVLVTGGTGF 229
+ L++ W + +N DY+ S+ +
Sbjct: 207 KVFTQGLNILE--WLENPSNTPDKDYL----------------------LSIPI------ 236
Query: 230 MGKVLLEKLLRSCPDIGKV-----YILCRAKRGLTPKARLAEFSKLPV------------ 272
SCP IG + + + G TP +
Sbjct: 237 -----------SCPLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 273 -------FERLRKEC---------------PAQLSRLHIIEGDILQANLGIKDSDLLMLQ 310
F ++ P I+E D L+ N G+ ML
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSP---ML- 339
Query: 311 EEVSVVFNGAASLKLEAELKENVAANTRG-TQRLLDIALK--------------MKKLVA 355
S+ + +++ + + N+ + ++I+L + L
Sbjct: 340 ---SI--SNLTQEQVQDYVNK---TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 356 FIHFSTAFCHPDQ-KVL--EEKLYPS----PVS-P-HDIMRAMEWMDD--ETIKQ-LTPK 403
+ + A DQ ++ E KL S PV+ P H + + I + L
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-----HLLVPASDLINKDLVKN 446
Query: 404 ILGPHPNSYTFTKRLTETLVD--EYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLN----- 456
+ + T D + IV I + PV W +
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-CI----IRLPV-KWETTTQFKATH 500
Query: 457 ----GP-----VGVLVAS---GKGVVRSMILNDLST 480
GP +GVL G G VR ++ L
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTG-VRVIVAGTLDI 535
Score = 43.9 bits (103), Expect = 3e-04
Identities = 44/250 (17%), Positives = 78/250 (31%), Gaps = 81/250 (32%)
Query: 291 EGD-ILQANLGIKDSDLLMLQE---EVSVVFNGAASLKLEAELKENVAANTRGTQRLLDI 346
D + G S L ++ +++ F G ++ +EN +A + ++D
Sbjct: 1648 RADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRI----RENYSAMIF--ETIVDG 1699
Query: 347 ALKMKKLVAFIHFSTA---FCHPDQKVLEEKL----YPSP----VSPHDIMRAMEWMDDE 395
LK +K+ I+ + F + L + P + A E + +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSE-----KGLLSATQFTQPALTLME----KAAFEDLKSK 1750
Query: 396 TIKQLTPKILGPHPNS---YT--------FT---------KR--LTETLV--DEY-KTKL 430
+ G H S Y + R + V DE ++
Sbjct: 1751 GLIPADATFAG-H--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 431 PVVIVRPSIVLPSF-QEPVPGWVDSL-------------NGPVGVLVASGKGVVRSMILN 476
++ + P V SF QE + V+ + N VA+G L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-------LR 1860
Query: 477 DLSTETQVFN 486
L T T V N
Sbjct: 1861 ALDTVTNVLN 1870
Score = 39.6 bits (92), Expect = 0.005
Identities = 70/394 (17%), Positives = 127/394 (32%), Gaps = 138/394 (35%)
Query: 234 LLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK---ECP----AQLSR 286
L +L+R+ D KV+ +GL L S P + L CP QL+
Sbjct: 194 TLSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA- 247
Query: 287 LHIIEGDILQANLGIKDSDLLMLQEEVSVVFNG--AASLKLEAELKENVA-ANTRGTQRL 343
H + + LG +L + + G A +A ++ +
Sbjct: 248 -HYV---VTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---------IAETDSW--ESF 292
Query: 344 LDIALKMKKLVAFI--HFSTAFCH--PDQKVLEEKLY-----PSPVSPHDIMRAMEWMDD 394
K ++ FI A+ + +LE+ L PSP M +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP------MLS------ 340
Query: 395 ETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLP----VVIVRPSIVLPSFQEPVPG 450
I LT + + + V++ + LP V I
Sbjct: 341 --ISNLTQEQV--------------QDYVNKTNSHLPAGKQVEI---------------- 368
Query: 451 WVDSL-NGPVGVLVASGKGVVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGKQLIY 509
SL NG ++V+ G +S+ N++ + +A + G SR I
Sbjct: 369 ---SLVNGAKNLVVS---GPPQSL---------YGLNLTLRKAKAPS-GLDQSR----I- 407
Query: 510 QYPLEAGLWYPNGQIRSNRFWHYFFVIF----TQIL-PAYLVDFIMVLIRQKTFLVRVQN 564
P + R +F + F + + +L PA D I + + ++
Sbjct: 408 ----------PFSE-RKLKFSNRFLPVASPFHSHLLVPA--SDLINKDLVKNNVSFNAKD 454
Query: 565 RIWLGMHLLEYFTTRNWDFKNKRLLALHDNISEK 598
+ + + + T + + R L +ISE+
Sbjct: 455 ---IQIPV---YDTFDG--SDLR--VLSGSISER 478
Score = 37.3 bits (86), Expect = 0.025
Identities = 61/455 (13%), Positives = 104/455 (22%), Gaps = 184/455 (40%)
Query: 3 LLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQY----- 57
L F + L N D A + D L + Y
Sbjct: 87 CLTEFEN---CY-------LEGN----DIHAL-AAKLLQENDTTLVKTKELIKNYITARI 131
Query: 58 CLKEPLTTLPK-------ARRQIKLY--------RKTC-EELALLGVTESNVY------L 95
K P +L EEL L Y L
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL----YQTYHVLVGDL 187
Query: 96 IDIDGNGRFPPARVKCEFQEDSTKTIVEHNL--------PDQTDVRGIHETDFKFTIKYR 147
I R + + L P T + D+
Sbjct: 188 IKFSAETLSELIR-----TTLDAEKVFTQGLNILEWLENPSNT-----PDKDY------- 230
Query: 148 EFTQEMLSELIS---HSLYCRQRIKYE--CHQA---PLDL-------------------- 179
+LS IS + Q Y P +L
Sbjct: 231 -----LLSIPISCPLIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 180 -HSATW--FTSAANQSVD---YVGDVKRGSCECAD-MGDVARWYAGRSVLVTGGTGF--- 229
+ +W F + +++ ++G C + + + + + G
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIG------VRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 230 M----G--KVLLEKLLRSC----PDIGKVYI--------------------LCRAKRGLT 259
M + ++ + P +V I L R
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 260 PKARL----AEFSK---------LPVFER-----LRKECPAQLSRLHIIEGDILQANLGI 301
+ L FS+ LPV L PA +I D+++ N+
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV---PAS----DLINKDLVKNNVSF 450
Query: 302 KDSDLLMLQEEVSV--VFNGAASLKLEAELKENVA 334
D+ ++ V F+G+ L + E +
Sbjct: 451 NAKDI-----QIPVYDTFDGSDLRVLSGSISERIV 480
Score = 35.8 bits (82), Expect = 0.069
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 35/120 (29%)
Query: 73 IKL--YR-KTCEELALLG-VTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIVE----- 123
+++ YR T + + SN +I I+ P RV F +++ + +VE
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAIN------PGRVAASFSQEALQYVVERVGKR 1836
Query: 124 ---------HNLPDQT-----DVRGIHE-----TDFKF-TIKYREFTQEMLSELISHSLY 163
+N+ +Q D+R + K I E + + E + L+
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 35.0 bits (80), Expect = 0.13
Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 110/287 (38%)
Query: 103 RFPPAR-----VKCEFQED---STKTIVEHNLPDQTDV-------RGIHET----DFKFT 143
A+ F++ S IV +N P + + I E F+
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 144 IKYREFTQEMLSELISHSLYCRQRIKYECHQAPLDLHSATWFTSAANQSVDY--VGDVK- 200
+ + T+++ E+ HS Y ++ L SAT FT A ++ D+K
Sbjct: 1697 VDGKLKTEKIFKEINEHS------TSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 201 RGSCECADMGDVARWYAGRSV-----LVTGGTGFMGKVLLE---KLLRSCPDIGKVYILC 252
+G +AG S+ L + M +E +++
Sbjct: 1750 KGLIPADAT------FAGHSLGEYAALASLA-DVMS---IESLVEVVF------------ 1787
Query: 253 RAKRGLT---------------------PKARLAEFSK---LPVFERLRKE--------- 279
RG+T P A FS+ V ER+ K
Sbjct: 1788 --YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 280 --CP-AQLSRLHIIEGDI--LQA------NLGIKDSDLLMLQEEVSV 315
Q + GD+ L + ++ D++ LQ+ +S+
Sbjct: 1846 YNVENQQY----VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 31.6 bits (71), Expect = 1.5
Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 66/215 (30%)
Query: 575 YFT-TRNWDFKNKRLLALHDNISEKDKQT--------F--YIANIDVNIDDYLKTIILGA 623
+F ++ + NK L + + D+ T F Y++ ++ +G
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS-------SLVEPSKVGQ 79
Query: 624 RQYCLKEPLTTLPKARRQIKFLYVLDRIGHALILFLLGSVPKLISTTGLW---Y------ 674
L LT + +L D I HAL LL + T Y
Sbjct: 80 FDQVLNLCLTEF-----ENCYLEGND-I-HALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 675 ---PNGQIRSNRFWH-------YFFVIF------------TQIL----PAYLVDFIMVLI 708
P + ++ + IF + L + D I
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS- 191
Query: 709 RQKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRR 743
+T L+R T + K + + ++ L
Sbjct: 192 -AETLSELIR----TTLDAEKVFTQGLNILEWLEN 221
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 54.0 bits (131), Expect = 9e-10
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFG 776
R+F C C + +A+ HLK H R H+ E+ + C C F+R D L RH ++ H G
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.6 bits (109), Expect = 1e-06
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVK----KSLLA 792
RSF C+ C F+R + L RH RSH KPYPC LC + + LL
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLI 47
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGER + C+ +C F R L H + HF K +
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
R + C EC K + + SHL HL+RH E+S
Sbjct: 11 RPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 31/70 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G +PY C EC F + HL +HL
Sbjct: 3 SGSSGSGERPYGCN-----------------ECGKNFGRHS-------------HLIEHL 32
Query: 830 KVHERQK-YK 838
K H R+K
Sbjct: 33 KRHFREKSSG 42
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHS---GERSFKCDWQDCKWQFSRSDELSRHRRSHF- 775
QC C + + L H R+H+ F C+ C +F + D ++ HR
Sbjct: 8 LQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHP 63
Query: 776 GIKPYPCTLCVKKS 789
+ P S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 52.0 bits (125), Expect = 8e-09
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSH---FGIKPYPCTLCVK 787
SG +C+ C + + L+ H+R H +PC C K
Sbjct: 2 SSGSSGLQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGK 46
Score = 33.5 bits (77), Expect = 0.034
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 712 TFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F C C K + K + AH +
Sbjct: 31 AETVAALRFPCE--FCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C ++C FSR+ L +H R H G KP +
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.021
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC K +++ L H R HSGE+
Sbjct: 13 YNCK--ECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.39
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G K Y C C K
Sbjct: 3 SGSSGTGEKLYNCKECGK 20
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.2 bits (126), Expect = 4e-09
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRH-RRSHFGIKPYPCTLCVK 787
+ S + + C Q C FSR D L+ H ++ H +P+ C + V
Sbjct: 2 SSGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKCDWQDCKWQFS 762
+ C C K +++ HL H+++ H+ ER KC Q S
Sbjct: 13 YICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 5e-09
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ FKC ++C F + + H+RSH G KP +
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
F+C EC K + S +H R HSGE+
Sbjct: 13 FKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.71
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 3 SGSSGSGEKPFKCEECGK 20
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 7e-09
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ S E+ +KC+ DC ++R L H+R H G K +
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 33.2 bits (77), Expect = 0.017
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C +C K Y + +L H R H GE++
Sbjct: 13 YKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 29.0 bits (66), Expect = 0.58
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S KPY C C K
Sbjct: 3 SGSSGSVEKPYKCEDCGK 20
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 57.3 bits (139), Expect = 8e-09
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 69/236 (29%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYI---LCRAKRGLTPKARLAEFSKLPV 272
A +V+V GG GF+G L+++LL + +V++ L A++
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK---------------- 71
Query: 273 FERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKL 325
+ + E I D LL LQ+E VF+ A S+
Sbjct: 72 -INV-----PDHPAVRFSETSI-------TDDALLASLQDEYDYVFHLATYHGNQSSIH- 117
Query: 326 EAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDI 385
+ + NT T +L + K+L ++ + + E+ + +
Sbjct: 118 --DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS-----IAEKTFDDAKATEE-- 168
Query: 386 MRAMEWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEY-KT-KLPVVIVRPS 438
T + + +S Y+ +K E Y K +LP V R
Sbjct: 169 ---------------TDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ 209
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ + CD C F S EL RH+R H G KP +
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.046
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C C K + + L H R H+GE+
Sbjct: 13 YVCD--YCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGSGEKPYVCDYCGK 20
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 50.8 bits (122), Expect = 9e-09
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
R +G + F+C DC FSRSD L+ HR+ H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.038
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 770 HRRSHFGIKPYPCTLCVKK 788
R GIKP+ C C +
Sbjct: 2 STRGSTGIKPFQCPDCDRS 20
Score = 31.9 bits (73), Expect = 0.042
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRH 744
++ FQC P+C + +++ HL H +RH
Sbjct: 9 IKPFQC--PDCDRSFSRSDHLALHRKRH 34
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
GER +C DC F ++ +HRR H G KP +
Sbjct: 3 SGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.076
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C+ +C KF+ + S+ H R H+GE+
Sbjct: 13 HRCS--DCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.29
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G + + C+ C K
Sbjct: 2 SSGSSGHGERGHRCSDCGK 20
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.9 bits (121), Expect = 1e-08
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
EC K S LK H+R H+ R + C C + F L++H +S K
Sbjct: 6 ECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (77), Expect = 0.012
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKK 788
+ C+ +C + + L +H R+H ++PY CT C
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFS 38
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
GE+ +KCD C +FS+S L H+R H G KP +
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C C K +++ SHL+ H R H+GE+
Sbjct: 13 YKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G K Y C +C K
Sbjct: 3 SGSSGMGEKCYKCDVCGK 20
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ F+C+ +C +F+++ L H+R H G KP +
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
FQC EC K + + SHL +H R H+GE+
Sbjct: 13 FQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.19
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KP+ C EC F + HL H
Sbjct: 2 SSGSSGSGEKPFQCE-----------------ECGKRFTQNS-------------HLHSH 31
Query: 829 LKVH 832
+VH
Sbjct: 32 QRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ FKCD C F L+RH H KP +
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
F+C C K + S L H H+ E+
Sbjct: 13 FKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.28
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KP+ C +C K
Sbjct: 3 SGSSGTGEKPFKCDICGK 20
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ +KC +C F R L+ HRR H G +P +
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ EC K + + +HL H R H+G R
Sbjct: 13 YKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 30.5 bits (70), Expect = 0.18
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C+ C K
Sbjct: 2 SSGSSGSGEKPYKCSECGK 20
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.3 bits (121), Expect = 2e-08
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC +C F + ++H+R H G +P +
Sbjct: 2 SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 32.9 bits (76), Expect = 0.023
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S H R H+G+R
Sbjct: 13 YKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 29.5 bits (67), Expect = 0.34
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYKCMECGK 20
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ FKC +C +++ L++H+R H G KP +
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K Y + HL H R H+GE+
Sbjct: 13 FKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 2 SSGSSGTGEKPFKCGECGK 20
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F C DC FS L++HRR H G KP +
Sbjct: 2 SSGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.014
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F C +C K ++ L H R H+GE+
Sbjct: 13 FDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.37
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 3 SGSSGTGEKPFDCIDCGK 20
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ F+C C F L H+R H G K P +
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+CT C K + +L H R H+GE+S
Sbjct: 13 FECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.4 bits (67), Expect = 0.39
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KP+ CT C K
Sbjct: 3 SGSSGTGQKPFECTHCGK 20
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ FKC+ +CK F++S L+ H+R H G KP +
Sbjct: 2 SSGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.023
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K + + S L H R H+GE+
Sbjct: 13 FKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.51
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G K + C C K S L +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTV 30
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ FKC +C FSR L+ H + H G KP +
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K +++ S L H + H+GE+
Sbjct: 13 FKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.40
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 2 SSGSSGTGEKPFKCVECGK 20
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGER FKC+ +C F R L+ H R H K +
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K + + SHL HLR HS E+S
Sbjct: 13 FKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 31/71 (43%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G +P+ C EC F R+ HLA H
Sbjct: 2 SSGSSGSGERPFKCN-----------------ECGKGFGRRS-------------HLAGH 31
Query: 829 LKVHERQK-YK 838
L++H R+K
Sbjct: 32 LRLHSREKSSG 42
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER ++C +C F+R L H+R H G KP +
Sbjct: 3 SGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.044
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ EC K +A+ S L H R H+GE+
Sbjct: 13 YECS--ECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.14
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G + Y C+ C K
Sbjct: 2 SSGSSGTGERHYECSECGK 20
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE ++C +C FSR +L H+R+H G KP +
Sbjct: 3 SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K +++ L +H R H+GE+
Sbjct: 13 YECH--ECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G PY C C K
Sbjct: 2 SSGSSGTGENPYECHECGK 20
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+RHRR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 34.0 bits (79), Expect = 0.010
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H R H+G +
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 29.0 bits (66), Expect = 0.57
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+G+R ++C +C F L HRRSH G KP +
Sbjct: 3 SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.012
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S L H R H+GE+
Sbjct: 13 YECI--ECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.098
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G +PY C C K
Sbjct: 2 SSGSSGTGQRPYECIECGK 20
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ +KC +C + R +L H+R H G K +
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
++C EC K Y + L H R H+GE+
Sbjct: 13 YKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 29.0 bits (66), Expect = 0.56
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGSGEKPYKCVECGK 20
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ F+C +C FS S +L+ H+R H G KP +
Sbjct: 3 SGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.027
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K ++ S L H R H+GE+
Sbjct: 13 FECA--ECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.10
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 2 SSGSSGTGEKPFECAECGK 20
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C FSR+ +LS+H++ H G KP +
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.019
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K +++ S L H + H+GE+
Sbjct: 17 ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G K Y C C K
Sbjct: 2 SSGSSGTGEKRYKCNECGK 20
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+RHR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.016
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H H+GE+
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.71
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G KPY C EC F + HLA+H
Sbjct: 3 SGSSGTGEKPYKCN-----------------ECGKVFTQNS-------------HLARHR 32
Query: 830 KVHERQK-YK 838
+H +K
Sbjct: 33 GIHTGEKPSG 42
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ FKC+ +C +F+++ +L H+R H G KP +
Sbjct: 3 SGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K + + S L +H R H+GE+
Sbjct: 13 FKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 2 SSGSSGSGEKPFKCEECGK 20
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC Q C F S L +H H G +P +
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C C K + SHL H HSGER
Sbjct: 13 YKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.9 bits (71), Expect = 0.13
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C +C K
Sbjct: 2 SSGSSGTGEKPYKCQVCGK 20
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 3e-08
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ +KC+ +C F+++ L+ H R H G KP +
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H R H+GE+
Sbjct: 13 YKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.083
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C EC F + HL H
Sbjct: 2 SSGSSGSGEKPYKCN-----------------ECGKVFTQNS-------------HLTNH 31
Query: 829 LKVH 832
++H
Sbjct: 32 WRIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C+ +C F + L+RHRR H G KP +
Sbjct: 2 SSGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC K + + SHL H R H+GE+
Sbjct: 13 YICN--ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.37
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYICNECGK 20
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ FKC +C F ++ L+ H R H G KP +
Sbjct: 2 SSGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C EC K + + HL +HLR H+GE+
Sbjct: 13 FKCK--ECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.13
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 31/71 (43%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KP+ C EC F+ HLA H
Sbjct: 2 SSGSSGSGEKPFKCK-----------------ECGKAFRQNI-------------HLASH 31
Query: 829 LKVHERQK-YK 838
L++H +K
Sbjct: 32 LRIHTGEKPSG 42
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C FS++ +L+RH+R H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.054
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K +++ S L H R H+GE+
Sbjct: 17 ECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.11
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC DC F+R L H++SH G + +
Sbjct: 3 SGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 33.6 bits (78), Expect = 0.012
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ +C K + + S L H + H+GER
Sbjct: 13 YKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.3 bits (72), Expect = 0.087
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C+ C K KS L I
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHI 30
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 55.4 bits (134), Expect = 3e-08
Identities = 52/315 (16%), Positives = 96/315 (30%), Gaps = 88/315 (27%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL----CRAKRGLTPKARLAEFSKLPVF 273
+++L+TGG GF+G L + P KV +L + L F L F
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFN-GAASLKLEAELKEN 332
+ +I DI + + + +F+ A S +
Sbjct: 69 ------------KGEVIAADINNPLDLRR-----LEKLHFDYLFHQAAVSDTTMLNQELV 111
Query: 333 VAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKV-LEEKLYPSPVSPHDIMRAMEW 391
+ N + LL+IA K I+ S+A + + K SP +
Sbjct: 112 MKTNYQAFLNLLEIARSKK--AKVIYASSAGVYGNTKAPNVVGKNESPENV--------- 160
Query: 392 MDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSF------Q 445
Y F+K + V + V +R F +
Sbjct: 161 --------------------YGFSKLCMDEFVLSHSNDNVQVGLRY------FNVYGPRE 194
Query: 446 EP-------VPGWVDSL--NGPVGVLVASG---------KGVVRSMILNDLSTETQVFNI 487
V V L G + V+++ + + ++ V+N+
Sbjct: 195 FYKEKTASMVLQLALGAMAFKEV-KLFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNV 253
Query: 488 SSNEVEAITWGEIIS 502
+ +A ++ EI+S
Sbjct: 254 GYS--QARSYNEIVS 266
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 54.6 bits (132), Expect = 3e-08
Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 77/245 (31%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+LVTG G +G + L + V + G E
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHE---VRLSDIVDLG--AAEAHEEI----------- 46
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANT 337
+ D+ D+ + L ++ + + + +E + + AN
Sbjct: 47 -----------VACDLA-------DAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 338 RGTQRLLDIA--LKMKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWM 392
G L + A L + + S+ +P ++ ++ P S
Sbjct: 88 IGAYNLYEAARNLGKPR---IVFASSNHTIGYYPRTTRIDTEVPRRPDSL---------- 134
Query: 393 DDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLPSFQEP--V 448
Y +K E L Y K + + +R P ++ +
Sbjct: 135 -------------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARMM 175
Query: 449 PGWVD 453
W+
Sbjct: 176 ATWLS 180
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G++ +KC+ +C F+++ L+RHR H G KP +
Sbjct: 2 SSGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.013
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H H+GE+
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.42
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 31/70 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G KPY C EC F + HLA+H
Sbjct: 3 SGSSGTGKKPYKCN-----------------ECGKVFTQNS-------------HLARHR 32
Query: 830 KVHERQK-YK 838
+H +K
Sbjct: 33 GIHTGEKPSG 42
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 4e-08
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER KC+ +C F +S L +H+R H G KP +
Sbjct: 3 SGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C EC K + + +HL H R H+GE+
Sbjct: 13 HKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.099
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G +P+ C C K
Sbjct: 2 SSGSSGTGERPHKCNECGK 20
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ F+C +C FS S L +H RSH P
Sbjct: 2 SSGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.9 bits (81), Expect = 0.005
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
FQC EC ++ L HLR H
Sbjct: 13 FQCK--ECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 32.6 bits (75), Expect = 0.035
Identities = 15/67 (22%), Positives = 17/67 (25%), Gaps = 30/67 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G KP+ C EC F L KHL
Sbjct: 3 SGSSGTGEKPFQCK-----------------ECGMNFSWSC-------------SLFKHL 32
Query: 830 KVHERQK 836
+ HER
Sbjct: 33 RSHERTD 39
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C +C FS L H R+H G KP +
Sbjct: 2 SSGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C+ EC K ++ S+L H+R HSGE+
Sbjct: 13 YGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.033
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C+ C K KS L I
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLII 30
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ SGE+ + C+ +C FS+ LS H+R+H G KP +
Sbjct: 2 SSGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K +++ S L AH R H+GE+
Sbjct: 17 ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C C K KS+L+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSA 30
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ F+C +C+ F+ L H+R+H G KP +
Sbjct: 2 SSGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.029
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+C+ EC K + S+L H R H+GE+
Sbjct: 13 FECS--ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KP+ C+ C K KS L +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIV 30
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + ++C+ +C FS++ +L+RH+R H G KP +
Sbjct: 2 SSGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.037
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K +++ S L H R H+GE+
Sbjct: 17 ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.52
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGGKPYQCNECGK 20
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C +C F+ L +H++ H KP +
Sbjct: 2 SSGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 32.1 bits (74), Expect = 0.047
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC K + S+L H + H+ ++
Sbjct: 13 YICA--ECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 29.0 bits (66), Expect = 0.54
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYICAECGK 20
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C +C FS++ L +H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.029
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K +++ +HL H R H+GE+
Sbjct: 13 YECK--ECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 14/64 (21%), Positives = 16/64 (25%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C EC F HL +H
Sbjct: 2 SSGSSGTGEKPYECK-----------------ECGKAFSQTT-------------HLIQH 31
Query: 829 LKVH 832
+VH
Sbjct: 32 QRVH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L RHR H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.015
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H H+GE+
Sbjct: 13 YKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 55.1 bits (132), Expect = 4e-08
Identities = 46/252 (18%), Positives = 84/252 (33%), Gaps = 50/252 (19%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIG--KVYILCRAKRGLTPKARLAEFSKLPVFERL 276
L+ G TG +G L E L + G KVY + R R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR---------------------RT 40
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAAN 336
R + ++ ++ DI + L +V+ VF + + +EN AN
Sbjct: 41 RPAWHED-NPINYVQCDISDPD---DSQAKLSPLTDVTHVF--YVTWANRSTEQENCEAN 94
Query: 337 TRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
++ + +LD + + I T K Y P + + + + E
Sbjct: 95 SKMFRNVLDAVIPNCPNLKHISLQTGR----------KHYMGPFESYGKIESHDPPYTED 144
Query: 397 IKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLN 456
+ +L + N Y + + V++ + L + RP + P + +L
Sbjct: 145 LPRL------KYMNFYYDLEDIMLEEVEKKE-GLTWSVHRPGNIF----GFSPYSMMNLV 193
Query: 457 GPVGVLVASGKG 468
G + V A K
Sbjct: 194 GTLCVYAAICKH 205
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F+++ L+ H+R H G+KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 33.6 bits (78), Expect = 0.011
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H R H+G +
Sbjct: 13 YKCN--ECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 31.0 bits (71), Expect = 0.13
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYKCNECGK 20
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE F C +C F+ L H++ H G +P +
Sbjct: 2 SSGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F C+ EC K + ++L H + H+GER
Sbjct: 13 FICS--ECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 29.0 bits (66), Expect = 0.64
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G P+ C+ C K
Sbjct: 3 SGSSGTGENPFICSECGK 20
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ + C+ C F S L++H R H +
Sbjct: 3 SGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCD 753
+ C C K + +HL HLR H+ E
Sbjct: 13 YSCN--VCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.4 bits (67), Expect = 0.35
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C +C K
Sbjct: 2 SSGSSGTGEKPYSCNVCGK 20
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + + C C FS +L H+RSH G+KP +
Sbjct: 2 SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 32.9 bits (76), Expect = 0.023
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C+ +C K ++ S L H R H+G +
Sbjct: 13 YGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 32.1 bits (74), Expect = 0.046
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G+KPY C+ C K KS L +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIV 30
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ GE+ ++C +C FS S L++H +H KP +
Sbjct: 2 SSGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 33.7 bits (78), Expect = 0.012
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+QC+ EC K ++ L H H+ E+
Sbjct: 13 YQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 28.3 bits (64), Expect = 1.2
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 31/70 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G KPY C+ EC +F L +H
Sbjct: 3 SGSSGEGEKPYQCS-----------------ECGKSFSGSY-------------RLTQHW 32
Query: 830 KVHERQK-YK 838
H R+K
Sbjct: 33 ITHTREKPSG 42
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 5e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC +C F R+ L+RH+ H G KP +
Sbjct: 2 SSGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.010
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + + SHL H H+GE+
Sbjct: 13 YKCH--ECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.097
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C EC F+ + HLA+H
Sbjct: 2 SSGSSGTGEKPYKCH-----------------ECGKVFRRNS-------------HLARH 31
Query: 829 LKVH 832
+H
Sbjct: 32 QLIH 35
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 54.6 bits (132), Expect = 5e-08
Identities = 42/234 (17%), Positives = 68/234 (29%), Gaps = 68/234 (29%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTG +G +G L+ L K I + T
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK--KNVIASDIVQRDTG-------------------- 39
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA--SLKLEAELKENVAANTR 338
+ I D+ + + + + + +F+ A S K E + N
Sbjct: 40 -----GIKFITLDVSNRDEIDR----AVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 339 GTQRLLDIALKMKKLVAFIHFST--AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
GT +L+ A K ++ + ST F P + T
Sbjct: 91 GTYNILEAA-KQHRVEKVVIPSTIGVF------------GPETPKN--------KVPSIT 129
Query: 397 IKQLTPKILGPHPNS-YTFTKRLTETLVDEYKTK--LPVVIVRPSIVLPSFQEP 447
I P + + TK E L Y K L V +R ++ EP
Sbjct: 130 I---------TRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ GE+++KC +C FS++ L H+ H G KP +
Sbjct: 2 SSGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC +++ S L+ H H GE+
Sbjct: 13 WKCR--ECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 28.3 bits (64), Expect = 1.2
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G K + C C
Sbjct: 3 SGSSGMGEKTWKCRECDM 20
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G + F+C +C F+R LS H++ H G KP +
Sbjct: 2 SSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.011
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F+CT EC K + + S L H + H+GE+
Sbjct: 13 FECT--ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 768 SRHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G K + CT C K KS L++
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSM 30
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC ++C F +L H H G KP +
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.014
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K + L H H+GE+
Sbjct: 17 ECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.59
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYKCEECGK 20
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC DC F+ L H++ H G + +
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 34.0 bits (79), Expect = 0.010
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ +C K + S L+ H + H+GER
Sbjct: 13 YKCS--DCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 29.8 bits (68), Expect = 0.33
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C+ C K KS L I
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRI 30
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ C ++ L H++ H G +P +
Sbjct: 2 SSGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 33.3 bits (77), Expect = 0.017
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C K Y +L H + H+GER
Sbjct: 17 KCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 29.0 bits (66), Expect = 0.46
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYKCEKCGK 20
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 7e-08
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ ++C +C F++ L++H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.036
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K +A+ ++L H R H+GE+
Sbjct: 13 YRCG--ECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYRCGECGK 20
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 7e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C+ +C F +L H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.043
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K + S L+ H R H+GE+
Sbjct: 17 ECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYNCEECGK 20
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C F + LSRH+R H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S+L H R H+GE+
Sbjct: 13 YKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C EC F+H + +L++H
Sbjct: 2 SSGSSGTGEKPYKCN-----------------ECGKVFRHNS-------------YLSRH 31
Query: 829 LKVH 832
++H
Sbjct: 32 QRIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KCD C F L+ H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.025
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
C K + S L H R H+GE+
Sbjct: 17 VCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.34
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C +C K
Sbjct: 3 SGSSGTGEKPYKCDVCHK 20
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-08
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +C ++C FS + +L H+R H G P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 32.1 bits (74), Expect = 0.044
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C EC K ++ S L H R H+GE
Sbjct: 13 HECR--ECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 31.7 bits (73), Expect = 0.051
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KP+ C C K
Sbjct: 2 SSGSSGTGEKPHECRECGK 20
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 48.0 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ + C ++C F + L +H+R H G KP +
Sbjct: 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.026
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K + S L H R HSGE+
Sbjct: 17 ECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYNCKECGK 20
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++CD C+ FS L++H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.036
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
C K ++ + L H R HSGE+
Sbjct: 17 VCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.19
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C +C K
Sbjct: 3 SGSSGTGEKPYECDVCRK 20
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ ++C C F++ L++H+++H G KP +
Sbjct: 2 SSGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C C K + + +HL H + H+GE+
Sbjct: 13 YECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.095
Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C C+ F +A HLA+H
Sbjct: 2 SSGSSGTGEKPYECK-----------------VCSKAFTQKA-------------HLAQH 31
Query: 829 LKVH 832
K H
Sbjct: 32 QKTH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ +KC+ +C F L+ H+ H G KP +
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.028
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S+L H H+GE+
Sbjct: 13 YKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.60
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGEKPYKCNECGK 20
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.6 bits (114), Expect = 1e-07
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +GE+ KC +C F +L H+R+H K +
Sbjct: 2 SSGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+CT EC K + S L H R H ++
Sbjct: 13 CKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.1 bits (66), Expect = 0.55
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KP CT C K KS L +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIM 30
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GER + C C F+ L +H++ H G KP
Sbjct: 2 SSGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.058
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ CT C K + S+L H + H+GE+
Sbjct: 13 YICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.095
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G +PY CT+C K
Sbjct: 2 SSGSSGTGERPYICTVCGK 20
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +G + + C+ +C FS L+ H+ H G KP
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.048
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K ++ S L H H+GE+
Sbjct: 17 ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.094
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G+KPY C C K
Sbjct: 2 SSGSSGTGVKPYMCNECGK 20
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C C F++ +L H++ H G KP +
Sbjct: 3 SGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.036
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
C K + K S L H + H+GE+
Sbjct: 17 ICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C++C K KS L +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHV 30
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ SG++ ++C +C+ F + L++H+R H G +
Sbjct: 2 SSGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + ++ HL H R H+GERS
Sbjct: 13 YECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 29.0 bits (66), Expect = 0.56
Identities = 15/64 (23%), Positives = 17/64 (26%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G KPY C EC TF HL +H
Sbjct: 2 SSGSSGSGKKPYECK-----------------ECRKTFIQIG-------------HLNQH 31
Query: 829 LKVH 832
+VH
Sbjct: 32 KRVH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.2 bits (112), Expect = 2e-07
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLC 785
+ C+ C F L+RH+ SH G KPY
Sbjct: 5 SSGRTRKQVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.6 bits (87), Expect = 6e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C C K + + HL H HSGE+ +
Sbjct: 11 KQVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSS 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GER ++C +C F + LS H+R H G KP +
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.024
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ EC K + + S L H R H GE+
Sbjct: 13 YECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G + Y C+ C K KS L++
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSM 30
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 52.8 bits (127), Expect = 2e-07
Identities = 39/240 (16%), Positives = 73/240 (30%), Gaps = 67/240 (27%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G G +G+ L ++L+ K G + + + + + E
Sbjct: 17 IAIIGAAGMVGRKLTQRLV---------------KDGSLGGKPVEK---FTLIDVFQPEA 58
Query: 281 PAQLS-RLHIIEGDILQANLGIKDSDLL--MLQEEVSVVFNGAASLKLEAELKENVAA-- 335
PA S + D+ +++ V+F+ AA + EAEL +
Sbjct: 59 PAGFSGAVDARAADLS-------APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRI 111
Query: 336 NTRGTQRLLDIA----LKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
N GT+ L D K + S+ F P P P+ +
Sbjct: 112 NLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL---------PYPIPDEFHTTPL 162
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVRPSIVLPSFQEP 447
SY K + E L+ +Y + + +R + +P
Sbjct: 163 --------------------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKP 202
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C C FS LS H+R H G KP +
Sbjct: 3 SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 31.7 bits (73), Expect = 0.054
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
C K ++ L H R HSG++
Sbjct: 17 VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 30.9 bits (71), Expect = 0.13
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C++C K
Sbjct: 2 SSGSSGTGEKPYECSVCGK 20
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ +KC+ C +F + L H H G P
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 34.0 bits (79), Expect = 0.007
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
++C C + +++HL+AH+ H+G
Sbjct: 12 YKCE--TCGARFVQVAHLRAHVLIHTGSG 38
Score = 27.9 bits (63), Expect = 1.1
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C
Sbjct: 2 SSGSSGGEKPYKCETCGA 19
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 47.2 bits (113), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ ++CD C FS+ L H R H G P
Sbjct: 1 GSSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGGEKPYRCDQCGK 19
Score = 28.7 bits (65), Expect = 0.60
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
++C +C K +++ L H+R H+G
Sbjct: 12 YRCD--QCGKAFSQKGSLIVHIRVHTGSG 38
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C DC F + +L H+R H G P
Sbjct: 2 SSGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 32.1 bits (74), Expect = 0.042
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C K + K S L H R H+GE
Sbjct: 17 DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C+ C K KS L +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHV 30
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+ F C C+ FS L H+++H KP +
Sbjct: 5 SSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
F C+ C K ++ S+L H + H+ E+
Sbjct: 11 FGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C+ +C+ F+ L H+R+H G
Sbjct: 2 SSGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.017
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K + S+L H R H+GE
Sbjct: 17 ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.23
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C C K KS L +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMV 30
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
SGE ++C +C F+R D+L H+R+H G
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.0 bits (79), Expect = 0.008
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C+ EC K + + L +H R H+GE
Sbjct: 11 YECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ +KC+ +C F L+ H+ +H G KP +
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.027
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
EC K + S L H HSGE+
Sbjct: 17 ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C C K +S LAI
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAI 30
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS-HFGIKPYPCT 783
+ +G++ ++C +C F ++ L RH R H G KP +
Sbjct: 2 SSGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.4 bits (72), Expect = 0.087
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR-HSGERSFKC 752
++C EC K + + + L H R H+GE+
Sbjct: 13 YECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 29.5 bits (67), Expect = 0.43
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 3 SGSSGTGKKPYECIECGK 20
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+GE+ ++C+ C FS L+ H+ H G KP +
Sbjct: 3 SGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.1 bits (74), Expect = 0.049
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C K ++ S L H H+G++
Sbjct: 17 QCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYECNQCGK 20
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-07
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE+ ++C +C F+ L H++ H G KP
Sbjct: 2 SSGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.037
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S+L H + H+GE+
Sbjct: 13 YRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.48
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 769 RHRRSHFGIKPYPCTLCVK 787
S G KPY C C K
Sbjct: 2 SSGSSGTGEKPYRCAECGK 20
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE+ + C+ C +F L H R H G P
Sbjct: 1 GSSGSSGGEKPYPCE--ICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.4 bits (80), Expect = 0.007
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ C C + + LK+HLR H+G
Sbjct: 12 YPCE--ICGTRFRHLQTLKSHLRIHTGSG 38
Score = 29.4 bits (67), Expect = 0.36
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G KPYPC +C
Sbjct: 2 SSGSSGGEKPYPCEICGT 19
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
+ +G +KC C+ FS L H+R H KP +
Sbjct: 2 SSGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKC 752
+C K ++ L H R H+ E+
Sbjct: 17 QCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.50
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 31/70 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G+ PY C+ +C +F + L H
Sbjct: 3 SGSSGAGVNPYKCS-----------------QCEKSFSGKL-------------RLLVHQ 32
Query: 830 KVHERQK-YK 838
++H R+K
Sbjct: 33 RMHTREKPSG 42
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 50.5 bits (121), Expect = 5e-07
Identities = 27/227 (11%), Positives = 64/227 (28%), Gaps = 71/227 (31%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+++ G +GF+G LL + L RG A R ++
Sbjct: 7 IVLIGASGFVGSALLNEALN---------------RGFEVTA----------VVRHPEKI 41
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
+ L + + D+ + ++ + + V + ++ +
Sbjct: 42 KIENEHLKVKKADVSSLD------EVCEVCKGADAVISAFNPGWNNPDI---YDETIKVY 92
Query: 341 QRLLDIALKMKKLVAFIHFSTA---FCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
++D +K + F+ A F P ++++ P
Sbjct: 93 LTIID-GVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVP-------------------- 131
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVLP 442
N K L E ++ + ++ V P+ +
Sbjct: 132 -----------ENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMR 167
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 48.2 bits (114), Expect = 5e-07
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRS--HFGIKPYPCTLCVKKS 789
S K + +G F+C C + EL+ H H+ + K
Sbjct: 5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Score = 39.7 bits (92), Expect = 5e-04
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRR--HSGERSFKCDW-QDCKWQFSRSDELSRHRRSHFG 776
F+C +C Y + L H+ H + + + D +W R L
Sbjct: 20 FRCK--DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 777 IKPYPCTLC 785
K C C
Sbjct: 78 QKVLKCMYC 86
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.6 bits (109), Expect = 7e-07
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +GE ++C +C FSR D+L H+++H G
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 31.3 bits (72), Expect = 0.073
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K +++ L +H + HSG+
Sbjct: 13 YECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 27.8 bits (63), Expect = 1.2
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 770 HRRSHFGIKPYPCTLCVK 787
S G PY C C K
Sbjct: 3 SGSSGTGENPYECCECGK 20
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 45.0 bits (106), Expect = 8e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSH 774
+R + CD C F R+ +L RH++SH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 29.6 bits (66), Expect = 0.30
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS 745
R + C +P C K + + L H + H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 8e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
S +S +C +C F+ L++H+R H G KP +
Sbjct: 3 SGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.022
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
QC EC + + SHL H R H+GE+
Sbjct: 13 HQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.55
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 30/64 (46%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S K + C EC F ++ HL +H
Sbjct: 2 SSGSSGSSTKSHQCH-----------------ECGRGFTLKS-------------HLNQH 31
Query: 829 LKVH 832
++H
Sbjct: 32 QRIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ SGE+ ++C+ +C F L H R+H G+
Sbjct: 2 SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.5 bits (75), Expect = 0.027
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G KPY C C K KSLL +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIV 30
Score = 31.3 bits (72), Expect = 0.081
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
++C EC K + S L H R H+G
Sbjct: 13 YECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +G + + C+ +C F L H R+H G
Sbjct: 2 SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.013
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC K + S+L H R H+GE
Sbjct: 13 YVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.062
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 769 RHRRSHFGIKPYPCTLCVK----KSLLAI 793
S G+KPY C C K KS L I
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLII 30
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCT 783
SGE+S CD +C F L H+R H G K +
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 29.9 bits (68), Expect = 0.28
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 726 ECLKFYAKMSHLKAHLRRHSGERSFKCD 753
EC K + +S L+ H R H GE+
Sbjct: 17 ECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 26.8 bits (60), Expect = 3.2
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 770 HRRSHFGIKPYPCTLCVK----KSLLAI 793
S G K + C C K S L I
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRI 30
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 49.1 bits (118), Expect = 2e-06
Identities = 40/231 (17%), Positives = 64/231 (27%), Gaps = 87/231 (37%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+ VTGGTGF+G+ ++E + G IL R+ E+
Sbjct: 5 IAVTGGTGFLGQYVVESIKND----GNTPIILTRSIGN--KAINDYEY------------ 46
Query: 280 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENV 333
D DL+ +V V + AA +
Sbjct: 47 ----------RVSDY-------TLEDLINQLNDVDAVVHLAATRGSQGKI-------SEF 82
Query: 334 AANTRGTQRLLDIALK--MKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSPHDIMRAM 389
N TQ L D + + ++ ST + D+ L EK P P
Sbjct: 83 HDNEILTQNLYDACYENNISN---IVYASTISAYSDETSLPWNEKELPLPDLM------- 132
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVRPS 438
Y +K E + + Y L + +R +
Sbjct: 133 ----------------------YGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 44.3 bits (104), Expect = 4e-06
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPCTLCVKKSLLAIL 794
+ H G+RS KC C F R LSR K C C K S
Sbjct: 4 GSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAA 54
Query: 795 NCPHEAECTPTFKHRAEKTSTP 816
E +KTS P
Sbjct: 55 LNKDEG------NESGKKTSGP 70
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 27/83 (32%)
Query: 763 RSDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCK 822
S + ++ H G + C+ +C F R+ + MC+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCS-----------------KCGIIFIRRSTLSRRK-TPMCE 43
Query: 823 R---------HLAKHLKVHERQK 836
+ L K +K
Sbjct: 44 KCRKDSCQEAALNKDEGNESGKK 66
Score = 27.7 bits (61), Expect = 3.0
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSF 750
+T C +C K + + L SG+++
Sbjct: 38 KTPMCE--KCRKDSCQEAALNKDEGNESGKKTS 68
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.8 bits (99), Expect = 2e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 740 HLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
+ +S+ C +C F+R L+RH++ H
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC K + ++ HL H + H+ +
Sbjct: 13 YNCN--ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 28.7 bits (65), Expect = 0.60
Identities = 13/67 (19%), Positives = 16/67 (23%), Gaps = 30/67 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S K Y C EC F HL +H
Sbjct: 3 SGSSGTDSKSYNCN-----------------ECGKAFTRIF-------------HLTRHQ 32
Query: 830 KVHERQK 836
K+H R+
Sbjct: 33 KIHTRKS 39
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 46.0 bits (109), Expect = 2e-05
Identities = 52/297 (17%), Positives = 86/297 (28%), Gaps = 90/297 (30%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+SV + G +G G+VLL+++L KV ++ R K +A
Sbjct: 19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEA---------------- 61
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
++ D K D + V F + + +A + V +
Sbjct: 62 -----YKNVNQEVVDFE------KLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRD 110
Query: 339 GTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIK 398
+ ++A K F S+
Sbjct: 111 YVLKSAELA-KAGGCKHFNLLSS------------------------------------- 132
Query: 399 QLTPKILGPHPNSYTF---TKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPG--WVD 453
G +S K E V+E K + RP ++L QE PG V
Sbjct: 133 ------KGADKSSNFLYLQVKGEVEAKVEELKFD-RYSVFRPGVLLCDRQESRPGEWLVR 185
Query: 454 SLNGPVGVLVASGKG-----VVRSMILNDLSTETQVFNISSNEVEAITWGEIISRGK 505
G + ASG VVR+M+ N + + + + I GK
Sbjct: 186 KFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMEL-------LENKAIHDLGK 235
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 46.6 bits (111), Expect = 2e-05
Identities = 44/230 (19%), Positives = 71/230 (30%), Gaps = 70/230 (30%)
Query: 221 VLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFE 274
VL+ G GF+G L E+LLR DIG ++ F P
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------------SDAISRFLNHP--- 45
Query: 275 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---E 331
H +EGDI + I+ ++ VV A +
Sbjct: 46 -----------HFHFVEGDISIHSEWIEY-----HVKKCDVVLPLVAIATPIEYTRNPLR 89
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
+ R++ +K +K I ST+ + K +E V P + R
Sbjct: 90 VFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRW- 146
Query: 390 EWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRP 437
Y+ +K+L + ++ Y K L + RP
Sbjct: 147 ---------------------IYSVSKQLLDRVIWAYGEKEGLQFTLFRP 175
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+ +GE FKC C F++ + L +H R+H
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHAR 37
Score = 33.3 bits (76), Expect = 0.015
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERS 749
F+C+ +C + + + ++L H R H+ +
Sbjct: 13 FKCS--KCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 30/68 (44%)
Query: 769 RHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKH 828
S G P+ C+ +C F R +L +H
Sbjct: 2 SSGSSGAGENPFKCS-----------------KCDRVFTQRN-------------YLVQH 31
Query: 829 LKVHERQK 836
+ H R+
Sbjct: 32 ERTHARKS 39
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 45.5 bits (108), Expect = 5e-05
Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 83/240 (34%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKL 270
+ VL+ G GF+G L +++L + D+ RL + K
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ--------------TDRLGDLVKH 68
Query: 271 PVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK 330
R+H EGDI ++ ++ V+ A +K
Sbjct: 69 E--------------RMHFFEGDITINKEWVEY-----HVKKCDVILPLVAIATPATYVK 109
Query: 331 ---ENVAANTRGTQRLLDIALKMKKLVAFIHFST---------AFCHPDQKVLEEKLYPS 378
+ ++ A+K K + ST PD L
Sbjct: 110 QPLRVFELDFEANLPIVRSAVKYGK--HLVFPSTSEVYGMCADEQFDPD----ASALTYG 163
Query: 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLV-DEYKTKLPVVIVRP 437
P++ R Y +K+L + ++ L + RP
Sbjct: 164 PINK---PRW----------------------IYACSKQLMDRVIWGYGMEGLNFTLFRP 198
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.9 bits (94), Expect = 7e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 742 RRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
SG+R ++C Q+C F + L+ H R H G P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 28.3 bits (64), Expect = 0.96
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
++C EC K + + L H R H+G
Sbjct: 11 YECQ--ECGKSFRQKGSLTLHERIHTGSG 37
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 40.0 bits (94), Expect = 7e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPYPC 782
SGE+ + C +CK FS ++ L +H++ H
Sbjct: 5 SSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.1 bits (71), Expect = 0.090
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFKC 752
+ C EC + ++ + L H + H+ +
Sbjct: 11 YSCA--ECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/61 (21%), Positives = 15/61 (24%), Gaps = 30/61 (49%)
Query: 772 RSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHLKV 831
G KPY C EC TF L +H K+
Sbjct: 3 SGSSGEKPYSCA-----------------ECKETFSDNN-------------RLVQHQKM 32
Query: 832 H 832
H
Sbjct: 33 H 33
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 45.1 bits (107), Expect = 7e-05
Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 39/241 (16%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
V+V GG G+ G L + ++ V L R + +R+ +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLT-PIASIHDRISRWK 72
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAA------SLKLEAELKE 331
+ + GDI D + L E V + S+ +
Sbjct: 73 ALTGKSIELYVGDIC-------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVY 125
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFSTA--FCHPDQKVLEEKLYPSPVSPHDIMRAM 389
N GT +L + + + T + P+ + E + ++
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYI---TITH------- 175
Query: 390 EWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEYKT--KLPVVIVRPSIVLPSFQE 446
+ T PK +S Y +K + + + +V +
Sbjct: 176 ---NGRTDTLPYPK----QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD 228
Query: 447 P 447
Sbjct: 229 E 229
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 45.1 bits (107), Expect = 8e-05
Identities = 36/257 (14%), Positives = 71/257 (27%), Gaps = 83/257 (32%)
Query: 208 DMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL--- 264
+ ++ + LV GG G S IG+ + + P+ +L
Sbjct: 25 NEKELQSVVSQSRFLVLGGAG------------S---IGQA--VTKEIFKRNPQ-KLHVV 66
Query: 265 --AEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA- 321
+E + + + +R DI + + V N +A
Sbjct: 67 DISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEY----DAFIKADGQYDYVLNLSAL 122
Query: 322 ----SLKLEAELKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYP 377
S K L + N T + + ++ + ST D+
Sbjct: 123 KHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST-----DKAA------- 169
Query: 378 SPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVR- 436
+PV+ +M A +KR+ E + ++ + R
Sbjct: 170 NPVN---MMGA--------------------------SKRIMEMFLMRKSEEIAISTARF 200
Query: 437 -------PSIVLPSFQE 446
S +L F +
Sbjct: 201 ANVAFSDGS-LLHGFNQ 216
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 739 AHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGIKPY 780
GE + C C F++ L+ H+RS P
Sbjct: 1 GSSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 29.6 bits (67), Expect = 0.36
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ C +C K + + L H R S
Sbjct: 12 YLCG--QCGKSFTQRGSLAVHQRSCSQSG 38
Score = 29.2 bits (66), Expect = 0.50
Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 30/67 (44%)
Query: 770 HRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKRHLAKHL 829
S G PY C C K +F R LA H
Sbjct: 2 SSGSSGGETPYLCGQCGK-----------------SFTQRG-------------SLAVHQ 31
Query: 830 KVHERQK 836
+ +
Sbjct: 32 RSCSQSG 38
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 43.8 bits (104), Expect = 2e-04
Identities = 57/296 (19%), Positives = 84/296 (28%), Gaps = 95/296 (32%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFERL 276
V +TG G +G + E LL G KV +R E L
Sbjct: 24 VFITGICGQIGSHIAELLLER----GDKVVGIDNFATGRR-----------------EHL 62
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDL---LMLQEEVSVVFNGAASLKLEAELKENV 333
L +EG I D L L+ + V + AAS K + +
Sbjct: 63 -----KDHPNLTFVEGSI-------ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT 110
Query: 334 AANTRGTQRLLDIALKM--KKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRA 388
N G ++ A K + F++F TA C P Q PV
Sbjct: 111 LTNCVGGSNVVQAAKKNNVGR---FVYFQTALCYGVKPIQ---------QPVRLDHPRN- 157
Query: 389 MEWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEP 447
NS Y +K E ++ L V R + V+
Sbjct: 158 -------------------PANSSYAISKSANEDYLEYS--GLDFVTFRLANVVGPRNVS 196
Query: 448 --VPGWVDS-LNG---PVG------VLVASGKGVVRSMILNDLSTETQVFNISSNE 491
+P + G V V V K + R+ + ++ SS
Sbjct: 197 GPLPIFFQRLSEGKKCFVTKARRDFVFV---KDLARATVRAVDGVGHGAYHFSSGT 249
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 38.7 bits (90), Expect = 2e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+TF+C +P C K + + ++++H++ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.1 bits (65), Expect = 0.51
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
+++F+C + C F R + H ++H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 42.9 bits (102), Expect = 2e-04
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 47/174 (27%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFER 275
+L+TGG G +G L+E L G ++ + KR + P
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ----GHEILVIDNFATGKREVLPPVAGLSV-------- 69
Query: 276 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAELKEN 332
IEG + D+ LL + + V + AA+ K + E+
Sbjct: 70 --------------IEGSVT-------DAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED 108
Query: 333 VAANTRGTQRLLDIALKM--KKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVSP 382
A N +G+ + A K K+ ++F TA C P + +P +
Sbjct: 109 AATNVQGSINVAKAASKAGVKR---LLNFQTALCYGRPATVPIPIDSPTAPFTS 159
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK 261
+ VL+ G TG G+ LL+++L P + KV R P+
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPR 47
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 43.0 bits (102), Expect = 3e-04
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 47/154 (30%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR--AKRGLTPKARLAEFSKLPVF 273
+++L+TGGTG GK + K+L + + K+ + R K+
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQ----------------- 60
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLGIKDSD-LLMLQEEVSVVFNGAASLK-------- 324
+ E R+ GD ++D + L E V + + AA+LK
Sbjct: 61 SEMAMEFND--PRMRFFIGD-------VRDLERLNYALEGVDICIH-AAALKHVPIAEYN 110
Query: 325 -LEAELKENVAANTRGTQRLLDIAL--KMKKLVA 355
LE +K N+ G +++ L + +++A
Sbjct: 111 PLEC-IKTNIM----GASNVINACLKNAISQVIA 139
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.4 bits (88), Expect = 3e-04
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHFG 776
SGE+ + C C +F R D +S H RSH G
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDG 35
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 41.5 bits (98), Expect = 4e-04
Identities = 41/238 (17%), Positives = 66/238 (27%), Gaps = 82/238 (34%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G TG +GK LL+ L A A RK
Sbjct: 3 IFIVGSTGRVGKSLLKSLS---------------TTDYQIYA-GA-----------RK-- 33
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGA----ASLKLEAELKENVAAN 336
Q+ + N+ D+ EE++ +G + V +
Sbjct: 34 VEQVPQY---------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKV--D 82
Query: 337 TRGTQRLLDIALKMKKLVA-FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDE 395
G +L+ A K + V FI ST F +K + D A + D
Sbjct: 83 LYGAVKLMQAAEKAE--VKRFILLSTIFSLQPEKWIGAGFDA----LKDYYIAKHFADLY 136
Query: 396 TIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVD 453
K+ T L I++P + +E G +D
Sbjct: 137 LTKE----------------------------TNLDYTIIQPGAL---TEEEATGLID 163
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 41.5 bits (97), Expect = 6e-04
Identities = 27/178 (15%), Positives = 44/178 (24%), Gaps = 43/178 (24%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G TG G +LE+ RG A R +
Sbjct: 3 IGIIGATGRAGSRILEEAKN---------------RGHEVTA----------IVRNAGKI 37
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
++I++ DI D L L ++ VV S + +
Sbjct: 38 TQTHKDINILQKDIF-------DLTLSDLSDQNVVVDAYGIS-------PDEAEKHVTSL 83
Query: 341 QRLLDIALKMKKLVAFIHFSTAFC---HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDE 395
L+ L + A D L E + RA +
Sbjct: 84 DHLIS-VLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEH 140
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/174 (12%), Positives = 42/174 (24%), Gaps = 41/174 (23%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+ + G G + + L LL D+ + + R +
Sbjct: 8 ITILGAAGQIAQXLTATLLTY-TDM-HITLYGRQL------------------KTRIPPE 47
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
R+ +IEG L VVF +
Sbjct: 48 IIDHERVTVIEGSFQNPG------XLEQAVTNAEVVFV-------------GAMESGSDM 88
Query: 341 QRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDD 394
++ + + I S A + V EK + P ++ +
Sbjct: 89 ASIVKALSR-XNIRRVIGVSMAGLSGEFPVALEKWTFDNL-PISYVQGERQARN 140
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 41.0 bits (97), Expect = 0.001
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 58/177 (32%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYI---LCRAKRG-LTPKARLAEFSKLPVFERL 276
++VTGG GF+G +++KL S ++ + L + ARL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSES----NEIVVIDNLSSGNEEFVNEAARL------------ 47
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVA-- 334
++ D+ D+ + V++ AA+ +++
Sbjct: 48 -------------VKADLA-------ADDIKDYLKGAEEVWHIAAN----PDVRIGAENP 83
Query: 335 -----ANTRGTQRLLDIALKM--KKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVSP 382
N T RLL+ K + + ST+ E P+S
Sbjct: 84 DEIYRNNVLATYRLLEAMRKAGVSR---IVFTSTSTVYGEAKVIPTPEDYPTHPISL 137
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 725 PECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
P CL ++ LK H+R E + C CK +F+ +D H
Sbjct: 78 PLCLMPFSSSVSLKQHIRYT--EHTKVC--PVCKKEFTSTDSALDHVCKK 123
Score = 33.8 bits (76), Expect = 0.071
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Query: 710 QKTFENLVRTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSR 769
+ ++ + + + + H +R + + DE S
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62
Query: 770 --HRRSHFGIKPYPCTLCVK 787
+ I + C LC+
Sbjct: 63 LYRLLASKAISQFVCPLCLM 82
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
R+F C C + +A+ HLK H R H+ E+
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.1 bits (76), Expect = 0.012
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 748 RSFKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
RSF C+ C F+R + L RH RSH K
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 40.3 bits (95), Expect = 0.002
Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 45/179 (25%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFE 274
+ L+TG GF+G LLE LL+ KV + L E L +
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKL----DQKVVGLDNFATGHQ-----RNLDEVRSLVSEK 78
Query: 275 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEA 327
Q S I+GDI + D V V + AA S+
Sbjct: 79 --------QWSNFKFIQGDIR-------NLDDCNNACAGVDYVLHQAALGSVPRSIN--- 120
Query: 328 ELKENVAANTRGTQRLLDIA--LKMKKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSP 382
+ + A N G +L A K++ F + +++ + D L E P+SP
Sbjct: 121 DPITSNATNIDGFLNMLIAARDAKVQS---FTYAASSSTYGDHPGLPKVEDTIGKPLSP 176
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 39.6 bits (93), Expect = 0.002
Identities = 46/290 (15%), Positives = 79/290 (27%), Gaps = 104/290 (35%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VLV G G + + LL +L +G P A + R
Sbjct: 24 VLVVGANGKVARYLLSELK---------------NKGHEPVA-MV-----------RN-- 54
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGA--------ASLKLEAELKEN 332
Q L G D + L+E+ S F + A+
Sbjct: 55 EEQGPELR---------ERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTIL 105
Query: 333 VAANTRGTQRLLDIALKM--KKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAME 390
+ + G + + A K K+ FI S+ + P++ + A
Sbjct: 106 I--DLWGAIKTIQEAEKRGIKR---FIMVSSVGTVDPDQG--------PMNMRHYLVA-- 150
Query: 391 WMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPG 450
KRL + + + L IVRP + E G
Sbjct: 151 -------------------------KRLADDELKR--SSLDYTIVRPGPL---SNEESTG 180
Query: 451 WV------DSLNGPVGV-LVASGKGVVRSMILNDLSTETQVFNISSNEVE 493
V + + VA K + ++ T + F + + +
Sbjct: 181 KVTVSPHFSEITRSITRHDVA--KVIAEL--VDQQHTIGKTFEVLNGDTP 226
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 34/178 (19%)
Query: 216 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFE 274
+ G+ V VTG TGF G L L +G V LT + F
Sbjct: 7 WQGKRVFVTGHTGFKGGWLSLWLQT----MGATVKGY-----SLTAPTVPSLFETA---- 53
Query: 275 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAA-SLKLEA--E 328
R+ + GD I+D + L + + + +VF+ AA L + E
Sbjct: 54 RVAD-------GMQSEIGD-------IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSE 99
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
E + N GT LL+ + + A ++ ++ C+ +++ + + +D
Sbjct: 100 PVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPY 157
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 39.2 bits (92), Expect = 0.004
Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 61/225 (27%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERL 276
GR ++VTGG GF+G +++ L I + ++ K G T L + +
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDG-TKFVNLVDLNI------- 94
Query: 277 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVF-NGAASLKLEAELKENVAA 335
++ + D L + ++ +V +F GA S E + K +
Sbjct: 95 ---------ADYMDKEDFLIQIMAGEEF------GDVEAIFHEGACSSTTEWDGKYMMDN 139
Query: 336 NTRGTQRLLDIALKMKKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVSPHDIMRAMEWMD 393
N + ++ LL L+ + + F++ S+A +E + Y P++
Sbjct: 140 NYQYSKELLHYCLERE--IPFLYASSAATYGGRTSDFIESREYEKPLNV----------- 186
Query: 394 DETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVR 436
+ ++K L + V + + +V R
Sbjct: 187 ------------------FGYSKFLFDEYVRQILPEANSQIVGFR 213
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 39.1 bits (92), Expect = 0.004
Identities = 59/391 (15%), Positives = 103/391 (26%), Gaps = 169/391 (43%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYIL------CRAKRGLTPKARLAEFSKLPVF 273
+L+TGG GF+G L L+ S G +V +L +F + PV
Sbjct: 10 ILITGGAGFIGGHLARALVAS----GEEVTVLDDLRVPPMIP-----PEGTGKFLEKPVL 60
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEA 327
E + E D+ +V +V++ A+ S K
Sbjct: 61 E--------------LEERDL----------------SDVRLVYHLASHKSVPRSFKQPL 90
Query: 328 ELKENVAANTRGTQRLLDIALKM--KKLVAFIHFSTAFCHPDQKVL--EEKLYPSPVSPH 383
+ +NV + LL + + K + ST + L E SP SP
Sbjct: 91 DYLDNV----DSGRHLLALCTSVGVPK---VVVGSTCEVYGQADTLPTPEDSPLSPRSP- 142
Query: 384 DIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIV------ 435
Y +K E + ++ P V +
Sbjct: 143 ----------------------------YAASKVGLEMVAGAHQRASVAPEVGIVRFFNV 174
Query: 436 -----RPSIVLPSFQEPVPGWVDS-LNG-PVGVLVASGKG-----------VVRSMILND 477
RP ++P + L + V G G VV ++
Sbjct: 175 YGPGERPDALVPRL-------CANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALA 224
Query: 478 LSTETQVFNISSNE-------VEAI---------------------TWGEIISRGKQLIY 509
V N S + + + + + +Q+
Sbjct: 225 NRPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGE 284
Query: 510 ---QYPLEAGL-----WYPNGQIRSNRFWHY 532
+E G+ W+ +S
Sbjct: 285 RSGGIGIEEGIRLTLEWW-----QSRDLDDI 310
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 39.0 bits (92), Expect = 0.005
Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 67/195 (34%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRG-LTPKARLAEFSKLPVFER 275
VLVTGG GF+G ++E LL G +V + L KR +
Sbjct: 3 VLVTGGAGFIGSHIVEDLLAR----GLEVAVLDNLATGKRENVPKGVPF----------- 47
Query: 276 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAELKEN 332
D+ D + + + + V + AA A +K +
Sbjct: 48 --------------FRVDLR-------DKEGVERAFREFRPTHVSHQAAQ----ASVKVS 82
Query: 333 VA-------ANTRGTQRLLDIALK--MKKLVAFIHFSTAFC-----HPDQKVLEEKLYPS 378
V N G LL+ + ++KLV F++ P+ + EE P
Sbjct: 83 VEDPVLDFEVNLLGGLNLLEACRQYGVEKLV----FASTGGAIYGEVPEGERAEETWPPR 138
Query: 379 PVSPHDIM-RAMEWM 392
P SP+ A E
Sbjct: 139 PKSPYAASKAAFEHY 153
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (78), Expect = 0.007
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 744 HSGERSFKCDWQDCKWQFSRSDELSRHRRSHF-GIKPYPCT 783
E+ FKC+ C+ FS S L++H R H G+K P +
Sbjct: 7 GQKEKCFKCN--KCEKTFSCSKYLTQHERIHTRGVKSGPSS 45
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 38.3 bits (89), Expect = 0.007
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
+L+ G TG++G+ + + L ++L R + +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQLLESF-------- 53
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 338
+ S +I+ G I + L+ + V VV + SL++E+++ A
Sbjct: 54 ----KASGANIVHGSIDDH------ASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV 103
Query: 339 GTQR 342
GT +
Sbjct: 104 GTVK 107
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET:
NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Length = 269
Score = 37.4 bits (87), Expect = 0.014
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 32 QTFYIANIDVNIDDYLKTI--ILGARQYCLKEPLTTLPKARRQIKLYRKTCEELALLGVT 89
Q + ++ + L +I + + LK+ T+ C ++ L G
Sbjct: 1 QNKELCDVT-SSTGLLDSIKVMASHVKEQLKDKGTSEVAQPIVSPDPT-DCADILLNGYR 58
Query: 90 ESNVYLIDIDGNGRFPPARVKCEFQED 116
S Y I V C+ + D
Sbjct: 59 SSGGYRIWPKSWMTVGTLNVYCDMETD 85
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 37.6 bits (88), Expect = 0.015
Identities = 46/250 (18%), Positives = 81/250 (32%), Gaps = 72/250 (28%)
Query: 221 VLVTGGTGFMGKVLLEKLL----------RSCPDIGKVYILCRAKRGLTPKARLAEFSKL 270
V VTGGTGF+G +++ LL R+ P+ +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV--------------------- 42
Query: 271 PVFERLRKECPAQLSRLHIIEGDILQANLGIKDS-DLLMLQEEVSVVFNGAASLKLEAEL 329
P +LH D+ DS + E +F+ A+ +
Sbjct: 43 ----SFLTNLPGASEKLHFFNADLSNP-----DSFAAAI--EGCVGIFHTASPIDFAVSE 91
Query: 330 KEN--VAANTRGTQRLLDIALKMKKLVAFIHFSTA----FCHPDQKVLEEKLYPSPVSPH 383
E G +L + K + FI+ S+ F D+ VL+E
Sbjct: 92 PEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDES--------- 142
Query: 384 DIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIVL 441
+W D + ++ + P +Y +K L E V E+ + + VV + ++
Sbjct: 143 ------DWSDVDLLRSVKPFG-----WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIV 191
Query: 442 -PSFQEPVPG 450
+P
Sbjct: 192 GRFVCPKLPD 201
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 37.2 bits (87), Expect = 0.019
Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 61/221 (27%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
++VTGG GF+G +++ L I + ++ K G +K L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDG----------TKFVNLVDLNI-- 47
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVF-NGAASLKLEAELKENVAANTRG 339
++ + D L + ++ +V +F GA S E + K + N +
Sbjct: 48 -----ADYMDKEDFLIQIMAGEEF------GDVEAIFHEGACSSTTEWDGKYMMDNNYQY 96
Query: 340 TQRLLDIALKMKKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETI 397
++ LL L+ + + F++ S+A +E + Y P++
Sbjct: 97 SKELLHYCLERE--IPFLYASSAATYGGRTSDFIESREYEKPLNV--------------- 139
Query: 398 KQLTPKILGPHPNSYTFTKRLTETLVDEYKTK--LPVVIVR 436
Y ++K L + V + + +V R
Sbjct: 140 --------------YGYSKFLFDEYVRQILPEANSQIVGFR 166
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 36.8 bits (85), Expect = 0.024
Identities = 34/222 (15%), Positives = 56/222 (25%), Gaps = 93/222 (41%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+++TG GF+GK L L
Sbjct: 3 IVITGAKGFVGKNLKADLT----STTDH-------------------------------- 26
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 340
HI E K+ +L + + + A + E + KE N
Sbjct: 27 -------HIFEVHRQ-----TKEEELESALLKADFIVHLAGVNRPEHD-KEFSLGNVSYL 73
Query: 341 QRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQL 400
+LDI + K I S++ + + +P
Sbjct: 74 DHVLDILTRNTKKP-AILLSSS------------IQATQDNP------------------ 102
Query: 401 TPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
Y +K E L+ EY + V I R +
Sbjct: 103 -----------YGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 36.5 bits (85), Expect = 0.029
Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 65/223 (29%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+ G G +G L +KL + G + + +RK
Sbjct: 5 ILIIGACGQIGTELTQKLRK---LYGTENV---------------------IASDIRKLN 40
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA--NTR 338
++ + L + L+ +++ ++ AA L AE A N
Sbjct: 41 TDVVNSGPFEVVNALD----FNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMN 96
Query: 339 GTQRLLDIALKMKKLVAFIHFST--AFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDET 396
+L++A K KK+ S+ F P P +P T
Sbjct: 97 SLFHVLNLA-KAKKIKKIFWPSSIAVF-GPTT--------PKENTPQY-----------T 135
Query: 397 IKQLTPKILGPHPNS-YTFTKRLTETLVDEYKTK--LPVVIVR 436
I P++ Y +K+ E + Y + V +R
Sbjct: 136 I---------MEPSTVYGISKQAGERWCEYYHNIYGVDVRSIR 169
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 36.6 bits (84), Expect = 0.030
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSK 269
VL+ G TGF+G+ + L + YIL R KA++ + +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALE 58
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 36.7 bits (86), Expect = 0.030
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 33/148 (22%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+LVTGG GF+G + +L PD ++ K L + A L
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPD---WEVINIDK--LGYGSNPANLKDL---------- 50
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEAELKENV 333
R ++GD+ D +L+ L +V V + AA S+ +
Sbjct: 51 -EDDPRYTFVKGDVA-------DYELVKELVRKVDGVVHLAAESHVDRSISSPEIF---L 99
Query: 334 AANTRGTQRLLDIALKMKKLVAFIHFST 361
+N GT LL+ + V F+H ST
Sbjct: 100 HSNVIGTYTLLESIRRENPEVRFVHVST 127
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 36.4 bits (84), Expect = 0.032
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPV 272
+L+ GGTG++G +++ L+ Y+ R + L EF L
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHP---TYVFTR--PNSSKTTLLDEFQSLGA 60
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 33.1 bits (75), Expect = 0.033
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 721 QCTYPECLKFYAKMSHLKAHL-RRHSGERS------FKCDWQDCKWQFSRSDELSRH 770
+C + EC + + + L+ HL + H + C+W+DC + + + H
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNH 59
Score = 29.2 bits (65), Expect = 0.80
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 751 KCDWQDCKWQFSRSDELSRH-RRSHFGIK 778
KC W++C S +L RH + H
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQD 31
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 36.1 bits (83), Expect = 0.042
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKL 270
+++ GGTG++GK ++ L +I R + + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQLREEF 53
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 36.0 bits (84), Expect = 0.042
Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 67/192 (34%)
Query: 221 VLVTGGTGFMGKVLLEKLLRS-----CPD---IGKVYILCRAKRGLTPKARLAEFSKLPV 272
++VTGG GF+G L++KL+ D G+ + + P A L
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR-------REFVNPSAEL-------- 47
Query: 273 FERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKEN 332
D+ D + VVF+ AA+ E++ +
Sbjct: 48 -----------------HVRDLK-------DYSWG-AGIKGDVVFHFAAN----PEVRLS 78
Query: 333 VA-------ANTRGTQRLLDIALKM--KKLVAFIHFSTAFC--HPDQKVLEEKLYPSPVS 381
N T +L+ A + + + S++ D E+ P+S
Sbjct: 79 TTEPIVHFNENVVATFNVLEWARQTGVRT---VVFASSSTVYGDADVIPTPEEEPYKPIS 135
Query: 382 PHDIM-RAMEWM 392
+ A E M
Sbjct: 136 VYGAAKAAGEVM 147
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 33.7 bits (76), Expect = 0.056
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+QC C + + +H R + C + C +F S EL + S
Sbjct: 15 EVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFF-SPELKQEHESKCEY 67
Query: 778 KPYPCTLCVKK 788
K C C++
Sbjct: 68 KKLTCLECMRT 78
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 31.4 bits (71), Expect = 0.056
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIKP 779
F C +C +F RSD LS+H H +
Sbjct: 3 FAC--PECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.0 bits (62), Expect = 0.88
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGERSFK 751
F C PEC K + + HL H+ H +
Sbjct: 3 FAC--PECPKRFMRSDHLSKHITLHELLGEER 32
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 35.3 bits (82), Expect = 0.064
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 65/190 (34%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG--------LTP--KARLAEF 267
++ L+TG GF+G LLEKLL K + + L E
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLL---------------KLNQVVIGLDNFSTGHQYNLDEV 69
Query: 268 SKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA----- 321
L E Q SR IEGD I+D + + V V + AA
Sbjct: 70 KTLVSTE--------QWSRFCFIEGD-------IRDLTTCEQVMKGVDHVLHQAALGSVP 114
Query: 322 -SLKLEAELKEN----VAANTRGTQRLLDIA--LKMKKLVAFIHFSTAFCHPDQKVL--E 372
S+ + A N G +L A +++ + +++ + D L
Sbjct: 115 RSI-------VDPITTNATNITGFLNILHAAKNAQVQSFT---YAASSSTYGDHPALPKV 164
Query: 373 EKLYPSPVSP 382
E+ +P+SP
Sbjct: 165 EENIGNPLSP 174
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 35.3 bits (81), Expect = 0.068
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP 260
VL+ GGTG++GK ++ + Y+L R +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNI 43
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 35.0 bits (81), Expect = 0.074
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAEFSKLPVFER 275
LVTGG +G ++ L R G V + R RG +L P F +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 60
Query: 276 L 276
L
Sbjct: 61 L 61
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 34.8 bits (80), Expect = 0.084
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 44/172 (25%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
VL+ G G + + ++ +L K+ + + +K+
Sbjct: 26 VLILGAGGQIARHVINQLA--------------DKQTIKQTLFARQPAKIHKPYP----- 66
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENV-AANTRG 339
+ II GD+L L + +V+ L+ + + A
Sbjct: 67 ----TNSQIIMGDVLNHA------ALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACD 116
Query: 340 TQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPH-DIMRAME 390
+R I + + + + + + R
Sbjct: 117 VKR-------------LIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAA 155
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 34.9 bits (81), Expect = 0.094
Identities = 32/148 (21%), Positives = 46/148 (31%), Gaps = 33/148 (22%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 280
+L+TGG GF+G L L D+ L R L S L
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA----TDNLHWLSSLG--------- 50
Query: 281 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKL-EAELKENV 333
+ GDI N L+ + F+ A S+ + + NV
Sbjct: 51 -----NFEFVHGDIRNKND----VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINV 101
Query: 334 AANTRGTQRLLDIALKMKKLVAFIHFST 361
GT LL+ + I+ ST
Sbjct: 102 ----GGTLNLLEAVRQYNSNCNIIYSST 125
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 34.9 bits (81), Expect = 0.10
Identities = 42/251 (16%), Positives = 82/251 (32%), Gaps = 66/251 (26%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLL-RSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFER 275
++ V GGTGF+ +L++ LL + V R + +++ +L
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTV-------RDPDNQKKVSHLLELQ---- 56
Query: 276 LRKECPAQLSRLHIIEGDILQAN---LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKEN 332
+L L I D+ I VF+ A + +E EN
Sbjct: 57 -------ELGDLKIFRADLTDELSFEAPIAG---------CDFVFHVATPVHFASEDPEN 100
Query: 333 --VAANTRGTQRLLDIALKM---KKLV-----AFIHFSTAFCHPDQKVLEEKLYPSPVSP 382
+ +G ++ + K+++ A + + V++EK
Sbjct: 101 DMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLD--GTGLVVDEK-------- 150
Query: 383 HDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVRPSIV 440
W D E + P Y +K L E ++ + + ++ V P+++
Sbjct: 151 -------NWTDIEFLTSAKPPT-----WGYPASKTLAEKAAWKFAEENNIDLITVIPTLM 198
Query: 441 L-PSFQEPVPG 450
S VP
Sbjct: 199 AGSSLTSDVPS 209
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 34.4 bits (79), Expect = 0.11
Identities = 42/307 (13%), Positives = 84/307 (27%), Gaps = 87/307 (28%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 279
+VLVTG +G G+++ +KL L R+ +G A+
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKIGGEAD------------- 51
Query: 280 CPAQLSRLHIIEGDILQANL---GIKDSDLLML-------QEEVSVVFNGAASLKLEAEL 329
+ GDI A+ + D L++ + G + +
Sbjct: 52 ---------VFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDG 102
Query: 330 KENVAANTRGTQRLLDIALKMKKLVA-FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRA 388
+ + G + +D A V + + P++
Sbjct: 103 QYPEQVDWIGQKNQIDAAKVAG--VKHIVVVGSMGGTNP---------DHPLNKLGNGNI 151
Query: 389 MEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPV 448
+ W KR E + + + P I+R +
Sbjct: 152 LVW------------------------KRKAEQYLAD--SGTPYTIIRAG----GLLDKE 181
Query: 449 PGWVDSLNGPVGVLVASGKGVV-RS-------MILNDLSTETQVFNISSNE----VEAIT 496
G + L G L+ + V R+ L + + F++ S
Sbjct: 182 GGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKD 241
Query: 497 WGEIISR 503
+ + S+
Sbjct: 242 FKALFSQ 248
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 34.6 bits (80), Expect = 0.12
Identities = 40/236 (16%), Positives = 64/236 (27%), Gaps = 83/236 (35%)
Query: 221 VLVTGGTGFMGKVLLEKLLRS-----CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFER 275
+ +TG GF+ + +L D + E F
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWK-------------KNEHMTEDMFCDEFH- 77
Query: 276 LRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA-------SLKLEAE 328
L L ++E + L + E V VFN AA +
Sbjct: 78 --------LVDLRVME-------------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSV 116
Query: 329 LKENVAANTRGTQRLLDIALKMKKLVA-FIHFSTAFCHPDQKVL---EEKLYPSPVSPHD 384
+ N NT + +++ A + F + S+A +P+ K L L S P +
Sbjct: 117 IMYN---NTMISFNMIEAARING--IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAE 171
Query: 385 IMRAMEWMDDETIKQLTPKILGPHPNS-YTFTKRLTETLVDEYKT--KLPVVIVRP 437
P + K TE L Y + I R
Sbjct: 172 ------------------------PQDAFGLEKLATEELCKHYNKDFGIECRIGRF 203
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 30.2 bits (68), Expect = 0.13
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 750 FKCDWQDCKWQFSRSDELSRHRRSHFGIK 778
F C +C +F RSD L+ H H K
Sbjct: 3 FAC--PECPKRFMRSDHLTLHILLHENKK 29
Score = 28.3 bits (63), Expect = 0.67
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 720 FQCTYPECLKFYAKMSHLKAHLRRHSGER 748
F C PEC K + + HL H+ H ++
Sbjct: 3 FAC--PECPKRFMRSDHLTLHILLHENKK 29
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 34.5 bits (80), Expect = 0.14
Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 77/254 (30%)
Query: 218 GRSVLVTGGTGFMG----KVLLEK------LLRSCPDIGKVYILCRAKRGLTPKARLAEF 267
+V VTG +GF+G LLE+ +R ++ KV L
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHL---------------- 48
Query: 268 SKLPVFERLRKECPAQLSRLHIIEGDILQAN---LGIKDSDLLMLQEEVSVVFNGAASLK 324
+ P + L + + D+ IK + VF+ A +
Sbjct: 49 ----------LDLPKAETHLTLWKADLADEGSFDEAIKG---------CTGVFHVATPMD 89
Query: 325 LEAELKEN--VAANTRGTQRLLDIALKMKKLVAFIHFSTA----FCHPDQKVLEEKLYPS 378
E++ EN + G ++ K + + S+A V +E
Sbjct: 90 FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDES---- 145
Query: 379 PVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEY--KTKLPVVIVR 436
W D E + Y +K L E +Y + + + +
Sbjct: 146 -----------CWSDMEFCRAKKMTA-----WMYFVSKTLAEQAAWKYAKENNIDFITII 189
Query: 437 PSIVL-PSFQEPVP 449
P++V+ P +P
Sbjct: 190 PTLVVGPFIMSSMP 203
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 30.4 bits (68), Expect = 0.16
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 747 ERSFKCDWQDCKWQFSRSDELSRHRRSH 774
++ F C C +F+ D L+ H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 29.3 bits (65), Expect = 0.41
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRH 744
+ F CT P C + + HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 33.4 bits (77), Expect = 0.17
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 49/175 (28%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKA--RLAEFSKLPVFERLRK 278
+ + G TG G L + ++ G R + S+LP
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ---------------AGYEVTVLVRDS--SRLPSEGP--- 45
Query: 279 ECPAQLSRLHIIEGDILQAN---LGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA 335
H++ GD+LQA + D +V+ L
Sbjct: 46 ------RPAHVVVGDVLQAADVDKTVAGQD--------AVIVLLGTRNDLSPT-----TV 86
Query: 336 NTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAME 390
+ G + ++ A+K + + ++AF D + +L D M
Sbjct: 87 MSEGARNIVA-AMKAHGVDKVVACTSAFLLWDPTKVPPRLQA----VTDDHIRMH 136
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 34.3 bits (79), Expect = 0.19
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCR 253
V +TG G +G+ L +L G +V L R
Sbjct: 150 VAITGSRGLVGRALTAQLQTG----GHEVIQLVR 179
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 33.6 bits (77), Expect = 0.27
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 15 KNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIK 74
+ ++ I E + + L+ ++ RQ C + T I
Sbjct: 17 LEQIGVSHDAQIQELSEM---WRVNQQFVTR-LQQQLVDIRQTCSRPCQDTTANKISPI- 71
Query: 75 LYRKTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
K C+++ G +S +Y I + P V CE E+
Sbjct: 72 -TGKDCQQVVDNGGKDSGLYYIKPLKAKQ--PFLVFCE-IEN 109
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.7 bits (76), Expect = 0.32
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 735 SHLKAHLRRHSGERSFKCDWQDCKWQFSRSDELSRHRRSH 774
S ++C C +L H SH
Sbjct: 166 PARVGLPPTASSGHGYQCH--VCSAVLFSPLDLDAHVASH 203
Score = 30.2 bits (67), Expect = 3.7
Identities = 11/62 (17%), Positives = 15/62 (24%), Gaps = 16/62 (25%)
Query: 718 RTFQCTYPECLKFYAKMSHLKAHLRRHS--------------GERSFKCDWQDCKWQFSR 763
+QC C L AH+ H F WQ+
Sbjct: 179 HGYQCH--VCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNHPIVQVS 236
Query: 764 SD 765
+D
Sbjct: 237 AD 238
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 33.1 bits (76), Expect = 0.38
Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 75/232 (32%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRS-----CPDI---GKVYILCRAKRGLTPKARLAEFSK 269
+ +L+TGG GF+G L +KL+ D G+ K + +
Sbjct: 27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-------------KRNVEHWIG 73
Query: 270 LPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGA--ASLKLEA 327
FE +I D+++ L EV +++ A AS
Sbjct: 74 HENFE--------------LINHDVVEP-----------LYIEVDQIYHLASPASPPNYM 108
Query: 328 ELK-ENVAANTRGTQRLLDIALKMKKLVAFIHFSTAFCHPDQKVLEEKLYPSPVSPHDIM 386
+ + NT GT +L +A ++ + S + P+ E Y V+P
Sbjct: 109 YNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSED-YWGHVNP---- 163
Query: 387 RAMEWMDDETIKQLTPKILGPHPNSYTFTKRLTETLVDEYKT--KLPVVIVR 436
+GP Y KR+ ET+ Y + V + R
Sbjct: 164 ------------------IGPR-ACYDEGKRVAETMCYAYMKQEGVEVRVAR 196
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 32.3 bits (73), Expect = 0.43
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 221 VLVTGGTGFMGKVLLEKLLR 240
+ V G TG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.6 bits (75), Expect = 0.52
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 218 GRSVLVTGGTGFMG----KVLLEK 237
G VLVTG GF+ + LLE
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEH 34
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.6 bits (74), Expect = 0.56
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRS 241
+L+ G TG +G+ ++ +++
Sbjct: 4 KILILGPTGAIGRHIVWASIKA 25
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 32.7 bits (74), Expect = 0.59
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQEDSTKTIV 122
K CEE+ G S +YLI D + P RV C+ ++ V
Sbjct: 209 KECEEIIRKGGETSEMYLIQPDSS--VKPYRVYCDMNTENGGWTV 251
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 32.5 bits (74), Expect = 0.61
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMG 231
A A W +VL+TGG G +G
Sbjct: 248 AAAAGAASWQPSGTVLITGGMGAIG 272
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 32.4 bits (74), Expect = 0.62
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 26/173 (15%)
Query: 207 ADMGDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAE 266
A W A +VLVTG +L R G ++L + A
Sbjct: 240 AHGTASPWWQADGTVLVTGAEEPAAAEAARRLARD----GAGHLLLHTTPSGSEGAEGTS 295
Query: 267 F-SKLPVFERLRKECPAQLSRLHIIEGDI-----LQANLGIKDSDLLMLQEEVSVVFNGA 320
++ L E + ++ D+ L +S V +
Sbjct: 296 GAAEDSGLAGLVAELADLGATATVVTCDLTDAEAAARLLAGVSDA-----HPLSAVLHLP 350
Query: 321 ASLKL-------EAELKENVAANTRGTQRL----LDIALKMKKLVAFIHFSTA 362
++ L V A L + A + + FS+
Sbjct: 351 PTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSV 403
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 32.3 bits (73), Expect = 0.73
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 64 TTLPKARRQIKLYRKTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ + + + CE++ G S +Y+I D P RV C+ + D
Sbjct: 200 SPCVASCNIPVVSGRECEDIYRKGGETSEMYIIQPDPFTT--PYRVYCDMETD 250
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 32.3 bits (74), Expect = 0.73
Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 41/163 (25%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFER 275
VLV GG G++G + LLR D V I L ++ + +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLR---DTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 276 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL--MLQEEV---SVV-FNGAASLKLEAE- 328
+ P + GD+ + D L + +VV + E
Sbjct: 60 DGPKPPWADRYAALEVGDVR-------NEDFLNGVFTRHGPIDAVVHM---CAFLAVGES 109
Query: 329 ----LK--ENVAANTRGTQRLLDIALK--MKKLVAFIHF-STA 362
LK +N N G RLL L K++ F S+A
Sbjct: 110 VRDPLKYYDN---NVVGILRLLQAMLLHKCDKII----FSSSA 145
>2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain,
carbohydrate recognition, lectin, immune system; 1.21A
{Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F*
2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A*
2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A*
Length = 217
Score = 31.4 bits (72), Expect = 0.81
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ C++L G S + I + V C+ D
Sbjct: 7 RNCKDLLDRGYFLSGWHTIYLPDCRPLT---VLCDMDTD 42
>2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system;
1.90A {Homo sapiens}
Length = 237
Score = 31.5 bits (72), Expect = 0.87
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ C++L G S + I + V C+ D
Sbjct: 4 RNCKDLLDRGYFLSGWHTIYLPDCRPLT---VLCDMDTD 39
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization,
complex (blood coagulation/peptide); 2.01A {Homo
sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A
3fib_A
Length = 269
Score = 31.6 bits (72), Expect = 0.89
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
K C+++A G +S +Y I V CE
Sbjct: 9 KDCQDIANKGAKQSGLYFIKPLKAN--QQFLVYCEIDGS 45
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 31.7 bits (73), Expect = 0.97
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 219 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 278
++++VTGG GF+G + + + PD V++ K LT A +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDK--LTYAGNKANLEAILG------ 53
Query: 279 ECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEAELKE 331
R+ ++ GDI D++L+ L + + + AA SL +
Sbjct: 54 ------DRVELVVGDIA-------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPF-- 98
Query: 332 NVAANTRGTQRLLDIALKMKKLVAFIHFST 361
+ N GT LL+ A K F H ST
Sbjct: 99 -IHTNFIGTYTLLEAARKYDIR--FHHVST 125
>1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular
ligand, signaling protein; 2.25A {Homo sapiens} PDB:
1z3s_A 2gy7_A*
Length = 217
Score = 31.4 bits (72), Expect = 1.0
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ C E+ G T + +Y + + + C+ +
Sbjct: 3 RDCAEVFKSGHTTNGIYTLTFPNSTE--EIKAYCDMEAG 39
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B
2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B
3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Length = 328
Score = 31.8 bits (72), Expect = 1.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 45 DYLKTIILGARQYCLKEPLTTLPKARRQIKLYRKTCEELALLGVTESNVYLIDIDGNGRF 104
L++ + +YC + P T K CEE+ G S +YLI D +
Sbjct: 47 QKLESDVSAQMEYC-RTPCTVSCNIPVV---SGKECEEIIRKGGETSEMYLIQPDSSV-- 100
Query: 105 PPARVKCE 112
P RV C+
Sbjct: 101 KPYRVYCD 108
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 32.0 bits (73), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 213 ARWYAGRSVLVTGGTGFMGKVL 234
W +VLVTGGTG +G +
Sbjct: 221 DEWKPTGTVLVTGGTGGVGGQI 242
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen,
immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens}
PDB: 2j60_A* 2j64_A
Length = 221
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ C EL G T S Y + + P V C+ +
Sbjct: 13 RNCRELLSQGATLSGWYHLCLPEGRALP---VFCDMDTE 48
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 717 VRTFQCTYPECLKFYAKMSHLKAHLRRHSGER 748
+ F C Y C K + L+AHLR H+ E+
Sbjct: 7 GKIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 31.3 bits (71), Expect = 1.4
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 17 KRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKEPLTTLPKARRQIKLY 76
+L +I + + + I + LK + C + T+ +
Sbjct: 11 ASILTHDSSIRYLQEI---YNSNNQKIVN-LKEKVAQLEAQCQEPCKDTVQIHD----IT 62
Query: 77 RKTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
K C+++A G +S +Y I V CE
Sbjct: 63 GKDCQDIANKGAKQSGLYFIKPLKAN--QQFLVYCEIDGS 100
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood
clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon
marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Length = 323
Score = 31.0 bits (70), Expect = 1.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCE 112
CE++ G S Y I D P +V C+
Sbjct: 74 MHCEDIYRNGGRTSEAYYIQPDLFSE--PYKVFCD 106
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 31.2 bits (71), Expect = 1.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 210 GDVARWYAGRSVLVTGGTGFMG 231
G R SVLVTGGTG +G
Sbjct: 231 GSGKRPPVHGSVLVTGGTGGIG 252
>4e72_A Uncharacterized protein; PF11738 family, DUF3298, structural
genomics, joint center F structural genomics, JCSG;
2.15A {Pseudomonas aeruginosa}
Length = 226
Score = 30.5 bits (68), Expect = 1.8
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 569 GMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCL 628
G H + N+D + ++L+L D + ++ F+ + L + +
Sbjct: 111 GAHGMPGRGFINYDRRQHKVLSLQDMLVPGQEEAFWKQAELAHKAWLLANKLDQDADFQK 170
Query: 629 KEPL 632
P
Sbjct: 171 TWPF 174
Score = 28.9 bits (64), Expect = 5.9
Identities = 9/62 (14%), Positives = 22/62 (35%)
Query: 2 HLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLKTIILGARQYCLKE 61
H + N+D + ++L+L D + ++ F+ + L + +
Sbjct: 113 HGMPGRGFINYDRRQHKVLSLQDMLVPGQEEAFWKQAELAHKAWLLANKLDQDADFQKTW 172
Query: 62 PL 63
P
Sbjct: 173 PF 174
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.0 bits (70), Expect = 2.1
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 32/165 (19%)
Query: 213 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPV 272
+S ++TGG G G L + L G ++ ++ G +
Sbjct: 1879 TFCPPHKSYVITGGLGGFGLQLAQWLRLR----GAQKLVLTSRSG--IRTGYQ------- 1925
Query: 273 FERLRKECPAQLSRLHIIEGDI-----LQANLGIKDSDLLMLQEEVSVVFNGAASLK--- 324
R +E Q ++ + + ++ + V VFN A L+
Sbjct: 1926 -ARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL-----GPVGGVFNLAMVLRDAV 1979
Query: 325 ---LEAE-LKENVAANTRGTQRLLDIALKM-KKLVAFIHFSTAFC 364
E ++ GT L + + +L F+ FS+ C
Sbjct: 1980 LENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSC 2024
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 30.6 bits (69), Expect = 2.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
+ C+++A G +S +Y I V CE
Sbjct: 151 RDCQDIANKGARKSGLYFIKPQKAK--QSFLVYCEIDTY 187
>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET:
MAN RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP:
a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A*
1hmw_A*
Length = 678
Score = 30.9 bits (69), Expect = 2.3
Identities = 21/146 (14%), Positives = 41/146 (28%), Gaps = 14/146 (9%)
Query: 356 FIHFSTAFCHPDQKVLEEKLYPSPVSPHDIMRAMEWMDDETIKQLTPKILGPHPNSYTFT 415
A+ D Y I +A ++ D PK N
Sbjct: 63 LETIIQAYIEKD-----SHYYGDDKVFDQISKAFKYWYDS-----DPKSRNWWHNEIATP 112
Query: 416 KRLTETLVDEYKTKLPVVIVRPSIVLPSFQEPVPGWVDSLNGPVGVLVASGKGVVRSMIL 475
+ L E L+ K P+ + + P N +A R+++
Sbjct: 113 QALGEMLILMRYGKKPLDEALVHKLTERMKRGEPEKKTGAN---KTDIALHY-FYRALLT 168
Query: 476 NDLSTETQVFNISSNEVEAITWGEII 501
+D + + V+ + + E +
Sbjct: 169 SDEALLSFAVKELFYPVQFVHYEEGL 194
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 30.6 bits (69), Expect = 2.3
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 78 KTCEELALLGVTESNVYLIDIDGNGRFPPARVKCEFQED 116
K C+++A G +S +Y I V CE
Sbjct: 151 KDCQDIANKGAKQSGLYFIKPLKAN--QQFLVYCEIDGS 187
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 29.9 bits (68), Expect = 2.7
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 25/105 (23%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARL--------AEF 267
++V+ G +G +L++ K +++ T A L F
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKR----NLKNFVILDRVENPTALAELKAINPKVNITF 59
Query: 268 SKLPV------FERLRKECPAQLSRLHIIEGDILQANLGI-KDSD 305
V ++L K+ QL + DIL GI D
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTV-----DILINGAGILDDHQ 99
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.8 bits (67), Expect = 3.1
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 217 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKAR 263
G+ +V GTG +G L +V + R A
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDKAQAAAD 161
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.6 bits (58), Expect = 3.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 749 SFKCDWQDCKWQFSRSDELSRHRRSHFGI 777
+F C C +F RSD LS+H ++ F +
Sbjct: 2 AFAC--PACPKRFMRSDALSKHIKTAFIV 28
>2hhi_A Antigen MPT64, immunogenic protein MPT64; secreted antigen,
residual dipolar COUP solution structure, beta-grAsp,
unknown function; NMR {Mycobacterium tuberculosis}
Length = 204
Score = 29.5 bits (66), Expect = 3.3
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 569 GMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTFYIANIDVNIDDYLK 617
G H + +WD ++ + + + + L
Sbjct: 98 GTHPTTTYKAFDWDQAYRKPITYDTLWQADTD---PLPVVFPIVQGELS 143
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 29.4 bits (67), Expect = 4.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLG 300
L+K+ Q + I + D LQ +
Sbjct: 65 AFLQKKYN-QQKNITIYQNDALQFDFS 90
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.6 bits (67), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 220 SVLVTGGTGFMGKVLLEKLLRSCP 243
S+ VTG TG +G ++++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 29.1 bits (66), Expect = 5.2
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 218 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 277
+ V++TG + +G L+ + + + SK +R+
Sbjct: 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIV 87
Query: 278 KECPAQLSRLHIIEGDILQANLGI-KDSDLLMLQEE 312
+E + R+ D L N G+ + + +E
Sbjct: 88 REGIERFGRI-----DSLVNNAGVFLAKPFVEMTQE 118
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 29.2 bits (66), Expect = 5.7
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 220 SVLVTGGTGFMGKVLLEKLLR 240
++++TG TG +G + + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIA 22
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 29.2 bits (66), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 368 QKVLEEKLYPSPVSPHDIMRAME 390
QK++EE P+ ++P I ME
Sbjct: 324 QKIVEEA--PATIAPLAIFEFME 344
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 6.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 221 VLVTGGTGFMGKVLLEKLLRSCP 243
+ +TG TG +G ++E L+++ P
Sbjct: 2 IAITGATGQLGHYVIESLMKTVP 24
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 29.1 bits (66), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 368 QKVLEEKLYPSPVSPHDIMRAME 390
QK++EE P+ ++P I ME
Sbjct: 308 QKIVEEA--PATIAPLAIFEFME 328
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 29.2 bits (66), Expect = 7.3
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 368 QKVLEEKLYPSPVSPHDIMRAME 390
QK++EE P ++ + ME
Sbjct: 314 QKIIEEA--PVTIAKAETFHEME 334
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 7.5
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 216 YAGRSVLVTG-GTGFMGKVLLEKLLR 240
+ + VL+TG G G +G +L+ LL+
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQ 499
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 28.3 bits (64), Expect = 9.0
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 274 ERLRKECPAQLSRLHIIEGDILQANLG 300
RL+ P +L I + D + N G
Sbjct: 57 ARLQTH-PFLGPKLTIYQQDAMTFNFG 82
>3s5t_A DUF3298 family protein; peptidoglycan deacetylase N-terminal
noncatalytic region, ST genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.30A {Bacteroides
fragilis}
Length = 265
Score = 28.5 bits (63), Expect = 9.7
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 569 GMHLLEYFTTRNWDFKNKRLLALHDNISEKDKQTF 603
G H + T N D N R L L D + K+
Sbjct: 145 GAHGIYMTTFLNMDLINLRPLKLDDIFTGDYKEAL 179
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 9.9
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 764 SDELSRHRRSHFGIKPYPCTLCVKKSLLAILNCPHEAECTPTFKHRAEKTSTPGPSMCKR 823
S S H + ++ C C + + L HE C R E G ++ +
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSILKLK-EHEDYCG----ARTELCGNCGRNVLVK 56
Query: 824 HLAKHLKVHERQK 836
L H +V R+
Sbjct: 57 DLKTHPEVCGREG 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,300,174
Number of extensions: 828087
Number of successful extensions: 3322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3067
Number of HSP's successfully gapped: 535
Length of query: 851
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 749
Effective length of database: 3,853,851
Effective search space: 2886534399
Effective search space used: 2886534399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.8 bits)