BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11860
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
 pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
          Length = 397

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 2   TERDIGTYYEDSKWVQTLNFLLQCNWGARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLT 61
           T +++  Y ++   +   +F LQ     +HLD+  +++KV     S    Y Y+    L 
Sbjct: 131 TPKNLKNYIDNVVGIIDHHFDLQ-----KHLDAEPRIVKVSGSCSSLVFNYWYEK---LQ 182

Query: 62  DPREFIYEFFPLQPEWQLLKTSISLRDFEE 91
             RE +    PL     L+ TS   R  EE
Sbjct: 183 GDREVVMNIAPLLMGAILIDTSNMRRKVEE 212


>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt4673 From B.
           Thetaiotaomicron
 pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt4673 From B.
           Thetaiotaomicron
          Length = 758

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 48  DSLRYEYDD-HYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPF 94
           ++L +E  D  Y L +  +F+Y    +  EW  LK++I+   +  L +
Sbjct: 672 NNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSY 719


>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative One Component System Bt4673 From B.
           Thetaiotaomicron
 pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative One Component System Bt4673 From B.
           Thetaiotaomicron
          Length = 758

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 48  DSLRYEYDD-HYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPF 94
           ++L +E  D  Y L +  +F+Y    +  EW  LK++I+   +  L +
Sbjct: 672 NNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSY 719


>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 26.2 bits (56), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 22  LLQCNWGARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDP--REFIYEFFPLQPEWQL 79
           ++ C + A H    ++ ++  A+      R+   DHY   DP   EF+     L+    +
Sbjct: 90  IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV 149

Query: 80  LKTSIS 85
            ++S+S
Sbjct: 150 RESSLS 155


>pdb|3EZ9|A Chain A, Partition Protein
 pdb|3EZ9|B Chain B, Partition Protein
 pdb|3EZF|A Chain A, Partition Protein
          Length = 403

 Score = 25.4 bits (54), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 36  KQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPFV 95
           K+V++       D +    DD +  +  RE + E  P Q ++++L+ +I  R  ++  F+
Sbjct: 192 KEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFI 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,019,229
Number of Sequences: 62578
Number of extensions: 157142
Number of successful extensions: 258
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 8
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)