Query psy11860
Match_columns 123
No_of_seqs 108 out of 208
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:48:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5279 CYK3 Uncharacterized p 99.7 1E-18 2.2E-23 149.9 4.5 94 14-119 248-349 (521)
2 KOG4575|consensus 99.3 2.6E-13 5.7E-18 119.6 1.8 103 14-120 553-658 (874)
3 KOG4575|consensus 98.0 1.3E-06 2.9E-11 77.9 -0.1 116 4-120 426-573 (874)
4 smart00460 TGc Transglutaminas 84.9 0.61 1.3E-05 28.6 1.6 15 13-27 46-61 (68)
5 PF09027 GTPase_binding: GTPas 53.7 5.5 0.00012 26.2 0.5 30 51-80 33-62 (66)
6 PF05182 Fip1: Fip1 motif; In 25.2 33 0.00072 20.8 0.7 22 84-105 3-29 (45)
7 COG5351 Uncharacterized protei 21.0 76 0.0016 26.9 2.2 44 51-95 237-281 (367)
8 COG2947 Uncharacterized conser 19.9 85 0.0018 23.8 2.0 27 70-96 88-122 (156)
9 PF15534 Toxin_56: Putative to 18.5 37 0.0008 22.8 -0.1 15 14-28 11-26 (79)
10 COG0764 FabA 3-hydroxymyristoy 16.9 51 0.0011 24.4 0.3 19 58-76 38-57 (147)
No 1
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning]
Probab=99.74 E-value=1e-18 Score=149.95 Aligned_cols=94 Identities=24% Similarity=0.496 Sum_probs=84.7
Q ss_pred CCCceeee--------eeecccCCCcccchhhhhhhccCCCCCCccccCCccccccChhhhHHhcCCCCCCceeccCCCC
Q psy11860 14 KWVQTLNF--------LLQCNWGARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWQLLKTSIS 85 (123)
Q Consensus 14 ~~nHaWNa--------LiD~~Wgag~~~~~~~~~~~~~~~~~~~~~~~~~~~yFlt~P~~fi~tHfP~d~~wQlL~~pis 85 (123)
..|||||+ +||.|||++...+.+. -..+++..||++.|+++|++|+|..+.||++.++++
T Consensus 248 ~iNHaWN~VkiD~~yy~VDtTwgdPI~~d~~~------------~~~~~n~~YF~lap~qMi~tH~p~k~~wq~~~~~~d 315 (521)
T COG5279 248 NINHAWNIVKIDNEYYLVDTTWGDPIHPDQNS------------KSSKINHSYFLLAPNQMIATHVPEKDDWQFIKPDLD 315 (521)
T ss_pred cccceeeEEEECCeEEEEeeecCCCCcccccc------------cccccCchhccCChHHHhhhcCCCcchhhccCCchh
Confidence 68999999 9999999998765321 125889999999999999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHcCCCCCCCCcceEEEeCC
Q psy11860 86 LRDFEELPFVRSLFFRYGLYFPDTNTKAVMYTDQ 119 (123)
Q Consensus 86 ~~~f~~~p~~~~~FF~~gL~l~s~~~~~~~~~~~ 119 (123)
...++.+|.++|.||+.||+|.++.++++...|.
T Consensus 316 ~~~~~~lp~vt~~~f~~~l~l~~~~~~~~~~~~~ 349 (521)
T COG5279 316 MPIVMALPWVSPVFFTLGLKLRKFNTSILHLNDL 349 (521)
T ss_pred hhhhhhcccccchhhcccceeeeccccccccCcc
Confidence 9999999999999999999999999998877654
No 2
>KOG4575|consensus
Probab=99.34 E-value=2.6e-13 Score=119.63 Aligned_cols=103 Identities=25% Similarity=0.265 Sum_probs=83.9
Q ss_pred CCCceeee-eeecccCCCcccchhh--hhhhccCCCCCCccccCCccccccChhhhHHhcCCCCCCceeccCCCCHHHHh
Q psy11860 14 KWVQTLNF-LLQCNWGARHLDSAKQ--VLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFE 90 (123)
Q Consensus 14 ~~nHaWNa-LiD~~Wgag~~~~~~~--~~~~~~~~~~~~~~~~~~~~yFlt~P~~fi~tHfP~d~~wQlL~~pis~~~f~ 90 (123)
+.||+||. ++|-.|+ ++|.+.+ ++.+.+ .+..+. ...+.+||||.|+|.|+||+|++|..|++.+.|+...-+
T Consensus 553 kyNh~w~~~~~d~e~r--~iD~s~~~s~pih~~-~~~~s~-~~~~n~yFlm~P~E~i~Th~penp~~qfImpsv~~~~~~ 628 (874)
T KOG4575|consen 553 KYNHSWIDNKLDEETR--YIDKSGAASIPIHLP-PKGDSL-IFHYNLYFLMSPEENIITHMPENPLKQFIMPSVTEDVCY 628 (874)
T ss_pred ecchhhhhhhccceeE--EEeeccccccccccC-cCCcch-hccccceeecChhhheecCCCCchhhhhccccccchhee
Confidence 57999999 9999996 6655432 121111 111222 345689999999999999999999999999999999999
Q ss_pred cCCCCChHHHHcCCCCCCCCcceEEEeCCC
Q psy11860 91 ELPFVRSLFFRYGLYFPDTNTKAVMYTDQT 120 (123)
Q Consensus 91 ~~p~~~~~FF~~gL~l~s~~~~~~~~~~~~ 120 (123)
.+|++.+.||+++|+|.+++|.+++.+|.-
T Consensus 629 ~LPwVssvyF~n~Lkl~kFnt~v~fl~d~e 658 (874)
T KOG4575|consen 629 LLPWVSSVYFENKLKLKKFNTVVTFLVDAE 658 (874)
T ss_pred eeeccchhhhhcceeeeeecceeeeeccch
Confidence 999999999999999999999999998863
No 3
>KOG4575|consensus
Probab=97.98 E-value=1.3e-06 Score=77.91 Aligned_cols=116 Identities=42% Similarity=0.746 Sum_probs=86.8
Q ss_pred CCCC-cccCCCCC------Cceeee------------eeecccCCCcccchhhhhhhccCCCCCCccccCCccccccCh-
Q psy11860 4 RDIG-TYYEDSKW------VQTLNF------------LLQCNWGARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDP- 63 (123)
Q Consensus 4 ~~pG-~~~~~~~~------nHaWNa------------LiD~~Wgag~~~~~~~~~~~~~~~~~~~~~~~~~~~yFlt~P- 63 (123)
++|| -.++..+. ...||+ ++.|+|+|+++..+.+..+ +....-.......|++||.++|
T Consensus 426 ~~Pgq~sv~~~~~Nmnfsa~~tw~r~i~dgrvqvSw~~~q~n~~Ar~~~tal~~~r-~~~i~~~E~~~~tdd~~~~~e~r 504 (874)
T KOG4575|consen 426 YQPGQYSVDDHRFNMNFSARNTWNRVILDGRVQVSWRFVQCNWGARHLVTALDGSR-EAKIDGNELRYETDDHYFMTESR 504 (874)
T ss_pred CCceeEeccccccccchhhhhchheeeecCcccccHHHHhhccCcchhhhHhhhcc-ceeeeeeeeeEeecccccccccc
Confidence 7889 45665544 568998 5667899998776655321 1112223356788999999999
Q ss_pred --hhhHH--hcCCCCCCceeccCCCCH-------HHHhcCCCCChHHHHcCCCCCCCCc-ceEEEeCCC
Q psy11860 64 --REFIY--EFFPLQPEWQLLKTSISL-------RDFEELPFVRSLFFRYGLYFPDTNT-KAVMYTDQT 120 (123)
Q Consensus 64 --~~fi~--tHfP~d~~wQlL~~pis~-------~~f~~~p~~~~~FF~~gL~l~s~~~-~~~~~~~~~ 120 (123)
++||+ .-.|.+..|++.+.+.|+ ..|+.-|.+-.-||+++...+.-.. +-++..|..
T Consensus 505 tse~~iyeg~~tP~e~awl~k~~~~sLdlwCEvi~gflK~P~~i~~~fkyNh~w~~~~~d~e~r~iD~s 573 (874)
T KOG4575|consen 505 TSEEFIYEGEFTPSEHAWLLKPRPLSLDLWCEVILGFLKIPFVISLFFKYNHSWIDNKLDEETRYIDKS 573 (874)
T ss_pred chhhheeccccChhHHHHHhhhhhhhcchhHHHHHhhhcCccceeeeeecchhhhhhhccceeEEEeec
Confidence 99999 789999999999999999 9999999999999999887654432 335555543
No 4
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=84.88 E-value=0.61 Score=28.61 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=11.6
Q ss_pred CCCCceeee-eeeccc
Q psy11860 13 SKWVQTLNF-LLQCNW 27 (123)
Q Consensus 13 ~~~nHaWNa-LiD~~W 27 (123)
...+|+||. .+|..|
T Consensus 46 ~~~~H~W~ev~~~~~W 61 (68)
T smart00460 46 IWEAHAWAEVYLEGGW 61 (68)
T ss_pred CCCcEEEEEEEECCCe
Confidence 368899999 666666
No 5
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=53.70 E-value=5.5 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=3.4
Q ss_pred cccCCccccccChhhhHHhcCCCCCCceec
Q psy11860 51 RYEYDDHYFLTDPREFIYEFFPLQPEWQLL 80 (123)
Q Consensus 51 ~~~~~~~yFlt~P~~fi~tHfP~d~~wQlL 80 (123)
..++|+.||.++|-..++..-+...-.|++
T Consensus 33 ~~~idn~yl~mdp~~~~~~~~s~a~p~~~~ 62 (66)
T PF09027_consen 33 PSEIDNNYLNMDPIDMAYNLNSTARPQQHL 62 (66)
T ss_dssp S----TTT----------------------
T ss_pred hhhhhhhhhcccccchhhcccccccccccc
Confidence 458899999999999999865544334544
No 6
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=25.21 E-value=33 Score=20.81 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=15.3
Q ss_pred CCHHHHhcCCCCCh-----HHHHcCCC
Q psy11860 84 ISLRDFEELPFVRS-----LFFRYGLY 105 (123)
Q Consensus 84 is~~~f~~~p~~~~-----~FF~~gL~ 105 (123)
+.++.++.-|...| +||++|+.
T Consensus 3 ~d~d~~~~KPWr~pGaDisDyFNYGf~ 29 (45)
T PF05182_consen 3 VDIDSFEEKPWRKPGADISDYFNYGFN 29 (45)
T ss_pred cChhhhccCCccCCCCChhhhcCCCCC
Confidence 45566777777654 58999974
No 7
>COG5351 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=76 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=36.0
Q ss_pred cccCCccccccChhhhHHhcCCCCCCceecc-CCCCHHHHhcCCCC
Q psy11860 51 RYEYDDHYFLTDPREFIYEFFPLQPEWQLLK-TSISLRDFEELPFV 95 (123)
Q Consensus 51 ~~~~~~~yFlt~P~~fi~tHfP~d~~wQlL~-~pis~~~f~~~p~~ 95 (123)
-..||+-||.+.|..-.-.|.=-..+-|||+ .+.-.+.|- +|-+
T Consensus 237 P~DFDeRyfQ~AppDq~tdHlrGgE~v~LvNLt~e~~~afr-lP~~ 281 (367)
T COG5351 237 PRDFDERYFQAAPPDQVTDHLRGGEKVELVNLTSEHPVAFR-LPGL 281 (367)
T ss_pred CCccchHhhhcCChhhcccccCCCceEEEEecCCccchhhc-CCcc
Confidence 4789999999999999999999999999997 455555555 6654
No 8
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=19.88 E-value=85 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=21.1
Q ss_pred cCCCCCCceecc--------CCCCHHHHhcCCCCC
Q psy11860 70 FFPLQPEWQLLK--------TSISLRDFEELPFVR 96 (123)
Q Consensus 70 HfP~d~~wQlL~--------~pis~~~f~~~p~~~ 96 (123)
-=|++|+|+.+. ++||+++.-.+|-+-
T Consensus 88 a~~e~pRW~~Vdv~~v~~~~~~vtL~~lK~~~~~~ 122 (156)
T COG2947 88 ATPEDPRWYCVDVRFVRKLPRPVTLKELKANPELA 122 (156)
T ss_pred cccCCCCeeEEeeHHHhhcCCCccHHHHhcCcchh
Confidence 347899999874 689999998777653
No 9
>PF15534 Toxin_56: Putative toxin 56
Probab=18.45 E-value=37 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.0
Q ss_pred CCCceeeeeeec-ccC
Q psy11860 14 KWVQTLNFLLQC-NWG 28 (123)
Q Consensus 14 ~~nHaWNaLiD~-~Wg 28 (123)
.+.|.||.+++. +|+
T Consensus 11 ~~KH~w~~v~~~~~w~ 26 (79)
T PF15534_consen 11 QPKHNWNKVTKGHNWK 26 (79)
T ss_pred CcccchhhhcccccHH
Confidence 468999999988 997
No 10
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=16.93 E-value=51 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=12.5
Q ss_pred ccccChhhhHH-hcCCCCCC
Q psy11860 58 YFLTDPREFIY-EFFPLQPE 76 (123)
Q Consensus 58 yFlt~P~~fi~-tHfP~d~~ 76 (123)
|+..++++..+ -|||.+|-
T Consensus 38 ~k~Vt~nepfF~gHFP~~Pi 57 (147)
T COG0764 38 IKNVTINEPFFTGHFPGDPI 57 (147)
T ss_pred EEccCCCCCeeCCcCCCCCC
Confidence 45555555544 49999985
Done!