Query psy11860
Match_columns 123
No_of_seqs 108 out of 208
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:48:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3isr_A Transglutaminase-like e 33.0 10 0.00036 29.6 0.3 16 14-29 212-235 (293)
2 2qiy_C Ubiquitin carboxyl-term 21.7 27 0.00093 20.7 0.7 15 53-68 20-34 (48)
3 1wy3_A Villin; structural prot 12.9 82 0.0028 17.2 1.2 11 84-94 12-22 (35)
4 1und_A Advillin, P92; actin bi 12.0 90 0.0031 17.2 1.2 11 84-94 14-24 (37)
5 4dvz_A Cytotoxicity-associated 10.7 97 0.0033 26.3 1.5 18 13-30 70-101 (569)
6 4dvy_P Cytotoxicity-associated 10.4 1.1E+02 0.0039 27.0 1.9 19 12-30 329-361 (876)
7 2k8f_B Cellular tumor antigen 10.1 70 0.0024 17.9 0.3 12 80-91 10-21 (39)
8 3cm8_B Peptide from RNA-direct 9.6 79 0.0027 16.8 0.4 18 56-73 11-29 (30)
9 4h4g_A (3R)-hydroxymyristoyl-[ 8.8 1.4E+02 0.0047 20.8 1.5 16 61-76 50-65 (160)
10 2kp6_A Uncharacterized protein 8.6 1.9E+02 0.0064 18.7 2.0 20 64-84 28-47 (82)
No 1
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=33.01 E-value=10 Score=29.63 Aligned_cols=16 Identities=0% Similarity=-0.238 Sum_probs=12.4
Q ss_pred CCCceeee--------eeecccCC
Q psy11860 14 KWVQTLNF--------LLQCNWGA 29 (123)
Q Consensus 14 ~~nHaWNa--------LiD~~Wga 29 (123)
...|||+. .+|+||++
T Consensus 212 ~~~HAW~Evyl~ggWv~~DpT~~~ 235 (293)
T 3isr_A 212 PDFHACFEAYIGGNWIIFDATRLV 235 (293)
T ss_dssp CCEEEEEEEEETTEEEEECTTCCS
T ss_pred CCeEEEEEEEECCcEEEEECCCCC
Confidence 45799999 67777764
No 2
>2qiy_C Ubiquitin carboxyl-terminal hydrolase 3; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae}
Probab=21.72 E-value=27 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=12.2
Q ss_pred cCCccccccChhhhHH
Q psy11860 53 EYDDHYFLTDPREFIY 68 (123)
Q Consensus 53 ~~~~~yFlt~P~~fi~ 68 (123)
+| |.||.|+|++|-.
T Consensus 20 e~-Plf~NT~e~EFs~ 34 (48)
T 2qiy_C 20 QL-PLFINTTEAEFAA 34 (48)
T ss_dssp -C-CEEESSCHHHHHH
T ss_pred ee-eeEeeCCHHHHHH
Confidence 44 8999999999964
No 3
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=12.90 E-value=82 Score=17.17 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.8
Q ss_pred CCHHHHhcCCC
Q psy11860 84 ISLRDFEELPF 94 (123)
Q Consensus 84 is~~~f~~~p~ 94 (123)
||.++|..+|.
T Consensus 12 msr~eF~~LP~ 22 (35)
T 1wy3_A 12 MTRSAFANLPL 22 (35)
T ss_dssp SCHHHHHHSCH
T ss_pred CCHHHHHHCcH
Confidence 78888888875
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=11.99 E-value=90 Score=17.18 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=8.5
Q ss_pred CCHHHHhcCCC
Q psy11860 84 ISLRDFEELPF 94 (123)
Q Consensus 84 is~~~f~~~p~ 94 (123)
||.++|..+|.
T Consensus 14 msr~eF~~LP~ 24 (37)
T 1und_A 14 ITRGQFAALPG 24 (37)
T ss_dssp SCHHHHHHSCH
T ss_pred cCHHHHHHChH
Confidence 67888888874
No 5
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=10.66 E-value=97 Score=26.27 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=13.1
Q ss_pred CCCCceeee--------------eeecccCCC
Q psy11860 13 SKWVQTLNF--------------LLQCNWGAR 30 (123)
Q Consensus 13 ~~~nHaWNa--------------LiD~~Wgag 30 (123)
++.+|.||| ||.++-..|
T Consensus 70 pearhdwnatvgyk~qqg~nvatlin~hl~ng 101 (569)
T 4dvz_A 70 FGDKHDWNATVGYKDQQGNNVATLINVHMKNG 101 (569)
T ss_dssp --CSCCEEEEEEEEC----CEEEEEEEEETTS
T ss_pred ccccccccccccccccccchHHHHHHHHhcCC
Confidence 478999999 888876544
No 6
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=10.44 E-value=1.1e+02 Score=26.98 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=14.7
Q ss_pred CCCCCceeee--------------eeecccCCC
Q psy11860 12 DSKWVQTLNF--------------LLQCNWGAR 30 (123)
Q Consensus 12 ~~~~nHaWNa--------------LiD~~Wgag 30 (123)
+++.+|.||| ||.++-..|
T Consensus 329 gpearhdwnatvgyk~qqgnnvatlin~hl~ng 361 (876)
T 4dvy_P 329 GFGDKHDWNATVGYKDQQGNNVATLINVHMKNG 361 (876)
T ss_dssp CCCTTCCEEEEEEEC-----CCEEEEEEEETTS
T ss_pred CccccccccccccccccccchHHHHHHHHhcCC
Confidence 3478999999 888876544
No 7
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=10.11 E-value=70 Score=17.86 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.8
Q ss_pred ccCCCCHHHHhc
Q psy11860 80 LKTSISLRDFEE 91 (123)
Q Consensus 80 L~~pis~~~f~~ 91 (123)
+++|+|.|.|..
T Consensus 10 iepPLSQETFsd 21 (39)
T 2k8f_B 10 VEPPLSQETFSD 21 (39)
T ss_dssp CCCCCSCHHHHH
T ss_pred cCCCccHHHHHH
Confidence 578999999864
No 8
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=9.60 E-value=79 Score=16.85 Aligned_cols=18 Identities=33% Similarity=0.502 Sum_probs=12.8
Q ss_pred ccccccChhh-hHHhcCCC
Q psy11860 56 DHYFLTDPRE-FIYEFFPL 73 (123)
Q Consensus 56 ~~yFlt~P~~-fi~tHfP~ 73 (123)
.+-|+-.|.+ .|.+|||.
T Consensus 11 ~f~FL~~~~~~~istt~Py 29 (30)
T 3cm8_B 11 TLLFLKVPAQNAISTTFPY 29 (30)
T ss_pred cEEEEcChhhhhheecccc
Confidence 4557777765 47889985
No 9
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=8.84 E-value=1.4e+02 Score=20.81 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=11.6
Q ss_pred cChhhhHHhcCCCCCC
Q psy11860 61 TDPREFIYEFFPLQPE 76 (123)
Q Consensus 61 t~P~~fi~tHfP~d~~ 76 (123)
+..+.|..-|||.+|.
T Consensus 50 t~~e~ff~gHFp~~Pv 65 (160)
T 4h4g_A 50 TVNEPFFTGHFPKRPV 65 (160)
T ss_dssp CTTSGGGGTSCTTSCC
T ss_pred ccCcccccCCCCCCCc
Confidence 3445566789999986
No 10
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=8.55 E-value=1.9e+02 Score=18.74 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=15.4
Q ss_pred hhhHHhcCCCCCCceeccCCC
Q psy11860 64 REFIYEFFPLQPEWQLLKTSI 84 (123)
Q Consensus 64 ~~fi~tHfP~d~~wQlL~~pi 84 (123)
+.||.+| |....-.|...|.
T Consensus 28 ~~FI~~H-~L~~~~~L~dApF 47 (82)
T 2kp6_A 28 RAFIDSH-PLPPRVPLPEAPF 47 (82)
T ss_dssp HHHHHHS-CCCTTSCSTTCTT
T ss_pred HHHHHhC-CCCCCCcccCCCC
Confidence 5799999 9888777666664
Done!