Query psy11860
Match_columns 123
No_of_seqs 108 out of 208
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 20:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11860.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11860hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6ia1 a.118.1.22 (A:1-82) Mg 24.9 10 0.00076 23.3 0.8 10 64-73 71-80 (82)
2 d1z3xa1 a.118.1.22 (A:1-87) GU 23.2 12 0.00086 23.3 0.8 10 64-73 76-85 (87)
3 d1d5ya1 a.4.1.8 (A:3-56) Rob t 15.4 42 0.0031 17.5 2.0 24 78-101 14-37 (54)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 13.8 37 0.0027 17.3 1.3 11 84-94 12-22 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 10.6 51 0.0037 16.8 1.2 11 84-94 13-23 (36)
6 d1z6ba1 d.38.1.6 (A:84-229) (3 9.7 60 0.0044 20.4 1.6 18 60-77 40-57 (146)
7 d1mkaa_ d.38.1.2 (A:) beta-Hyd 9.0 58 0.0042 21.4 1.4 17 60-76 60-76 (171)
8 d3b2ua2 g.3.9.1 (A:481-502) EG 8.8 49 0.0036 15.7 0.6 10 24-33 9-18 (26)
9 d1bl0a1 a.4.1.8 (A:9-62) MarA 8.4 64 0.0047 16.6 1.1 22 80-101 16-37 (54)
10 d1wg8a2 c.66.1.23 (A:5-108,A:2 8.2 58 0.0042 21.6 1.1 10 22-31 22-31 (182)
No 1
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=24.94 E-value=10 Score=23.26 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=8.9
Q ss_pred hhhHHhcCCC
Q psy11860 64 REFIYEFFPL 73 (123)
Q Consensus 64 ~~fi~tHfP~ 73 (123)
.+|+.+|||.
T Consensus 71 ~eFLq~~FP~ 80 (82)
T d1y6ia1 71 TTQLQRNYPT 80 (82)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHCCC
Confidence 5899999996
No 2
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.16 E-value=12 Score=23.26 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=8.9
Q ss_pred hhhHHhcCCC
Q psy11860 64 REFIYEFFPL 73 (123)
Q Consensus 64 ~~fi~tHfP~ 73 (123)
.+|+.+|||.
T Consensus 76 ~eFLq~~FP~ 85 (87)
T d1z3xa1 76 QAFLQQHYPQ 85 (87)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHCCC
Confidence 5899999996
No 3
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.35 E-value=42 Score=17.52 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=19.0
Q ss_pred eeccCCCCHHHHhcCCCCChHHHH
Q psy11860 78 QLLKTSISLRDFEELPFVRSLFFR 101 (123)
Q Consensus 78 QlL~~pis~~~f~~~p~~~~~FF~ 101 (123)
+++..|+|+++....-.+++..|.
T Consensus 14 ~~~~~~itl~~lA~~~~~S~~~l~ 37 (54)
T d1d5ya1 14 GHLDQPLSLDNVAAKAGYSKWHLQ 37 (54)
T ss_dssp TTSSSSCCCHHHHTTTSSCHHHHH
T ss_pred HccCCCCCHHHHHHHHCcCHHHHH
Confidence 345778999999998888877654
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.83 E-value=37 Score=17.31 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.8
Q ss_pred CCHHHHhcCCC
Q psy11860 84 ISLRDFEELPF 94 (123)
Q Consensus 84 is~~~f~~~p~ 94 (123)
||.++|..+|.
T Consensus 12 msr~eF~~LP~ 22 (35)
T d1yu8x1 12 MTRSAFANLPL 22 (35)
T ss_dssp SCHHHHHTSCH
T ss_pred CCHHHHHHCcH
Confidence 68888888875
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=51 Score=16.84 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=8.3
Q ss_pred CCHHHHhcCCC
Q psy11860 84 ISLRDFEELPF 94 (123)
Q Consensus 84 is~~~f~~~p~ 94 (123)
||.++|..+|.
T Consensus 13 msr~eF~~LP~ 23 (36)
T d1unda_ 13 ITRGQFAALPG 23 (36)
T ss_dssp SCHHHHHHSCH
T ss_pred cCHHHHHHCcH
Confidence 67788887774
No 6
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=9.71 E-value=60 Score=20.40 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=12.8
Q ss_pred ccChhhhHHhcCCCCCCc
Q psy11860 60 LTDPREFIYEFFPLQPEW 77 (123)
Q Consensus 60 lt~P~~fi~tHfP~d~~w 77 (123)
.+..+.|...|||.+|.+
T Consensus 40 v~~~e~~f~ghfp~~Pi~ 57 (146)
T d1z6ba1 40 VSTNEPFFNGHFPQKQIM 57 (146)
T ss_dssp CCTTSGGGGTSCTTSCCC
T ss_pred cCCCcceeecccCCccce
Confidence 344455668999999874
No 7
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]}
Probab=9.01 E-value=58 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=11.8
Q ss_pred ccChhhhHHhcCCCCCC
Q psy11860 60 LTDPREFIYEFFPLQPE 76 (123)
Q Consensus 60 lt~P~~fi~tHfP~d~~ 76 (123)
.+..+.|..-|||.+|.
T Consensus 60 v~~~ewff~gHFp~~Pv 76 (171)
T d1mkaa_ 60 INPDLWFFGCHFIGDPV 76 (171)
T ss_dssp CCTTSGGGGTTTTTSCC
T ss_pred cccccceecccccCcCc
Confidence 33445556789999985
No 8
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.77 E-value=49 Score=15.65 Aligned_cols=10 Identities=30% Similarity=0.694 Sum_probs=7.1
Q ss_pred ecccCCCccc
Q psy11860 24 QCNWGARHLD 33 (123)
Q Consensus 24 D~~Wgag~~~ 33 (123)
|+|||-+--+
T Consensus 9 egcwgpeprd 18 (26)
T d3b2ua2 9 EGCWGPEPRD 18 (26)
T ss_dssp TCBSSSSGGG
T ss_pred CcccCCCCCc
Confidence 7899976543
No 9
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=8.45 E-value=64 Score=16.64 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=16.5
Q ss_pred ccCCCCHHHHhcCCCCChHHHH
Q psy11860 80 LKTSISLRDFEELPFVRSLFFR 101 (123)
Q Consensus 80 L~~pis~~~f~~~p~~~~~FF~ 101 (123)
+..++++++..+.-.+++..|.
T Consensus 16 ~~~~~tl~~lA~~~~~s~~~l~ 37 (54)
T d1bl0a1 16 LESPLSLEKVSERSGYSKWHLQ 37 (54)
T ss_dssp TTSCCCCHHHHHHSSSCHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHH
Confidence 4568888888888888776654
No 10
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}
Probab=8.18 E-value=58 Score=21.61 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=9.0
Q ss_pred eeecccCCCc
Q psy11860 22 LLQCNWGARH 31 (123)
Q Consensus 22 LiD~~Wgag~ 31 (123)
+||||-|.|.
T Consensus 22 ~vD~T~G~GG 31 (182)
T d1wg8a2 22 YVDATLGGAG 31 (182)
T ss_dssp EEETTCTTSH
T ss_pred EEEeCCCCcH
Confidence 7999999994
Done!