RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11860
         (123 letters)



>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
           contains TGc (transglutaminase/protease-like) domain
           [Cell division and chromosome partitioning].
          Length = 521

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 56  DHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVM 115
             YFL  P + I    P + +WQ +K  + +     LP+V  +FF  GL     NT  + 
Sbjct: 286 HSYFLLAPNQMIATHVPEKDDWQFIKPDLDMPIVMALPWVSPVFFTLGLKLRKFNTSILH 345

Query: 116 YTD 118
             D
Sbjct: 346 LND 348


>gnl|CDD|226355 COG3835, CdaR, Sugar diacid utilization regulator [Transcription /
           Signal transduction mechanisms].
          Length = 376

 Score = 29.3 bits (66), Expect = 0.52
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 29  ARHLDSAKQVLKVGAKGKSDSLRYEYDDHYF 59
           AR  +SAK+ L+VG K K +S  Y Y+D   
Sbjct: 252 ARSYESAKKTLEVGLKRKPESRIYFYEDLRL 282


>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
          Length = 414

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)

Query: 48  DSLRYEYDDHYF-LTDP-------REFIYEFF 71
             LR E ++HYF LT+P       RE+  E  
Sbjct: 94  KYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125


>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
           helicase) [Intracellular trafficking and secretion].
          Length = 822

 Score = 26.8 bits (60), Expect = 3.8
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 15/44 (34%)

Query: 27  WGARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEF 70
              R+ D  KQ+L             EYDD   L D R+ IY  
Sbjct: 588 VEGRNFDIRKQLL-------------EYDD--VLNDQRKVIYAQ 616


>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
          Length = 744

 Score = 26.5 bits (58), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 60  LTDPREFIYEFFPLQPEWQLLKTSISLRDFEEL 92
           L   RE +YE F   P +    T+I+  D EE+
Sbjct: 505 LKIRREHLYESFEEDPGFFQFATAITSNDLEEI 537


>gnl|CDD|225028 COG2117, COG2117, Predicted subunit of
           tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Translation, ribosomal structure and biogenesis].
          Length = 198

 Score = 26.2 bits (58), Expect = 4.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 11  EDSKWVQTLNFLLQCNWGA-RHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYE 69
           ED   VQ +  LL   +   R L SA  +L+ G   K +   YE +  Y L +      +
Sbjct: 122 EDRLNVQYIRPLLGLGYKTIRRLVSAIFILEEGPSEKIEKADYEAELRYLLRERGTAPED 181

Query: 70  FFP 72
            FP
Sbjct: 182 IFP 184


>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
          Length = 830

 Score = 25.8 bits (58), Expect = 6.4
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 15/41 (36%)

Query: 29  ARHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYE 69
            R+ D  KQ+L             EYDD   + D R+ IY 
Sbjct: 618 GRNFDIRKQLL-------------EYDD--VMNDQRKVIYA 643


>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to
           Lactococcus lactis lacX.  Proteins similar to
           Lactococcus lactis lacX are uncharacterized members of
           aldose-1-epimerase superfamily. Aldose 1-epimerases or
           mutarotases are key enzymes of carbohydrate metabolism,
           catalyzing the interconversion of the alpha- and
           beta-anomers of hexose sugars such as glucose and
           galactose. This interconversion is an important step
           that allows anomer specific metabolic conversion of
           sugars. Studies of the catalytic mechanism of the best
           known member of the family, galactose mutarotase, have
           shown a glutamate and a histidine residue to be critical
           for catalysis; the glutamate serves as the active site
           base to initiate the reaction by removing the proton
           from the C-1 hydroxyl group of the sugar substrate, and
           the histidine as the active site acid to protonate the
           C-5 ring oxygen.
          Length = 288

 Score = 25.2 bits (56), Expect = 9.8
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 53  EYDDHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPFVR-SLFFRYGLYFPDTNT 111
           +++D+Y   +P+E   E  PL     LL     L   E    +   LF    L F +  +
Sbjct: 153 KFEDYYLEFEPKE-ELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKS 211

Query: 112 KAVMYTDQTGEY 123
           + V    +   +
Sbjct: 212 REVTLKSKKTGH 223


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,343,462
Number of extensions: 544366
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 21
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)