RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11860
         (123 letters)



>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
           HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
          Length = 479

 Score = 26.4 bits (59), Expect = 3.1
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 18/57 (31%)

Query: 51  RYEYDDHYFLT-------------DPREFIYEFFPL-----QPEWQLLKTSISLRDF 89
           R+EYDD  FL                   +    P+         ++L+   +    
Sbjct: 172 RFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQ 228


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 5.2
 Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 9/25 (36%)

Query: 85  SLRDFEELPFVRSLFFRYGLYFPDT 109
           +L+  +      SL     LY  D+
Sbjct: 21  ALKKLQA-----SL----KLYADDS 36


>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
           HEM 3QZ; 3.00A {Bos taurus}
          Length = 496

 Score = 24.9 bits (55), Expect = 9.0
 Identities = 4/33 (12%), Positives = 7/33 (21%), Gaps = 10/33 (30%)

Query: 51  RYEYDDHYFLT----------DPREFIYEFFPL 73
           + +   H F                 I +  P 
Sbjct: 181 KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPF 213


>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
           metabolism, structural genomics, structural genomics
           consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
           SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
          Length = 481

 Score = 24.8 bits (55), Expect = 9.2
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 13/35 (37%)

Query: 51  RYEYDDHYFLT-------------DPREFIYEFFP 72
           R+ Y+D  F                   F+Y  FP
Sbjct: 173 RFTYEDTDFQHMIELFSENVELAASASVFLYNAFP 207


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0803    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,903,443
Number of extensions: 98115
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 16
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)