BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11862
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEF--SKLPVFERL 68
R+VL+TG TGF+G+ L+ +LLR G++ L RA+ + RL + S P R
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 69 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAAN 128
KE A RL ++ GD + +LG+ L E V ++ + AA + E N
Sbjct: 134 FKELAA--DRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVN-AFPYHELFGPN 190
Query: 129 TRGTQRLLDIALKMK----KLVVSLDIG 152
GT L+ IAL K V + D+G
Sbjct: 191 VAGTAELIRIALTTKLKPFTYVSTADVG 218
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VLVTGG+G++G +LL++ D+ + LC +KR S LPV ERL +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR-----------SVLPVIERLGGKH 51
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
P +EGDI L + ++ + V + A S++ E +N
Sbjct: 52 PT------FVEGDIRNEALMTE----ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-- 99
Query: 127 ANTRGTQRLLDI--ALKMKKLVVS 148
N GT RL+ A +K + S
Sbjct: 100 -NVNGTLRLISAMRAANVKNFIFS 122
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDI 37
++++VTGG GF+G + + + PD+
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDV 31
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK 53
VLVTGG GF+G ++E LL ++ + L KR PK
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK 43
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 62 LPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFN 110
P++ RK+ P Q++ L + L +LG+KD+ L+ E V +V N
Sbjct: 369 FPMWIIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVN 417
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL----TPKARLAEFSKLPVF 65
+++L+TGG GF+G L + P KV +L + + + L F L F
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 66 --ERLRKEC--PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKL 117
E + + P L RL + D L + SD ML +E+ + N A L L
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAAV--SDTTMLNQELVMKTNYQAFLNL 122
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+L+TGG G +G L+E L +I + KR + P
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP------------------- 63
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 132
++ L +IEG + A L + D + + V + AA+ K + E+ A N +G+
Sbjct: 64 ---VAGLSVIEGSVTDAGLLERAFDSF----KPTHVVHSAAAYKDPDDWAEDAATNVQGS 116
Query: 133 QRLLDIALK 141
+ A K
Sbjct: 117 INVAKAASK 125
>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
pdb|2NM0|B Chain B, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
Length = 253
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 2 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLA--- 57
G V R + RSVLVTGG +G + R+ D G KV I R+ G P+ LA
Sbjct: 13 GLVPRSHMSRSVLVTGGNRGIGLA----IARAFADAGDKVAITYRS--GEPPEGFLAVKC 66
Query: 58 EFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEE 104
+ + E+ KE + ++L AN G+ LLM E
Sbjct: 67 DITDTEQVEQAYKEIEETHGPV-----EVLIANAGVTKDQLLMRMSE 108
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPD 36
R +L+TGG GF+G L+ ++ D
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSD 27
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 33/137 (24%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 71
+LVTGG GF+G + +LL PD+ ++ LT A + + RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS--LTYAGNRANLAPVDADPRLR-- 58
Query: 72 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQ-EEVSVVFNGAASLKLEAELKENVAA--- 127
+ GD I+D+ LL + V + + AA E+ + ++A
Sbjct: 59 ---------FVHGD-------IRDAGLLARELRGVDAIVHFAA----ESHVDRSIAGASV 98
Query: 128 ----NTRGTQRLLDIAL 140
N +GTQ LL A+
Sbjct: 99 FTETNVQGTQTLLQCAV 115
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPD 36
+LVTGG GF+G + +L PD
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPD 29
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 47 KRGLTPKARLAEFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVS 106
KRGLTP AR+ +S++ V + P + I+ + +A ++D D+ + E +
Sbjct: 271 KRGLTPLARIVSWSQVGVEPSIMGIGP-----IPAIKQAVTKAGWSLEDVDIFEINEAFA 325
Query: 107 VV 108
V
Sbjct: 326 AV 327
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 31/136 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSC-PDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 71
+LVTGG GF+G + +LL PD+ ++ LT A + + RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS--LTYAGNRANLAPVDADPRLR-- 58
Query: 72 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA---- 127
+ GDI A L L E+ V + E+ + ++A
Sbjct: 59 ---------FVHGDIRDAGL---------LARELRGV-DAIVHFAAESHVDRSIAGASVF 99
Query: 128 ---NTRGTQRLLDIAL 140
N +GTQ LL A+
Sbjct: 100 TETNVQGTQTLLQCAV 115
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSC 34
GD+A A +V + GG GF + +EKL+R
Sbjct: 337 GDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 369
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLRSC 34
GD+A A +V + GG GF + +EKL+R
Sbjct: 337 GDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 369
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 2 GDVARWYAGRSVLVTGGTGFMGKVLLEKLLR 32
GD+A A +V + GG GF + +EKL+R
Sbjct: 362 GDIANQLATDAVQILGGNGFNTEYPVEKLMR 392
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPD 36
+L+TGG GF+G ++ ++++ D
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD 26
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 45
+++L+TGGTG GK + K+L + + K+ + R
Sbjct: 21 NQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSR 55
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 11 RSVLVTGGTGFMGKVLLEKLL 31
+ +L+TGG GF+G L +KL+
Sbjct: 6 KRILITGGAGFVGSHLTDKLM 26
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 13 VLVTGGTGFMGKVLLEKLLRS 33
V VTGGTGF+G +++ LL +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLEN 24
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 13 VLVTGGTGFMGKVLLEKL 30
+ VTGGTGF+G+ ++E +
Sbjct: 5 IAVTGGTGFLGQYVVESI 22
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 84 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR---GTQRLLD 137
GD++Q I D D+ L +E + + ++ E ++NV R G +R L+
Sbjct: 212 GDLVQVVNSISDGDVNALVDEYESCYTXTPATQIHGEKRQNVLEAARIELGXKRFLE 268
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCP 35
S+ VTG TG +G ++++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCP 35
S+ VTG TG +G ++++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGL-TPKARL 56
++VTGG GF+G L++KL+ ++ V L +R P A L
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAEL 47
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 7 WYAGRSVLVTGGTGFMGKVLLEKLL 31
W A +VLVTGGTG +G + L+
Sbjct: 527 WDAAGTVLVTGGTGALGAEVARHLV 551
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 49
++VTGG GF+G L++KL+ ++ V I+ R G
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGG 39
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 11 RSVLVTGGTGFMGKVLLEKL 30
+ +L+TGG GF+G L +KL
Sbjct: 28 KRILITGGAGFVGSHLTDKL 47
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLL 31
A +V+V GG GF+G L+++LL
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLL 53
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 84 GDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR---GTQRLLD 137
GD++Q I D D+ L +E + + ++ E ++NV R G +R L+
Sbjct: 212 GDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLE 268
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
Length = 313
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 13 VLVTGGTGFMGKVLLEKLLRS 33
++VTGG GF+G +++KL S
Sbjct: 4 IVVTGGAGFIGSHVVDKLSES 24
>pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus
Hb8
pdb|2D1Y|B Chain B, Crystal Structure Of Tt0321 From Thermus Thermophilus
Hb8
pdb|2D1Y|C Chain C, Crystal Structure Of Tt0321 From Thermus Thermophilus
Hb8
pdb|2D1Y|D Chain D, Crystal Structure Of Tt0321 From Thermus Thermophilus
Hb8
Length = 256
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 8 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILC 44
+AG+ VLVTGG +G+ + + R G + LC
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFARE----GALVALC 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,826
Number of Sequences: 62578
Number of extensions: 146643
Number of successful extensions: 500
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 56
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)