RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11862
(152 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 125 bits (314), Expect = 1e-34
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 69
R+VL+TG TGF+G+ L+ +LLR G++ L RA+ + RL + E LR
Sbjct: 73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLR 132
Query: 70 KECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANT 129
RL ++ GD + +LG+ L E V ++ + AA + E N
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF-PYHELFGPNV 191
Query: 130 RGTQRLLDIALKMK 143
GT L+ IAL K
Sbjct: 192 AGTAELIRIALTTK 205
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 51.1 bits (123), Expect = 1e-08
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 35/138 (25%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 71
V G TG +G + + G + ++ R P +++ + L
Sbjct: 16 YAVLGATGLLGHHAARAIRAA----GHDLVLIHR------PSSQIQRLAYLEP------- 58
Query: 72 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKEN-VAANTR 130
++L + L + V A + VA+
Sbjct: 59 --------ECRVAEMLDH------AGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALG 104
Query: 131 GTQRLLDIALKM--KKLV 146
T L+ +++
Sbjct: 105 QTNPFYAACLQARVPRIL 122
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 46.2 bits (110), Expect = 6e-07
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 38/137 (27%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+LVTG G +G+V+ E+L + RLA+ S L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL-----------------RLADLSPL---------- 38
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANTRG 131
++ D + D++ + + + + + +E ++ + N G
Sbjct: 39 DPAGPNEECVQCD-------LADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIG 90
Query: 132 TQRLLDIALK--MKKLV 146
L + A ++V
Sbjct: 91 LYNLYEAARAHGQPRIV 107
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 46.2 bits (110), Expect = 7e-07
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 35/140 (25%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+LVTG +G +G L+ L K I + T
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK--KNVIASDIVQRDTG-------------------- 39
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA--SLKLEAELKENVAANTR 130
+ I D+ + + + + + +F+ A S K E + N
Sbjct: 40 -----GIKFITLDVSNRDEIDR----AVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 131 GTQRLLDIA--LKMKKLVVS 148
GT +L+ A +++K+V+
Sbjct: 91 GTYNILEAAKQHRVEKVVIP 110
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 44.7 bits (106), Expect = 2e-06
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 30/132 (22%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+ + G G +G+ L ++L+ K G + + + + + E
Sbjct: 17 IAIIGAAGMVGRKLTQRLV---------------KDGSLGGKPVEK---FTLIDVFQPEA 58
Query: 73 PAQLS-RLHIIEGDILQANLGIKDSDLL--MLQEEVSVVFNGAASLKLEAELKENVAA-- 127
PA S + D+ +++ V+F+ AA + EAEL +
Sbjct: 59 PAGFSGAVDARAADLS-------APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRI 111
Query: 128 NTRGTQRLLDIA 139
N GT+ L D
Sbjct: 112 NLDGTRYLFDAI 123
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 43.8 bits (104), Expect = 5e-06
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 46/155 (29%)
Query: 8 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR--AKRGLTPKARLAEFSKLPVF 65
+++L+TGGTG GK + K+L + + K+ + R K+
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQ----------------- 60
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLGIKDSD-LLMLQEEVSVVFNGAASLK-------- 116
+ E R+ GD ++D + L E V + + AA+LK
Sbjct: 61 SEMAMEFND--PRMRFFIGD-------VRDLERLNYALEGVDICIH-AAALKHVPIAEYN 110
Query: 117 -LEAELKENVAANTRGTQRLLDIALKMK-KLVVSL 149
LE +K N+ G +++ LK V++L
Sbjct: 111 PLEC-IKTNIM----GASNVINACLKNAISQVIAL 140
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 43.4 bits (103), Expect = 6e-06
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 29/146 (19%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYIL----CRAKRGLTPKARLAEFSKLPVF 65
+++L+TGG GF+G L + P KV +L + L F L F
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA----SLKLEAEL 121
+ +I DI + + + +F+ AA ++ + +
Sbjct: 69 ------------KGEVIAADINNPLDLRR-----LEKLHFDYLFHQAAVSDTTMLNQELV 111
Query: 122 KENVAANTRGTQRLLDIALKMKKLVV 147
+ N + LL+IA K V+
Sbjct: 112 MKT---NYQAFLNLLEIARSKKAKVI 134
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 43.2 bits (101), Expect = 8e-06
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIG--KVYILCRAKRGLTPKARLAEFSKLPVFERL 68
L+ G TG +G L E L + G KVY + R R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR---------------------RT 40
Query: 69 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAAN 128
R + ++ ++ DI + L +V+ VF + + +EN AN
Sbjct: 41 RPAWHED-NPINYVQCDISDPD---DSQAKLSPLTDVTHVF--YVTWANRSTEQENCEAN 94
Query: 129 TRGTQRLLDIALKMKKLV--VSLDIG 152
++ + +LD + + +SL G
Sbjct: 95 SKMFRNVLDAVIPNCPNLKHISLQTG 120
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 42.7 bits (101), Expect = 1e-05
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 38/139 (27%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 70
+LVTG G +G + L + V + G E
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHE---VRLSDIVDLG--AAEAHEEI----------- 46
Query: 71 ECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAASLKLEAELKENVAANT 129
+ D+ D+ + L ++ + + + +E + + AN
Sbjct: 47 -----------VACDLA-------DAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 130 RGTQRLLDIA--LKMKKLV 146
G L + A L ++V
Sbjct: 88 IGAYNLYEAARNLGKPRIV 106
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 41.1 bits (97), Expect = 4e-05
Identities = 31/143 (21%), Positives = 44/143 (30%), Gaps = 42/143 (29%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFERL 68
V +TG G +G + E LL G KV +R E L
Sbjct: 24 VFITGICGQIGSHIAELLLER----GDKVVGIDNFATGRR-----------------EHL 62
Query: 69 RKECPAQLSRLHIIEGDILQANLGIKDSDL---LMLQEEVSVVFNGAASLKLEAELKENV 125
L +EG I D L L+ + V + AAS K + +
Sbjct: 63 -----KDHPNLTFVEGSI-------ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT 110
Query: 126 AANTRGTQRLLDIALKM--KKLV 146
N G ++ A K + V
Sbjct: 111 LTNCVGGSNVVQAAKKNNVGRFV 133
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 40.6 bits (96), Expect = 5e-05
Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 51/143 (35%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 71
+ VTGGTGF+G+ ++E + G IL R+ E+
Sbjct: 5 IAVTGGTGFLGQYVVESIKND----GNTPIILTRSIGN--KAINDYEY------------ 46
Query: 72 CPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENV 125
D DL+ +V V + AA +
Sbjct: 47 ----------RVSDY-------TLEDLINQLNDVDAVVHLAATRGSQGKI-------SEF 82
Query: 126 AANTRGTQRLLDIALK--MKKLV 146
N TQ L D + + +V
Sbjct: 83 HDNEILTQNLYDACYENNISNIV 105
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 40.2 bits (94), Expect = 7e-05
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR 45
+SV + G +G G+VLL+++L KV ++ R
Sbjct: 19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 40.0 bits (94), Expect = 9e-05
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPK 53
+ VL+ G TG G+ LL+++L P + KV R P+
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPR 47
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 39.7 bits (93), Expect = 2e-04
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 35/160 (21%)
Query: 4 VARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARL-----AE 58
+ + LV GG G S IG+ + + P+ +L +E
Sbjct: 29 LQSVVSQSRFLVLGGAG------------S---IGQA--VTKEIFKRNPQ-KLHVVDISE 70
Query: 59 FSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA----- 113
+ + + +R DI + + V N +A
Sbjct: 71 NNMVELVRDIRSSFGYINGDFQTFALDIGSIEY----DAFIKADGQYDYVLNLSALKHVR 126
Query: 114 SLKLEAELKENVAANTRGTQRLLDIALKM--KKLV-VSLD 150
S K L + N T + + ++ KK VS D
Sbjct: 127 SEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVSTD 166
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 38.8 bits (91), Expect = 3e-04
Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 44/148 (29%)
Query: 8 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYI---LCRAKRGLTPKARLAEFSKLPV 64
A +V+V GG GF+G L+++LL + +V++ L A++
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK---------------- 71
Query: 65 FERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKL 117
+ + E I D LL LQ+E VF+ A S+
Sbjct: 72 -INV-----PDHPAVRFSETS-------ITDDALLASLQDEYDYVFHLATYHGNQSSIH- 117
Query: 118 EAELKENVAANTRGTQRLLDIALKMKKL 145
+ + NT T +L + K+L
Sbjct: 118 --DPLADHENNTLTTLKLYERLKHFKRL 143
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 37.4 bits (87), Expect = 6e-04
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 36/137 (26%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+++ G +GF+G LL + L RG A R ++
Sbjct: 7 IVLIGASGFVGSALLNEALN---------------RGFEVTA----------VVRHPEKI 41
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 132
+ L + + D+ + ++ + + V + ++ +
Sbjct: 42 KIENEHLKVKKADVSSLD------EVCEVCKGADAVISAFNPGWNNPDI---YDETIKVY 92
Query: 133 QRLLDIALKM--KKLVV 147
++D K + ++
Sbjct: 93 LTIIDGVKKAGVNRFLM 109
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 37.1 bits (87), Expect = 0.001
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 42/146 (28%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFER 67
+L+TGG G +G L+E L G ++ + KR + P
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ----GHEILVIDNFATGKREVLPPVAGLSV-------- 69
Query: 68 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAELKEN 124
IEG + D+ LL + + V + AA+ K + E+
Sbjct: 70 --------------IEGSVT-------DAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED 108
Query: 125 VAANTRGTQRLLDIALKM--KKLVVS 148
A N +G+ + A K K+L+
Sbjct: 109 AATNVQGSINVAKAASKAGVKRLLNF 134
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 36.9 bits (86), Expect = 0.001
Identities = 34/149 (22%), Positives = 49/149 (32%), Gaps = 40/149 (26%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFE 66
+ L+TG GF+G LLE LL+ KV + L E L +
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKL----DQKVVGLDNFATGHQ-----RNLDEVRSLVSEK 78
Query: 67 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEA 119
Q S I+GDI + D V V + AA S+
Sbjct: 79 --------QWSNFKFIQGDIR-------NLDDCNNACAGVDYVLHQAALGSVPRSIN--- 120
Query: 120 ELKENVAANTRGTQRLLDIA--LKMKKLV 146
+ + A N G +L A K++
Sbjct: 121 DPITSNATNIDGFLNMLIAARDAKVQSFT 149
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.4 bits (84), Expect = 0.002
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 70
+L+ G TG++G+ + + L ++L R + +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQLLESF-------- 53
Query: 71 ECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTR 130
+ S +I+ G I + L+ + V VV + SL++E+++ A
Sbjct: 54 ----KASGANIVHGSIDDH------ASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV 103
Query: 131 GTQR 134
GT +
Sbjct: 104 GTVK 107
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 36.0 bits (84), Expect = 0.002
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 53/149 (35%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYI---LCRAKRG-LTPKARLAEFSKLPVFERL 68
++VTGG GF+G +++KL S ++ + L + ARL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSES----NEIVVIDNLSSGNEEFVNEAARL------------ 47
Query: 69 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVA-- 126
++ D+ D+ + V++ AA+ +++
Sbjct: 48 -------------VKADLA-------ADDIKDYLKGAEEVWHIAAN----PDVRIGAENP 83
Query: 127 -----ANTRGTQRLLDIALKM--KKLVVS 148
N T RLL+ K ++V +
Sbjct: 84 DEIYRNNVLATYRLLEAMRKAGVSRIVFT 112
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 35.7 bits (83), Expect = 0.003
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+L+ G G +G L +KL + G + + +RK
Sbjct: 5 ILIIGACGQIGTELTQKLRK---LYGTENV---------------------IASDIRKLN 40
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAA--NTR 130
++ + L + L+ +++ ++ AA L AE A N
Sbjct: 41 TDVVNSGPFEVVNALD----FNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMN 96
Query: 131 GTQRLLDIA--LKMKKLV 146
+L++A K+KK+
Sbjct: 97 SLFHVLNLAKAKKIKKIF 114
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 35.8 bits (82), Expect = 0.003
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSK 61
VL+ G TGF+G+ + L + YIL R KA++ + +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALE 58
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 35.7 bits (82), Expect = 0.003
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPV 64
+L+ GGTG++G +++ L+ Y+ R + L EF L
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHP---TYVFTR--PNSSKTTLLDEFQSLGA 60
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 35.6 bits (82), Expect = 0.003
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 8 YAGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFE 66
+ G+ V VTG TGF G L L +G V LT + F
Sbjct: 7 WQGKRVFVTGHTGFKGGWLSLWLQT----MGATVKGY-----SLTAPTVPSLFETA---- 53
Query: 67 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAA-SLKLEA--E 120
R+ + GD I+D + L + + + +VF+ AA L + E
Sbjct: 54 RVAD-------GMQSEIGD-------IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSE 99
Query: 121 LKENVAANTRGTQRLLDIALKMKKLVVSL 149
E + N GT LL+ + + +
Sbjct: 100 PVETYSTNVMGTVYLLEAIRHVGGVKAVV 128
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 35.3 bits (82), Expect = 0.004
Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 60/160 (37%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG--------LTP--KARLAEF 59
++ L+TG GF+G LLEKLL K + + L E
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLL---------------KLNQVVIGLDNFSTGHQYNLDEV 69
Query: 60 SKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA----- 113
L E Q SR IEGD I+D + + V V + AA
Sbjct: 70 KTLVSTE--------QWSRFCFIEGD-------IRDLTTCEQVMKGVDHVLHQAALGSVP 114
Query: 114 -SLKLEAELKEN----VAANTRGTQRLLDIA--LKMKKLV 146
S+ + A N G +L A +++
Sbjct: 115 RSI-------VDPITTNATNITGFLNILHAAKNAQVQSFT 147
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 35.3 bits (81), Expect = 0.004
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKL 62
+++ GGTG++GK ++ L +I R + + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQLREEF 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.005
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 60/156 (38%)
Query: 15 VTGGTGFMGKVLLEKLLRSC----PDIGKVYI--------------------LCRAKRGL 50
++ + + ++ + P +V I L R
Sbjct: 341 ISN----LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 51 TPKARL----AEFSK---------LPVFER-----LRKECPAQLSRLHIIEGDILQANLG 92
+ L FS+ LPV L PA +I D+++ N+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV---PAS----DLINKDLVKNNVS 449
Query: 93 IKDSDLLMLQEEVSV--VFNGAASLKLEAELKENVA 126
D+ ++ V F+G+ L + E +
Sbjct: 450 FNAKDI-----QIPVYDTFDGSDLRVLSGSISERIV 480
Score = 28.1 bits (62), Expect = 1.5
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 33/137 (24%)
Query: 26 LLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK---ECP----AQLSR 78
L +L+R+ D KV+ +GL L S P + L CP QL+
Sbjct: 194 TLSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA- 247
Query: 79 LHIIEGDILQANLGIKDSDLLMLQEEVSVVFNG--AASLKLEAELKENVA-ANTRGTQRL 135
H + + LG +L + + G A +A ++ +
Sbjct: 248 -HYV---VTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---------IAETDSW--ESF 292
Query: 136 LDIALKMKKLVVSLDIG 152
K + V IG
Sbjct: 293 FVSVRKA--ITVLFFIG 307
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 34.5 bits (79), Expect = 0.007
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTP 52
VL+ GGTG++GK ++ + Y+L R +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNI 43
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 34.4 bits (80), Expect = 0.009
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 58/149 (38%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYIL------CRAKRGLTPKARLAEFSKLPVF 65
+L+TGG GF+G L L+ S G +V +L +F + PV
Sbjct: 10 ILITGGAGFIGGHLARALVAS----GEEVTVLDDLRVPPMIP-----PEGTGKFLEKPVL 60
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEA 119
E + E D+ +V +V++ A+ S K
Sbjct: 61 E--------------LEERDL----------------SDVRLVYHLASHKSVPRSFKQPL 90
Query: 120 ELKENVAANTRGTQRLLDIALKM--KKLV 146
+ +NV + LL + + K+V
Sbjct: 91 DYLDNV----DSGRHLLALCTSVGVPKVV 115
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 34.3 bits (79), Expect = 0.010
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 42/141 (29%)
Query: 13 VLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKLPVFE 66
VL+ G GF+G L E+LLR DIG ++ F P
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------------SDAISRFLNHP--- 45
Query: 67 RLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK---E 123
H +EGDI + I+ ++ VV A +
Sbjct: 46 -----------HFHFVEGDISIHSEWIEY-----HVKKCDVVLPLVAIATPIEYTRNPLR 89
Query: 124 NVAANTRGTQRLLDIALKMKK 144
+ R++ +K +K
Sbjct: 90 VFELDFEENLRIIRYCVKYRK 110
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 34.1 bits (78), Expect = 0.010
Identities = 22/135 (16%), Positives = 35/135 (25%), Gaps = 49/135 (36%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+++TG GF+GK L L
Sbjct: 3 IVITGAKGFVGKNLKADLT----STTDH-------------------------------- 26
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 132
HI E K+ +L + + + A + E + KE N
Sbjct: 27 -------HIFEVHRQ-----TKEEELESALLKADFIVHLAGVNRPEHD-KEFSLGNVSYL 73
Query: 133 QRLLDIALKMKKLVV 147
+LDI + K
Sbjct: 74 DHVLDILTRNTKKPA 88
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 33.9 bits (78), Expect = 0.015
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCR 45
V +TG G +G+ L +L G +V L R
Sbjct: 150 VAITGSRGLVGRALTAQLQTG----GHEVIQLVR 179
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 33.6 bits (77), Expect = 0.016
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 42/148 (28%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLRS------CPDIGKVYILCRAKRGLTPKARLAEFSKL 62
+ VL+ G GF+G L +++L + D+ RL + K
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ--------------TDRLGDLVKH 68
Query: 63 PVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELK 122
R+H EGDI ++ ++ V+ A +K
Sbjct: 69 E--------------RMHFFEGDITINKEWVEY-----HVKKCDVILPLVAIATPATYVK 109
Query: 123 ---ENVAANTRGTQRLLDIALKMKKLVV 147
+ ++ A+K K +V
Sbjct: 110 QPLRVFELDFEANLPIVRSAVKYGKHLV 137
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5
P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A*
3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 33.5 bits (77), Expect = 0.017
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAEFSKLPVFER 67
LVTGG +G ++ L R G V + R RG +L P F +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 60
Query: 68 L 68
L
Sbjct: 61 L 61
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 33.6 bits (77), Expect = 0.019
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 20/148 (13%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
V+V GG G+ G L + ++ V L R + +R+ +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLT-PIASIHDRISRWK 72
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAA------SLKLEAELKE 123
+ + GDI D + L E V + S+ +
Sbjct: 73 ALTGKSIELYVGDIC-------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVY 125
Query: 124 NVAANTRGTQRLLDIALKMKKLVVSLDI 151
N GT +L +K+ +
Sbjct: 126 TQHNNVIGTLNVLF---AIKEFGEECHL 150
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 33.0 bits (76), Expect = 0.027
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 9 AGRSVLVTGGTGFMG----KVLLEK 29
++ V GGTGF+ K+LL+K
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQK 32
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 33.0 bits (76), Expect = 0.028
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 26/140 (18%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERL 68
GR ++VTGG GF+G +++ L I + ++ K G T L + +
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDG-TKFVNLVDLNI------- 94
Query: 69 RKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVF-NGAASLKLEAELKENVAA 127
++ + D L + ++ +V +F GA S E + K +
Sbjct: 95 ---------ADYMDKEDFLIQIMAGEEF------GDVEAIFHEGACSSTTEWDGKYMMDN 139
Query: 128 NTRGTQRLLDIALKMKKLVV 147
N + ++ LL L+ + +
Sbjct: 140 NYQYSKELLHYCLEREIPFL 159
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 32.3 bits (73), Expect = 0.044
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 20/78 (25%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+ + G G + + L LL + + R +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDM--HITLYGRQL------------------KTRIPPE 47
Query: 73 PAQLSRLHIIEGDILQAN 90
R+ +IEG
Sbjct: 48 IIDHERVTVIEGSFQNPG 65
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.3 bits (74), Expect = 0.047
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 10 GRSVLVTGGTGFMG----KVLLEK 29
G VLVTG GF+ + LLE
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEH 34
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 32.2 bits (74), Expect = 0.048
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 10 GRSVLVTGGTGFMG----KVLLEK 29
+V VTG +GF+G LLE+
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLER 28
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 32.2 bits (74), Expect = 0.052
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 VLVTGGTGFMGKVLLEKLL 31
V VTGGTGF+G +++ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 31.9 bits (73), Expect = 0.059
Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 36/156 (23%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLPVFER 67
VLV GG G++G + LLR D V I L ++ + +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLR---DTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 68 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL--MLQEEV---SVV-FNGAASLKLEAE- 120
+ P + GD+ + D L + +VV + E
Sbjct: 60 DGPKPPWADRYAALEVGDVR-------NEDFLNGVFTRHGPIDAVVHM---CAFLAVGES 109
Query: 121 ----LK--ENVAANTRGTQRLLDIALK--MKKLVVS 148
LK +N N G RLL L K++ S
Sbjct: 110 VRDPLKYYDN---NVVGILRLLQAMLLHKCDKIIFS 142
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 31.9 bits (73), Expect = 0.060
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 13 VLVTGGTGFMGKVLLEKLLRS-----CPDIGK 39
+ +TG GF+ + +L D K
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKK 63
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.5 bits (71), Expect = 0.067
Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 39/127 (30%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+ + G TG G +LE+ RG A R +
Sbjct: 3 IGIIGATGRAGSRILEEAKN---------------RGHEVTA----------IVRNAGKI 37
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENVAANTRGT 132
++I++ DI D L L ++ VV S + +
Sbjct: 38 TQTHKDINILQKDIF-------DLTLSDLSDQNVVVDAYGIS-------PDEAEKHVTSL 83
Query: 133 QRLLDIA 139
L+ +
Sbjct: 84 DHLISVL 90
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.8 bits (72), Expect = 0.069
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRS 33
+L+ G TG +G+ ++ +++
Sbjct: 4 KILILGPTGAIGRHIVWASIKA 25
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 13 VLVTGGTGFMGKVLLEKLLR 32
++VTGG GF+G +++ L
Sbjct: 2 IIVTGGAGFIGSNIVKALND 21
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 31.0 bits (71), Expect = 0.12
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 57/153 (37%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIG-KVYI---LCRAKRG-LTPKARLAEFSKLPVFER 67
VLVTGG GF+G ++E LL G +V + L KR +
Sbjct: 3 VLVTGGAGFIGSHIVEDLLAR----GLEVAVLDNLATGKRENVPKGVPF----------- 47
Query: 68 LRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAELKEN 124
D+ D + + + + V + AA A +K +
Sbjct: 48 --------------FRVDLR-------DKEGVERAFREFRPTHVSHQAAQ----ASVKVS 82
Query: 125 VA-------ANTRGTQRLLDIALK--MKKLVVS 148
V N G LL+ + ++KLV +
Sbjct: 83 VEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFA 115
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 30.8 bits (70), Expect = 0.13
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 49/146 (33%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRS-----CPDI---GKVYILCRAKRGLTPKARLAEFSK 61
+ +L+TGG GF+G L +KL+ D G+ K + +
Sbjct: 27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-------------KRNVEHWIG 73
Query: 62 LPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGA--ASLKLEA 119
FE +I D+++ L EV +++ A AS
Sbjct: 74 HENFE--------------LINHDVVEP-----------LYIEVDQIYHLASPASPPNYM 108
Query: 120 ELK-ENVAANTRGTQRLLDIALKMKK 144
+ + NT GT +L +A ++
Sbjct: 109 YNPIKTLKTNTIGTLNMLGLAKRVGA 134
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 31.0 bits (71), Expect = 0.13
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 61/153 (39%)
Query: 13 VLVTGGTGFMGKVLLEKLLRS-----CPD---IGKVYILCRAKRGLTPKARLAEFSKLPV 64
++VTGG GF+G L++KL+ D G+ + + P A L
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR-------REFVNPSAEL-------- 47
Query: 65 FERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKEN 124
D+ D + VVF+ AA+ E++ +
Sbjct: 48 -----------------HVRDLK-------DYSWG-AGIKGDVVFHFAAN----PEVRLS 78
Query: 125 VA-------ANTRGTQRLLDIALKM--KKLVVS 148
N T +L+ A + + +V +
Sbjct: 79 TTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 111
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 30.6 bits (70), Expect = 0.14
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 31/137 (22%)
Query: 13 VLVTGGTGFMG-KVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKE 71
+LVTGG GF+G + + L + PD+ ++ LT A + +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS--LTYAGNRANLAPV--------- 51
Query: 72 CPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEAELKEN 124
RL + GDI D+ LL V + + AA S+ +
Sbjct: 52 --DADPRLRFVHGDIR-------DAGLLARELRGVDAIVHFAAESHVDRSIAGASVF--- 99
Query: 125 VAANTRGTQRLLDIALK 141
N +GTQ LL A+
Sbjct: 100 TETNVQGTQTLLQCAVD 116
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 30.6 bits (69), Expect = 0.16
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 12 SVLVTGGTGFMGKVLLEKLL 31
+VLVTG +G G+++ +KL
Sbjct: 6 TVLVTGASGRTGQIVYKKLK 25
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 30.0 bits (67), Expect = 0.22
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 13 VLVTGGTGFMGKVLLEKLLR 32
+ V G TG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 29.6 bits (67), Expect = 0.31
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 13 VLVTGGTGFMGKVLLEKLLR 32
+ + G TG +GK LL+ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 29.2 bits (66), Expect = 0.47
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 13 VLVTGGTGFMGKVLLEKLLR 32
VLV G G + + LL +L
Sbjct: 24 VLVVGANGKVARYLLSELKN 43
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein
synthesis; 1.98A {Coxiella burnetii}
Length = 255
Score = 29.0 bits (66), Expect = 0.51
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLG 92
L+K+ Q + I + D LQ +
Sbjct: 65 AFLQKKYN-QQKNITIYQNDALQFDFS 90
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 29.0 bits (66), Expect = 0.51
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 33/139 (23%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+LVTGG GF+G + +L PD ++ K L + A L
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPD---WEVINIDK--LGYGSNPANLKDL---------- 50
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEAELKENV 125
R ++GD+ D +L+ L +V V + AA S+ +
Sbjct: 51 -EDDPRYTFVKGDVA-------DYELVKELVRKVDGVVHLAAESHVDRSISSPEIF---L 99
Query: 126 AANTRGTQRLLDIALKMKK 144
+N GT LL+ +
Sbjct: 100 HSNVIGTYTLLESIRRENP 118
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.6 bits (64), Expect = 0.64
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 30/125 (24%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
VL+ G G + + ++ +L K+ + + +K+
Sbjct: 26 VLILGAGGQIARHVINQLA--------------DKQTIKQTLFARQPAKIHKPYP----- 66
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAASLKLEAELKENV-AANTRG 131
+ II GD+L L + +V+ L+ + + A
Sbjct: 67 ----TNSQIIMGDVLNHA------ALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACD 116
Query: 132 TQRLL 136
+RL+
Sbjct: 117 VKRLI 121
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 28.7 bits (65), Expect = 0.65
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 34/138 (24%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRK 70
++++VTGG GF+G + + + PD V++ K LT A +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDK--LTYAGNKANLEAILG------ 53
Query: 71 ECPAQLSRLHIIEGDILQANLGIKDSDLLM-LQEEVSVVFNGAA------SLKLEAELKE 123
R+ ++ GDI D++L+ L + + + AA SL +
Sbjct: 54 ------DRVELVVGDIA-------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPF-- 98
Query: 124 NVAANTRGTQRLLDIALK 141
+ N GT LL+ A K
Sbjct: 99 -IHTNFIGTYTLLEAARK 115
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 28.6 bits (65), Expect = 0.67
Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 63/157 (40%)
Query: 12 SVLVTGGTGFMG----KVLLEKLLRSCPDIG-KVYI---LCRAKRGLTPKARLAEFSKLP 63
S+L+ GG G++G K L+++ G V + L + A+F
Sbjct: 3 SILICGGAGYIGSHAVKKLVDE--------GLSVVVVDNLQTGHEDAITEG--AKF---- 48
Query: 64 VFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLL---MLQEEVSVVFNGAASLKLEAE 120
GD+ D L QE + V + AA L
Sbjct: 49 ------------------YNGDLR-------DKAFLRDVFTQENIEAVMHFAA-DSLVGV 82
Query: 121 -----LK--ENVAANTRGTQRLLDIALKM--KKLVVS 148
L+ N N G LL++ + K + S
Sbjct: 83 SMEKPLQYYNN---NVYGALCLLEVMDEFKVDKFIFS 116
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.0 bits (65), Expect = 0.68
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 2 GDVARWYAGRSVLVTGGTGFMG 23
A W +VL+TGG G +G
Sbjct: 251 AGAASWQPSGTVLITGGMGAIG 272
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.4 bits (64), Expect = 0.69
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 13 VLVTGGTGFMGKVLLEKLLR 32
+ + G TG G L + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 28.6 bits (65), Expect = 0.73
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 29/135 (21%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+LVTGG GF+G + +L+S I+ LT L +
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETY---KIINFDA--LTYSGNLNNVKSI---------- 71
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKLEAELKENVA 126
+ ++G+I L + ++ + +V V+ N AA S++
Sbjct: 72 -QDHPNYYFVKGEIQNGEL----LEHVIKERDVQVIVNFAAESHVDRSIENPIPF---YD 123
Query: 127 ANTRGTQRLLDIALK 141
N GT LL++ K
Sbjct: 124 TNVIGTVTLLELVKK 138
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.9 bits (65), Expect = 0.75
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 5 ARWYAGRSVLVTGGTGFMGKVL 26
W +VLVTGGTG +G +
Sbjct: 221 DEWKPTGTVLVTGGTGGVGGQI 242
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 28.6 bits (64), Expect = 0.82
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 5 ARWYAGRSVLVTGGTGFMGKVL 26
W A +VLVTG
Sbjct: 246 PWWQADGTVLVTGAEEPAAAEA 267
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 0.96
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 8 YAGRSVLVTG-GTGFMGKVLLEKLLR 32
+ + VL+TG G G +G +L+ LL+
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQ 499
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 2 GDVARWYAGRSVLVTGGTGFMG 23
G R SVLVTGGTG +G
Sbjct: 231 GSGKRPPVHGSVLVTGGTGGIG 252
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 28.2 bits (64), Expect = 1.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 12 SVLVTGGTGFMG 23
++LVTGG G++G
Sbjct: 7 TILVTGGAGYIG 18
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 28.2 bits (64), Expect = 1.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 12 SVLVTGGTGFMG 23
VLVTGG+G++G
Sbjct: 2 RVLVTGGSGYIG 13
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 28.2 bits (63), Expect = 1.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 11 RSVLVTGGTGFMG 23
+ VLVTGG G++G
Sbjct: 12 KIVLVTGGAGYIG 24
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.9 bits (63), Expect = 1.4
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 33/136 (24%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLRKEC 72
+L+TGG GF+G L L D+ L R L S L
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA----TDNLHWLSSLG--------- 50
Query: 73 PAQLSRLHIIEGDILQANLGIKDSDLLMLQEEVSVVFNGAA------SLKL-EAELKENV 125
+ GDI N + L+ + F+ A S+ + + NV
Sbjct: 51 -----NFEFVHGDIRNKND-VTR---LITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINV 101
Query: 126 AANTRGTQRLLDIALK 141
GT LL+ +
Sbjct: 102 ----GGTLNLLEAVRQ 113
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 10 GRSVLVTGGTGFMG 23
VLVTGG G++G
Sbjct: 2 AEKVLVTGGAGYIG 15
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.6 bits (62), Expect = 1.6
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 12 SVLVTGGTGFMGKVLLEKLLR 32
++++TG TG +G + + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIA 22
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli}
SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 27.5 bits (62), Expect = 1.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLG 92
RL+ P +L I + D + N G
Sbjct: 57 ARLQTH-PFLGPKLTIYQQDAMTFNFG 82
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRSCP 35
S+ VTG TG +G ++++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 27.1 bits (61), Expect = 2.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 66 ERLRKECPAQLSRLHIIEGDILQANLG 92
RL + L + GD L + G
Sbjct: 82 GRLEQRFG---ELLELHAGDALTFDFG 105
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 13 VLVTGGTGFMGKVLLEKLLRSCP 35
+ +TG TG +G ++E L+++ P
Sbjct: 2 IAITGATGQLGHYVIESLMKTVP 24
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 26.8 bits (60), Expect = 2.6
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 69
+ V++TG + +G L+ + + + SK +R+
Sbjct: 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIV 87
Query: 70 KECPAQLSRLHIIEGDILQANLGI-KDSDLLMLQEE 104
+E + R+ D L N G+ + + +E
Sbjct: 88 REGIERFGRI-----DSLVNNAGVFLAKPFVEMTQE 118
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 26.8 bits (59), Expect = 2.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLR 32
G+ +V GTG +G L
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAG 141
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 3.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCR-AKRGLTPKARLAE 58
R +VTGG +G + ++L + V + CR +G +L
Sbjct: 12 RRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKGHEAVEKLKN 58
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 26.5 bits (59), Expect = 3.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 66 ERLRKEC--PAQLSRLHIIEGDILQANLG 92
L K S+L ++ GD+L+ +L
Sbjct: 64 AELHKRVQGTPVASKLQVLVGDVLKTDLP 92
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 26.5 bits (59), Expect = 3.7
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 25/105 (23%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARL--------AEF 59
++V+ G +G +L++ K +++ T A L F
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVKR----NLKNFVILDRVENPTALAELKAINPKVNITF 59
Query: 60 SKLPV------FERLRKECPAQLSRLHIIEGDILQANLGI-KDSD 97
V ++L K+ QL + DIL GI D
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTV-----DILINGAGILDDHQ 99
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 26.8 bits (59), Expect = 3.8
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 5 ARWYAGRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRG 49
+S ++TGG G G L + L G ++ ++ G
Sbjct: 1879 TFCPPHKSYVITGGLGGFGLQLAQWLRLR----GAQKLVLTSRSG 1919
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 26.2 bits (58), Expect = 4.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 66 ERLRKECP-AQLSRLHIIEGDILQANLGIKD 95
++K C + L + EGD ++ D
Sbjct: 78 SEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.1 bits (58), Expect = 4.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLR 32
R VLV GG G +G ++
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRA 29
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.1 bits (58), Expect = 5.0
Identities = 9/85 (10%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTPKARLAEFSKLPVFERL 68
+++LV GG+G +G +++ + + + + S + +
Sbjct: 22 SKNILVLGGSGALGAEVVKFFKSK----SWNTISIDFRENPNADHSFTIKDSGEEEIKSV 77
Query: 69 RKECPAQLSRLHIIEGDILQANLGI 93
++ ++ ++ D G
Sbjct: 78 IEKINSKSIKV-----DTFVCAAGG 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 14/30 (46%)
Query: 116 KLEAELK----ENVAANTRGTQRLLDIALK 141
KL+A LK ++ A +A+K
Sbjct: 24 KLQASLKLYADDSAPA----------LAIK 43
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 25.9 bits (58), Expect = 6.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 13 VLVTGGTGFMG 23
+L+TGG GF+G
Sbjct: 3 ILITGGAGFIG 13
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 25.6 bits (57), Expect = 6.3
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 16 TGGTGFMGKVLLEKLLRSCPDIGKVYI 42
TGG GF+ ++++ KV +
Sbjct: 190 TGGVGFVSADMIKQHFSPPSSDIKVMM 216
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 26.2 bits (58), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 12 SVLVTGGTGFMGKVLLEKLLRS 33
VL+ G GF+G L E+LLR
Sbjct: 317 RVLILGVNGFIGNHLTERLLRE 338
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 25.7 bits (57), Expect = 6.8
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 66 ERLRKECPAQLSRLHIIEGDILQANL 91
K + + II GD L+ +L
Sbjct: 86 PYANKL-KELYNNIEIIWGDALKVDL 110
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 25.3 bits (56), Expect = 7.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLR 32
+ V+V GG G +G +LE +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKK 25
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 25.4 bits (56), Expect = 7.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 RSVLVTGGTGFMGKVLLEKLLRS 33
+ V+V GGTG G + LL
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLED 28
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 25.6 bits (55), Expect = 8.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKLLRSCPDI 37
A +SVL+ G+GF+ + L+ L S +
Sbjct: 2 ATKSVLM-LGSGFVTRPTLDVLTDSGIKV 29
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 25.2 bits (56), Expect = 8.4
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIG-KVYILCRAKRGLTP-KARLAEFSKLPVFER 67
RSVLVTGG +G + + G KV I R+ A + + E+
Sbjct: 21 SRSVLVTGGNRGIGLAIARAFADA----GDKVAITYRSGEPPEGFLAVKCDITDTEQVEQ 76
Query: 68 LRKECPAQLSRLHIIEGDILQANLGIKDSDLLM 100
KE + ++L AN G+ LLM
Sbjct: 77 AYKEIEETHGPV-----EVLIANAGVTKDQLLM 104
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 25.2 bits (56), Expect = 8.8
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 69
RSVLVTGG +G + ++L + + + + + +R
Sbjct: 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTH--RGSGAPKGLFGVEVDVTDSDAVDRAF 72
Query: 70 KECPAQLSRLHIIEGDILQANLGIKDSDLLM 100
+ ++L +N G+ LM
Sbjct: 73 TAVEEHQGPV-----EVLVSNAGLSADAFLM 98
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 25.6 bits (57), Expect = 8.8
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 10 GRSVLVTGGTGFMGKVLLEKLLRSCPDIGKVYILCRAKRGLTPKARLAEFSKLPVFERLR 69
G+ ++ GGTG + LL I + K+ L + + E L
Sbjct: 96 GKVPIIAGGTGLYIQSLLYNYAFEDESISEDK----MKQVKLKLKELEHLNNNKLHEYLA 151
Query: 70 KECPAQLSRLH 80
+H
Sbjct: 152 SFDKESAKDIH 162
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 24.9 bits (55), Expect = 9.7
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 17/55 (30%)
Query: 13 VLVTGGTGFMG--------KVLLEKLL---------RSCPDIGKVYILCRAKRGL 50
VL+TGGTG L ++ + S +IG + RA G+
Sbjct: 73 VLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGV 127
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 25.3 bits (56), Expect = 9.8
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 9 AGRSVLVTGGTGFMGKVLLEKL-----------LRSCPDIGKVYILCRAKRGLTPKARLA 57
G+ +VTG T +G + L +I KV A+ G+ A
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 58 EFSKLPVFERLRKECPAQLSRLHIIEGDILQANLGIKDSDLLM 100
+ SK L Q+ R+ DIL N GI+ + L+
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRI-----DILVNNAGIQHTALIE 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.391
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,337,424
Number of extensions: 138058
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 136
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)