BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11864
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 40/189 (21%)
Query: 1 VALKFQS-FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
+ L F FEIE HD C YD++EIRDG + + ++G +CG PP I SSG+ L IKF S
Sbjct: 46 IVLNFNPHFEIEKHD-CKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTS 104
Query: 60 DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
D + Q GFS + YE+ G + C
Sbjct: 105 DYARQGAGFS---------------------------------LRYEIFKTGS---EDCS 128
Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSCEY 177
+PNGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L + C+Y
Sbjct: 129 KNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKY 188
Query: 178 DNLTVFSKI 186
D L ++ I
Sbjct: 189 DWLDIWDGI 197
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 1 VALKFQSFEIENHD-------QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKL 53
+ L+F F++E HD C YD+++I DG P+IG YCG K P +++SS L
Sbjct: 165 IILQFLIFDLE-HDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGIL 223
Query: 54 MIKFVSDGSVQKPGFSAIFMKEFDECALEDHGC 86
+ F +D +V K GFSA + E LE+ C
Sbjct: 224 SLTFHTDMAVAKDGFSARYYLVHQE-PLENFQC 255
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 10/75 (13%)
Query: 118 CGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQSS 174
CGG LN+ + G +TSP +P Y ++ C W + AP P +I LNF HF+IE ++
Sbjct: 6 CGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHD----- 60
Query: 175 CEYDNLTVFSKIGDS 189
C+YD + + + GDS
Sbjct: 61 CKYDFIEI--RDGDS 73
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPD--------IKSSGTK 52
+ L F F +E+ C YDYV++ + ++ T+CG + + S G+
Sbjct: 39 IKLYFMHFNLESSYLCEYDYVKVET----EDQVLATFCGRETTDTEQTPGQEVVLSPGSF 94
Query: 53 LMIKFVSDGSVQK--PGFSAIFMK-EFDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
+ I F SD S ++ GF A +M + DEC E+ C+H C N +GGY CSC+ GY
Sbjct: 95 MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Query: 107 LHSDGKICLDACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
LH+D + C C L T G +TSP FP+ Y K+ C++ I + ++L F FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
Query: 165 IEGNNLFQSSCEYDNLTVFSKIG 187
IE + + C YD + + K+G
Sbjct: 215 IEDHP--EVPCPYDYIKI--KVG 233
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
LN G + SP +PD Y + W I P +RI L F HF++E + L CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYDYVK 60
Query: 182 V 182
V
Sbjct: 61 V 61
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G ++G +CG K P I + ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260
Query: 58 VSDGSVQKPGF 68
SD S + G+
Sbjct: 261 HSDNSGENRGW 271
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPD--------IKSSGTK 52
+ L F F +E+ C YDYV++ + ++ T+CG + + S G+
Sbjct: 39 IKLYFMHFNLESSYLCEYDYVKVET----EDQVLATFCGRETTDTEQTPGQEVVLSPGSF 94
Query: 53 LMIKFVSDGSVQK--PGFSAIFMK-EFDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
+ I F SD S ++ GF A +M + DEC E+ C+H C N +GGY CSC+ GY
Sbjct: 95 MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Query: 107 LHSDGKICLDACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
LH+D + C C L T G +TSP FP+ Y K+ C++ I + ++L F FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
Query: 165 IEGNNLFQSSCEYDNLTVFSKIG 187
IE + + C YD + + K+G
Sbjct: 215 IEDHP--EVPCPYDYIKI--KVG 233
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
LN G + SP +PD Y + W I P +RI L F HF++E + L CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYDYVK 60
Query: 182 V 182
V
Sbjct: 61 V 61
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G ++G +CG K P I + ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260
Query: 58 VSDGSVQKPGFSAIFMKEFDEC 79
SD S + G+ + +EC
Sbjct: 261 HSDNSGENRGWRLSYRAAGNEC 282
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGY------KLPPD--IKSSGTK 52
+ L F F +E +C YD+V++ G + ++ T CG + P + S G
Sbjct: 38 LRLYFTHFNLELSYRCEYDFVKLTSG----TKVLATLCGQESTDTERAPGNDTFYSLGPS 93
Query: 53 LMIKFVSDGSVQKP--GFSAIFMKE-FDEC--ALEDH-GCEHTCKNILGGYECSCKIGYE 106
L + F SD S +KP GF A + E DEC +L D C+H C LGGY CSC++GY
Sbjct: 94 LKVTFHSDYSNEKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYI 153
Query: 107 LHSDGKICLDACGG-ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
LH + C C G + +G L+SP +P Y K +C + I + I+L+F FD
Sbjct: 154 LHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFD 213
Query: 165 IEGNNLFQSSCEYDNLTV 182
+E + ++ C YD+L +
Sbjct: 214 VEMHP--EAQCPYDSLKI 229
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYD--NLTVFS 184
G L SP FP+ Y ++ W + APP +R+ L FTHF++E CEYD LT +
Sbjct: 9 GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLE----LSYRCEYDFVKLTSGT 64
Query: 185 KI 186
K+
Sbjct: 65 KV 66
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 1 VALKF-QSFEIENHD--QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
+ L F +SF++E H QC YD ++I+ D G +CG LPP I++ K+ I F
Sbjct: 204 ITLDFVESFDVEMHPEAQCPYDSLKIQT----DKREYGPFCGKTLPPRIETDSNKVTITF 259
Query: 58 VSDGSVQKPGF 68
+D S G+
Sbjct: 260 TTDESGNHTGW 270
>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|D Chain D, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|F Chain F, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 457
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 40/164 (24%)
Query: 3 LKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGS 62
L+F+ F +E+H CT DY+ + DG + +S ++ CG + PP I+SSG + IK +D
Sbjct: 274 LEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEG 333
Query: 63 VQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGIL 122
Q GF A + + TC+N++ I+
Sbjct: 334 QQGRGFKAEYRQ--------------TCENVV--------------------------IV 353
Query: 123 NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
N G L S +P+ Y +N+ C W I A ++ F FD+E
Sbjct: 354 NQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLE 397
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 1 VALKFQSFEIENHDQCTY-DYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
+A+ F +F +E Y D++EIRDG SP++G + G LPP I S KL +KF S
Sbjct: 155 IAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKS 214
Query: 60 DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
D + GFSA + DG CG
Sbjct: 215 DQIDTRSGFSAYW-------------------------------------DGSST--GCG 235
Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
G L T +GT SP++P Y + C W + + L F F +E +C D
Sbjct: 236 GNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLE----HHPNCTLDY 291
Query: 180 LTVF 183
L V+
Sbjct: 292 LAVY 295
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 39/166 (23%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ L F++F +E H CT DY+E+ D + S +G YCG +PP + SSG LM+ FV+D
Sbjct: 39 IHLMFETFHLEFHYNCTNDYLEVYDTDSETS--LGRYCGKSIPPSLTSSGNSLMLVFVTD 96
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
+ GF I YE S CL
Sbjct: 97 SDLAYEGF---------------------------------LINYEAISAATACLQDYTD 123
Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
L GT TSP+FP+ Y N CI+ I I+++FT+F +E
Sbjct: 124 DL----GTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLE 165
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
V F +F++E+H C+ DY+E+ DG +G YCG LPP ++ +KL + ++D
Sbjct: 387 VNYTFLAFDLEHHINCSTDYLELYDGPRQ----MGRYCGVDLPPPGSTTSSKLQVLLLTD 442
Query: 61 GSVQK 65
G ++
Sbjct: 443 GVGRR 447
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
CG IL GT+ SP P++Y C W I+ P + I L F F +E F +C
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLE----FHYNCTN 56
Query: 178 DNLTVF 183
D L V+
Sbjct: 57 DYLEVY 62
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 46/181 (25%)
Query: 8 FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPG 67
F++E+ D C YDYVE+ DG + G +CG P + SSG L IKFVSD G
Sbjct: 57 FDLEDRD-CKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAG 115
Query: 68 FSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNG 127
FS I YE+ G C P G
Sbjct: 116 FS---------------------------------IRYEIFKRGP----ECSQNYTAPTG 138
Query: 128 TLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNN-----LFQSSCEYDNLTV 182
+ SP FP+ Y + C + I AP I L F FD+E ++ +F C YD L +
Sbjct: 139 VIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMF---CRYDRLEI 195
Query: 183 F 183
+
Sbjct: 196 W 196
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1 VALKFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
+ L+F+SF++E C YD +EI DG P IG YCG K P I+SS L
Sbjct: 167 IILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGVLS 226
Query: 55 IKFVSDGSVQKPGFSA 70
+ F +D ++ K GFSA
Sbjct: 227 MVFYTDSAIAKEGFSA 242
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 116 DACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQ 172
D CGG + N G LTSP +P Y ++ C W I AP P RI +NF HFD+E +
Sbjct: 7 DKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRD--- 63
Query: 173 SSCEYDNLTV 182
C+YD + V
Sbjct: 64 --CKYDYVEV 71
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIK--------SSGTK 52
+ L F F++E C YD+V++ G + ++ T CG + + S G+
Sbjct: 42 LRLYFTHFDLELSHLCEYDFVKLSSG----AKVLATLCGQESTDTERAPGKDTFYSLGSS 97
Query: 53 LMIKFVSDGSVQKP--GFSAIFMKE-FDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
L I F SD S +KP GF A + E DEC + E C+H C N LGG+ CSC+ GY
Sbjct: 98 LDITFRSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Query: 107 LHSDGKIC 114
LH + + C
Sbjct: 158 LHRNKRTC 165
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
G L SP FP Y ++ W + APP YR+ L FTHFD+E ++L CEYD + + S
Sbjct: 13 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHL----CEYDFVKLSS 66
>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6
Length = 149
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ L F F++E+ C DYVEI D + +G YCG +LP DI S+G + +KF+SD
Sbjct: 45 IHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSD 104
Query: 61 GSVQKPGFSAIFM 73
SV GF ++
Sbjct: 105 ASVTAGGFQIKYV 117
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
CGG+ P SP FP+ Y N+ C W I RI L+F FD+E
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLE 55
>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-1
Length = 450
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1 VALKFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
+ L+F+SF++E C YD +EI DG P IG YCG K P I+SS L
Sbjct: 49 IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILS 108
Query: 55 IKFVSDGSVQKPGFSA 70
+ F +D ++ K GFSA
Sbjct: 109 MVFYTDSAIAKEGFSA 124
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE--GNNLFQSSC 175
C TP+G + SP FP+ Y + C + + AP I L F FD+E N C
Sbjct: 11 CSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFC 70
Query: 176 EYDNLTVFSKIGD 188
YD L ++ D
Sbjct: 71 RYDRLEIWDGFPD 83
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 1 VALKFQSFEIENHD-------QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKL 53
+ L+F F++E HD C YD+++I DG P+IG YCG K P +++SS L
Sbjct: 46 IILQFLIFDLE-HDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGIL 104
Query: 54 MIKFVSDGSVQKPGFSAIFMKEFDECALEDHGC 86
+ F +D +V K GFSA + E LE+ C
Sbjct: 105 SLTFHTDMAVAKDGFSARYYLVHQE-PLENFQC 136
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSC 175
C +PNGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L + C
Sbjct: 8 CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDC 67
Query: 176 EYDNLTVFSKI 186
+YD L ++ I
Sbjct: 68 KYDWLDIWDGI 78
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYK--------LPPDIKSSGTK 52
+ L F +IE + C YD V+I G + G CG + + + + K
Sbjct: 35 IHLYFTHLDIELSENCAYDSVQIISGDTEE----GRLCGQRSSNNPHSPIVEEFQVPYNK 90
Query: 53 LMIKFVSDGSVQK--PGFSAIFMK-EFDECA-LEDHGCEHTCKNILGGYECSCKIGYELH 108
L + F SD S ++ GF+A ++ + +EC D C H C N +GGY CSC Y LH
Sbjct: 91 LQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLH 150
Query: 109 SDGKIC 114
D K C
Sbjct: 151 DDMKNC 156
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
G + SP++P Y W+I P Y I L FTH DIE +C YD++ + S
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE----LSENCAYDSVQIIS 59
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+ CA E+ GC H C G C+C IG+EL SD K C+
Sbjct: 571 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 609
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 77 DECALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGT------ 128
+ C +++ GC H C + Y+C+C G +L +GK C D +L T
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 324
Query: 129 LTSPSFPDLYIK 140
L +P F D+ ++
Sbjct: 325 LDTPDFTDIVLQ 336
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+ CA E+ GC H C G C+C IG+EL SD K C+
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 77 DECALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGT------ 128
+ C +++ GC H C + Y+C+C G +L +GK C D +L T
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 332
Query: 129 LTSPSFPDLYIK 140
L +P F D+ ++
Sbjct: 333 LDTPDFTDIVLQ 344
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G S + G +CG K P I + + I F
Sbjct: 43 VTLQFEDIFDIEDHPEVPCPYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILF 98
Query: 58 VSDGSVQKPGF 68
SD S + G+
Sbjct: 99 RSDNSGENRGW 109
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 115 LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQS 173
++ G + GT+TSP +P+ Y K+ C + I + ++L F FDIE +
Sbjct: 2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPC 61
Query: 174 SCEYDNLTVFSKIGDSF 190
+Y + SK+ F
Sbjct: 62 PYDYIKIKAGSKVWGPF 78
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+ C + + GC C+ I G +C+C GY L DG+ C D
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD 43
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 74 KEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
++ +ECA E + C C N G ++C C+ GYEL D + C
Sbjct: 42 QDVNECAEEGY-CSQGCTNSEGAFQCWCEAGYELRPDRRSC 81
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 75 EFDECALEDHG--------CEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ DECA C+H C N +GGY CSC+ GYEL D C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 76 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 114
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 263 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 302
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 76 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 114
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 265 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 76 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 114
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 270 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 309
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ECA E + C C N G ++C C+ GYEL D + C
Sbjct: 2 NECAEEGY-CSQGCTNSEGAFQCWCEAGYELRPDRRSC 38
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGI 121
GF + + + DEC D C C N+ GGY+C C+ G++L K C A G I
Sbjct: 28 GFQLVAQRRCEDIDECQDPD-TCSQLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSI 83
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 31
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGI 121
GF + + + DEC D C C N+ GGY+C C+ G++L K C A G I
Sbjct: 68 GFQLVAQRRCEDIDECQDPD-TCSQLCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSI 123
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 71
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 35 GTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEH-TCKNI 93
GT C ++ P + +S K++ G +P + +++ DEC C+ C N
Sbjct: 86 GTPC--EMCPAVNTSEYKILCP---GGEGFRPNPITVILEDIDECQELPGLCQGGKCINT 140
Query: 94 LGGYECSCKIGYELHSDGKIC 114
G ++C C GY L+ D ++C
Sbjct: 141 FGSFQCRCPTGYYLNEDTRVC 161
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 340 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 389
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 343
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYE 106
DEC++ + TCKN++GG+EC+C+ G+E
Sbjct: 45 DECSVGNPCGNGTCKNVIGGFECTCEEGFE 74
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 44 PDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEH-TCKNILGGYECSCK 102
P + +S K++ G +P + +++ DEC C+ C N G ++C C
Sbjct: 93 PAVNTSEYKILCP---GGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCP 149
Query: 103 IGYELHSDGKIC 114
GY L+ D ++C
Sbjct: 150 TGYYLNEDTRVC 161
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 322 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 325
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICLDACGGIL 122
C +++ GC H C + Y+C+C G +L +GK C D +L
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 312
>pdb|1SFP|A Chain A, Crystal Structure Of Acidic Seminal Fluid Protein (Asfp)
At 1.9 A Resolution: A Bovine Polypeptide From The
Spermadhesin Family
Length = 114
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGN 168
CGGIL +G + + Y C+W I PP+Y + ++ + + N
Sbjct: 10 CGGILKEESGVIAT-----YYGPKTNCVWTIQMPPEYHVRVSIQYLQLNCN 55
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 74 KEFDECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICLD 116
K+ DEC+L+ C CKNI G +EC C GY + K C D
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED 44
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 74 KEFDECALEDHGCEHTCKNILGGYECSC--KIGYELHSDGKIC 114
++ DEC+ ++ C C N GGY C C K G++L D K C
Sbjct: 43 EDIDECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 57 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC + C ++ GYEC C G++L
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 65 KPGFSAIFMKE---FDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
+ G+ F + F C+L++ GC H C +G CSC GY+L D
Sbjct: 40 RSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDD 88
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 65 KPGFSAIFMKE---FDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
+ G+ F + F C+L++ GC H C +G CSC GY+L D
Sbjct: 33 RSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDD 81
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 57 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 60
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 85 GCEHTCKNILGGYECSCKIGYELHSDGKICL--DACG-GILNTPNGTLTSPSFPDL 137
GC+H C Y CSC GY L D K C+ D C G+L + +P DL
Sbjct: 12 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK---RAPDLQDL 64
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 79 CALEDHGCEHTC--KNILGGYECSCKIGYELHSDGKICLDA 117
C +++ GC H C + Y+C+C G +L +GK C D
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 74 KEFDECALEDHGCEHT--CKNILGGYECSCKIGY 105
++ DEC+L + CEH C N LG +EC C GY
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 36
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 74 KEFDECALEDHGCEHT--CKNILGGYECSCKIGY 105
++ DEC+L + CEH C N LG +EC C GY
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 34
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 30 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 33
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 33 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC + C ++ GYEC C G++L
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQL 36
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 30 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 33
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 85 GCEHTCKNILGGYECSCKIGYELHSDGKICL--DACG-GILNTPNGTLTSPSFPDL 137
GC+H C Y CSC GY L D K C+ D C G+L + +P DL
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK---RAPDLQDL 105
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 67 GFSAIFMK---EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
GF + + + DEC D C C N+ GGY+C C+ G++L K C
Sbjct: 33 GFQLVAQRRCEDIDECQDPDT-CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 36
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ GC+ C+ CSC GY L D K C+
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCV 37
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 38 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL 107
+EC + GC H C ++ GYEC C G++L
Sbjct: 46 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL 76
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 78 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 74 KEFDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL 115
++ DEC + C++ C N G ++C C G L + G+ICL
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 74 KEFDECALEDHGCEHT--CKNILGGYECSCKIGYE 106
++ DEC+ H C+ + C N +G Y C C+ G++
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 7 SFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYK 41
+ +++H + T + EI DG PD ++ ++ GY+
Sbjct: 352 ALHLKHHGRATSVWDEIGDGGLPDGALVASWRGYE 386
>pdb|3RE3|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
Length = 162
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 93 ILGGYECSCKIGYELHSDGKICLDA-CGGIL 122
I+GG E + +G E HSDG + + A C IL
Sbjct: 25 IIGGVEIAYHLGLEAHSDGDVLIHALCDAIL 55
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 41
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 43
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 52
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 40
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 37
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 39
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 38
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 89 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 125
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 40 LFTRKL--CSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACI 82
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
C+L++ C+ C CSC GY L +GK C+
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 38 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 40 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 82
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 39 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
+F ++ C+L++ C+ C CSC GY L +GK C+
Sbjct: 39 LFTRKL--CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 81
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 26.9 bits (58), Expect = 7.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 158 LNFTHFDIEGNNLFQSSCEYDNLTVFSKIG 187
L+ T + G N FQ +C++ NLT F +G
Sbjct: 97 LSATSLYVCGTNAFQPACDHLNLTSFKFLG 126
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 79 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKIC 114
C E+ GCE C + G C C GY L +DG C
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,595,887
Number of Sequences: 62578
Number of extensions: 283237
Number of successful extensions: 624
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 172
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)