Query psy11864
Match_columns 193
No_of_seqs 236 out of 1405
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 20:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.8 1.4E-18 3.1E-23 113.6 5.8 68 118-189 1-68 (110)
2 cd00041 CUB CUB domain; extrac 99.7 8.5E-18 1.8E-22 110.3 7.6 67 118-188 1-68 (113)
3 smart00042 CUB Domain first fo 99.7 4.3E-17 9.3E-22 105.2 7.3 57 127-187 1-57 (102)
4 KOG4586|consensus 99.6 2.2E-16 4.8E-21 101.3 4.6 74 1-74 79-153 (156)
5 PF00431 CUB: CUB domain CUB d 99.5 2.5E-14 5.4E-19 93.3 7.3 72 1-72 39-110 (110)
6 cd00041 CUB CUB domain; extrac 99.5 1.1E-13 2.3E-18 90.7 8.1 73 1-73 40-112 (113)
7 smart00042 CUB Domain first fo 99.5 1.3E-13 2.7E-18 88.9 8.2 72 1-72 30-102 (102)
8 KOG4292|consensus 99.4 1.3E-12 2.9E-17 101.4 10.2 171 15-189 101-359 (454)
9 KOG4586|consensus 99.1 1.6E-10 3.6E-15 74.5 5.2 60 123-186 46-106 (156)
10 PF14670 FXa_inhibition: Coagu 98.6 6.3E-08 1.4E-12 49.4 3.1 36 79-114 1-36 (36)
11 KOG4292|consensus 98.2 3.4E-06 7.3E-11 66.4 5.1 69 117-188 168-237 (454)
12 PF05428 CRF-BP: Corticotropin 98.1 0.00013 2.8E-09 54.4 11.9 136 1-187 93-252 (311)
13 PF07645 EGF_CA: Calcium-bindi 97.8 5.2E-05 1.1E-09 40.2 3.8 38 76-113 2-41 (42)
14 PF12662 cEGF: Complement Clr- 97.2 0.00021 4.6E-09 32.7 1.6 21 96-116 1-21 (24)
15 cd01475 vWA_Matrilin VWA_Matri 96.2 0.0047 1E-07 45.4 3.1 38 75-112 186-223 (224)
16 PF02408 CUB_2: CUB-like domai 96.2 0.019 4.2E-07 37.9 5.7 43 137-189 37-79 (120)
17 smart00179 EGF_CA Calcium-bind 94.7 0.06 1.3E-06 27.3 3.3 29 77-106 3-33 (39)
18 smart00181 EGF Epidermal growt 93.0 0.17 3.8E-06 25.0 3.0 25 84-108 6-31 (35)
19 PF12947 EGF_3: EGF domain; I 92.3 0.13 2.9E-06 26.0 2.0 27 81-107 3-31 (36)
20 PF05428 CRF-BP: Corticotropin 91.8 0.63 1.4E-05 35.3 5.8 39 139-185 76-115 (311)
21 PF00008 EGF: EGF-like domain 87.5 1 2.2E-05 22.0 2.8 19 89-107 11-30 (32)
22 cd00053 EGF Epidermal growth f 84.7 1.7 3.6E-05 21.0 2.9 21 88-108 12-32 (36)
23 PF12661 hEGF: Human growth fa 83.0 0.95 2.1E-05 17.3 1.2 10 98-107 1-10 (13)
24 KOG4289|consensus 81.5 11 0.00023 35.6 8.1 44 65-108 1227-1271(2531)
25 cd00054 EGF_CA Calcium-binding 81.3 2.8 6E-05 20.5 3.0 21 87-107 14-34 (38)
26 PF09064 Tme5_EGF_like: Thromb 70.3 5.3 0.00011 19.8 2.0 14 97-110 18-31 (34)
27 PF12946 EGF_MSP1_1: MSP1 EGF 46.6 37 0.0008 17.3 2.7 22 88-109 11-33 (37)
28 PF13978 DUF4223: Protein of u 45.4 11 0.00024 20.6 0.8 9 173-181 29-37 (56)
29 KOG1214|consensus 40.3 30 0.00064 30.8 2.9 39 76-114 734-774 (1289)
30 PF13948 DUF4215: Domain of un 39.6 29 0.00062 18.6 1.9 23 100-122 3-25 (47)
31 PF05547 Peptidase_M6: Immune 39.3 1.2E+02 0.0026 26.4 6.3 22 50-71 431-454 (645)
32 KOG1214|consensus 36.1 37 0.0008 30.3 2.8 39 75-115 826-864 (1289)
33 KOG1215|consensus 34.6 47 0.001 29.9 3.4 42 75-116 669-710 (877)
34 KOG4260|consensus 29.4 50 0.0011 25.2 2.3 43 65-107 223-269 (350)
35 PF14380 WAK_assoc: Wall-assoc 29.0 63 0.0014 20.0 2.5 38 65-104 53-93 (94)
36 smart00166 UBX Domain present 27.2 1E+02 0.0022 18.3 3.1 21 142-162 3-23 (80)
37 PF00954 S_locus_glycop: S-loc 26.3 1.8E+02 0.0039 18.4 5.4 40 66-106 67-107 (110)
38 KOG0281|consensus 22.2 99 0.0021 24.7 2.8 41 141-187 438-478 (499)
39 KOG4795|consensus 21.4 1.4E+02 0.0031 22.3 3.3 25 142-166 45-69 (264)
40 PF08734 GYD: GYD domain; Int 20.2 1.7E+02 0.0037 18.1 3.1 13 177-189 46-58 (91)
41 KOG2689|consensus 20.0 1.9E+02 0.0041 22.2 3.8 34 129-162 194-229 (290)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.75 E-value=1.4e-18 Score=113.56 Aligned_cols=68 Identities=43% Similarity=0.870 Sum_probs=60.1
Q ss_pred CCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS 189 (193)
Q Consensus 118 C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~ 189 (193)
||+.+...+|.|+||+||..|+++.+|.|.|+++++++|.|+|..|+|+... .|..|+|+|+||.+..
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~----~c~~d~l~v~~g~~~~ 68 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSD----SCCQDYLEVYDGNDES 68 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TT----TSTSSEEEEESSSSTT
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeee----eecccceeEEeecccc
Confidence 7778888999999999999999999999999999999999999999999876 7989999999999865
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.74 E-value=8.5e-18 Score=110.34 Aligned_cols=67 Identities=43% Similarity=1.003 Sum_probs=62.0
Q ss_pred CCCCcccC-CCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864 118 CGGILNTP-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD 188 (193)
Q Consensus 118 C~~~~~~~-~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~ 188 (193)
|++.+... .|.|.||+||..|+++.+|.|.|+++++++|.|+|..|+|+... .|..|+|+||||...
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~~ 68 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSP----NCSYDYLEIYDGPST 68 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCC----CCCCcEEEEEcCCCC
Confidence 67777666 99999999999999999999999999999999999999998765 899999999999875
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.71 E-value=4.3e-17 Score=105.18 Aligned_cols=57 Identities=47% Similarity=1.044 Sum_probs=54.1
Q ss_pred CCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG 187 (193)
Q Consensus 127 g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~ 187 (193)
|.|.||+||..||++.+|.|.|+++++++|.|+|..|+|+... .|..|+|+|+||.+
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~ 57 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD----NCEYDYVEIYDGPS 57 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCC----CeeEeEEEEEeCCC
Confidence 6899999999999999999999999999999999999999865 79999999999986
No 4
>KOG4586|consensus
Probab=99.64 E-value=2.2e-16 Score=101.33 Aligned_cols=74 Identities=42% Similarity=0.801 Sum_probs=68.6
Q ss_pred CEEEeeE-EeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864 1 VALKFQS-FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK 74 (193)
Q Consensus 1 I~l~F~~-f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~ 74 (193)
|.+.|.+ +.+|.+-+|..|.|+|.||+-.-++++++|||...|+.|.|++..|||+|++|+.....||.|+|..
T Consensus 79 ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~Irs~grFlWIkF~sD~ele~~gfsa~y~~ 153 (156)
T KOG4586|consen 79 VEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEIRSVGRFLWIKFRSDSELEYQGFSAEYAI 153 (156)
T ss_pred eEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhheecCcEEEEEEcccchhhhcccceeeec
Confidence 4566765 8899999999999999999999999999999999999999999999999999999999999999964
No 5
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.54 E-value=2.5e-14 Score=93.32 Aligned_cols=72 Identities=43% Similarity=0.856 Sum_probs=65.3
Q ss_pred CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEec
Q psy11864 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIF 72 (193)
Q Consensus 1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~ 72 (193)
|+|+|..|+|+....|..|+|+|++|.....+.++++||...|..++|.++.|+|+|+++......||+|+|
T Consensus 39 I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y 110 (110)
T PF00431_consen 39 IRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSPPPSIISSSNSLFIRFHSDSSNSSRGFKATY 110 (110)
T ss_dssp EEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSCCEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred eeeccccccceeeeeecccceeEEeeccccceeeeeccCCcCCccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence 689999999998888999999999999877788999999888889999999999999999999999999986
No 6
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.51 E-value=1.1e-13 Score=90.72 Aligned_cols=73 Identities=45% Similarity=0.935 Sum_probs=66.7
Q ss_pred CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecc
Q psy11864 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFM 73 (193)
Q Consensus 1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~ 73 (193)
|+|+|.+|+|+....|..|+|+|++|.......++++||...|..+.|+++.|.|+|+++....+.||++.|.
T Consensus 40 i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~ 112 (113)
T cd00041 40 IRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYS 112 (113)
T ss_pred EEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCCCCCCEEecCCEEEEEEEeCCCCCCCCEEEEEE
Confidence 6799999999988889999999999987656778999999888999999999999999999889999999985
No 7
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.50 E-value=1.3e-13 Score=88.87 Aligned_cols=72 Identities=53% Similarity=1.005 Sum_probs=62.7
Q ss_pred CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCC-ceEecCCEEEEEEecCCCCCCCCceEec
Q psy11864 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP-DIKSSGTKLMIKFVSDGSVQKPGFSAIF 72 (193)
Q Consensus 1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~-~i~s~~~~l~v~f~sd~~~~~~GF~~~~ 72 (193)
|+|+|..|+|+....|..|+|+|++|.......++++||...|. .+.|.+|.|+|+|+++....+.||+++|
T Consensus 30 i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~~s~~n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 30 IELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPPVISSSSNSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred EEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCCeEEcCCCEEEEEEEeCCCCCCCCeEEEC
Confidence 67999999999888899999999999875567788999988655 5667799999999999888889999976
No 8
>KOG4292|consensus
Probab=99.43 E-value=1.3e-12 Score=101.40 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=116.6
Q ss_pred CCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccccccccC-------------
Q psy11864 15 QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECAL------------- 81 (193)
Q Consensus 15 ~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c~~------------- 81 (193)
.+....+.++.+.+.+..+.+++||...|..+.|..+.+-+.|.++-.....||.+.+..-...|..
T Consensus 101 ~~~~~~~~~~v~~s~n~~l~~~~~~~t~p~~~es~~~~~~q~~~~~l~a~~~~~~~t~~~~~~~~~~~~~~t~~~q~sg~ 180 (454)
T KOG4292|consen 101 SPLDRLLGLYVGLSENANLAGTQCGSTVPGPFESSRGFLGQQFISDLLAEREGFSATPTYMDMYCGGTYNITFTTQNSGS 180 (454)
T ss_pred ccchhhhcccccccccccccccccCCcCCccccccCCccceEEechhhccccccCCccccccCCCCcccceeecCccccc
Confidence 3445567778888778889999999999999999999999999998877777777655321111111
Q ss_pred ------------------CCCCccce------eecCCCceEEeccCCeE-------------------------------
Q psy11864 82 ------------------EDHGCEHT------CKNILGGYECSCKIGYE------------------------------- 106 (193)
Q Consensus 82 ------------------~~~~c~~~------c~~~~~~~~c~c~~g~~------------------------------- 106 (193)
....++.. +...+....-.|+..+.
T Consensus 181 ~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~n~c~s~~L~i~m~~~s~~~~~~~~~~~~~~~~~as~~~~ 260 (454)
T KOG4292|consen 181 IPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTINECESASLTIFMSYKSEKYGGHGNSRPQECGRNASCGSD 260 (454)
T ss_pred ccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcccccccceeEEEEeccCCcccccccCcChhhccccccccch
Confidence 00000000 00000000000111100
Q ss_pred -----------------EccCCccc---ccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEee
Q psy11864 107 -----------------LHSDGKIC---LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166 (193)
Q Consensus 107 -----------------l~~~~~~C---~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~ 166 (193)
.....+.+ .+.|++++....|.++||+||..|+++.+|+|++.++.++.|.|.|+.|-++
T Consensus 261 ~~~s~s~s~~i~~S~~~~r~s~~~~~~~~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~ 340 (454)
T KOG4292|consen 261 FYSSMSTSKVIFSSGNLNRRSRTNETYQISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIE 340 (454)
T ss_pred hhhhhhhhhhhccccccccccccCCCccccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccch
Confidence 00001111 1478888877899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcEEEEEeCCCCc
Q psy11864 167 GNNLFQSSCEYDNLTVFSKIGDS 189 (193)
Q Consensus 167 ~~~~~~~~C~~D~l~I~dg~~~~ 189 (193)
... .|.+|||+...|.+..
T Consensus 341 ~s~----~C~~d~l~~r~~~~~~ 359 (454)
T KOG4292|consen 341 NSR----ECINDYLVLRNGNSGN 359 (454)
T ss_pred hhh----hhccceEEeccCCCCC
Confidence 887 9999999988877654
No 9
>KOG4586|consensus
Probab=99.10 E-value=1.6e-10 Score=74.55 Aligned_cols=60 Identities=28% Similarity=0.528 Sum_probs=54.6
Q ss_pred ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEee-EEeecCCCCCCCCCCcEEEEEeCC
Q psy11864 123 NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKI 186 (193)
Q Consensus 123 ~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~-f~l~~~~~~~~~C~~D~l~I~dg~ 186 (193)
....+.++|||||+.||++.+|...|.+.+.+-|.+.|.. |.+|..- .|..|+|||.||+
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~----EC~fD~iEvrDGp 106 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSY----ECPFDFIEVRDGP 106 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccc----cCCCCcccccCCC
Confidence 4456788999999999999999999999999999999976 8898875 9999999999997
No 10
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.59 E-value=6.3e-08 Score=49.37 Aligned_cols=36 Identities=47% Similarity=1.217 Sum_probs=30.5
Q ss_pred ccCCCCCccceeecCCCceEEeccCCeEEccCCccc
Q psy11864 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114 (193)
Q Consensus 79 c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C 114 (193)
|...+++|.+.|++.++++.|.|++||.|..|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 455678999999999999999999999999998876
No 11
>KOG4292|consensus
Probab=98.16 E-value=3.4e-06 Score=66.39 Aligned_cols=69 Identities=26% Similarity=0.562 Sum_probs=59.1
Q ss_pred CCCCCc-ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864 117 ACGGIL-NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD 188 (193)
Q Consensus 117 ~C~~~~-~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~ 188 (193)
.|+.++ ++.+|.+.+|+||..|..+--|.|.|.+++++++.|+|..+++.... +.|..-+|.|+++.+.
T Consensus 168 ~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~---n~c~s~~L~i~m~~~s 237 (454)
T KOG4292|consen 168 TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTI---NECESASLTIFMSYKS 237 (454)
T ss_pred ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCccc---ccccceeEEEEeccCC
Confidence 344444 56679999999999999999999999999999999999999887653 5899999999998643
No 12
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=98.09 E-value=0.00013 Score=54.45 Aligned_cols=136 Identities=19% Similarity=0.356 Sum_probs=90.5
Q ss_pred CEEEeeEEeecCCCCCC-CcEEEEEeCCCCC--------------CCcccCccCccCC-CceEecCCEEEEEEecCCCCC
Q psy11864 1 VALKFQSFEIENHDQCT-YDYVEIRDGHAPD--------------SPIIGTYCGYKLP-PDIKSSGTKLMIKFVSDGSVQ 64 (193)
Q Consensus 1 I~l~F~~f~le~~~~C~-~d~l~v~dg~~~~--------------~~~~~~~cg~~~p-~~i~s~~~~l~v~f~sd~~~~ 64 (193)
|.|+|..+++. |. .|+|.|+||-.-. ......||+...+ ..+.|+.|.+.|.|+-. ..
T Consensus 93 IeI~~~~vdid----C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~~~rSSQNvAmi~fRip--~~ 166 (311)
T PF05428_consen 93 IEIEFDHVDID----CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRRSFRSSQNVAMIQFRIP--SP 166 (311)
T ss_pred EEEEEEEeecc----CCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcceeEeccceEEEEEEec--CC
Confidence 56788888875 54 8999999985421 1123468998655 46899999999999866 44
Q ss_pred CCCceEecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCCCCCCCCce
Q psy11864 65 KPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTC 144 (193)
Q Consensus 65 ~~GF~~~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C 144 (193)
+.||.++.....+ ..+|+-....++|.++--|| ....+|
T Consensus 167 GsgFt~~vR~~~N-------------------------------------p~PCNVisq~~~g~fTl~n~----gq~rNC 205 (311)
T PF05428_consen 167 GSGFTLTVRFIKN-------------------------------------PFPCNVISQSPEGRFTLRNP----GQRRNC 205 (311)
T ss_pred CCceEEEEEeCCC-------------------------------------CCCceEeccCCCcceEEECC----CcccCc
Confidence 6789888765332 24565555666777665443 446789
Q ss_pred EEEEEcCCCCeEEEEEeeEEeecCC------CCCCCCCC--cEEEEEeCCC
Q psy11864 145 IWEIVAPPQYRISLNFTHFDIEGNN------LFQSSCEY--DNLTVFSKIG 187 (193)
Q Consensus 145 ~w~I~~~~~~~i~l~F~~f~l~~~~------~~~~~C~~--D~l~I~dg~~ 187 (193)
+..|--| +.++..++.|...+ .....|.. |||+|-.|..
T Consensus 206 Sfs~iyP----~~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~Gg~G 252 (311)
T PF05428_consen 206 SFSIIYP----VVISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGGGNG 252 (311)
T ss_pred EEEEEee----eEEEEEEEecccccCcccccccccCCCCcCCeEEECCcCC
Confidence 9988766 56666777765511 01235653 9999976654
No 13
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.76 E-value=5.2e-05 Score=40.25 Aligned_cols=38 Identities=53% Similarity=1.044 Sum_probs=31.4
Q ss_pred cccccCCCCCcc--ceeecCCCceEEeccCCeEEccCCcc
Q psy11864 76 FDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKI 113 (193)
Q Consensus 76 ~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l~~~~~~ 113 (193)
+++|......|. ..|.+..|++.|.|++||....++..
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~ 41 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTT 41 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCc
Confidence 578888777786 68999999999999999996555443
No 14
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.25 E-value=0.00021 Score=32.74 Aligned_cols=21 Identities=52% Similarity=1.205 Sum_probs=18.8
Q ss_pred ceEEeccCCeEEccCCccccc
Q psy11864 96 GYECSCKIGYELHSDGKICLD 116 (193)
Q Consensus 96 ~~~c~c~~g~~l~~~~~~C~~ 116 (193)
++.|.|++||.+..++.+|.+
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred CEEeeCCCCCcCCCCCCcccc
Confidence 578999999999999999875
No 15
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.20 E-value=0.0047 Score=45.39 Aligned_cols=38 Identities=39% Similarity=0.785 Sum_probs=32.2
Q ss_pred ccccccCCCCCccceeecCCCceEEeccCCeEEccCCc
Q psy11864 75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGK 112 (193)
Q Consensus 75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~ 112 (193)
..++|...+..|.+.|.+..|++.|.|.+||.+..+++
T Consensus 186 ~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 186 VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred CchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 45567777778999999999999999999999877654
No 16
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=96.19 E-value=0.019 Score=37.85 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=32.6
Q ss_pred CCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864 137 LYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS 189 (193)
Q Consensus 137 ~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~ 189 (193)
.+|.+.+|.|.|.+|.|+-++|++.. ++.. . |.+.|.|.....
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-~--------d~i~v~D~~g~~ 79 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLSA-NLND-N--------DSITVTDSNGKS 79 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEEE-ecCC-C--------CEEEEEecCCCE
Confidence 36778899999999999988888554 2222 2 899998876554
No 17
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=94.71 E-value=0.06 Score=27.34 Aligned_cols=29 Identities=48% Similarity=1.149 Sum_probs=21.6
Q ss_pred ccccCCCCCccc--eeecCCCceEEeccCCeE
Q psy11864 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106 (193)
Q Consensus 77 ~~c~~~~~~c~~--~c~~~~~~~~c~c~~g~~ 106 (193)
++|... ..|.. .|.+..+++.|.|++||.
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 445432 34554 799999999999999996
No 18
>smart00181 EGF Epidermal growth factor-like domain.
Probab=92.99 E-value=0.17 Score=24.99 Aligned_cols=25 Identities=44% Similarity=0.929 Sum_probs=20.4
Q ss_pred CCccc-eeecCCCceEEeccCCeEEc
Q psy11864 84 HGCEH-TCKNILGGYECSCKIGYELH 108 (193)
Q Consensus 84 ~~c~~-~c~~~~~~~~c~c~~g~~l~ 108 (193)
..|.+ .|.+..+++.|.|.+||.+.
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 34666 78888999999999999763
No 19
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=92.35 E-value=0.13 Score=26.02 Aligned_cols=27 Identities=48% Similarity=1.023 Sum_probs=18.6
Q ss_pred CCCCCcc--ceeecCCCceEEeccCCeEE
Q psy11864 81 LEDHGCE--HTCKNILGGYECSCKIGYEL 107 (193)
Q Consensus 81 ~~~~~c~--~~c~~~~~~~~c~c~~g~~l 107 (193)
..++.|. ..|.+..+++.|.|.+||..
T Consensus 3 ~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 3 ENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 3344554 37999999999999999964
No 20
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=91.78 E-value=0.63 Score=35.34 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.3
Q ss_pred CCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCC-CcEEEEEeC
Q psy11864 139 IKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE-YDNLTVFSK 185 (193)
Q Consensus 139 ~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~-~D~l~I~dg 185 (193)
.+...|--.+-+.|.+.|.|+|..+++ +|. .|+|.|+||
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdi--------dC~~G~ll~v~DG 115 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDI--------DCEGGDLLKVFDG 115 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeec--------cCCCCCEEEEEec
Confidence 447889999999999999999999999 454 499999998
No 21
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=87.45 E-value=1 Score=21.99 Aligned_cols=19 Identities=47% Similarity=1.146 Sum_probs=16.4
Q ss_pred eeecCC-CceEEeccCCeEE
Q psy11864 89 TCKNIL-GGYECSCKIGYEL 107 (193)
Q Consensus 89 ~c~~~~-~~~~c~c~~g~~l 107 (193)
+|.... +.+.|.|++||..
T Consensus 11 ~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp EEEEESTSEEEEEEBTTEES
T ss_pred EEEeCCCCCEEeECCCCCcc
Confidence 788888 8999999999963
No 22
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=84.69 E-value=1.7 Score=20.97 Aligned_cols=21 Identities=43% Similarity=0.890 Sum_probs=17.4
Q ss_pred ceeecCCCceEEeccCCeEEc
Q psy11864 88 HTCKNILGGYECSCKIGYELH 108 (193)
Q Consensus 88 ~~c~~~~~~~~c~c~~g~~l~ 108 (193)
..|.+..+.+.|.|+.||...
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CEEecCCCCeEeECCCCCccc
Confidence 578888889999999999653
No 23
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=83.02 E-value=0.95 Score=17.31 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=6.9
Q ss_pred EEeccCCeEE
Q psy11864 98 ECSCKIGYEL 107 (193)
Q Consensus 98 ~c~c~~g~~l 107 (193)
.|.|++||..
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4889999963
No 24
>KOG4289|consensus
Probab=81.50 E-value=11 Score=35.60 Aligned_cols=44 Identities=32% Similarity=0.764 Sum_probs=36.4
Q ss_pred CCCceEeccc-ccccccCCCCCccceeecCCCceEEeccCCeEEc
Q psy11864 65 KPGFSAIFMK-EFDECALEDHGCEHTCKNILGGYECSCKIGYELH 108 (193)
Q Consensus 65 ~~GF~~~~~~-~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~ 108 (193)
..||...|+. .++.|.....+-..+|....+.|+|.|.+||+..
T Consensus 1227 PpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1227 PPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred CCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCcccc
Confidence 4788888865 6788887776667799999999999999999754
No 25
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=81.34 E-value=2.8 Score=20.51 Aligned_cols=21 Identities=48% Similarity=0.986 Sum_probs=17.4
Q ss_pred cceeecCCCceEEeccCCeEE
Q psy11864 87 EHTCKNILGGYECSCKIGYEL 107 (193)
Q Consensus 87 ~~~c~~~~~~~~c~c~~g~~l 107 (193)
...|.+..+.+.|.|.+||..
T Consensus 14 ~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 14 GGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred CCEeECCCCCeEeECCCCCcC
Confidence 347888889999999999864
No 26
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=70.35 E-value=5.3 Score=19.83 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=11.3
Q ss_pred eEEeccCCeEEccC
Q psy11864 97 YECSCKIGYELHSD 110 (193)
Q Consensus 97 ~~c~c~~g~~l~~~ 110 (193)
.+|.|+.||.+..+
T Consensus 18 ~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 18 GQCFCPEGYILDEG 31 (34)
T ss_pred CceeCCCceEecCC
Confidence 38999999988654
No 27
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=46.57 E-value=37 Score=17.28 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=16.4
Q ss_pred ceeecCC-CceEEeccCCeEEcc
Q psy11864 88 HTCKNIL-GGYECSCKIGYELHS 109 (193)
Q Consensus 88 ~~c~~~~-~~~~c~c~~g~~l~~ 109 (193)
..|.+.. |+..|.|..||....
T Consensus 11 A~C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 11 AGCFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp EEEEEETTSEEEEEE-TTEEEET
T ss_pred cccEEcCCCCEEEEeeCCccccC
Confidence 3677776 889999999998653
No 28
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=45.37 E-value=11 Score=20.57 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=7.1
Q ss_pred CCCCCcEEE
Q psy11864 173 SSCEYDNLT 181 (193)
Q Consensus 173 ~~C~~D~l~ 181 (193)
.+|.||||-
T Consensus 29 knCsYDYll 37 (56)
T PF13978_consen 29 KNCSYDYLL 37 (56)
T ss_pred CCCcceeee
Confidence 489999973
No 29
>KOG1214|consensus
Probab=40.29 E-value=30 Score=30.85 Aligned_cols=39 Identities=41% Similarity=0.962 Sum_probs=28.8
Q ss_pred cccccCCCCCcc--ceeecCCCceEEeccCCeEEccCCccc
Q psy11864 76 FDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKIC 114 (193)
Q Consensus 76 ~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l~~~~~~C 114 (193)
.++|....+.|. ..|++.+++++|.|..||....++.+|
T Consensus 734 ~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tC 774 (1289)
T KOG1214|consen 734 ENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTC 774 (1289)
T ss_pred hhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcce
Confidence 344554445554 479999999999999999988876555
No 30
>PF13948 DUF4215: Domain of unknown function (DUF4215)
Probab=39.65 E-value=29 Score=18.56 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=17.6
Q ss_pred eccCCeEEccCCcccccCCCCCc
Q psy11864 100 SCKIGYELHSDGKICLDACGGIL 122 (193)
Q Consensus 100 ~c~~g~~l~~~~~~C~~~C~~~~ 122 (193)
.|..||.+......|...||-.+
T Consensus 3 ~C~~G~~l~~~~~~C~~~CGDgi 25 (47)
T PF13948_consen 3 QCQDGYYLNQNNNKCEPICGDGI 25 (47)
T ss_pred cccCccEEcCCCCccccccCCCe
Confidence 36678888877888888888654
No 31
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=39.31 E-value=1.2e+02 Score=26.41 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=15.5
Q ss_pred CCEEEEE--EecCCCCCCCCceEe
Q psy11864 50 GTKLMIK--FVSDGSVQKPGFSAI 71 (193)
Q Consensus 50 ~~~l~v~--f~sd~~~~~~GF~~~ 71 (193)
+..+.|+ +.+|......||.+.
T Consensus 431 GqtV~LrFrY~TD~~v~~~G~~vD 454 (645)
T PF05547_consen 431 GQTVQLRFRYVTDGGVAGRGFYVD 454 (645)
T ss_pred CCeEEEEEEEEcCCCccCCcEEEE
Confidence 3444444 568999999998763
No 32
>KOG1214|consensus
Probab=36.07 E-value=37 Score=30.28 Aligned_cols=39 Identities=36% Similarity=0.795 Sum_probs=26.3
Q ss_pred ccccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864 75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115 (193)
Q Consensus 75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~ 115 (193)
..++|......-...|.+.++++.|.|-+||. .|+-.|.
T Consensus 826 dvDeC~psrChp~A~CyntpgsfsC~C~pGy~--GDGf~CV 864 (1289)
T KOG1214|consen 826 DVDECSPSRCHPAATCYNTPGSFSCRCQPGYY--GDGFQCV 864 (1289)
T ss_pred cccccCccccCCCceEecCCCcceeecccCcc--CCCceec
Confidence 44666643333345899999999999999984 4444443
No 33
>KOG1215|consensus
Probab=34.64 E-value=47 Score=29.90 Aligned_cols=42 Identities=33% Similarity=0.789 Sum_probs=35.4
Q ss_pred ccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864 75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116 (193)
Q Consensus 75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~ 116 (193)
..+.|...+..|.+.|...+....|.|+.|+.+..++..|..
T Consensus 669 ~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~ 710 (877)
T KOG1215|consen 669 GVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSS 710 (877)
T ss_pred CCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecC
Confidence 446677777889999999888779999999999999988876
No 34
>KOG4260|consensus
Probab=29.38 E-value=50 Score=25.24 Aligned_cols=43 Identities=30% Similarity=0.594 Sum_probs=33.2
Q ss_pred CCCceEec--ccccccccCCCCCcc--ceeecCCCceEEeccCCeEE
Q psy11864 65 KPGFSAIF--MKEFDECALEDHGCE--HTCKNILGGYECSCKIGYEL 107 (193)
Q Consensus 65 ~~GF~~~~--~~~~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l 107 (193)
..||.+.- .+++++|......|. +.|.++.|++.|.+.+||.-
T Consensus 223 kkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 223 KKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 47787763 237788887766564 58999999999999888865
No 35
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=29.03 E-value=63 Score=20.01 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=20.1
Q ss_pred CCCceEecccccc---cccCCCCCccceeecCCCceEEeccCC
Q psy11864 65 KPGFSAIFMKEFD---ECALEDHGCEHTCKNILGGYECSCKIG 104 (193)
Q Consensus 65 ~~GF~~~~~~~~~---~c~~~~~~c~~~c~~~~~~~~c~c~~g 104 (193)
..||.+.|..... +|....+.|...-. ...+.|-|+.|
T Consensus 53 ~~GF~L~w~~~~~~C~~C~~SgG~Cgy~~~--~~~f~C~C~dg 93 (94)
T PF14380_consen 53 KKGFELEWNADSGDCRECEASGGRCGYDSN--SEQFTCFCSDG 93 (94)
T ss_pred hcCcEEEEeCCCCcCcChhcCCCEeCCCCC--CceEEEECCCC
Confidence 6999999985333 34444443332211 13455666543
No 36
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=27.19 E-value=1e+02 Score=18.32 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCeEEEEEee
Q psy11864 142 KTCIWEIVAPPQYRISLNFTH 162 (193)
Q Consensus 142 ~~C~w~I~~~~~~~i~l~F~~ 162 (193)
-.|.-.|+.|.|.+|..+|..
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCC
Confidence 368999999999999999874
No 37
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=26.27 E-value=1.8e+02 Score=18.45 Aligned_cols=40 Identities=25% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCceEecccccccccCCC-CCccceeecCCCceEEeccCCeE
Q psy11864 66 PGFSAIFMKEFDECALED-HGCEHTCKNILGGYECSCKIGYE 106 (193)
Q Consensus 66 ~GF~~~~~~~~~~c~~~~-~~c~~~c~~~~~~~~c~c~~g~~ 106 (193)
..+...+.+-.+.|.... .+--..|. ......|.|.+||.
T Consensus 67 ~~W~~~~~~p~d~Cd~y~~CG~~g~C~-~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 67 QSWSVFWSAPKDQCDVYGFCGPNGICN-SNNSPKCSCLPGFE 107 (110)
T ss_pred CcEEEEEEecccCCCCccccCCccEeC-CCCCCceECCCCcC
Confidence 455555655556676432 12234563 33456799999985
No 38
>KOG0281|consensus
Probab=22.17 E-value=99 Score=24.70 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864 141 NKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG 187 (193)
Q Consensus 141 ~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~ 187 (193)
+.-|.-++.-..|....|+|.+|++-... ..|-+-|+|-.+
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~fqIvsss------HddtILiWdFl~ 478 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDEFQIISSS------HDDTILIWDFLN 478 (499)
T ss_pred cchHHHhhhhccceeEEEeecceEEEecc------CCCeEEEEEcCC
Confidence 44466555556678899999999996532 247888887654
No 39
>KOG4795|consensus
Probab=21.36 E-value=1.4e+02 Score=22.33 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=17.8
Q ss_pred CceEEEEEcCCCCeEEEEEeeEEee
Q psy11864 142 KTCIWEIVAPPQYRISLNFTHFDIE 166 (193)
Q Consensus 142 ~~C~w~I~~~~~~~i~l~F~~f~l~ 166 (193)
..|.=.+....+.+|.|.|...+..
T Consensus 45 ts~~G~l~~~k~n~Vti~~~n~q~~ 69 (264)
T KOG4795|consen 45 TSKEGLLHKGKDNKVTIEFQNNQST 69 (264)
T ss_pred CCCccceeecCCCeEEEEecCCCCC
Confidence 3455557778888888888887743
No 40
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.23 E-value=1.7e+02 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=11.3
Q ss_pred CcEEEEEeCCCCc
Q psy11864 177 YDNLTVFSKIGDS 189 (193)
Q Consensus 177 ~D~l~I~dg~~~~ 189 (193)
||+|.|++.++++
T Consensus 46 yD~v~i~eaPD~~ 58 (91)
T PF08734_consen 46 YDFVVIVEAPDDE 58 (91)
T ss_pred CCEEEEEEcCCHH
Confidence 6999999998765
No 41
>KOG2689|consensus
Probab=20.02 E-value=1.9e+02 Score=22.19 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=24.5
Q ss_pred ccCCCCCCCCCC--CCceEEEEEcCCCCeEEEEEee
Q psy11864 129 LTSPSFPDLYIK--NKTCIWEIVAPPQYRISLNFTH 162 (193)
Q Consensus 129 i~Sp~~p~~y~~--~~~C~w~I~~~~~~~i~l~F~~ 162 (193)
..+|+-+.--|+ ...|+..|..++|+.+..+|..
T Consensus 194 ~~s~s~~~~spp~~ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 194 VPSPSAPSQSPPTDYSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred CCCCCccccCCCCcccceEEEEEcCCCCeeeeecCc
Confidence 334444433333 5689999999999999999974
Done!