RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11864
(193 letters)
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 175 bits (446), Expect = 1e-52
Identities = 57/191 (29%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ L F C YD++EIRDG + + ++G +CG PP I SSG+ L IKF SD
Sbjct: 46 IVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSD 105
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
+ Q GFS + K + C
Sbjct: 106 YARQGAGFSLRY------------------------------------EIFKTGSEDCSK 129
Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSS--CEYD 178
+PNGT+ SP FP+ Y N C + I+A P+ I L F FD+E + L C+YD
Sbjct: 130 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYD 189
Query: 179 NLTVFSKIGDS 189
L ++ I
Sbjct: 190 WLDIWDGIPHV 200
Score = 88.1 bits (218), Expect = 8e-21
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 1 VALKFQSFEIEN------HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
+ L+F F++E+ C YD+++I DG P+IG YCG K P +++SS L
Sbjct: 165 IILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILS 224
Query: 55 IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ F +D +V K GFSA + E +SDG+
Sbjct: 225 LTFHTDMAVAKDGFSARYYLVHQEPLENFQCNVPLGMESGRIANEQI-SASSTYSDGRWT 283
Score = 73.1 bits (179), Expect = 2e-15
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 117 ACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFTHFDIEGNNLFQSS 174
CGG LN+ + G +TSP +P Y ++ C W + AP P +I LNF
Sbjct: 5 PCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK----HD 60
Query: 175 CEYDNLTVFSKIGDS 189
C+YD + + +S
Sbjct: 61 CKYDFIEIRDGDSES 75
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 164 bits (417), Expect = 4e-51
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKL----PPDIKSSGTKLMIK 56
+ L F F +E+ C YDYV++ + G + S G+ + I
Sbjct: 39 IKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSIT 98
Query: 57 FVSDGSVQKPGF------SAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
F SD S ++ A+ + E E E+ C+H C N +GGY CSC+ GY LH+D
Sbjct: 99 FRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTD 158
Query: 111 GKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGN 168
+ C + G +TSP FP+ Y K+ C++ I + ++L F FDIE +
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218
Query: 169 NLFQSSCEYDNLTVF 183
+ C YD + +
Sbjct: 219 P--EVPCPYDYIKIK 231
Score = 83.4 bits (206), Expect = 8e-20
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G ++G +CG K P I + ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260
Query: 58 VSDGSVQKPGFSAIF 72
SD S + G+ +
Sbjct: 261 HSDNSGENRGWRLSY 275
Score = 81.9 bits (202), Expect = 3e-19
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
LN G + SP +PD Y + W I P +RI L F HF++E + CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60
Query: 182 VFS 184
V +
Sbjct: 61 VET 63
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 160 bits (406), Expect = 2e-49
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 14/196 (7%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
+ L F F +E +C YD+V++ G + + G S G L +
Sbjct: 38 LRLYFTHFNLELSYRCEYDFVKLTSGTKVLATLCGQESTDTERAPGNDTFYSLGPSLKVT 97
Query: 57 FVSDGSVQKPGFS------AIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
F SD S +KP A + E + C+H C LGGY CSC++GY LH +
Sbjct: 98 FHSDYSNEKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQN 157
Query: 111 GKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGN 168
C G + +G L+SP +P Y K +C + I + I+L+F FD+E +
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH 217
Query: 169 NLFQSSCEYDNLTVFS 184
++ C YD+L + +
Sbjct: 218 P--EAQCPYDSLKIQT 231
Score = 82.7 bits (204), Expect = 2e-19
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 1 VALKF-QSFEIENHD--QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
+ L F +SF++E H QC YD ++I+ G +CG LPP I++ K+ I F
Sbjct: 204 ITLDFVESFDVEMHPEAQCPYDSLKIQTD----KREYGPFCGKTLPPRIETDSNKVTITF 259
Query: 58 VSDGSVQKPGFSAIFMKEFDECALEDH 84
+D S G+ + H
Sbjct: 260 TTDESGNHTGWKIHYTSTAQPHHHHHH 286
Score = 76.2 bits (187), Expect = 4e-17
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 126 NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
G L SP FP+ Y ++ W + APP +R+ L FTHF++E + CEYD + + S
Sbjct: 8 FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS----YRCEYDFVKLTS 62
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 160 bits (407), Expect = 1e-48
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP--------DIKSSGTK 52
+ L F F +E+ C YDYV++ ++ T+CG + + S G+
Sbjct: 39 IKLYFMHFNLESSYLCEYDYVKVETE----DQVLATFCGRETTDTEQTPGQEVVLSPGSF 94
Query: 53 LMIKFVSDGSVQKPGF------SAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
+ I F SD S ++ A+ + E E E+ C+H C N +GGY CSC+ GY
Sbjct: 95 MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Query: 107 LHSDGKICLDAC-GGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
LH+D + C C + G +TSP FP+ Y K+ C++ I + ++L F FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
Query: 165 IEGNNLFQSSCEYDNLTVFS 184
IE + + C YD + +
Sbjct: 215 IEDHP--EVPCPYDYIKIKV 232
Score = 95.1 bits (236), Expect = 1e-23
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G ++G +CG K P I + ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260
Query: 58 VSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYE------CSCKIGYELHSDG 111
SD S + G+ + +EC + Y SC GY++ D
Sbjct: 261 HSDNSGENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDN 320
Query: 112 KICLD 116
Sbjct: 321 VEMDT 325
Score = 76.2 bits (187), Expect = 8e-17
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
LN G + SP +PD Y + W I P +RI L F HF++E + CEYD +
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60
Query: 182 VFS 184
V +
Sbjct: 61 VET 63
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 143 bits (361), Expect = 6e-41
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 44/184 (23%)
Query: 1 VALKFQSFEIENHDQ-CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
+A+ F +F +E D++EIRDG SP++G + G LPP I S KL +KF S
Sbjct: 155 IAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKS 214
Query: 60 DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
D + GFSA + CG
Sbjct: 215 DQIDTRSGFSAYWDGSSTG---------------------------------------CG 235
Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
G L T +GT SP++P Y + C W + + L F F +E + +C D
Sbjct: 236 GNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH----PNCTLDY 291
Query: 180 LTVF 183
L V+
Sbjct: 292 LAVY 295
Score = 137 bits (347), Expect = 5e-39
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 42/189 (22%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ L F++F +E H CT DY+E+ D +G YCG +PP + SSG LM+ FV+D
Sbjct: 39 IHLMFETFHLEFHYNCTNDYLEVYDT--DSETSLGRYCGKSIPPSLTSSGNSLMLVFVTD 96
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
+ GF + + AC
Sbjct: 97 SDLAYEGFLINY-------------------------------------EAISAATACLQ 119
Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
GT TSP+FP+ Y N CI+ I I+++FT+F +E + D L
Sbjct: 120 DYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAI---GNYYTDFL 176
Query: 181 TVFSKIGDS 189
+ +
Sbjct: 177 EIRDGGYEK 185
Score = 137 bits (346), Expect = 8e-39
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 44/184 (23%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
L+F+ F +E+H CT DY+ + DG + +S ++ CG + PP I+SSG + IK +D
Sbjct: 272 FELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTD 331
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
Q GF A +
Sbjct: 332 EGQQGRGFKAEY----------------------------------------RQTCENVV 351
Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
I+N G L S +P+ Y +N+ C W I A ++ F FD+E + +C D L
Sbjct: 352 IVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHI----NCSTDYL 407
Query: 181 TVFS 184
++
Sbjct: 408 ELYD 411
Score = 83.4 bits (206), Expect = 4e-19
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
V F +F++E+H C+ DY+E+ DG +G YCG LPP ++ +KL + ++D
Sbjct: 387 VNYTFLAFDLEHHINCSTDYLELYDG----PRQMGRYCGVDLPPPGSTTSSKLQVLLLTD 442
Query: 61 G-SVQKPGFSAIF 72
G ++ GF +
Sbjct: 443 GVGRREKGFQMQW 455
Score = 81.5 bits (201), Expect = 1e-18
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
CG IL GT+ SP P++Y C W I+ P + I L F F +E + +C
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH----YNCTN 56
Query: 178 DNLTVF 183
D L V+
Sbjct: 57 DYLEVY 62
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 128 bits (324), Expect = 2e-38
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
+ L F +IE + C YD V+I G + + G + + KL +
Sbjct: 35 IHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVI 94
Query: 57 FVSDGSVQKPGFSAIF---MKEFDECA-LEDHGCEHTCKNILGGYECSCKIGYELHSDGK 112
F SD S ++ + +EC D C H C N +GGY CSC Y LH D K
Sbjct: 95 FKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK 154
Query: 113 ICLD 116
C
Sbjct: 155 NCGV 158
Score = 75.2 bits (185), Expect = 1e-17
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 124 TPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVF 183
T G + SP++P Y W+I P Y I L FTH DIE + +C YD++ +
Sbjct: 3 TMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS----ENCAYDSVQII 58
Query: 184 S 184
S
Sbjct: 59 S 59
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 117 bits (295), Expect = 3e-34
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ L F F++E+ C DYVEI D + +G YCG +LP DI S+G + +KF+SD
Sbjct: 45 IHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSD 104
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCE-----HTCKNILGGY 97
SV GF + D + G KN L G
Sbjct: 105 ASVTAGGFQIKY-VAMDPVSKSSQGKNTSTTSTGNKNFLAGR 145
Score = 84.8 bits (210), Expect = 2e-21
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
CGG+ P SP FP+ Y N+ C W I RI L+F FD+E + C
Sbjct: 7 CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD----PGCLA 62
Query: 178 DNLTVF 183
D + ++
Sbjct: 63 DYVEIY 68
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 115 bits (288), Expect = 6e-33
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
+ L F F++E C YD+V++ G + + G S G+ L I
Sbjct: 42 LRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDIT 101
Query: 57 FVSDGSVQKPGFSAIF---MKEFDECAL---EDHGCEHTCKNILGGYECSCKIGYELHSD 110
F SD S +KP ++ DEC + E C+H C N LGG+ CSC+ GY LH +
Sbjct: 102 FRSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRN 161
Query: 111 GKICLDAC 118
+ C +
Sbjct: 162 KRTCSEQS 169
Score = 79.6 bits (196), Expect = 3e-19
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 117 ACGGILNTP-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
G P G L SP FP Y ++ W + APP YR+ L FTHFD+E + C
Sbjct: 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS----HLC 57
Query: 176 EYDNLTVFS 184
EYD + + S
Sbjct: 58 EYDFVKLSS 66
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 104 bits (261), Expect = 7e-27
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 1 VALKFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
+ L+F+SF++E C YD +EI DG P IG YCG K P I+SS L
Sbjct: 49 IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILS 108
Query: 55 IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELH 108
+ F +D ++ K GFSA + + + E + +
Sbjct: 109 MVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYS 162
Score = 92.0 bits (228), Expect = 3e-22
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSS- 174
C TP+G + SP FP+ Y + C + + AP I L F FD+E ++
Sbjct: 9 PECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGM 68
Query: 175 -CEYDNLTVFSKIGDS 189
C YD L ++ D
Sbjct: 69 FCRYDRLEIWDGFPDV 84
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 101 bits (252), Expect = 1e-25
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGN--NLFQS 173
+ C +PNGT+ SP FP+ Y N C + I+A P+ I L F FD+E + + +
Sbjct: 6 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEG 65
Query: 174 SCEYDNLTVFSKIGDS 189
C+YD L ++ I
Sbjct: 66 DCKYDWLDIWDGIPHV 81
Score = 90.1 bits (223), Expect = 1e-21
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 1 VALKFQSFEIEN------HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
+ L+F F++E+ C YD+++I DG P+IG YCG K P +++SS L
Sbjct: 46 IILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILS 105
Query: 55 IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKN 92
+ F +D +V K GFSA + E
Sbjct: 106 LTFHTDMAVAKDGFSARYYLVHQEPLENFQCNVPLGME 143
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 91.2 bits (227), Expect = 2e-24
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
V + Q ++ C + +EI DG P SP++G C D +SSG+ + +K++ +
Sbjct: 43 VRVSIQYLQLN----CNKESLEIIDGL-PGSPVLGKICEGS-LMDYRSSGSIMTVKYIRE 96
Query: 61 GSVQKPGFSAIFMKE 75
+ ++ ++
Sbjct: 97 PEHPASFYEVLYFQD 111
Score = 69.7 bits (171), Expect = 5e-16
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
CGGIL +G + + Y C+W I PP+Y + ++ + + C
Sbjct: 10 CGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN--------CNK 56
Query: 178 DNLTVF 183
++L +
Sbjct: 57 ESLEII 62
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 90.1 bits (224), Expect = 8e-24
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 1 VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
V L+F+ F+IE+H + C YDY++I+ G S + G +CG K P I + + I F
Sbjct: 43 VTLQFEDIFDIEDHPEVPCPYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILF 98
Query: 58 VSDGSVQKPGFSAIF 72
SD S + G+ +
Sbjct: 99 RSDNSGENRGWRLSY 113
Score = 76.6 bits (189), Expect = 1e-18
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 115 LDACGGILNT-PNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQ 172
+ C G L T GT+TSP +P+ Y K+ C + I + ++L F FDIE + +
Sbjct: 1 MVECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH--PE 58
Query: 173 SSCEYDNLTVF 183
C YD + +
Sbjct: 59 VPCPYDYIKIK 69
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 82.5 bits (204), Expect = 6e-21
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
V + + C +YVE+ DG P G C S+ + IK+
Sbjct: 42 VRMAIPYLNLA----CGKEYVEVFDGL-LSGPSYGKLCA-GAAIVFLSTANTMTIKYNRI 95
Query: 61 GSVQKPGFSAIF 72
F F
Sbjct: 96 SGNSSSPFLIYF 107
Score = 72.8 bits (179), Expect = 3e-17
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
D CG ++ +G++++ C W I+ P ++ + + ++ C
Sbjct: 7 DECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA--------C 53
Query: 176 EYDNLTVFSKIGDS 189
+ + VF +
Sbjct: 54 GKEYVEVFDGLLSG 67
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 79.0 bits (195), Expect = 1e-19
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
+ + + + C +YVE+ +G AP S +G +C + + + +K+ D
Sbjct: 39 LLVSIPTLNLT----CGKEYVEVLEG-APGSKSLGKFCE--GLSILNRGSSGMTVKYKRD 91
Query: 61 GSVQKPGFSAIF 72
+ IF
Sbjct: 92 SGHPASPYEIIF 103
Score = 74.3 bits (183), Expect = 6e-18
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 117 ACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 176
ACGG L GT+ + P C+W + P+Y++ ++ ++ C
Sbjct: 5 ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT--------CG 51
Query: 177 YDNLTVFSKIGDS 189
+ + V S
Sbjct: 52 KEYVEVLEGAPGS 64
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 60.4 bits (147), Expect = 9e-13
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 77 DECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICLD 116
DEC+L+ C CKNI G +EC C GY + K C D
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED 44
Score = 53.4 bits (129), Expect = 3e-10
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKI--GYELHSDGKICLD 116
DEC+ ++ C C N GGY C C G++L D K C
Sbjct: 46 DECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 58.5 bits (142), Expect = 2e-12
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGI 121
C+L++ C+ C CSC GY L +GK C+ CG
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQ 50
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 58.1 bits (141), Expect = 2e-12
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGIL 122
C+L++ GC+ C+ CSC GY L D K C+ CG
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT 48
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 56.3 bits (136), Expect = 1e-11
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 77 DECALEDHG--------CEHTCKNILGGYECSCKIGYELHSDGKIC 114
DECA C+H C N +GGY CSC+ GYEL D C
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 57.0 bits (138), Expect = 3e-11
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+EC + GC + C ++ GYEC C G++L + + C D
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CED 68
Score = 55.0 bits (133), Expect = 2e-10
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
DEC + C C N+ GGY+C C+ G++L K C
Sbjct: 70 DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 32.7 bits (75), Expect = 0.017
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 88 HTCKNILGGYECSCKIGYELHSDGKI--CLDACGG 120
H + + Y+ CLD GG
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGG 38
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 57.8 bits (140), Expect = 3e-11
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
+EC C N G Y C C +EL+ C+D
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45
Score = 52.7 bits (127), Expect = 3e-09
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 77 DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC 114
DEC C+ C N G ++C C GY L+ D ++C
Sbjct: 123 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 50.1 bits (120), Expect = 2e-08
Identities = 4/40 (10%), Positives = 7/40 (17%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+ C G+ + I D
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
Score = 44.3 bits (105), Expect = 3e-06
Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 3/42 (7%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
+ + G CS +IG + C
Sbjct: 45 RSGN---CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 55.4 bits (134), Expect = 6e-11
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICL 115
DEC + C C N G Y C C G++L + C+
Sbjct: 47 DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 50.8 bits (122), Expect = 3e-09
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 77 DECALEDHGCEH-TCKNILGGYECSCKIGYEL-HSDGKICLD 116
DEC + C C N G +EC C GYE K C+D
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD 45
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 54.8 bits (132), Expect = 8e-11
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 74 KEFDECALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICL----DACGGI 121
+ C E+ GCE C + G C C GY L +DG C CG I
Sbjct: 3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 55
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 52.8 bits (127), Expect = 3e-10
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 79 CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGILNTPNGTLT 130
C +++ CE CKN CSC GY L + K C A CG + + LT
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLT 58
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 55.2 bits (132), Expect = 2e-09
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ C + + GC C+ I G +C+C GY L DG+ C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC 41
Score = 39.8 bits (92), Expect = 3e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 72 FMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ C + GC H C Y C+C G+ + C
Sbjct: 343 QPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 384
Score = 39.4 bits (91), Expect = 3e-04
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+ECA E+ C C N G ++C C+ GYEL D + C
Sbjct: 45 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA 83
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 52.7 bits (127), Expect = 3e-09
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL 115
DEC + C++ C N G ++C C G L + G+ICL
Sbjct: 108 DECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 51.2 bits (123), Expect = 7e-09
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
DEC CKN G + C C L IC++
Sbjct: 5 DECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45
Score = 34.6 bits (80), Expect = 0.006
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+C G L + C GY G C D
Sbjct: 69 SQCC-SSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQCED 106
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 50.7 bits (122), Expect = 3e-09
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
DEC++ + TCKN++GG+EC+C+ G+E C
Sbjct: 45 DECSVGNPCGNGTCKNVIGGFECTCEEGFEP-GPMMTC 81
Score = 50.7 bits (122), Expect = 3e-09
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
DEC D C N G Y C C GY L G C+D
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 50.1 bits (120), Expect = 3e-09
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 79 CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGI 121
C E+ GCE C + G C C GY L +DG C CG I
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 49
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 51.3 bits (123), Expect = 4e-09
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD----ACG 119
F C+L++ GC H C +G CSC GY+L D C CG
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 101
Score = 31.2 bits (71), Expect = 0.064
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCE--------HTCKNILGGYECSCKIGYELH 108
D+C + TC + +G + C C+ G+E
Sbjct: 7 DQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 46
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 51.4 bits (123), Expect = 6e-09
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICLDAC 118
DEC+ H C+ C N +G Y C C+ G++
Sbjct: 97 DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDT 140
Score = 41.0 bits (96), Expect = 4e-05
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 77 DECALEDHGC---EHTCKNILGGYECSCKIGYELHS--------DGKICLD 116
+ECA C N G Y+C C GYE S C D
Sbjct: 45 NECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD 95
Score = 30.9 bits (70), Expect = 0.11
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYE-----LHSDGKICLD 116
CA C + + C C G+ + + + C D
Sbjct: 3 RGCA---RWC-PQDSSCVNATACRCNPGFSSFSEIITTPMETCDD 43
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 48.5 bits (116), Expect = 5e-08
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELH-SDGKIC 114
DEC C C N+ G +EC C L G C
Sbjct: 81 DECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 44.3 bits (105), Expect = 2e-06
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 77 DECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGK---ICLDACGG 120
D C CE+ C+ + Y C C G+
Sbjct: 5 DPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTA 50
Score = 42.7 bits (101), Expect = 5e-06
Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+ C C C C GY L DG IC D
Sbjct: 42 CQMFCNQTACPADCDP-NTQASCECPEGYIL-DDGFICTD 79
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 49.1 bits (116), Expect = 2e-07
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+EC + GC H C ++ GYEC C G++L + +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 38
Score = 41.8 bits (97), Expect = 6e-05
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 74 KEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
++ DEC + C C N+ GGY+C C+ G++L K C
Sbjct: 38 EDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 82
Score = 37.9 bits (87), Expect = 0.001
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 78 ECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICL 115
L + GC++ C + C+C G L D + CL
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 47.1 bits (111), Expect = 9e-07
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 47 KSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
K S + +I + + + + CA E+ GC H C G C+C IG+E
Sbjct: 549 KRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Query: 107 LHSDGKICL 115
L SD K C+
Sbjct: 609 LISDMKTCI 617
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 45.2 bits (106), Expect = 4e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+ECA E+ C C N G ++C C+ GYEL D + C
Sbjct: 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA 40
Score = 36.4 bits (83), Expect = 0.003
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
C + GC H C Y C+C G+ + C
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 341
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 44.3 bits (105), Expect = 8e-06
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 77 DECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNG 127
+EC E GC+H C Y CSC GY L D K C+
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTS 54
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 40.9 bits (96), Expect = 6e-05
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
C+L++ C+ C CSC GY L +GK C+
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 31.3 bits (71), Expect = 0.14
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYE 106
D+C + CK+ LG Y C+C G+E
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Score = 25.9 bits (57), Expect = 8.8
Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 7/56 (12%)
Query: 89 TCKNILGGYECSCKIGYELHSDGKICLDAC-------GGILNTPNGTLTSPSFPDL 137
+ + + G S DA L N T +L
Sbjct: 132 LERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 40.8 bits (94), Expect = 7e-05
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
C L + C N+ G Y C C G+ + +CL
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179
Score = 33.1 bits (74), Expect = 0.027
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 78 ECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
C E+ + Y C C GY L D +
Sbjct: 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
Score = 30.0 bits (66), Expect = 0.31
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 3/44 (6%)
Query: 75 EFDECALEDHGC--EHTCKNILGGYECSCKIGYELHSDGKICLD 116
E + A+ + + C C G C +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVH-LSENTCEE 43
Score = 28.5 bits (62), Expect = 1.3
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 82 EDHGCEHTCKNILGGYECSCKIGYELHSDGK 112
E C + + CSC IG + + +
Sbjct: 101 ESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 40.0 bits (94), Expect = 7e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
C+L++ C+ C CSC GY L +GK C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC-IPT 122
Score = 29.6 bits (67), Expect = 0.29
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 74 KEFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
K+ D+C C++ CK+ LG Y C+C G+E
Sbjct: 40 KDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE 72
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 40.8 bits (95), Expect = 1e-04
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 79 CALEDHGCEHTCKNI--LGGYECSCKIGYELHSDGKICLDAC 118
C +++ GC H C Y+C+C G +L +GK C D
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 40.5 bits (94), Expect = 1e-04
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 77 DECALEDHGC--EHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPN 126
CA H C C++ G+ C C Y +G+ C+
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGK 55
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 40.6 bits (94), Expect = 2e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 77 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLT 130
+ L + GC++ C + C+C G L D + CL + T +
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTV 724
Query: 131 SPSFPDLYIKNK 142
++ +
Sbjct: 725 RLKVSSTAVRTQ 736
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 37.2 bits (87), Expect = 7e-04
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 74 KEFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
++ DEC+L + CEH C N LG +EC C GY
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 75 EFDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
+ +EC + C++ TC + +G ++C C GYE G C
Sbjct: 44 DVNECV--SNPCQNDATCLDQIGEFQCICMPGYE----GVHC 79
Score = 30.3 bits (69), Expect = 0.22
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
DECA C H C + + ++C C G+ G +C
Sbjct: 84 DECA--SSPCLHNGRCLDKINEFQCECPTGFT----GHLC 117
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 38.1 bits (88), Expect = 8e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 77 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICL 115
+ L + GC++ C + C+C G L D + CL
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.0 bits (86), Expect = 0.002
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
GC+H C Y CSC GY L D K C+
Sbjct: 47 HPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHD 86
Score = 29.7 bits (67), Expect = 0.48
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
C + C H +C++ + GY C+C GYE G C
Sbjct: 6 SPCISQP--CLHNGSCQDSIWGYTCTCSPGYE----GSNC 39
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 65 KPGFSAIFMKEFDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICLDAC 118
+ GF + C +++ C+ CSC GY L D K C
Sbjct: 74 QVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC-KPA 127
Score = 30.4 bits (69), Expect = 0.22
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+ D+C CK+ + YEC C++G+E GK C
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNC 82
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 36.3 bits (83), Expect = 0.004
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 77 DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICLDAC 118
+ L + GC++ C + C+C G L D + CL
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA 694
Score = 29.0 bits (64), Expect = 1.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
+EC + GC H C ++ GYEC C G++L + C D
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDID 335
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 35.6 bits (81), Expect = 0.007
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 76 FDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKICLDAC 118
CA ++ GC H C G CSC + L D C
Sbjct: 579 QHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTK 622
Score = 33.6 bits (76), Expect = 0.035
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 72 FMKEFDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGKIC 114
++ECA + C H C + +GG+ C C Y L++D + C
Sbjct: 261 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.8 bits (78), Expect = 0.013
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 75 EFDECALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLDAC 118
+ C E+ GCE C + G C C GY L +DG C
Sbjct: 87 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC-TPT 130
Score = 30.4 bits (69), Expect = 0.21
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 75 EFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
+ D+CA C++ +CK+ L Y C C +E
Sbjct: 46 DGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFE 77
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 32.3 bits (73), Expect = 0.080
Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 77 DECALEDHGC-----EHTCKNILGGYEC-SCKIGYE 106
DECAL C C N G+ C C Y
Sbjct: 45 DECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR 80
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.6 bits (65), Expect = 0.16
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
D+C + C + +CK+ + YEC C G+E GK C
Sbjct: 4 DQCE--SNPCLNGGSCKDDINSYECWCPFGFE----GKNC 37
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.7 bits (67), Expect = 0.34
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC---LDAC 118
+EC C++ C +++ Y C C + G+ C
Sbjct: 98 NECE--VEPCKNGGICTDLVANYSCECPGEFM----GRNCQYKGGGH 138
Score = 25.8 bits (57), Expect = 6.4
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 77 DECALEDHGCEH--TCKNIL--GGYECSCKIGYELHSDGKIC 114
D C + CE+ C L G + C C G+ C
Sbjct: 1 DICD--PNPCENGGICLPGLADGSFSCECPDGFT----DPNC 36
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET:
FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB:
1umf_A
Length = 365
Score = 29.4 bits (67), Expect = 0.71
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 7 SFEIENHDQCTYDYVEIRD----GHA 28
F I N + DY I++ HA
Sbjct: 80 GFLIHNQRARSKDYDNIKNLFRPSHA 105
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 29.0 bits (66), Expect = 0.91
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 7 SFEIENHDQCTYDYVEIRD----GHA 28
+ + N + + DY ++D HA
Sbjct: 79 AIVVFNENAHSKDYDNLKDLFRPAHA 104
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 28.6 bits (65), Expect = 1.2
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 7 SFEIENHDQCTYDYVEIRD----GHA 28
+ I+N DQ +DY ++ HA
Sbjct: 80 AMMIKNEDQRPHDYSDMDKFPRPSHA 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.5
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 40/112 (35%)
Query: 3 LKFQSFEIENHDQCTYD-------------YVEIRDGHA------PDSP--------IIG 35
L + S +E +D Y+E D HA ++ +I
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 36 TY---CGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIF----MKE--FDE 78
Y P K S + L + V +G+ Q AIF + F+E
Sbjct: 125 NYITARIMAKRPFDKKSNSAL-FRAVGEGNAQ---LVAIFGGQGNTDDYFEE 172
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 26.3 bits (57), Expect = 1.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 89 TCKNILGGYECSCKIGYELHSDGK 112
TCK GY C C GY + DG
Sbjct: 26 TCKETNSGYICRCNQGYRISLDGT 49
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine,
ligase, transferase; HET: BTN; 1.80A {Escherichia coli}
SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 26.4 bits (59), Expect = 2.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 25 DGHAPDSPIIGTYCGYKLP-PDIKSSGTKLMIKFVSDGSVQKPG 67
GH SP++GT+ Y+ P PD K+ F+ G G
Sbjct: 3 SGHIVRSPMVGTF--YRTPSPDAKA--------FIEVGQKVNVG 36
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase,
propeller, catalysis; 1.50A {Bacillus subtilis} SCOP:
b.67.2.1
Length = 293
Score = 26.9 bits (60), Expect = 4.8
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 91 KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLY 138
K+I G Y GK L+ G IL++ N P D+
Sbjct: 221 KSITGPYL---------DKSGKSMLEGGGTILDSGNDQWKGPGGQDIV 259
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 26.9 bits (59), Expect = 4.9
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIK-NKTCIWEIVAPPQYRISLNFTHFDIEGNN 169
G NG L + D+ + W + A + F I N
Sbjct: 330 SLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVN 382
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 5.4
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 11/24 (45%)
Query: 27 HAPDS-PIIGTYCGYKLPPDIKSS 49
+A DS P + IK++
Sbjct: 32 YADDSAPALA----------IKAT 45
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 26.2 bits (57), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 4/21 (19%)
Query: 107 LHSDGKICLDACGGILNTPNG 127
L++DGK+CL ILNT +G
Sbjct: 162 LYNDGKVCLS----ILNTWHG 178
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 25.6 bits (56), Expect = 8.5
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSC 101
S PG AI+ K++ EC + C C
Sbjct: 85 ASSLNPGVDAIYCKQWPECVKK------------MSTNCIC 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 10.0
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 33/92 (35%)
Query: 115 LDACGGILNTPNGTL------TSP----SFPDLYIKNKTCIWEIVAPPQYRISLNFTHFD 164
L+ L T+P + I++ W+ N+ H +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWD-----------NWKHVN 351
Query: 165 IEG-NNLFQSSCE----------YDNLTVFSK 185
+ + +SS +D L+VF
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.444
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,077,384
Number of extensions: 177206
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 167
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)