RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11864
(193 letters)
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 56.0 bits (135), Expect = 6e-12
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
+EC C N G Y C C +EL+ C+D
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 55.7 bits (134), Expect = 7e-12
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 77 DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
DEC + E C+H C N LGG+ CSC+ GY LH + + C +
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 55.6 bits (134), Expect = 8e-12
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGIL 122
C+L++ GC+ C+ CSC GY L D K C+ CG
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT 48
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 55.5 bits (134), Expect = 8e-12
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
DEC + C C N+ GGY+C C+ G++L K C
Sbjct: 2 DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 56.9 bits (136), Expect = 1e-11
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 4 KFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
+F+SF++E C YD +EI DG P IG YCG K P I+SS L + F
Sbjct: 33 EFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVF 92
Query: 58 VSDGSVQKPGFSAIF 72
+D ++ K GFSA +
Sbjct: 93 YTDSAIAKEGFSANY 107
Score = 51.9 bits (123), Expect = 1e-09
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 186
G + SP FP+ Y + C + + AP I L F FD+E ++ +
Sbjct: 1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60
Query: 187 GDSFKSQ 193
G
Sbjct: 61 GFPDVGP 67
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 54.0 bits (130), Expect = 3e-11
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
C+L++ GC H C +G CSC GY+L D C A
Sbjct: 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 41
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 54.0 bits (130), Expect = 4e-11
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
C+L++ C+ C CSC GY L +GK C+
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 53.2 bits (128), Expect = 6e-11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+EC + GC H C ++ GYEC C G++L + C
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 52.2 bits (125), Expect = 1e-10
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 77 DECA-LEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
+EC D C H C N +GGY CSC Y LH D K C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 51.4 bits (123), Expect = 2e-10
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 77 DECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL 115
DEC + C C N G Y C C G++L + C+
Sbjct: 3 DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 51.4 bits (123), Expect = 2e-10
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 77 DECALEDHG---CEHTCKNILGGYECSCKIGYELHSDGKIC 114
DEC C+H C N LGGY CSC++GY LH + C
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 50.9 bits (122), Expect = 4e-10
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 74 KEFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC 114
++ DEC C+ C N G ++C C GY L+ D ++C
Sbjct: 1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 50.6 bits (121), Expect = 6e-10
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 79 CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGI 121
C E+ GCE C + G C C GY L +DG C CG I
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 49
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 50.4 bits (120), Expect = 7e-10
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 77 DECALEDHGC--------EHTCKNILGGYECSCKIGYELHSDGKIC 114
DECA +H C N +GGY CSC+ GYEL D C
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 50.3 bits (120), Expect = 9e-10
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 75 EFDECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICL 115
+ L + GC++ C + C+C G L D + CL
Sbjct: 3 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 50.2 bits (120), Expect = 1e-09
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 79 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLDA----CGGI 121
C +++ CE CKN CSC GY L + K C A CG +
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRV 50
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 48.2 bits (115), Expect = 5e-09
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
DEC D C N G Y C C GY L G C+D
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 114
Score = 49.5 bits (117), Expect = 6e-09
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 118 CGG-ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 176
C G + +G L+SP +P Y K +C + I + I+L+F + ++ C
Sbjct: 1 CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH-PEAQCP 59
Query: 177 YDNLT 181
YD+L
Sbjct: 60 YDSLK 64
Score = 48.0 bits (113), Expect = 3e-08
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 8 FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPG 67
E+ QC YD ++I+ G +CG LPP I++ K+ I F +D S G
Sbjct: 50 VEMHPEAQCPYDSLKIQTDK----REYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTG 105
Query: 68 FSAIF 72
+ +
Sbjct: 106 WKIHY 110
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 49.5 bits (117), Expect = 7e-09
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 5 FQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIKFVSD 60
F F++E C YD+V++ G + + G S G+ L I F SD
Sbjct: 44 FTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSD 103
Query: 61 GSVQKP--GFSAIF 72
S +KP GF A +
Sbjct: 104 YSNEKPFTGFEAFY 117
Score = 45.2 bits (106), Expect = 3e-07
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 119 GGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
G L SP FP Y ++ W + APP YR+ L FTHFD+E ++L +
Sbjct: 3 PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDF 59
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 48.7 bits (115), Expect = 1e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 5 FQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIKFVSD 60
F +IE + C YD V+I G + + G + + KL + F SD
Sbjct: 39 FTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSD 98
Query: 61 GSVQK--PGFSAIF 72
S ++ GF+A +
Sbjct: 99 FSNEERFTGFAAYY 112
Score = 43.7 bits (102), Expect = 9e-07
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDI 165
G + SP++P Y W+I P Y I L FTH DI
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 45.5 bits (108), Expect = 4e-08
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYEL-HSDGKIC 114
DEC C C N+ G +EC C L G C
Sbjct: 3 DECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 45.2 bits (107), Expect = 6e-08
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 77 DECALEDHGCEH-TCKNILGGYECSCKIGYEL-HSDGKICL 115
DEC + C C N G +EC C GYE K C+
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 112
Score = 45.4 bits (106), Expect = 2e-07
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
D CG ++ +G++++ C W I+ P ++ + + ++ +
Sbjct: 7 DECGRVIKDTSGSISNTDRQ-----KNLCTWTILMKPDQKVRMAIPYLNLACGKEYVEVF 61
Query: 176 EYDN 179
+
Sbjct: 62 DGLL 65
Score = 33.5 bits (75), Expect = 0.004
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 13 HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIF 72
+ C +YVE+ DG G S+ + IK+ F F
Sbjct: 50 NLACGKEYVEVFDGLLSGPSYGKLCAGA--AIVFLSTANTMTIKYNRISGNSSSPFLIYF 107
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 109
Score = 41.5 bits (96), Expect = 5e-06
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 117 ACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF 171
ACGG L GT+ + P C+W + P+Y++ ++ ++ +
Sbjct: 5 ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTCGKEY 54
Score = 33.1 bits (74), Expect = 0.005
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 12 NHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAI 71
+ C +YVE+ +G P S +G +C + + + +K+ D + I
Sbjct: 46 LNLTCGKEYVEVLEGA-PGSKSLGKFCEG--LSILNRGSSGMTVKYKRDSGHPASPYEII 102
Query: 72 FMKE 75
F+++
Sbjct: 103 FLRD 106
>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 111
Score = 41.1 bits (95), Expect = 9e-06
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
CGGIL +G + + Y C+W I PP+Y + ++ + + N +
Sbjct: 7 CGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLNCNKESLEIIDG 61
Query: 178 DN 179
Sbjct: 62 LP 63
Score = 38.8 bits (89), Expect = 6e-05
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 12 NHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAI 71
C + +EI DG + G D +SSG+ + +K++ + + +
Sbjct: 47 LQLNCNKESLEIIDGLPGSPVLGKICEGS--LMDYRSSGSIMTVKYIREPEHPASFYEVL 104
Query: 72 FMKE 75
+ ++
Sbjct: 105 YFQD 108
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 37.4 bits (87), Expect = 4e-05
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 74 KEFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
++ DEC+L + CEH C N LG +EC C GY
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 35
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 34.4 bits (79), Expect = 4e-04
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 79 CALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICLD 116
CA H C C++ G+ C C Y +G+ C+
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVA 39
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 34.1 bits (78), Expect = 6e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 77 DECALEDHGCEHTCKNILGGYECSCKIGYE 106
DEC++ + TCKN++GG+EC+C+ G+E
Sbjct: 2 DECSVGNPCGNGTCKNVIGGFECTCEEGFE 31
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 29.3 bits (66), Expect = 0.028
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
D+C C++ CK+ LG Y C+C G+E GK C
Sbjct: 1 DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNC 34
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 29.2 bits (66), Expect = 0.033
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
D+C + C + +CK+ + YEC C G+E GK C
Sbjct: 4 DQCE--SNPCLNGGSCKDDINSYECWCPFGFE----GKNC 37
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.9 bits (65), Expect = 0.039
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106
DECA C H C + + ++C C G+
Sbjct: 1 DECA--SSPCLHNGRCLDKINEFQCECPTGFT 30
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.050
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106
+EC + C++ TC + +G ++C C GYE
Sbjct: 2 NECV--SNPCQNDATCLDQIGEFQCICMPGYE 31
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.1 bits (63), Expect = 0.078
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106
D+CA C++ +CK+ L Y C C +E
Sbjct: 3 DQCA--SSPCQNGGSCKDQLQSYICFCLPAFE 32
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.7 bits (59), Expect = 0.30
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106
C + C C + Y C C G+
Sbjct: 2 AACT--NTSCSGHGECVETINNYTCKCDPGFS 31
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 26.3 bits (58), Expect = 0.38
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 77 DECALEDHGCEH--TCKNILGGYECSCKIGYE 106
C D C C +G Y CSC G+
Sbjct: 2 ASCQ--DMSCSKQGECLETIGNYTCSCYPGFY 31
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Length = 158
Score = 27.5 bits (61), Expect = 0.65
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 93 ILGGYECSCKIGYELHSDGKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAP 151
IL G E + G HSDG + L A IL G + + T A
Sbjct: 20 ILCGVEVPYETGLVAHSDGDVVLHAISDAIL----GAMALGDIGKHF--PDTDAAYKGAD 73
Query: 152 PQYRISLNFTHFDIEGNNLFQSSCEY 177
+ + + +G L
Sbjct: 74 SRVLLRHCYALAKAKGFELGNLDVTI 99
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Escherichia coli [TaxId: 562]}
Length = 157
Score = 27.5 bits (61), Expect = 0.78
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 93 ILGGYECSCKIGYELHSDGKICLDAC 118
I+GG + G HSDG + L A
Sbjct: 20 IIGGVRIPYEKGLLAHSDGDVALHAL 45
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.2 bits (55), Expect = 1.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 77 DECALEDHGCEH-TCKNILGGYECSCKIGYE 106
CA C H TC + +G + C C+ G+E
Sbjct: 9 HPCA--SLCCGHGTCIDGIGSFSCDCRSGWE 37
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 163
Score = 26.7 bits (59), Expect = 1.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 93 ILGGYECSCKIGYELHSDGKICLDACG 119
+L G + +G + HSDG + +
Sbjct: 21 LLAGVQIHPTMGLKAHSDGDVLAHSLT 47
>d1iv3a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Thermus thermophilus [TaxId: 274]}
Length = 150
Score = 26.4 bits (58), Expect = 1.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 93 ILGGYECSCKIGYELHSDGKICLDAC 118
L G +G HSDG + A
Sbjct: 18 YLCGLLIPSPVGALAHSDGDAAMHAL 43
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 26.6 bits (58), Expect = 1.8
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 14/125 (11%)
Query: 47 KSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
+ +G +K + V + E ++ H I+ +
Sbjct: 26 RHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH------PFIIRMWGT------- 72
Query: 107 LHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
D + I +L S K E+ +Y S + + D++
Sbjct: 73 -FQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK 131
Query: 167 GNNLF 171
N+
Sbjct: 132 PENIL 136
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 25.2 bits (54), Expect = 5.9
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 14/137 (10%)
Query: 47 KSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
K SG +K + V K + E + + +
Sbjct: 63 KESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY 122
Query: 107 LHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
+ G + P + +IV +Y SL+ + D++
Sbjct: 123 VAGGEMFSHLRRIGRFSEP--------------HARFYAAQIVLTFEYLHSLDLIYRDLK 168
Query: 167 GNNLFQSSCEYDNLTVF 183
NL Y +T F
Sbjct: 169 PENLLIDQQGYIQVTDF 185
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 25.0 bits (54), Expect = 7.1
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 16/126 (12%)
Query: 47 KSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
+ + IK +S Q +KE H N + C Y
Sbjct: 37 VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH------PNTIQYRGC-----YL 85
Query: 107 LHSDGKICLDAC-GGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDI 165
+ ++ C G + ++ + Y S N H D+
Sbjct: 86 REHTAWLVMEYCLGSASDLLEVHKKPLQEVEI----AAVTHGALQGLAYLHSHNMIHRDV 141
Query: 166 EGNNLF 171
+ N+
Sbjct: 142 KAGNIL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.444
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,992
Number of extensions: 38632
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 66
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)