BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11866
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M7N8|SYCC_XENTR Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=cars
PE=2 SV=1
Length = 747
Score = 301 bits (771), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF+ND WVRYFLH+GHLTIAGCKMSKSLKNFITI+DAL K+TARQLRLAFL+HAW T
Sbjct: 381 EAYFDNDHWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALQKNTARQLRLAFLMHAWKDT 440
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS NTME AV YEK +NEFFLNVKD +R P F KW +LEL++ F K
Sbjct: 441 LDYSSNTMESAVQYEKFMNEFFLNVKDLLRA---PTDVTGQFVKWEVPELELNSCFYSKK 497
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVF 179
VH ALCDN+DTR+ ++ +R +SQ N Y+ + PN+LLLR + +Y+T +L VF
Sbjct: 498 AAVHEALCDNIDTRTVMEEMRSLVSQCNSYIASRKAAKQPPNRLLLRSVSSYLTAMLKVF 557
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G I + IGFP+GG+ S NLE V+PYL +LS+FR+ +R AR K TE+L D L
Sbjct: 558 GAIEGEEVIGFPIGGSD-NSMNLESTVMPYLQVLSQFREGVRQIARQHKVTEVLQLSDLL 616
Query: 240 RDEVLPNVGVRLEDIE 255
RD+VLP +GVRLED E
Sbjct: 617 RDDVLPELGVRLEDHE 632
>sp|Q4R550|SYCC_MACFA Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=CARS
PE=2 SV=1
Length = 748
Score = 300 bits (768), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 181/256 (70%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF ND WVRYFLH+GHLTI GCKMSKSLKNFITI+DAL KH+ARQLRLAFL+H+W T
Sbjct: 382 EAYFENDCWVRYFLHTGHLTITGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDT 441
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS NTME A+ YEK LNEFFLNVKD +R P FEKW + + EL+ F K
Sbjct: 442 LDYSSNTMESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKK 498
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIY------LRGTPNQLLLRDIGAYVTKILTVF 179
+H ALCDN+DTR+ ++ +R +SQ N+Y +R PN+ LL +I Y+T +L +F
Sbjct: 499 TAIHEALCDNVDTRTVMEEMRALVSQCNLYMAARKAMRKRPNRALLENIALYLTHMLKIF 558
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G I + ++GFP+GG+G S NLE V+PYL +LSEFR+ +R AR K E+L D L
Sbjct: 559 GAIEEESSLGFPVGGSGT-SLNLESTVMPYLQVLSEFREGVRKIAREQKVPEVLQLSDAL 617
Query: 240 RDEVLPNVGVRLEDIE 255
RD++LP +GVR ED E
Sbjct: 618 RDDILPELGVRFEDPE 633
>sp|Q5F408|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2
SV=1
Length = 748
Score = 300 bits (768), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 181/256 (70%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF ND+WVRYFLH+GHLTIAGCKMSKSLKNFITI+DAL KHTARQLRLAFL+H+W T
Sbjct: 382 EAYFENDNWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALQKHTARQLRLAFLMHSWKDT 441
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS NTME A+ YEK +NEFFLNVKD +R P F+KW + EL+ F K
Sbjct: 442 LDYSSNTMESAIQYEKFMNEFFLNVKDILRA---PTDVTGQFQKWENQEAELNKNFYDKK 498
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVF 179
+H ALCDN+DTRS L+ +R +SQ N Y+ R PN+LLL +I Y+T++L +F
Sbjct: 499 AAIHEALCDNVDTRSVLEEMRSLVSQSNSYIAAKKSARQMPNRLLLENISCYLTQMLKIF 558
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G I IGFP+GG ++ N+E V+PYL +LSEFR+ +R AR K TE+L D L
Sbjct: 559 GAIESDDAIGFPVGGNN-QNINIESTVMPYLQVLSEFREGVRQIAREKKVTEVLQLSDAL 617
Query: 240 RDEVLPNVGVRLEDIE 255
RD++LP +GVR ED E
Sbjct: 618 RDDILPELGVRFEDHE 633
>sp|P49589|SYCC_HUMAN Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1
SV=3
Length = 748
Score = 299 bits (765), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/256 (56%), Positives = 180/256 (70%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF ND WVRYFLH+GHLTIAGCKMSKSLKNFITI+DAL KH+ARQLRLAFL+H+W T
Sbjct: 382 EAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDT 441
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS NTME A+ YEK LNEFFLNVKD +R P FEKW + + EL+ F K
Sbjct: 442 LDYSSNTMESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKK 498
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVF 179
+H ALCDN+DTR+ ++ +R +SQ N+Y+ R PNQ LL +I Y+T +L +F
Sbjct: 499 TAIHKALCDNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKIF 558
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G + + ++GFP+GG G S +LE V+PYL +LSEFR+ +R AR K EIL D L
Sbjct: 559 GAVEEDSSLGFPVGGPGT-SLSLEATVMPYLQVLSEFREGVRKIAREQKVPEILQLSDAL 617
Query: 240 RDEVLPNVGVRLEDIE 255
RD +LP +GVR ED E
Sbjct: 618 RDNILPELGVRFEDHE 633
>sp|Q9ER72|SYCC_MOUSE Cysteine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Cars PE=1
SV=2
Length = 831
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 180/256 (70%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF ND WVRYFLH+GHLTIAGCKMSKSLKNFITI+DAL KH+ARQLRLAFL+H+W T
Sbjct: 465 EAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDT 524
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS NTME A+ YEK +NEFFLNVKD +R P FEKW ++EL+ F K
Sbjct: 525 LDYSSNTMESALQYEKFMNEFFLNVKDILRA---PVDITGQFEKWEAEEVELNKNFYGKK 581
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVF 179
VH ALCDN+DTR+ ++ +R +SQ N+Y+ R PN+ LL +I Y+T +L +F
Sbjct: 582 TAVHEALCDNIDTRTVMEEMRALVSQCNLYMAARKAERRRPNRALLENIAMYLTHMLKIF 641
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G I + +GFP+GG G + NLE V+PYL +LSEFR+ +R AR K E+L D L
Sbjct: 642 GAIEEESPLGFPVGGPGT-NLNLESTVMPYLQVLSEFREGVRKIAREKKVLEVLQLSDAL 700
Query: 240 RDEVLPNVGVRLEDIE 255
RD++LP +GVR ED E
Sbjct: 701 RDDILPELGVRFEDHE 716
>sp|Q7ZWR2|SYCC_XENLA Cysteine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=cars PE=2
SV=1
Length = 747
Score = 294 bits (753), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 184/256 (71%), Gaps = 10/256 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF+ND WVRYFLH+GHLTIAGCKMSKSLKNFITI+DAL K+TARQLRLAFL+H+W T
Sbjct: 381 EAYFDNDHWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALQKNTARQLRLAFLMHSWKDT 440
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS+NTME AV YEK +NEFFLNVKD +R P F KW ++EL+ F K
Sbjct: 441 LDYSNNTMESAVQYEKFMNEFFLNVKDLLRA---PTDITGQFVKWEVLEIELNNCFYSKK 497
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVF 179
+H ALCDN+DTR+ ++ +R +SQ N Y+ + PN++LLR I +Y+T +L VF
Sbjct: 498 AAIHEALCDNIDTRTVMEEMRSLVSQCNSYIASKKVAKQFPNRMLLRSISSYLTSMLKVF 557
Query: 180 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239
G I + IGFP+GG+ S NLE V+PYL +LS+FR+ +R AR K TE+L D L
Sbjct: 558 GAIEGEEVIGFPIGGSE-NSMNLESTVMPYLQVLSQFREGVRQIARQHKVTEVLQLSDLL 616
Query: 240 RDEVLPNVGVRLEDIE 255
RD++LP +GVRLED E
Sbjct: 617 RDDILPELGVRLEDHE 632
>sp|Q291L4|SYCC_DROPS Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura
pseudoobscura GN=Aats-cys PE=3 SV=1
Length = 741
Score = 283 bits (724), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 142/255 (55%), Positives = 180/255 (70%), Gaps = 8/255 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A FN WV+YFLH+GHLTIAGCKMSKSLKNF+TIQ+AL KH+A QLRLAFLLH+W T
Sbjct: 374 EAAFNESEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQEALKKHSATQLRLAFLLHSWKDT 433
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS+NTMEMA YEK LNEFFLNVKD R++ F+ WT + L +F ++
Sbjct: 434 LDYSENTMEMATQYEKFLNEFFLNVKDLTRHV-LSEEPRRQFDAWTDVEAALQKKFSSSQ 492
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI 182
VHAALCDN+DTRSALD+IR+ +S N+Y+R N LLLR++ Y+T +L VFG I
Sbjct: 493 VQVHAALCDNVDTRSALDAIRELVSASNVYIRDNKSRLNSLLLRNVATYITDLLHVFGAI 552
Query: 183 -GDVKNIGFPLG---GTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDR 238
G IGFP+ G +LE VLPY+ L+EFR+ +R +A+ +K+ +IL CD
Sbjct: 553 AGPRGGIGFPVSGGAGPQAAGGDLETTVLPYVQTLAEFRNLVREQAKALKAFDILKLCDD 612
Query: 239 LRDEVLPNVGVRLED 253
LRD +LPN+GVRLED
Sbjct: 613 LRDNILPNLGVRLED 627
>sp|Q7KN90|SYCC_DROME Cysteine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-cys PE=1 SV=1
Length = 741
Score = 280 bits (715), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 142/255 (55%), Positives = 179/255 (70%), Gaps = 8/255 (3%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A FN WV+YFLH+GHLTIAGCKMSKSLKNF+TIQ+AL KH+A QLRLAFLLH+W T
Sbjct: 374 EAAFNESEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQEALKKHSATQLRLAFLLHSWKDT 433
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
LDYS+NTMEMA YEK LNEFFLNVKD R++ F+ WT+ + L +F +
Sbjct: 434 LDYSENTMEMATQYEKFLNEFFLNVKDLTRHV-LSEEPRRQFDAWTEVEAALQKKFSNAQ 492
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI 182
VHA+LCDN+DTRSALD+IR+ +S N+Y+R N LLLR++ Y+T +L VFG I
Sbjct: 493 VQVHASLCDNIDTRSALDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFGAI 552
Query: 183 -GDVKNIGFPL---GGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDR 238
G IGFP+ G +LE VLPY+ L+EFR +R +A+ +K+ +IL CD
Sbjct: 553 SGPRGGIGFPVSGGSGAQAAGADLETTVLPYVQSLAEFRYLVREQAKTLKAFDILKLCDD 612
Query: 239 LRDEVLPNVGVRLED 253
LRD VLPN+GVRLED
Sbjct: 613 LRDNVLPNLGVRLED 627
>sp|Q54KR1|SYCC_DICDI Cysteine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=cysS PE=3 SV=1
Length = 660
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 18/257 (7%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A++ N W+ YF+HSGHL I G KMSKSLKNFITI+ AL K+T+RQ+R+ F+LH + +
Sbjct: 290 EAFYGNRQWINYFVHSGHLLIDGLKMSKSLKNFITIKQALEKYTSRQMRMFFILHKYDKA 349
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
++YS +M A+ EK EFF K +R+ + +S + WTQA+ +L+
Sbjct: 350 MNYSPESMGYAIEMEKTFVEFFHTAKQILRD-----SPLSLPQFWTQAEKDLNKHLQNAN 404
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLRG------TPNQLLLRDIGAYVTKILTVF 179
+ VH + DN +T AL ++ D +++ N+Y+R P L+ I Y+T I +VF
Sbjct: 405 DQVHQFILDNFNTSDALKTLSDLVNKTNVYIRSCAEQKTNPRLNLISAIAEYITYIFSVF 464
Query: 180 GCIGDVKN---IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQC 236
G IGF G G N+EE + P L L++FR +R A +T IL C
Sbjct: 465 GLTESSTASSMIGFGSAGKG----NIEEEMTPILNALTQFRSEVRASAIAKDTTSILKTC 520
Query: 237 DRLRDEVLPNVGVRLED 253
D LRDEVLP +GV+++D
Sbjct: 521 DNLRDEVLPLLGVKIDD 537
>sp|P53852|SYC_YEAST Cysteine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YNL247W PE=1 SV=1
Length = 767
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 149/255 (58%), Gaps = 11/255 (4%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A F+N W+ YFLH+GHL I G KMSKSLKNFITIQ+AL K + RQLRLAF W+
Sbjct: 403 EARFDNQQWINYFLHTGHLHIEGQKMSKSLKNFITIQEALKKFSPRQLRLAFASVQWNNQ 462
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSF-EKWTQADLELSTRFIQT 124
LD+ ++ + ++E +N FF IR LK A + +K++ + EL F+++
Sbjct: 463 LDFKESLIHEVKSFENSMNNFFKT----IRALKNDAASAGHISKKFSPLEKELLADFVES 518
Query: 125 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRD---IGAYVTKILTVFGC 181
++ VH+A CDN+ T AL ++ + +++ N Y+ L + I +Y+TKIL + G
Sbjct: 519 ESKVHSAFCDNLSTPVALKTLSELVTKSNTYITTAGAALKIEPLIAICSYITKILRIIGF 578
Query: 182 IGDVKNIGFP--LGGTGVESTNLEELVLPYLTILSEFRDNIRTEA-RLIKSTEILNQCDR 238
N+G+ G +LE+ V+PY+ LS FRD++R+ A + + E L D+
Sbjct: 579 PSRPDNLGWAAQAGSNDGSLGSLEDTVMPYVKCLSTFRDDVRSLAIKKAEPKEFLQLTDK 638
Query: 239 LRDEVLPNVGVRLED 253
+R+E L N+ V L+D
Sbjct: 639 IRNEDLLNLNVALDD 653
>sp|Q09860|SYC_SCHPO Probable cysteine--tRNA ligase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC29E6.06c PE=3 SV=1
Length = 754
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 143/257 (55%), Gaps = 14/257 (5%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF+ WV YF H+GHL I G KMSKSLKNFITI++ L K T RQLRLAFLL W+
Sbjct: 384 EAYFDCPQWVNYFFHAGHLHIEGQKMSKSLKNFITIKEILKKFTPRQLRLAFLLQQWNTQ 443
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLK-FPATTVSSFEKWTQADLELSTRFIQT 124
LD+ + + + E+ L FF V+ + + A EK+ + ++EL +F QT
Sbjct: 444 LDFKETLLAYVLNIEQALENFFRTVRALMNETEGVSANGGHVPEKFDKLEIELLEKFQQT 503
Query: 125 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT---PNQLLLRDIGAYVTKILTVFGC 181
+ N H ALCD+ +T + I + ++Q NIY+R P LL I +++T +L +FG
Sbjct: 504 QQNTHLALCDSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASWITSMLQIFGL 563
Query: 182 I--GDVKNIGF-PLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIK--STEILNQC 236
G +G+ G+ E+T+ +PY+ +S FRD +R E + K S EIL C
Sbjct: 564 DENGHPNAVGWSSSKGSSSENTD----AMPYIRAVSSFRDRVR-ELCIAKASSQEILKAC 618
Query: 237 DRLRDEVLPNVGVRLED 253
D RD + +GV D
Sbjct: 619 DIFRDYDMAALGVSFND 635
>sp|Q8SRE0|SYC_ENCCU Cysteine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU08_0490 PE=1 SV=1
Length = 480
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 137/251 (54%), Gaps = 28/251 (11%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
QAYF + WV+ FLH+GHL I+G KMSKSLKNF TI++AL + RQLR+ FL H W++
Sbjct: 245 QAYFMQEPWVKCFLHTGHLNISGLKMSKSLKNFTTIKEALKTISPRQLRVLFLHHQWNKD 304
Query: 66 LDYSDNTMEMAVTYE-KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQT 124
++Y ++ A T E K+ N F++V + +R +FE AD E+
Sbjct: 305 MNYEKEHLKFAETIEKKIFN--FMSVAESMRK------NALAFETLENADREVLRELGNV 356
Query: 125 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TPNQLLLRDIGAYVTKILTVFGCIG 183
+ VHAAL DN+DT + + I + I+ N ++ +P+ +L+ + Y+ +I V G
Sbjct: 357 QEAVHAALLDNVDTPAVMKRIVEMINFTNARIKTISPSTVLV--VKDYIKEITDVLG--- 411
Query: 184 DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS-TEILNQCDRLRDE 242
L + + E+L+ +LS FR++IR AR + ++ L +CD +R E
Sbjct: 412 --------LSEEERQESPGEDLI---AQLLSNFRESIREMARRKEPYSKFLEKCDWIR-E 459
Query: 243 VLPNVGVRLED 253
+ + G +ED
Sbjct: 460 SIKDYGYIIED 470
>sp|Q54ZY3|SYCM_DICDI Probable cysteine--tRNA ligase, mitochondrial OS=Dictyostelium
discoideum GN=mcysS PE=3 SV=1
Length = 583
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 121/248 (48%), Gaps = 22/248 (8%)
Query: 14 WVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTM 73
W YF H GHL + KMSKSL N ITI+D L++++A LR L+H ++ L +SD T+
Sbjct: 321 WANYFFHIGHLILNNEKMSKSLGNVITIRDFLSRYSANSLRWICLIHKYNDPLSFSDETL 380
Query: 74 EMAVTYE-KLLNEFFLNVKDHIRN-LKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAA 131
++ ++ E K LN F + +R+ LK T+V+ +K +EL + +TK +
Sbjct: 381 QLCISKEIKFLNWFKI-----VRSKLKLEQTSVNKVKKTFNHSIELLNQLSETKYLIEKD 435
Query: 132 LCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFP 191
L D+ +T S + + + Q N + LL ++ YV IL +F G
Sbjct: 436 LKDDFNTPSVIKRLELLMKQTNESMNSIDTDLLF-NVQDYVESILNIF---------GLE 485
Query: 192 LGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS-----TEILNQCDRLRDEVLPN 246
+ + +E L L +FR +++ A+ KS ++I D+LR +
Sbjct: 486 VNSEISDHNKTDESNQFLLEKLLDFRSDVKNLAKNEKSLDQIKSKIYQITDQLRSDCQSE 545
Query: 247 VGVRLEDI 254
+ +R+ DI
Sbjct: 546 ISLRVSDI 553
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 31/244 (12%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
WVRY++H+G L + G KMSKSL NF+TI++AL ++ +RL L + LDY++
Sbjct: 249 EWVRYWMHTGFLMVNGEKMSKSLGNFVTIREALERYDPEVIRLFVLQRHYRSPLDYTEEG 308
Query: 73 MEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAA 131
+E A E+L N + N++ KW + + E + + A
Sbjct: 309 LEHAKNNLERLYNT--------LENIRVAMERAEISFKWGEEEFEAYEAIRDGRKKFYDA 360
Query: 132 LCDNMDTRSALDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIG 189
+ D+ +T AL ++ + + +N YL P + +LR + + VFG D
Sbjct: 361 MDDDFNTAEALKAVFEVSNAINRYLTQVEKPKESILRKAWEFFKMVSEVFGIFEDYFR-- 418
Query: 190 FPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV 249
E EE L + +L + R +R E + + D++RDE L N+G+
Sbjct: 419 --------EQKAGEEEAL--IKLLIDVRAQLRKERK-------FDLADKIRDE-LRNLGI 460
Query: 250 RLED 253
+LED
Sbjct: 461 QLED 464
>sp|B6YUQ3|SYC_THEON Cysteine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=cysS PE=3 SV=1
Length = 476
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 31/244 (12%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
WVRY+LH+G + ++G KMSKSL NF+TI++ L K++ +R L + LDY++
Sbjct: 249 EWVRYWLHTGFVMVSGEKMSKSLGNFVTIRELLQKYSPEVIRFFVLQKHYRSPLDYTEEG 308
Query: 73 MEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAA 131
++ A E+L N + N++ +W + + EL + + + A
Sbjct: 309 IQHAKNNLERLYNT--------LENIRVAMEKADVAFRWDEEEFELYETVREARKKFYDA 360
Query: 132 LCDNMDTRSALDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIG 189
+ D+ +T AL ++ + + VN YL P + +LR + + VFG D
Sbjct: 361 MDDDFNTAEALKAVFEVSNAVNRYLTKVEKPKESVLRKALEFFKIVSEVFGLFEDY---- 416
Query: 190 FPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV 249
F G E +E LV ++R E R ++ D++RDE L +G+
Sbjct: 417 FKEQKAGDEEALIELLV------------SVRAELRKQRN---FTLADKIRDE-LKALGI 460
Query: 250 RLED 253
+LED
Sbjct: 461 QLED 464
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 29/243 (11%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
WVRY+LH+G + + G KMSKSL NF+T+++ L +++ +RL L + LDY++
Sbjct: 249 EWVRYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRLFVLQKHYRSPLDYTEEG 308
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
++ A + L N++ +RN + KW++ D E + + + A+
Sbjct: 309 LQHAKNNLERLYNTLENIRIAMRNAELSY-------KWSEKDFEAYEAIREARKKFYDAM 361
Query: 133 CDNMDTRSALDSIRDCISQVNIYLR--GTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGF 190
D+ +T AL ++ + + +N Y+ P + +LR + + VFG D F
Sbjct: 362 DDDFNTAEALKAVFEVSNAINKYILEVDKPKESILRKALEFFKVVSEVFGIFEDY----F 417
Query: 191 PLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVR 250
G E +E +L E R +R E R + D++R+E L +G++
Sbjct: 418 KEEKKGEEEKLIE--------LLVEVRKQLRKEKR-------FDLADKIREE-LRKLGIQ 461
Query: 251 LED 253
LED
Sbjct: 462 LED 464
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 31/244 (12%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
WV Y++H+G L + G KMSKSL NF+T+++ L ++ +RL L + LDYS+
Sbjct: 249 EWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELLKRYNPEVIRLFVLQRHYRSPLDYSEEG 308
Query: 73 MEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAA 131
+E A E+L N + N++ + +W + + + + A
Sbjct: 309 IEHAKNNLERLYNT--------LENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEA 360
Query: 132 LCDNMDTRSALDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIG 189
+ D+ +T AL ++ + + +N YL P + +LR + + VFG D
Sbjct: 361 MDDDFNTAEALKAVFEVSNAINRYLTEVEKPKESILRKAWEFFKDVGEVFGLFEDY---- 416
Query: 190 FPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV 249
++ N EEL+ +L E R +R E + + D++R+E L +G+
Sbjct: 417 ----FKEQKAENDEELI----NLLVEVRAQLRKEKK-------FDLADKIREE-LRKLGI 460
Query: 250 RLED 253
+LED
Sbjct: 461 QLED 464
>sp|Q5UP36|SYC_MIMIV Cysteine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=CARS
PE=3 SV=1
Length = 509
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 29/248 (11%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
+W R F+H GHL I G KMSKSLKNF TI++ L+K + Q R F+ W Q +D++D
Sbjct: 267 TWTREFIHVGHLCIKGQKMSKSLKNFSTIKEMLDKINSNQFRWLFMSTKWKQQVDFTDGL 326
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
+ +A K L+ +N + + N F + V +K T L F + + +++ L
Sbjct: 327 ISIA----KELDFTVVNFVNRVSNYPFEVSDVEFNDKETL----LHDDFYRIQQRIYSYL 378
Query: 133 CDNMDTRSALDSIRDCISQVNIYLR-GTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFP 191
+ SI+ I N+YL PN+ ++ I Y+ +L G I V
Sbjct: 379 TE-FKFEMVARSIQHLIGTTNVYLDLPRPNESIVGKIRDYLLDLLDKLGFIYRV------ 431
Query: 192 LGGTGVESTNLEELVLPYLTILSEFRDNIRTEAR------LIKSTEILNQCDRLRDEVLP 245
G S +++L + IL E R +R R IK ++ + DR R+ LP
Sbjct: 432 --GNSSSSHKIKDL----MNILIETRSQLRQLTRNPDLSPGIKK-QLFDILDRQRNIQLP 484
Query: 246 NVGVRLED 253
++G+ LED
Sbjct: 485 DIGIILED 492
>sp|Q6LYD1|SYC_METMP Cysteine--tRNA ligase OS=Methanococcus maripaludis (strain S2 / LL)
GN=cysS PE=3 SV=1
Length = 476
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 32/250 (12%)
Query: 7 AYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTL 66
AY D WV Y+LH+G + + G KMSKSL NF+TI D +++ LR F+ + +
Sbjct: 243 AYSGKD-WVNYWLHTGFVMVNGEKMSKSLGNFVTIGDISKEYSPEILRFFFIQRHYRSPI 301
Query: 67 DYSDNTM-EMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
DY+ +M + EK+ N I N++ W + + L +K
Sbjct: 302 DYTAESMNHVKNNLEKIYNV--------IENIRISLEKSEKSRTWDENEFLLYDILKNSK 353
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLR--GTPNQLLLRDIGAYVTKILTVFGCIG 183
NN + A+ + +T AL S+ + + VN YL TP++ LL K L + IG
Sbjct: 354 NNFYNAMNSDFNTVKALKSVFEVSNGVNKYLSLTKTPSEGLL-------LKALDFYKIIG 406
Query: 184 DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEV 243
++ + ES++ +E ++T L E +R++ RL K+ E+ D++RD
Sbjct: 407 EIFGL---FENYFKESSDSDE--EEFVTFLIE----LRSDVRLQKNYEM---SDKIRDG- 453
Query: 244 LPNVGVRLED 253
L N+G ++ED
Sbjct: 454 LKNLGYQIED 463
>sp|A6UP68|SYC_METVS Cysteine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=cysS PE=3 SV=1
Length = 475
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 124/249 (49%), Gaps = 34/249 (13%)
Query: 9 FNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDY 68
++ +WV Y++H+G + + G KMSKSL NF+TI + K++ LRL F+ + +DY
Sbjct: 244 YSGKNWVNYWVHTGFVMVNGEKMSKSLGNFVTISEISKKYSPEVLRLFFIQRHYKSPIDY 303
Query: 69 SDNTMEMA-VTYEKLLNEFFLNVKDHIR-NLKFPATTVSSFEKWTQADLELSTRFIQTKN 126
++ +ME A + +KL NV + +R L+ P +V W + + +K
Sbjct: 304 TEESMEHAKASLQKL-----YNVIESVRIALENPVNSV-----WDENEAFFYNVLKNSKI 353
Query: 127 NVHAALCDNMDTRSALDSIRDCISQVNIYL--RGTPNQLLLRDIGAYVTKILTVFGCIGD 184
N + A+ + ++ +AL ++ + + V YL +PN LL K L F +G+
Sbjct: 354 NFYRAMDSDFNSVNALKTVFEVSNSVTKYLSVSKSPNVALL-------IKTLDFFKNVGE 406
Query: 185 VKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVL 244
+ + G +S+N++E L + L + RD++R++ D++RD L
Sbjct: 407 IFGL---FEGYFYKSSNVKEESL--IKFLVDLRDDLRSKKN-------YETSDKIRDG-L 453
Query: 245 PNVGVRLED 253
+G ++ED
Sbjct: 454 KELGYQIED 462
>sp|Q2KIF8|SYCM_BOVIN Cysteine--tRNA ligase, mitochondrial OS=Bos taurus GN=CARS2 PE=2
SV=1
Length = 555
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 32/266 (12%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63
+A+ W YFLHSGHL + G KMSKSLKN++TI+D L + RL L ++
Sbjct: 283 EAFHQCPQWGNYFLHSGHLHVKGGGEKMSKSLKNYVTIKDFLRSTSPDVFRLFCLRSSYR 342
Query: 64 QTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 123
+DYS+ + A + + F + + ++R + + Q D+ L R +
Sbjct: 343 SAIDYSEGALLEARSLLRATAAFVEDARAYLRG-QLAGGPI-------QEDV-LWERLGR 393
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYL-------RGTPNQLLLRDIGAYVTKIL 176
TK V AAL D+ DT A+D++ D + N L RG + +L GA V +
Sbjct: 394 TKAAVQAALADDFDTVRAVDAVMDLVHHGNRQLKAASEEPRGPRSPAVL---GAVVASVE 450
Query: 177 TVFGCIGD--VKNIGFPLGGTGVESTNL-EELVLPYLTIL------SEFRDNIRTEARLI 227
F +G + P G+ +L EELV L + E R + RL+
Sbjct: 451 HFFETVGVSLAERQCVPGAGSPAALYSLVEELVRFRLKVRQFALASGEAPGEARRQ-RLL 509
Query: 228 KSTEILNQCDRLRDEVLPNVGVRLED 253
+ +L CD LR ++ + G+ ++D
Sbjct: 510 ERQPLLEACDALRRDLAVH-GISIKD 534
>sp|Q6PA41|SYCM_XENLA Probable cysteine--tRNA ligase, mitochondrial OS=Xenopus laevis
GN=cars2 PE=2 SV=1
Length = 572
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63
+AY + W YFLH+GHL + G KMSKSLKN++TI++ L + LR+ L +
Sbjct: 294 EAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLKNYVTIKEFLKSFSPDHLRMFCLRSKYK 353
Query: 64 QTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 123
++YS +M AV L++ F + K +++ + V W R +
Sbjct: 354 SAVEYSKESMHDAVNTLHLISSFVDDAKAYLKG-QLICQPVQETLLW--------QRLNE 404
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQ-------LLLRDIGAYVTKIL 176
TK NV AA D+ DT A+D++ D I N L+ + ++ + +Y+ + L
Sbjct: 405 TKVNVKAAFSDDFDTPRAVDAVLDLIHHGNRQLKAVSKESSSPRSPIVYGAMVSYIEQFL 464
Query: 177 TVFG 180
+ G
Sbjct: 465 EIMG 468
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 32/252 (12%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A F ++ WV+Y+LH+G + + G KMSKSL NF+TI++ L ++ +R L +
Sbjct: 242 EACFGHE-WVKYWLHTGFVMVKGEKMSKSLGNFVTIRELLKRYEPEVIRFFVLQKHYRSP 300
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFI--Q 123
L+Y++ ++ A + L N++ +RN + +T +LE T I +
Sbjct: 301 LEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEI---------SYTWGELEFKTYEIIRE 351
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYL--RGTPNQLLLRDIGAYVTKILTVFGC 181
K + A+ D+ +T AL ++ + + +N YL P + +LR + + VFG
Sbjct: 352 GKRKFYEAMDDDFNTAEALKAVFEVANAINKYLTEANKPKESILRKALEFFKIVSEVFGV 411
Query: 182 IGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRD 241
D E T E + +L E R +R E R D +R+
Sbjct: 412 FEDY----------FREETKEREESEKLIELLVEVRKQLRKEKR-------YELADMIRE 454
Query: 242 EVLPNVGVRLED 253
E L +G++LED
Sbjct: 455 E-LKKLGIQLED 465
>sp|Q6DJ95|SYCM_XENTR Probable cysteine--tRNA ligase, mitochondrial OS=Xenopus tropicalis
GN=cars2 PE=2 SV=1
Length = 572
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63
+AY + W YFLH+GHL + G KMSKSL+N++T+++ L + Q R+ L +
Sbjct: 294 EAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLRNYLTVKEFLKSFSPDQFRMFCLRSKYK 353
Query: 64 QTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 123
++YS+ +M AV ++ F + K +++ + V W R +
Sbjct: 354 SAVEYSNGSMHDAVNTLHTISSFVDDAKAYMKG-QLICQPVQEALLW--------QRLNE 404
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQ-------LLLRDIGAYVTKIL 176
TK NV AA D+ DT A+D++ D I N L+ + ++ + +Y+ + L
Sbjct: 405 TKVNVKAAFSDDFDTPRAVDAVMDLIHHGNRQLKAVSKESNSPRSSVVYGAMISYIEQFL 464
Query: 177 TVFG 180
+ G
Sbjct: 465 EILG 468
>sp|A9AAN8|SYC_METM6 Cysteine--tRNA ligase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=cysS PE=3 SV=1
Length = 476
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 30/249 (12%)
Query: 7 AYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTL 66
AY D WV Y+LH+G + + G KMSKSL NF+TI+ ++ LR F+ + +
Sbjct: 243 AYSGKD-WVNYWLHTGFVMVNGEKMSKSLGNFVTIEGISKEYDPEILRFFFIQRHYRSPI 301
Query: 67 DYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKN 126
DY+ ++T+ K E NV I N++ W + ++ L +K
Sbjct: 302 DYTAE----SITHVKNNLEKIYNV---IENIRISLEKSEKSRVWGENEVLLYDILKNSKR 354
Query: 127 NVHAALCDNMDTRSALDSIRDCISQVNIYLR--GTPNQLLLRDIGAYVTKILTVFGCIGD 184
N + A+ + +T AL S+ + + VN YL TP++ LL K F +G+
Sbjct: 355 NFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLL-------LKAFDFFKIVGE 407
Query: 185 VKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVL 244
+ + T ES + EE + +F +R++ RL K+ E+ D++RD L
Sbjct: 408 IFGLFENYFKTSSESDD-EEFI--------KFLIELRSDLRLQKNYEM---SDKIRDG-L 454
Query: 245 PNVGVRLED 253
N+G ++ED
Sbjct: 455 KNLGYQIED 463
>sp|A6VG07|SYC_METM7 Cysteine--tRNA ligase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=cysS PE=3 SV=1
Length = 476
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 32/250 (12%)
Query: 7 AYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTL 66
AY D WV Y+LH+G + + G KMSKSL NFITI+D ++ LR F+ + +
Sbjct: 243 AYSGKD-WVNYWLHTGFVMVNGEKMSKSLGNFITIEDISKEYDPEILRFFFIQRHYRSPI 301
Query: 67 DYSDNTM-EMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
DY+ +M + EK+ N I N++ W + + L +K
Sbjct: 302 DYTAESMSHVKNNLEKIYNV--------IENIRISLEKSEKSGIWNENEFLLYDILKNSK 353
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLR--GTPNQLLLRDIGAYVTKILTVFGCIG 183
+N + A+ + +T AL S+ + + VN YL TP++ LL K F +G
Sbjct: 354 HNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLL-------LKAFDFFKIVG 406
Query: 184 DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEV 243
++ + F +N E V +F +R++ RL K+ E+ D++RD
Sbjct: 407 EIFGL-FENYFKESSESNDEGFV--------KFLIELRSDLRLQKNYEM---SDKIRD-G 453
Query: 244 LPNVGVRLED 253
L +G ++ED
Sbjct: 454 LKELGYQIED 463
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
WV Y+LH+G + + G KMSKSL NF+T+++ L +++ +R L + LDYS+
Sbjct: 249 EWVHYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRFFVLQKHYRSPLDYSEEG 308
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
++ A + L N++ + N + T W + D + + + + A+
Sbjct: 309 LQHAKNNLERLYNTLENIRIAMENAELAYT-------WDENDFKAYNSIKEARRKFYEAM 361
Query: 133 CDNMDTRSALDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFG 180
D+ +T AL ++ + + +N Y+ P + +LR + + +FG
Sbjct: 362 DDDFNTAEALKAVFEVSNAINKYITEAEKPKESVLRKAWEFFRTVGEIFG 411
>sp|Q9HA77|SYCM_HUMAN Probable cysteine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=CARS2 PE=1 SV=1
Length = 564
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 114/266 (42%), Gaps = 32/266 (12%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63
+ + + W YFLHSGHL G KMSKSLKN+ITI+D L + R L ++
Sbjct: 291 EVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKTFSPDVFRFFCLRSSYR 350
Query: 64 QTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 123
+DYSD+ M A L F + + +++ + +V W R
Sbjct: 351 SAIDYSDSAMLQAQQLLLGLGSFLEDARAYMKG-QLACGSVREAMLW--------ERLSS 401
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT------PNQLLLRDIGAYVTKILT 177
TK V AAL D+ DT +D+I N LR + P + GA ++
Sbjct: 402 TKRAVKAALADDFDTPRVVDAILGLAHHGNGQLRASLKEPEGPRSPAV--FGAIISYFEQ 459
Query: 178 VFGCIG-DVKNIGFPLGGTGVEST---------NLEELVLPYLTILSEFRDNIRTEARLI 227
F +G + N + + G G E+T + V + + E + R + +L+
Sbjct: 460 FFETVGISLANQQY-VSGDGSEATLHGVVDELVRFRQKVRQFALAMPEATGDARRQ-QLL 517
Query: 228 KSTEILNQCDRLRDEVLPNVGVRLED 253
+ +L CD LR + + G+ ++D
Sbjct: 518 ERQPLLEACDTLRRGLTAH-GINIKD 542
>sp|Q8BYM8|SYCM_MOUSE Probable cysteine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Cars2 PE=2 SV=2
Length = 551
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 118/269 (43%), Gaps = 38/269 (14%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63
+ + W YFLHSGHL + G KMSKSLKN+ITI+D L + RL L +
Sbjct: 276 EVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKTFSPDVFRLFCLRTNYR 335
Query: 64 QTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQ 123
++YSD+T+ A L F + + +++ T E+ D+ L R
Sbjct: 336 SAIEYSDSTLVEAKHLLLGLASFVEDARAYVKG----QLTCGPVEE----DV-LWERLTS 386
Query: 124 TKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIG 183
TK V AAL ++ DT A+++I D + N LR + A + TVFG I
Sbjct: 387 TKKAVKAALANDFDTPRAVNTILDLVHHANRQLRAVSKE-------ASGPRSPTVFGAII 439
Query: 184 D-----VKNIGFPLGGTGVESTNLEELVLPYLT-ILSEFRDNIRT----------EAR-- 225
+ +G L S + + L + L FR +R EAR
Sbjct: 440 SYVEQFFETVGISLANRQCVSGDSSTVTLRCVVDELVRFRLKVRQYALDTPGAAGEARKR 499
Query: 226 -LIKSTEILNQCDRLRDEVLPNVGVRLED 253
L + +L CD LR +++ + G+ ++D
Sbjct: 500 QLQERQPLLEACDTLRQDLVTH-GINVKD 527
>sp|A4WH15|SYC_PYRAR Cysteine--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM 13514
/ JCM 11321) GN=cysS PE=3 SV=1
Length = 476
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF D++ RY++H G+LT+ G KMSKSL N +T+++AL+K++ LRLA+ + + +
Sbjct: 247 KAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNVVTLREALSKYSGEALRLAYAMSHYRKP 306
Query: 66 LDYS----DNTMEMAVTYEKLLNEFFLNVKD 92
+++S D EMA T +E V D
Sbjct: 307 MEFSYEVLDQAEEMAKTIYTAYDELGQAVGD 337
>sp|A1RTJ7|SYC_PYRIL Cysteine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=cysS PE=3 SV=1
Length = 473
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 14/141 (9%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF D++ RY++H G+LT+ G KMSKSL N IT+++ L+KH+ LRLA+ + + +
Sbjct: 247 RAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNIITLREVLSKHSGEALRLAYAMSHYRKP 306
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLE-LSTRFIQT 124
++++ ++ A K L + + +R+ + D E L+ ++
Sbjct: 307 MEFTYELLQQAEDMAKTLYTAYDELSQALRDA-------------GEKDQEPLAQEALKY 353
Query: 125 KNNVHAALCDNMDTRSALDSI 145
+ AL D+M T A+ +
Sbjct: 354 AEAFYGALDDDMSTPEAVQQL 374
>sp|B1YA45|SYC_PYRNV Cysteine--tRNA ligase OS=Pyrobaculum neutrophilum (strain DSM 2338
/ JCM 9278 / V24Sta) GN=cysS PE=3 SV=1
Length = 474
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF D++ RY++H G+LT+ G KMSKSL N IT+++ L+KH+ LRLA+ + + +
Sbjct: 247 RAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNIITLREVLSKHSGEALRLAYAMSHYRKP 306
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
++++ ++ A K L + + +R+ E Q L+ + F
Sbjct: 307 MEFTYELLQQAEDMAKTLYTAYDELSQALRD-----AGEKDQEPIAQEALKYAGAF---- 357
Query: 126 NNVHAALCDNMDTRSALDSI 145
+ AL D+M T A+ +
Sbjct: 358 ---YGALDDDMSTPEAVQQL 374
>sp|A3DLW5|SYC_STAMF Cysteine--tRNA ligase OS=Staphylothermus marinus (strain ATCC 43588
/ DSM 3639 / F1) GN=cysS PE=3 SV=1
Length = 477
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+A F WV+Y++H+G + + KMSKSL N I +++A + LRL +L + +
Sbjct: 243 EAAFGVKPWVKYWVHTGMVMMGSEKMSKSLGNIIPLREAFKEWGPETLRLWYLTSHYRRP 302
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTK 125
L +++ ++ A Y E ++V + I+ L A S + DL++ + ++ +
Sbjct: 303 LVFTEESIRQAQKY----YERLVSVTNTIKKLSREAV---SLHRMNDEDLKILEKLLEIR 355
Query: 126 NNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDV 185
+ H AL ++ +T AL I + ++ V ++ P +L +LT + + +
Sbjct: 356 SRFHEALSNDFNTPQALAVISEFMTLVFKEIQYNPKYML----------VLTAYKLLREF 405
Query: 186 KNIGFPLGGTGVEST-NLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEV 243
+ L VE+ LE L+ + I+ + R R ++ ++ + DR+R E+
Sbjct: 406 NTVLGVLDKYLVETPEELETLLDNVINIVVDIR-------RELRERKLYDLADRIRSEL 457
>sp|Q8PVQ1|SYC_METMA Cysteine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=cysS
PE=3 SV=1
Length = 473
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 9/179 (5%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
+VR+++H HL + G KMSKS N T+ + + + +R FL + + LDYS+
Sbjct: 253 PFVRHWIHGEHLIVEGEKMSKSKGNVFTLPEIVEMYGGEVVRFMFLSVHYRKKLDYSETF 312
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
E A +L +K+ + NL+F V ++ DLE + +N AL
Sbjct: 313 AENA-------KNNYLKLKETLDNLEFALKNVE--DEPGPGDLETLKTLPELENRFREAL 363
Query: 133 CDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFP 191
D+ +T A+ R+ N+YL N +L +I A + G P
Sbjct: 364 EDDFNTPKAITVFRELSRTANVYLETGKNMQVLEEIHALYKRFSDTLGIFAKAGGEEVP 422
>sp|O67163|SYC_AQUAE Cysteine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=cysS PE=3
SV=1
Length = 495
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 45/260 (17%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
+ RY++H+G +T+ G KMSKSL N++T+++ K+ LRL L + LD+S
Sbjct: 249 PFARYWMHNGLVTVGGQKMSKSLGNYVTLREVYTKYHPDVLRLLVLFTHYRSPLDFSWEK 308
Query: 73 MEMAV-TYEKLLNEFFLNVKDHIRNLKF--PATTVSSFEKWTQADLELSTRFIQTKNNVH 129
ME + YE+L K+ I +L+ V S E T E F + N +
Sbjct: 309 MEETLKAYERL--------KNAIEDLELLKKLQVVESKEGGTHPLYEQVKEF---EENFY 357
Query: 130 AALCDNMDTRSALDSIRDCISQVN-----IYLRGTPNQLLLRDIGAY-------VTKILT 177
A+L D+ +T AL + + ++N Y G ++ R++ AY + +
Sbjct: 358 ASLSDDFNTPEALSHVYKLVGELNKVKNKAYSEG---KITDRELSAYEFASKSLLNTMKK 414
Query: 178 VFGCIGDVKNIGFPLGGTGVESTNLEELV---LPYLTILSEFRDNIRTEARLIKSTE-IL 233
+FG + D+ +P +E +V L + E I EAR I E +
Sbjct: 415 IFGLLEDL----YP-------ECKVERVVERELEAGQVFDEKLIQILIEARNIARKEKVF 463
Query: 234 NQCDRLRDEVLPNVGVRLED 253
D +RD+ L +G+ LED
Sbjct: 464 KVADYIRDK-LKELGIVLED 482
>sp|Q2RWK2|SYC_RHORT Cysteine--tRNA ligase OS=Rhodospirillum rubrum (strain ATCC 11170 /
NCIB 8255) GN=cysS PE=3 SV=1
Length = 459
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
++ RY++H+G+L + G KMSKSL NF+T++D L++ +RLA L + Q D++
Sbjct: 250 TFARYWMHNGYLMVEGEKMSKSLGNFVTVRDLLDQAPGEAMRLAMLGTHYRQPFDWTAEG 309
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
+E A + L+ + ++ PA + V AAL
Sbjct: 310 LEQA---RRGLDRLYSALRRVAGIAASPA---------------------EVPEGVMAAL 345
Query: 133 CDNMDTRSALDSIRDCISQVN 153
CD+++T AL + D + +N
Sbjct: 346 CDDLNTPKALAEVYDLLGVLN 366
>sp|B7JUH4|SYC_CYAP8 Cysteine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=cysS
PE=3 SV=1
Length = 484
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 36/246 (14%)
Query: 15 VRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTME 74
RY+LH+G + + G KMSKSL NFITI+D L+K +RL L + + +D++D +E
Sbjct: 257 ARYWLHNGMVKVEGEKMSKSLGNFITIRDLLDKVDPMAMRLFILQAHYRKPVDFTDEALE 316
Query: 75 MAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCD 134
A L E L +H + L F A+ L+ RF Q A+ D
Sbjct: 317 AATNGWHTLKEGLLFGYNHGKQLNFTASPPHPL-----TSSPLTQRFQQ-------AVDD 364
Query: 135 NMDTRSAL----DSIRDCISQVNIYLRGTPNQL---LLRDIGAYVTKILTVFGCIGDVKN 187
+ + L + ++ + NI + + +L + + ++ V G D+
Sbjct: 365 DFNFAGGLAILFEIAKELRKEGNILVHQGQTETSPQVLEEQWRTLVELAGVLGLETDISE 424
Query: 188 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 247
+ + G G+ +EEL+ + ++ + + + DRLRDE L N
Sbjct: 425 VQEAV-GNGLSDAEIEELI---------------EQRKIARQNKNYAEGDRLRDE-LKNQ 467
Query: 248 GVRLED 253
G+ L D
Sbjct: 468 GIILVD 473
>sp|A6UWT0|SYC_META3 Cysteine--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=cysS PE=3 SV=1
Length = 479
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 26/249 (10%)
Query: 9 FNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDY 68
+ + WV Y++H+G + + KMSKSL NF T++D K++A +R L + LDY
Sbjct: 243 YTDKKWVNYWIHTGFVMVNNEKMSKSLGNFSTLKDLFEKYSAELIRFFLLERHYSSPLDY 302
Query: 69 SDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNN- 127
+++ + + L N+ RN + K+ +++ +T I+T +N
Sbjct: 303 TEDAINHSKNNLDKLYNTIQNITVAFRNSEI---------KYKLNEIDKNT--IETIHNC 351
Query: 128 ---VHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGD 184
+ A+ DN +T AL + + + +N Y+ N L + + + K F +G+
Sbjct: 352 TEKFYTAMDDNFNTAQALKYVFEVSTAINKYINNYANSDELPNY-SIILKSYEFFKMVGE 410
Query: 185 VKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVL 244
+ I +TN+ E L + IL E R +++ E N D++RD+ L
Sbjct: 411 IFGIFGSSTINTATNTNIAEENL--INILMELRADLKKEKN-------YNLSDKIRDK-L 460
Query: 245 PNVGVRLED 253
+ + LED
Sbjct: 461 KEMDIILED 469
>sp|A3MS54|SYC_PYRCJ Cysteine--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548
/ VA1) GN=cysS PE=3 SV=1
Length = 473
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 50/71 (70%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AYF D++ +Y++H G+LT+ G KMSKSL N IT+++ L+K++ LRLA+ + + +
Sbjct: 247 KAYFGVDNFAKYWIHVGYLTVRGEKMSKSLGNVITLREVLSKYSGEALRLAYAMSHYRKP 306
Query: 66 LDYSDNTMEMA 76
+++S ++ A
Sbjct: 307 MEFSFELLDQA 317
>sp|Q96YC3|SYC_SULTO Cysteine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=cysS PE=3 SV=2
Length = 468
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 14 WVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTM 73
WV+Y++H +LTI KMSKSL N I + +AL K LR +L + +LD++++++
Sbjct: 248 WVKYWVHVSYLTIRKEKMSKSLGNIIPLNEALKKWGPSVLRYWYLSSHYRSSLDFNEDSL 307
Query: 74 EMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 133
E A L + ++D I+ + K D+++ ++ + HAA+
Sbjct: 308 EQAKNALTRLKDAISIIRDVIKE------GPKYYSK--DEDIQVQRNIVELIKSFHAAMS 359
Query: 134 DNMDTRSALDSIRDCISQV 152
++ DT AL I + +S V
Sbjct: 360 EDFDTAKALSYIHEIVSLV 378
>sp|Q9YBK6|SYC_AERPE Cysteine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=cysS PE=3 SV=2
Length = 472
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
++YF + WVRY+LH+ +LTI G KMSKSL N I +++AL + LRL L +
Sbjct: 241 ESYFGH-RWVRYWLHASYLTIKGEKMSKSLGNIIPLREALREWGPGPLRLWLLSSHYRSN 299
Query: 66 LDYSDNTMEMAVTYEKLLNEFFLNVKDHI-RNLKFPATTVSSFEKWTQADLELSTRFIQT 124
LDYS E A+ + L E D I R L+ + + +LE R
Sbjct: 300 LDYS----EEALGQYRRLYERLRQAADSIGRRLE----RAEPKGRLGEGELETVERLKGV 351
Query: 125 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLR 157
H A+ D+ + A+ S+ + + IY R
Sbjct: 352 VRRWHEAMSDDFNMGKAMSSLWEFTT---IYFR 381
>sp|Q8ZYD8|SYC_PYRAE Cysteine--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC 51768
/ IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=cysS PE=3
SV=1
Length = 474
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
+AY+ D++ +Y++H G+LT+ G KMSKSL N IT+++ L+K++ LRLA+ + + +
Sbjct: 249 KAYYGLDNFAKYWIHVGYLTVRGEKMSKSLGNVITLREVLSKYSGEALRLAYAMSHYRKP 308
Query: 66 LDYS----DNTMEMAVTYEKLLNEFFLNVKD 92
+++S D EM T +E V D
Sbjct: 309 MEFSFELLDQAEEMVKTLYTAYDELSQAVAD 339
>sp|Q8TSP6|SYC_METAC Cysteine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=cysS PE=3 SV=1
Length = 473
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 18 FLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAV 77
++H HL + G KMSKS +N T+ + + K+ +R FL + + LDYS+ E A
Sbjct: 258 WIHGEHLIVEGEKMSKSKRNVFTLPEIVEKYGGEVVRFMFLSVHYRKKLDYSEAFAENA- 316
Query: 78 TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMD 137
+L +K+ + NL+F + + +K DLE + + AL D+ +
Sbjct: 317 ------KNNYLRLKETLDNLEF--SLKGADDKSYPGDLETLKALPELETQFRHALEDDFN 368
Query: 138 TRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFP 191
T AL R+ N+YL N+ +L + K V G P
Sbjct: 369 TPRALTVFRELSRTANLYLEAGKNRKVLEKVHTLYRKFSDVLGLFAQAGKEEIP 422
>sp|A5FP90|SYC_DEHSB Cysteine--tRNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=cysS
PE=3 SV=1
Length = 457
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 14 WVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTM 73
+V+Y+LH+G L + KMSKSL N +TI++AL++++A LR+ L ++ L YS+ +
Sbjct: 249 FVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSRYSADALRIFVLSSSYRNPLTYSEEAL 308
Query: 74 EMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 133
E A + L + KD N +F TTV T+A E T+++ N AAL
Sbjct: 309 EAAEKGAERLRQTAAR-KD---NPQFKETTVD-----TKAYRERFTQYMDNDFNTSAALA 359
Query: 134 DNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLG 193
D L+ I + T Q L +++ IL + + + K
Sbjct: 360 TIFDLSRELNRIEGEAG------KSTDGQKLFKEL----ADILGLSLIVAESK------- 402
Query: 194 GTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLED 253
TG + V P++ +L E R ++R + D++R L G+ LED
Sbjct: 403 -TGTD-------VAPFIELLIELRKDLRVAKQ-------YQLADKIRTS-LDTAGILLED 446
>sp|Q97WE6|SYC_SULSO Cysteine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=cysS PE=3 SV=1
Length = 470
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 35/246 (14%)
Query: 11 NDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSD 70
+ WV Y++HS +TI KMSKSL N I + +A+ K LR +L + +D+S+
Sbjct: 247 GEKWVTYWVHSAFVTIRKEKMSKSLGNIIPLNEAIKKWGPSVLRYWYLTSHYRSPIDFSE 306
Query: 71 NTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHA 130
+E A + + + + ++D I + P V D+++ + NN H
Sbjct: 307 EALEQAKSALQRIKDSMAIIRDVIS--EGPKFYVKD------DDIKVYREILNNLNNFHT 358
Query: 131 ALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGF 190
A+ ++ DT +AL I + + V L+ + + L + + VFG
Sbjct: 359 AMSNDFDTSTALSYIHEIVRLVFSTLQYSRDFLGAMLAFETLKQFNEVFGV--------- 409
Query: 191 PLGGTGVESTNLEELVLPYLTILSEFRD---NIRTEARLIKSTEILNQCDRLRDEVLPNV 247
++E P + + D +IR + R +K EI D++R+E+L
Sbjct: 410 -----------MDEEFYPTYDKMYKIIDAVVDIRNQLRQMKLYEI---SDKIREELL-KA 454
Query: 248 GVRLED 253
GVR+ D
Sbjct: 455 GVRILD 460
>sp|A8GM31|SYC_RICAH Cysteine--tRNA ligase OS=Rickettsia akari (strain Hartford) GN=cysS
PE=3 SV=1
Length = 459
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 50/237 (21%)
Query: 9 FNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLD 67
F + ++ +Y++H+G LT+ G KMSKSL NFIT++D ++K + ++ FLL + + + LD
Sbjct: 253 FPDSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMDKDISGEVVRLFLLSSHYRRPLD 312
Query: 68 YSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNN 127
Y+D +E A + + W +A ++ + I +N
Sbjct: 313 YNDKAIEDA---------------------------KKTLDYWYRAIENINVQKIDLPHN 345
Query: 128 VHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 187
+L D+M+T A+ I D V ++ T + R + A V I+T IG +
Sbjct: 346 FMQSLLDDMNTPLAVKIINDYAKGV--FIAKTEKE---RQLNASV--IITCANFIGLMNQ 398
Query: 188 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVL 244
+GV+S + ELV N R EA+ K+ + D++R+++L
Sbjct: 399 TPHEWFNSGVDSLYINELV------------NKRLEAKKQKNWLL---ADQIRNQLL 440
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 12/175 (6%)
Query: 10 NNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYS 69
N + Y++H+G + I KMSKSL NF TI++ L K+ A LR L + +D+S
Sbjct: 246 NGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRSPIDFS 305
Query: 70 DNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVH 129
D + A E L + + NL A + + D EL+ + +
Sbjct: 306 DQNLREA---EAGLERIYGTLAGIDENLTKGAEGTAE-----ETDRELAEKAVTFPERFR 357
Query: 130 AALCDNMDTRSALDSIRDCISQVNIYL----RGTPNQLLLRDIGAYVTKILTVFG 180
A+ D+ +T AL + D + N L G N+ LL + + K+ V G
Sbjct: 358 EAMDDDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRALLAEARDRIRKVGAVLG 412
>sp|C0QRE6|SYC_PERMH Cysteine--tRNA ligase OS=Persephonella marina (strain DSM 14350 /
EX-H1) GN=cysS PE=3 SV=1
Length = 487
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 9 FNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDY 68
++ + RY++H+G +T+ G KMSKSL N+IT+++ +K+ LRL L + LD+
Sbjct: 245 LSDKPFARYWIHNGLVTVNGQKMSKSLGNYITLKEIYSKYDPDVLRLLVLSVHYRSPLDF 304
Query: 69 SDNTM-EMAVTYEKL---LNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQT 124
S M E YE+L ++E+ + +K N F D L +
Sbjct: 305 SWEKMEETKKAYERLKGAIDEYEI-LKKLPENPDF--------------DEHLYDEIAKA 349
Query: 125 KNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRD----IGAYVTKILTVFG 180
+ +AA+ D+ +T AL S+ + ++NI LRD G K L +
Sbjct: 350 EQGFYAAMSDDFNTPEALASLFTLVREMNI----------LRDKAVKSGGISKKALESYK 399
Query: 181 CIGDV-KNIGFPLGG--------TGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTE 231
DV +IG + G VE +E+ T L E +R +AR K E
Sbjct: 400 EASDVLHSIGKEIFGLFDSLQPCIEVEEIKVEKAEEKIDTQLVEALIEVRNKARKEKQFE 459
Query: 232 ILNQCDRLRDEVLPNVGVRLED 253
I D +R E L +G+ +ED
Sbjct: 460 I---ADYIR-EKLSQLGIVIED 477
>sp|Q4JCA6|SYC_SULAC Cysteine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=cysS PE=3 SV=1
Length = 469
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 14 WVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTM 73
WV+Y++H +LTI KMSKSL N I + +AL K LR +L + ++DYS+ T+
Sbjct: 249 WVKYWVHVAYLTINKEKMSKSLGNIIPLNEALKKWGPSVLRFWYLSTKYRNSIDYSEQTL 308
Query: 74 EMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 133
E A + + L + ++ I+ P + + E TQ ++ I H A+
Sbjct: 309 EQARSSLQRLKDAMGIIRSVIKEE--PKSHSNEEEISTQREI------ISLIGKFHEAMS 360
Query: 134 DNMDTRSALDSIRDCISQV 152
++ DT +AL +I + + V
Sbjct: 361 NDFDTATALSNIYEIANLV 379
>sp|Q5GZD9|SYC_XANOR Cysteine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=cysS PE=3 SV=1
Length = 476
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT 72
++ R++LH+G L +G KMSKSL N T+ D + KH LR A L + Q LD+SD
Sbjct: 252 TFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKHPPEALRYALLSAHYRQPLDWSDGL 311
Query: 73 MEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAAL 132
+E A L+ + ++D +++ E + +E+S V +AL
Sbjct: 312 IEQATN---TLDRLYGTLRD-----------LAALEACGSSGVEVSKTI---PVEVESAL 354
Query: 133 CDNMDTRSALDSIRDCISQV 152
D+++T AL I S+
Sbjct: 355 QDDLNTPLALSVIASIASEA 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,022,685
Number of Sequences: 539616
Number of extensions: 3312938
Number of successful extensions: 10263
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 9233
Number of HSP's gapped (non-prelim): 1051
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)