Query psy11866
Match_columns 255
No_of_seqs 237 out of 1843
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:57:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 7.2E-50 1.6E-54 356.3 17.4 215 2-255 240-456 (464)
2 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.1E-47 2.5E-52 362.4 24.0 243 2-255 287-539 (651)
3 KOG2007|consensus 100.0 7.4E-48 1.6E-52 340.0 19.0 236 2-255 277-515 (586)
4 PRK00260 cysS cysteinyl-tRNA s 100.0 8.1E-45 1.7E-49 333.5 19.6 218 1-255 238-455 (463)
5 PLN02946 cysteine-tRNA ligase 100.0 1.5E-44 3.2E-49 332.9 17.3 235 2-255 296-537 (557)
6 PRK14535 cysS cysteinyl-tRNA s 100.0 7.3E-44 1.6E-48 330.4 19.0 212 2-255 465-691 (699)
7 TIGR00435 cysS cysteinyl-tRNA 100.0 3.8E-42 8.2E-47 315.3 19.7 221 1-255 237-458 (465)
8 PRK14536 cysS cysteinyl-tRNA s 100.0 4.1E-42 8.9E-47 313.6 19.1 228 2-255 252-482 (490)
9 PRK14534 cysS cysteinyl-tRNA s 100.0 1.1E-40 2.3E-45 303.0 19.6 221 2-255 252-473 (481)
10 PRK12418 cysteinyl-tRNA synthe 100.0 3.7E-32 8E-37 241.8 10.7 132 1-158 232-364 (384)
11 TIGR03447 mycothiol_MshC cyste 100.0 1.6E-31 3.5E-36 238.8 10.2 130 1-156 259-389 (411)
12 PF01406 tRNA-synt_1e: tRNA sy 99.9 3E-28 6.5E-33 208.1 4.6 76 2-78 225-300 (300)
13 PRK11893 methionyl-tRNA synthe 99.9 2.8E-26 6E-31 214.3 17.3 176 2-182 273-458 (511)
14 TIGR00395 leuS_arch leucyl-tRN 99.9 3.1E-26 6.7E-31 225.8 17.6 148 2-158 592-741 (938)
15 KOG0436|consensus 99.9 3.3E-26 7.2E-31 199.3 12.0 172 11-185 325-512 (578)
16 PRK12300 leuS leucyl-tRNA synt 99.9 3.4E-25 7.3E-30 217.7 17.1 145 2-158 549-695 (897)
17 COG0143 MetG Methionyl-tRNA sy 99.9 1.2E-24 2.6E-29 201.2 18.2 170 12-184 315-496 (558)
18 PRK12267 methionyl-tRNA synthe 99.9 1.4E-24 3.1E-29 207.6 18.4 144 12-158 281-427 (648)
19 PLN02610 probable methionyl-tR 99.9 2.4E-24 5.1E-29 208.2 17.8 143 13-158 331-483 (801)
20 PLN02224 methionine-tRNA ligas 99.9 4.5E-24 9.8E-29 200.9 18.0 144 12-158 348-494 (616)
21 PRK13208 valS valyl-tRNA synth 99.9 2.1E-24 4.5E-29 210.7 16.4 151 1-158 504-657 (800)
22 PLN02843 isoleucyl-tRNA synthe 99.9 3.5E-24 7.5E-29 211.5 16.8 154 1-158 582-747 (974)
23 PRK13804 ileS isoleucyl-tRNA s 99.9 3.1E-24 6.6E-29 211.9 16.3 154 2-158 602-758 (961)
24 PLN02943 aminoacyl-tRNA ligase 99.9 9.3E-24 2E-28 208.4 17.3 154 1-158 554-722 (958)
25 PLN02882 aminoacyl-tRNA ligase 99.9 8.9E-24 1.9E-28 211.0 17.1 154 1-158 585-752 (1159)
26 PRK05743 ileS isoleucyl-tRNA s 99.9 7.1E-24 1.5E-28 208.7 15.4 151 2-158 564-720 (912)
27 TIGR00398 metG methionyl-tRNA 99.9 2.9E-23 6.2E-28 194.7 18.5 169 12-183 309-486 (530)
28 PRK12268 methionyl-tRNA synthe 99.9 2.2E-23 4.8E-28 196.5 16.9 143 12-158 316-461 (556)
29 PRK14900 valS valyl-tRNA synth 99.9 2.6E-23 5.7E-28 206.6 17.0 151 2-158 510-667 (1052)
30 PRK05729 valS valyl-tRNA synth 99.9 2.5E-23 5.5E-28 204.6 16.4 153 1-158 491-648 (874)
31 COG0060 IleS Isoleucyl-tRNA sy 99.9 1.2E-23 2.7E-28 202.3 12.4 152 4-158 576-730 (933)
32 PRK00133 metG methionyl-tRNA s 99.9 8.7E-23 1.9E-27 195.8 18.1 140 12-158 311-454 (673)
33 TIGR00422 valS valyl-tRNA synt 99.9 5.4E-23 1.2E-27 202.2 16.5 152 1-158 496-652 (861)
34 PTZ00427 isoleucine-tRNA ligas 99.9 5.9E-23 1.3E-27 204.8 16.5 154 1-158 691-857 (1205)
35 COG0525 ValS Valyl-tRNA synthe 99.9 1.1E-22 2.4E-27 193.9 16.5 152 1-158 496-652 (877)
36 TIGR00392 ileS isoleucyl-tRNA 99.9 1.3E-22 2.8E-27 199.6 16.2 153 3-158 584-742 (861)
37 PRK06039 ileS isoleucyl-tRNA s 99.9 3.3E-22 7.2E-27 198.2 18.0 153 1-158 563-723 (975)
38 PLN02959 aminoacyl-tRNA ligase 99.9 3.9E-21 8.4E-26 191.5 16.3 141 1-149 689-831 (1084)
39 PRK00390 leuS leucyl-tRNA synt 99.9 4E-21 8.7E-26 187.1 16.0 132 9-156 555-687 (805)
40 PLN02381 valyl-tRNA synthetase 99.9 6.2E-21 1.3E-25 189.7 14.4 153 1-158 626-821 (1066)
41 PTZ00419 valyl-tRNA synthetase 99.8 9.4E-21 2E-25 188.5 14.9 153 1-158 556-756 (995)
42 cd00672 CysRS_core catalytic c 99.8 1E-21 2.3E-26 162.9 4.9 68 1-69 146-213 (213)
43 TIGR00396 leuS_bact leucyl-tRN 99.8 7.1E-20 1.5E-24 178.9 16.1 142 8-156 551-726 (842)
44 COG0495 LeuS Leucyl-tRNA synth 99.8 7.8E-19 1.7E-23 167.9 15.3 160 7-179 550-719 (814)
45 PLN02563 aminoacyl-tRNA ligase 99.8 1.8E-18 3.9E-23 170.0 14.4 119 30-154 723-842 (963)
46 TIGR00456 argS arginyl-tRNA sy 99.8 8.3E-18 1.8E-22 158.6 15.6 172 12-184 354-563 (566)
47 KOG0433|consensus 99.8 6.7E-18 1.5E-22 156.1 13.0 151 5-158 588-747 (937)
48 cd07963 Anticodon_Ia_Cys Antic 99.7 1.7E-17 3.7E-22 131.7 10.7 118 122-255 32-149 (156)
49 KOG0432|consensus 99.7 9.1E-17 2E-21 151.2 15.0 151 3-158 566-760 (995)
50 PRK01611 argS arginyl-tRNA syn 99.7 9.9E-17 2.1E-21 149.6 13.4 168 15-184 304-504 (507)
51 PF09334 tRNA-synt_1g: tRNA sy 99.7 2.6E-17 5.7E-22 148.4 3.9 69 11-79 308-377 (391)
52 cd00668 Ile_Leu_Val_MetRS_core 99.7 3.6E-17 7.9E-22 143.8 4.5 67 1-68 244-312 (312)
53 cd00818 IleRS_core catalytic c 99.6 8.4E-16 1.8E-20 136.5 4.7 66 3-68 272-338 (338)
54 KOG0434|consensus 99.6 1.2E-14 2.6E-19 134.0 11.8 150 5-158 576-736 (1070)
55 PF00133 tRNA-synt_1: tRNA syn 99.6 1.2E-15 2.6E-20 144.9 3.4 67 2-69 533-601 (601)
56 cd00817 ValRS_core catalytic c 99.6 2.3E-15 4.9E-20 135.8 4.2 67 1-68 314-382 (382)
57 cd00814 MetRS_core catalytic c 99.5 5.1E-15 1.1E-19 130.6 5.7 57 12-68 262-319 (319)
58 PRK12451 arginyl-tRNA syntheta 99.5 9.3E-14 2E-18 130.9 13.5 168 14-183 353-558 (562)
59 cd00812 LeuRS_core catalytic c 99.5 4.4E-15 9.6E-20 130.7 3.5 57 13-70 258-314 (314)
60 TIGR00467 lysS_arch lysyl-tRNA 99.5 4E-14 8.7E-19 131.1 7.9 70 14-87 261-330 (515)
61 KOG0435|consensus 99.5 9.3E-13 2E-17 121.5 13.9 127 26-155 613-742 (876)
62 KOG1247|consensus 99.4 1.6E-12 3.5E-17 114.0 10.1 143 11-158 324-471 (567)
63 PRK00750 lysK lysyl-tRNA synth 99.4 1.1E-12 2.5E-17 122.0 7.8 70 5-78 256-327 (510)
64 cd00674 LysRS_core_class_I cat 99.4 1.5E-12 3.2E-17 115.5 8.0 66 9-76 255-322 (353)
65 KOG0437|consensus 99.4 5E-12 1.1E-16 117.7 11.5 135 6-150 686-824 (1080)
66 PLN02286 arginine-tRNA ligase 99.4 2.3E-11 5E-16 115.0 15.6 164 20-184 367-573 (576)
67 COG0018 ArgS Arginyl-tRNA synt 99.3 4.4E-11 9.5E-16 112.2 16.0 171 13-184 362-574 (577)
68 PF09190 DALR_2: DALR domain; 99.0 1.8E-09 3.8E-14 72.3 5.7 58 127-185 1-58 (63)
69 PF01921 tRNA-synt_1f: tRNA sy 98.9 3.2E-09 6.8E-14 93.7 5.7 69 7-77 260-330 (360)
70 smart00840 DALR_2 This DALR do 98.7 4.4E-08 9.5E-13 63.8 5.9 54 128-181 2-55 (56)
71 COG1384 LysS Lysyl-tRNA synthe 98.7 1.6E-08 3.4E-13 92.0 4.6 70 7-78 255-326 (521)
72 cd07956 Anticodon_Ia_Arg Antic 98.5 3.6E-06 7.8E-11 66.6 13.7 136 47-183 2-152 (156)
73 cd07958 Anticodon_Ia_Leu_BEm A 98.2 3.2E-05 6.9E-10 57.5 12.1 83 68-158 1-83 (117)
74 cd07957 Anticodon_Ia_Met Antic 98.1 5.1E-05 1.1E-09 57.4 10.7 73 110-183 34-114 (129)
75 cd07959 Anticodon_Ia_Leu_AEc A 98.0 0.00019 4.2E-09 53.4 12.3 48 110-158 33-81 (117)
76 PRK04156 gltX glutamyl-tRNA sy 98.0 1.3E-05 2.8E-10 75.3 5.9 66 12-78 321-403 (567)
77 cd07962 Anticodon_Ia_Val Antic 97.9 0.00042 9E-09 53.3 12.6 112 68-184 1-121 (135)
78 cd07955 Anticodon_Ia_Cys_like 97.8 9.7E-05 2.1E-09 51.8 7.4 53 123-181 28-81 (81)
79 PF00750 tRNA-synt_1d: tRNA sy 97.8 1.4E-05 3E-10 71.7 2.6 58 13-70 267-354 (354)
80 cd07375 Anticodon_Ia_like Anti 97.7 0.0011 2.5E-08 48.7 11.7 47 111-158 38-84 (117)
81 cd07960 Anticodon_Ia_Ile_BEm A 97.6 0.0022 4.8E-08 51.8 12.5 48 110-158 42-91 (180)
82 cd07961 Anticodon_Ia_Ile_ABEc 97.2 0.014 3E-07 47.2 12.9 87 68-158 1-93 (183)
83 PF05746 DALR_1: DALR anticodo 96.9 0.015 3.3E-07 43.3 9.7 97 86-183 4-115 (119)
84 KOG1195|consensus 96.7 0.031 6.7E-07 51.5 11.6 169 12-183 351-563 (567)
85 PF08264 Anticodon_1: Anticodo 96.5 0.016 3.6E-07 45.0 8.2 44 114-158 1-46 (153)
86 cd00418 GlxRS_core catalytic c 96.5 0.0094 2E-07 50.1 6.9 50 13-64 136-187 (230)
87 cd00808 GluRS_core catalytic c 96.5 0.0063 1.4E-07 51.5 5.8 50 12-63 144-195 (239)
88 TIGR00464 gltX_bact glutamyl-t 95.4 0.028 6.1E-07 52.3 5.4 44 13-58 224-269 (470)
89 cd09287 GluRS_non_core catalyt 95.3 0.04 8.7E-07 46.6 5.6 64 13-77 150-230 (240)
90 cd00805 TyrRS_core catalytic c 95.1 0.023 5E-07 49.0 3.8 39 18-59 182-221 (269)
91 KOG4426|consensus 95.0 0.62 1.3E-05 42.5 12.4 167 15-182 429-651 (656)
92 smart00836 DALR_1 DALR anticod 94.9 0.36 7.7E-06 36.0 9.3 72 111-183 35-118 (122)
93 cd00395 Tyr_Trp_RS_core cataly 94.7 0.035 7.5E-07 48.0 3.8 43 15-59 183-225 (273)
94 PRK01406 gltX glutamyl-tRNA sy 94.7 0.052 1.1E-06 50.7 5.1 42 17-59 237-280 (476)
95 cd00807 GlnRS_core catalytic c 94.5 0.1 2.2E-06 44.1 5.9 63 13-76 148-227 (238)
96 PLN03233 putative glutamate-tR 94.4 0.1 2.2E-06 49.0 6.3 65 13-78 230-311 (523)
97 PRK12556 tryptophanyl-tRNA syn 94.4 0.016 3.4E-07 51.5 0.8 23 20-42 191-214 (332)
98 TIGR00440 glnS glutaminyl-tRNA 94.1 0.11 2.4E-06 48.8 5.9 62 15-77 227-305 (522)
99 PRK12283 tryptophanyl-tRNA syn 93.8 0.026 5.6E-07 51.1 1.1 31 24-59 258-288 (398)
100 PRK12282 tryptophanyl-tRNA syn 93.7 0.58 1.3E-05 41.7 9.4 19 25-43 190-209 (333)
101 TIGR00233 trpS tryptophanyl-tR 93.4 0.38 8.2E-06 42.7 7.8 28 26-58 188-216 (328)
102 PRK12284 tryptophanyl-tRNA syn 93.0 0.029 6.3E-07 51.2 0.2 27 25-56 197-223 (431)
103 PRK05347 glutaminyl-tRNA synth 92.6 0.28 6.2E-06 46.3 6.0 60 18-77 258-334 (554)
104 PRK13354 tyrosyl-tRNA syntheta 92.5 0.049 1.1E-06 49.8 0.9 34 24-59 224-257 (410)
105 PF00579 tRNA-synt_1b: tRNA sy 92.1 0.06 1.3E-06 46.9 0.9 27 17-43 183-212 (292)
106 COG0180 TrpS Tryptophanyl-tRNA 92.0 0.053 1.1E-06 47.6 0.5 30 13-42 178-211 (314)
107 PRK05912 tyrosyl-tRNA syntheta 91.9 0.083 1.8E-06 48.3 1.6 34 25-60 227-260 (408)
108 PLN02859 glutamine-tRNA ligase 91.9 0.28 6.1E-06 48.1 5.2 60 17-76 486-563 (788)
109 PTZ00402 glutamyl-tRNA synthet 91.7 0.41 8.8E-06 45.7 6.0 64 13-77 272-352 (601)
110 PRK14895 gltX glutamyl-tRNA sy 91.5 0.49 1.1E-05 44.5 6.2 63 9-74 220-286 (513)
111 PRK12410 glutamylglutaminyl-tR 91.4 0.53 1.2E-05 43.3 6.3 45 17-62 221-267 (433)
112 cd00806 TrpRS_core catalytic c 91.4 0.091 2E-06 45.6 1.2 30 14-43 171-205 (280)
113 PRK12285 tryptophanyl-tRNA syn 91.1 0.084 1.8E-06 47.6 0.7 40 13-58 234-275 (368)
114 PRK14703 glutaminyl-tRNA synth 90.7 0.69 1.5E-05 45.6 6.6 62 17-78 260-338 (771)
115 PRK12558 glutamyl-tRNA synthet 90.5 0.55 1.2E-05 43.4 5.5 62 12-75 222-287 (445)
116 PLN02907 glutamate-tRNA ligase 90.4 0.7 1.5E-05 45.4 6.4 65 12-77 431-512 (722)
117 PRK00927 tryptophanyl-tRNA syn 86.7 0.25 5.4E-06 44.0 0.6 30 24-58 185-219 (333)
118 PTZ00437 glutaminyl-tRNA synth 86.3 1.2 2.5E-05 42.4 4.8 61 18-78 274-351 (574)
119 PTZ00126 tyrosyl-tRNA syntheta 86.2 0.44 9.5E-06 43.3 1.9 38 17-59 241-282 (383)
120 PLN02627 glutamyl-tRNA synthet 85.8 1.9 4.1E-05 40.8 5.9 49 13-63 276-326 (535)
121 PLN02486 aminoacyl-tRNA ligase 84.7 0.46 1E-05 43.1 1.3 38 17-59 249-290 (383)
122 PRK08560 tyrosyl-tRNA syntheta 84.4 0.42 9.1E-06 42.5 0.9 25 19-43 200-228 (329)
123 COG0162 TyrS Tyrosyl-tRNA synt 84.0 1.1 2.4E-05 40.8 3.4 23 15-37 208-231 (401)
124 COG0008 GlnS Glutamyl- and glu 81.3 2 4.3E-05 40.1 4.1 48 9-59 230-279 (472)
125 TIGR00234 tyrS tyrosyl-tRNA sy 80.3 0.63 1.4E-05 42.2 0.5 19 25-43 216-234 (377)
126 PRK05710 glutamyl-Q tRNA(Asp) 78.4 3 6.5E-05 36.6 4.0 47 12-63 218-265 (299)
127 KOG2007|consensus 72.7 2.3 5E-05 39.6 1.9 35 217-255 531-565 (586)
128 TIGR00463 gltX_arch glutamyl-t 72.1 7.1 0.00015 37.3 5.0 64 13-77 312-393 (560)
129 PTZ00348 tyrosyl-tRNA syntheta 67.8 2.5 5.5E-05 41.2 1.1 23 161-183 428-450 (682)
130 PF00749 tRNA-synt_1c: tRNA sy 67.1 8.4 0.00018 34.0 4.2 49 13-62 226-277 (314)
131 KOG1907|consensus 60.3 3.4 7.4E-05 41.1 0.5 30 1-35 224-253 (1320)
132 PLN02886 aminoacyl-tRNA ligase 59.8 4.3 9.4E-05 36.9 1.0 17 27-43 247-267 (389)
133 COG3110 Uncharacterized protei 59.5 5 0.00011 32.8 1.2 18 22-39 30-47 (216)
134 TIGR03838 queuosine_YadB gluta 56.1 4.6 9.9E-05 34.9 0.5 24 13-37 212-236 (272)
135 COG0751 GlyS Glycyl-tRNA synth 50.4 2.6E+02 0.0057 27.6 11.7 47 111-158 609-655 (691)
136 TIGR00211 glyS glycyl-tRNA syn 41.9 3.6E+02 0.0078 26.8 13.0 47 111-158 610-656 (691)
137 PRK01233 glyS glycyl-tRNA synt 41.6 3.6E+02 0.0079 26.7 11.7 47 111-158 600-646 (682)
138 KOG2713|consensus 36.5 14 0.0003 32.1 0.5 42 28-76 209-257 (347)
139 PF07484 Collar: Phage Tail Co 32.0 18 0.0004 23.2 0.4 22 14-35 6-27 (57)
140 COG0522 RpsD Ribosomal protein 31.2 14 0.00031 30.5 -0.3 18 14-31 111-128 (205)
141 PTZ00478 Sec superfamily; Prov 28.7 1.5E+02 0.0033 20.6 4.4 44 138-181 16-61 (81)
142 KOG2144|consensus 22.1 36 0.00079 29.7 0.5 11 27-37 219-229 (360)
143 PF09712 PHA_synth_III_E: Poly 21.2 5.6E+02 0.012 22.4 9.6 18 208-225 276-293 (293)
144 PF01479 S4: S4 domain; Inter 20.4 14 0.00031 22.3 -1.7 23 13-35 17-39 (48)
145 PF14723 SSFA2_C: Sperm-specif 20.1 1.5E+02 0.0032 23.8 3.5 29 209-241 146-174 (179)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-50 Score=356.27 Aligned_cols=215 Identities=28% Similarity=0.362 Sum_probs=163.9
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~ 81 (255)
||||+|++|..||+|||||+|||+++|+|||||||||+|++|++++|+|+++|||||++|||+|++||++.|++|.+..+
T Consensus 240 iAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~ 319 (464)
T COG0215 240 IAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALE 319 (464)
T ss_pred HHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHH
Confidence 79999999988999999999999999999999999999999999999999999999999999999999999999987555
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCC
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPN 161 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~ 161 (255)
++.+++.++.... ... .. . ...++...|.++|+||||||.|++.|+++++.+|...+....
T Consensus 320 rl~~~~~~~~~~~---~~~--------~~--~------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~ 380 (464)
T COG0215 320 RLYNALRRLRDLA---GDA--------EL--A------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS 380 (464)
T ss_pred HHHHHHHHHHhhc---ccc--------cc--c------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcccc
Confidence 5555544433111 000 00 0 234556779999999999999999999999999887664211
Q ss_pred HHHHHHHHHHHHHhhhcccc--ccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHh
Q psy11866 162 QLLLRDIGAYVTKILTVFGC--IGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239 (255)
Q Consensus 162 ~~~l~~~~~~~~~~~~ilGi--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~i 239 (255)
....++..+..++.+||+ +...+..+. . .++.....|+.|+ +.|.+||+.|+ |++||+|
T Consensus 381 --~~~~~~~~~~~~~~~lg~~~l~~~~~~~~-------~---~~~~~~~~i~~Li----~~R~~aR~~K~---~~~AD~i 441 (464)
T COG0215 381 --DAKAVLSALKALLAILGLKVLGLFPQSGA-------Q---EDESDDEEIEALI----EERLEARKAKN---WALADEI 441 (464)
T ss_pred --chHHHHHHHHHHHHHhCchhhcccccccc-------c---cccchHHHHHHHH----HHHHHHHHhhC---HHHHHHH
Confidence 123444455556666663 111111100 0 0111334677777 68999999999 8999999
Q ss_pred hhcCCCCCCceeccCC
Q psy11866 240 RDEVLPNVGVRLEDIE 255 (255)
Q Consensus 240 R~~~L~~~Gi~l~D~~ 255 (255)
|++ |.++||.|+|+|
T Consensus 442 Rd~-L~~~Gi~leD~~ 456 (464)
T COG0215 442 RDE-LLALGIILEDTP 456 (464)
T ss_pred HHH-HHHCCcEEEECC
Confidence 999 799999999986
No 2
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.1e-47 Score=362.36 Aligned_cols=243 Identities=48% Similarity=0.786 Sum_probs=195.2
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~ 81 (255)
||||+|++|+.||+++|+|+|||+++|+|||||+||||+|+|+|++||+|++|||||+++|++|++||++.+.++.+..+
T Consensus 287 iAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~ 366 (651)
T PTZ00399 287 LAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDK 366 (651)
T ss_pred HHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHH
Confidence 79999999988999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc--C
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG--T 159 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~--~ 159 (255)
.+.+++.++...+..... +....+.+.+.++...+..+.+.|.++|+|+|+|+.|++.|++|++.+|.|++. .
T Consensus 367 ~l~n~~~rl~s~l~~~~~-----~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~~~~~ 441 (651)
T PTZ00399 367 VFFNFFANVKIKLRESEL-----TSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLNSGEQ 441 (651)
T ss_pred HHHHHHHHHHHHHhhccc-----cccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776554432110 011123456778888899999999999989999999999999999999999973 2
Q ss_pred CCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhc--------CchH
Q psy11866 160 PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLI--------KSTE 231 (255)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~--------k~~~ 231 (255)
+....+..+..++..++.+|||.......++... ...+..+.++|+.|+++|..+|..|++. +...
T Consensus 442 ~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~------~~~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~ 515 (651)
T PTZ00399 442 PSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQ------NSTSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQ 515 (651)
T ss_pred chHHHHHHHHHHHHHHHhcccCCcchhhcccccc------ccchhhhHHHHHHHHHHHHHHHHHHHhccccccchhhhhh
Confidence 3344567788999999999999643322222211 0112234578999999999999988885 2223
Q ss_pred HHHHhhHhhhcCCCCCCceeccCC
Q psy11866 232 ILNQCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 232 ~~~~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
+|++||+|||+.|.++||.|+|++
T Consensus 516 ~~~~~D~iRd~~L~~~Gi~l~D~~ 539 (651)
T PTZ00399 516 LLQLCDKLRDEWLPNLGIRIEDKP 539 (651)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcC
Confidence 499999999932699999999985
No 3
>KOG2007|consensus
Probab=100.00 E-value=7.4e-48 Score=339.99 Aligned_cols=236 Identities=53% Similarity=0.837 Sum_probs=208.5
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~ 81 (255)
||||||+|...+|+|||+|+|||+++|+||||||+||||++++|++|+|+++|++||+++|++++|||++.|..|.+.++
T Consensus 277 iAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~ 356 (586)
T KOG2007|consen 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEK 356 (586)
T ss_pred HHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHH
Confidence 79999999988899999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc---
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG--- 158 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~--- 158 (255)
.+++|+..++.+.+... ++..+.+.+..+.+.+......|+.+++|+|+||.++..+.+++..+|.|+..
T Consensus 357 ~~~~ff~~~~al~~~~~-------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~~ 429 (586)
T KOG2007|consen 357 SLNNFFLDVKALLRGAK-------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESGE 429 (586)
T ss_pred HHHHHHHHHHHHHhccc-------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhcc
Confidence 99999988887765421 13456667888999999999999999999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhH
Q psy11866 159 TPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDR 238 (255)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~ 238 (255)
.+....+..+..++.+++.+||+.... + .+...+....|+++.|++||..+|+.|++.+-++++++||.
T Consensus 430 ~~~~~~L~~I~~yIt~~l~ifG~~e~~---g--------~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~d~ 498 (586)
T KOG2007|consen 430 RPNSALLKAIASYITKLLKIFGLSEGK---G--------QQYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELCDT 498 (586)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCccc---c--------cccccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHhHH
Confidence 356788999999999999999986421 0 00001223558999999999999999999988899999999
Q ss_pred hhhcCCCCCCceeccCC
Q psy11866 239 LRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 239 iR~~~L~~~Gi~l~D~~ 255 (255)
+|+.+|.++|+.|+|.+
T Consensus 499 lR~~~l~~~g~~led~~ 515 (586)
T KOG2007|consen 499 LRDSDLLELGVRLEDRK 515 (586)
T ss_pred HHHhhHHHhhhHHHhCC
Confidence 99998999999999964
No 4
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=8.1e-45 Score=333.50 Aligned_cols=218 Identities=27% Similarity=0.371 Sum_probs=173.8
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
+||||+|++| .||+++|+|+|||+++|+|||||+||+|+|.|++++||||++|||++++||+++++|+++.+.++.+.
T Consensus 238 eiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~- 315 (463)
T PRK00260 238 EIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKA- 315 (463)
T ss_pred HHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHH-
Confidence 5899999999 79999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP 160 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~ 160 (255)
++++++.+..+.. . ..+.++...+..+.+.|.++|+||||||.|++.|+++++.+|.|++..
T Consensus 316 --~~rl~~~~~~~~~----~-----------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~- 377 (463)
T PRK00260 316 --LERLYNALAETAL----G-----------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETK- 377 (463)
T ss_pred --HHHHHHHHHHhhh----c-----------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcc-
Confidence 4444443333211 0 023445566778889999999889999999999999999999998763
Q ss_pred CHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHhh
Q psy11866 161 NQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR 240 (255)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR 240 (255)
+...+..+...+..++.+|||......... . .. .....+.++.|+ +.|++||++|| |++||+||
T Consensus 378 ~~~~~~~~~~~~~~~~~ilG~~~~~~~~~~-~-----~~---~~~~~~~~~~li----~~R~~aR~~Kd---f~~AD~IR 441 (463)
T PRK00260 378 DKEAAAALAALLRALADVLGLEQDEEALFE-A-----AA---DELLDAEIEALI----EERQEARKAKD---FALADAIR 441 (463)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchhhhhhh-c-----cc---ccccHHHHHHHH----HHHHHHHHccC---HHHHHHHH
Confidence 344567778888889999999432110000 0 00 011223466777 68999999999 89999999
Q ss_pred hcCCCCCCceeccCC
Q psy11866 241 DEVLPNVGVRLEDIE 255 (255)
Q Consensus 241 ~~~L~~~Gi~l~D~~ 255 (255)
++ |.++||.|+|+|
T Consensus 442 d~-L~~~Gi~v~D~~ 455 (463)
T PRK00260 442 DE-LAALGIVLEDTP 455 (463)
T ss_pred HH-HHHCCcEEEEcC
Confidence 99 799999999986
No 5
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.5e-44 Score=332.86 Aligned_cols=235 Identities=22% Similarity=0.287 Sum_probs=170.9
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~ 81 (255)
||||+|++| .+|+|||||+|||+++|+|||||+|||++++|++++|++|++|||+|++||++|++||++.|.++.+...
T Consensus 296 iAQsea~~g-~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~ 374 (557)
T PLN02946 296 IAQSCAACC-DSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIF 374 (557)
T ss_pred HHHHHHHhC-CCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHH
Confidence 799999998 5899999999999999999999999999999999999999999999999999999999999999875444
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCC-
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP- 160 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~- 160 (255)
.+.+++.++...+...... ..... ....+...+..+.+.|.+||+||||||.|++.|+++++.+|.+++...
T Consensus 375 ~l~~~~~~~~~~l~~~~~~------~~~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~~~ 447 (557)
T PLN02946 375 YIYQTLHDCEESLQQHDST------FEKDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKG 447 (557)
T ss_pred HHHHHHHHHHHHhhhhccc------ccccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhccc
Confidence 5555555554333211100 00000 011122345567789999999999999999999999999999986421
Q ss_pred --C---HHHHHHHHHHHHHhhhccccccCCccccccC-CCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q psy11866 161 --N---QLLLRDIGAYVTKILTVFGCIGDVKNIGFPL-GGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILN 234 (255)
Q Consensus 161 --~---~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~ 234 (255)
. ...+..+...+..++.+|||........+.. ........... ...|+.|+ +.|++||++|| |+
T Consensus 448 ~~~~~~~~~l~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~li----~~R~~aR~~Kd---f~ 517 (557)
T PLN02946 448 KKQEKRLESLAALEKKIRDVLSVLGLMPTSYSEALQQLREKALRRAKLT---EEQVLQKI----EERTVARKNKE---YE 517 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCchhhhhhhhhhhhhhhhcccCC---HHHHHHHH----HHHHHHHhccC---HH
Confidence 1 1234556667788889999953210000000 00000000010 12366666 68999999999 89
Q ss_pred HhhHhhhcCCCCCCceeccCC
Q psy11866 235 QCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 235 ~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
+||+||++ |.++||.|+|+|
T Consensus 518 ~AD~IR~~-L~~~Gi~l~Dt~ 537 (557)
T PLN02946 518 KSDAIRKD-LAAVGIALMDSP 537 (557)
T ss_pred HHHHHHHH-HHHCCCEEEECC
Confidence 99999999 699999999986
No 6
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.3e-44 Score=330.41 Aligned_cols=212 Identities=25% Similarity=0.309 Sum_probs=160.8
Q ss_pred ccccccccCCC---------------cccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCc
Q psy11866 2 SFRFQAYFNND---------------SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTL 66 (255)
Q Consensus 2 ~AQs~a~~~~~---------------~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~ 66 (255)
||||+|++|+. ||+|||||+|||+++|+|||||+|||++|++++++|+||++|||++++||++|+
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL 544 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPL 544 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCC
Confidence 79999998862 699999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy11866 67 DYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR 146 (255)
Q Consensus 67 ~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~ 146 (255)
+||++.|.++.+ .++++++.+.+... . .. . ....+..+.+.|.+||+||||||.|++.|+
T Consensus 545 ~fS~e~Le~Ak~---~l~Rl~~~l~~~~~----~-~~-----~-------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~ 604 (699)
T PRK14535 545 NYSDAHLDDAKG---ALTRLYTTLKNTPA----A-EF-----M-------LSENVNDYTRRFYAAMNDDFGTVEAVAVLF 604 (699)
T ss_pred CcCHHHHHHHHH---HHHHHHHHHHhhhh----c-cc-----h-------hhhhHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 999999999874 44445444433210 0 00 0 011344567889999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHh
Q psy11866 147 DCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARL 226 (255)
Q Consensus 147 ~l~~~~N~~~~~~~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~ 226 (255)
++++.+|.... ..+...+..+..+|||+...+...+.... ...+.. ...|+.|+ +.|++||+
T Consensus 605 ~lvk~iN~~~~--------~~~~~~l~~~~~vLGl~~~~~~~~~~~~~---~~~~~~---~~~i~~Li----~~R~~AR~ 666 (699)
T PRK14535 605 ELAGEVNKTND--------AQLAGCLKALGGIIGLLQRDPTEFLQGGA---ASDGLS---NEEIEDLI----ARRKQARA 666 (699)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHhhcCCCccchhhhhhccc---ccccCC---HHHHHHHH----HHHHHHHH
Confidence 99999998631 22334455678899995322111111000 000111 12366777 68999999
Q ss_pred cCchHHHHHhhHhhhcCCCCCCceeccCC
Q psy11866 227 IKSTEILNQCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 227 ~k~~~~~~~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
+|| |++||+||++ |.++||.|+|+|
T Consensus 667 ~Kd---fa~AD~IRd~-L~~~GI~veDt~ 691 (699)
T PRK14535 667 DKN---WAESDRIRDL-LNEHKIILEDNA 691 (699)
T ss_pred hCC---HHHHHHHHHH-HHHCCCEEEEcC
Confidence 999 8999999999 699999999986
No 7
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=3.8e-42 Score=315.35 Aligned_cols=221 Identities=22% Similarity=0.285 Sum_probs=163.6
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
++|||+|++| .||+++|+|+|||+++|+|||||+||+|+|.|++++|+||++|||++++||+++++||++.|.++.+..
T Consensus 237 e~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~ 315 (465)
T TIGR00435 237 EIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNAL 315 (465)
T ss_pred HHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHH
Confidence 3799999998 689999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-hhhhcC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN-IYLRGT 159 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N-~~~~~~ 159 (255)
.++.+++..+..... .. .. ..... ......+.+.|.+||+||||||.|++.|+++++.+| ..++
T Consensus 316 ~rl~~~~~~~~~~~~---~~-~~--~~~~~-------~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~-- 380 (465)
T TIGR00435 316 ERLYKALRVLDTTLA---YS-GN--QSLNK-------FPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVS-- 380 (465)
T ss_pred HHHHHHHHHHHhhhc---cc-cc--ccccc-------chhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcc--
Confidence 444443333321111 00 00 00000 012234567899999999999999999999999999 4442
Q ss_pred CCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHh
Q psy11866 160 PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRL 239 (255)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~i 239 (255)
...+..+...+..+..+||+.........+.. .. +..+ ..|+.|+ +.|++||++|| |++||+|
T Consensus 381 --~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~----~~---~~~~-~~i~~l~----~~R~~ar~~k~---~~~aD~i 443 (465)
T TIGR00435 381 --KADAALLIEHLIFLESRLGLLLGLPSKPVQAG----SN---DDEL-GEIEALI----EERSIARKEKD---FAKADEI 443 (465)
T ss_pred --hHHHHHHHHHHHHHHHhcccCccccchhcccc----cc---cccH-HHHHHHH----HHHHHHHHhCC---HHHHHHH
Confidence 12245566778888899998532110000000 00 0001 2366676 68999999999 8999999
Q ss_pred hhcCCCCCCceeccCC
Q psy11866 240 RDEVLPNVGVRLEDIE 255 (255)
Q Consensus 240 R~~~L~~~Gi~l~D~~ 255 (255)
|++ |.++||.|+|+|
T Consensus 444 R~~-L~~~Gi~~~D~~ 458 (465)
T TIGR00435 444 RDE-LLKKGIVLEDTP 458 (465)
T ss_pred HHH-HHHCCCEEEECC
Confidence 999 699999999986
No 8
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-42 Score=313.60 Aligned_cols=228 Identities=21% Similarity=0.216 Sum_probs=163.4
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
||||+|++| .||+++|||+|||+++|+|||||+||+|+++|++++ |+++++|||++++||++|++||++.|.++.+..
T Consensus 252 iAqs~a~~g-~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~ 330 (490)
T PRK14536 252 IAQCEAATG-KPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAAR 330 (490)
T ss_pred HHHHHHhcC-CCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 799999998 599999999999999999999999999999999998 999999999999999999999999999998755
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCH-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQ-ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT 159 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~ 159 (255)
.++.+++..+.......... ........... ........+..+.+.|.+||+||||||.|++.|+++++.+|..
T Consensus 331 ~rl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~~---- 405 (490)
T PRK14536 331 RSLVRRVARVVDAARATTGS-VRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSVP---- 405 (490)
T ss_pred HHHHHHHHHHHHhhhccccc-ccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhh----
Confidence 55555544443211110000 00000000000 0001112345667899999999999999999999999998862
Q ss_pred CCHHHHHHHHHHHHHhhhcccccc-CCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhH
Q psy11866 160 PNQLLLRDIGAYVTKILTVFGCIG-DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDR 238 (255)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~ilGi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~ 238 (255)
. ..+...+..+..+|||.. +.+...+.... ... . ....|+.|+ +.|++||++|| |++||+
T Consensus 406 --~---~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~---~~~-~---~~~~i~~li----~~R~~aR~~kd---f~~AD~ 466 (490)
T PRK14536 406 --P---SLCLSVLQAMDTVLGLGLIQEATASLSAQV---PAG-P---SEEEIGQLI----EARAHARQTKD---FPLADE 466 (490)
T ss_pred --H---HHHHHHHHHHHhhcCcccccchhhhhhhcc---ccc-C---CHHHHHHHH----HHHHHHHHhCC---HHHHHH
Confidence 1 235556777889999952 11100000000 000 0 012366676 68999999999 899999
Q ss_pred hhhcCCCCCCceeccCC
Q psy11866 239 LRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 239 iR~~~L~~~Gi~l~D~~ 255 (255)
||++ |.++||.|+|||
T Consensus 467 iR~~-L~~~Gi~l~Dt~ 482 (490)
T PRK14536 467 IRDK-LKAEGIELEDTH 482 (490)
T ss_pred HHHH-HHHCCCEEEEcC
Confidence 9999 699999999996
No 9
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-40 Score=302.96 Aligned_cols=221 Identities=18% Similarity=0.238 Sum_probs=154.8
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
+|||+|++| .||+++|||+|||+++|+|||||+||+++++|++++ |+++++|||++++||++|++||++.|.++.+..
T Consensus 252 ~Aqs~a~~g-~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~ 330 (481)
T PRK14534 252 IAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIAR 330 (481)
T ss_pred HHHHhhhcC-CCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 699999997 589999999999999999999999999999999996 999999999999999999999999999997533
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP 160 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~ 160 (255)
.++++.+..+....... .. +...... +.........+.+.|.+||+||||||.|++.|+++++.+|... .
T Consensus 331 ---~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~~-~-- 400 (481)
T PRK14534 331 ---ENMLNKLTYFYSSLDQF-DL-NLLNKDL--ENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLSF-L-- 400 (481)
T ss_pred ---HHHHHHHHHHHHhhhhc-cc-ccccccc--ccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh-h--
Confidence 33333343322111000 00 0000000 0000011234567899999999999999999999999999751 0
Q ss_pred CHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHhh
Q psy11866 161 NQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR 240 (255)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR 240 (255)
.. . .+...+..++. ||+.... .. .... .. ..+...|+.|+ +.|++||++|| |++||+||
T Consensus 401 ~~--~-~~~~~~~~~~~-lg~~~~~--~~-~~~~---~~----~~~~~~i~~li----~~R~~aR~~Kd---~~~AD~iR 459 (481)
T PRK14534 401 SK--L-RLAFKFDEVLS-LGLREEI--LR-EIEN---HR----IVIDDNMKSLI----EERRLAKCEKD---FKRADEIR 459 (481)
T ss_pred hH--H-HHHHHHHHHHh-CCCCccc--ch-hhcc---cc----ccCHHHHHHHH----HHHHHHHHhCC---hHHHHHHH
Confidence 11 1 12333445555 7773110 00 0000 00 00112366777 68999999999 89999999
Q ss_pred hcCCCCCCceeccCC
Q psy11866 241 DEVLPNVGVRLEDIE 255 (255)
Q Consensus 241 ~~~L~~~Gi~l~D~~ 255 (255)
++ |.++||.|+|||
T Consensus 460 ~~-L~~~Gi~l~Dt~ 473 (481)
T PRK14534 460 EY-FASKGFVLIDTE 473 (481)
T ss_pred HH-HHHCCCEEEEcC
Confidence 99 699999999986
No 10
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.7e-32 Score=241.83 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=111.8
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~ 79 (255)
+||||+|++|+.||+++|||+|+|+++|+|||||+||||+|.++++. |+|+++|||++++||++|++||++.|.++.+
T Consensus 232 eiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~- 310 (384)
T PRK12418 232 SAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEA- 310 (384)
T ss_pred HHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHH-
Confidence 58999999997799999999999999999999999999999999874 8888999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.++.+.+... . . . .+.++.+.|.++|+||||||.|++.|+++++.+|.|...
T Consensus 311 --~l~r~~~~~~~~----~-~------------~------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~ 364 (384)
T PRK12418 311 --RLARWRAAAALP----A-G------------P------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGD 364 (384)
T ss_pred --HHHHHHHHHhcc----c-c------------c------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCC
Confidence 444444433211 0 0 0 123346789999999999999999999999999999865
No 11
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.97 E-value=1.6e-31 Score=238.80 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=109.1
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~ 79 (255)
+||||+|++|+.||+++|||+|||+++|+|||||+||||+|+++++. |+|+++|||++++||++|++||++.|.++.+
T Consensus 259 eiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~- 337 (411)
T TIGR03447 259 SAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEA- 337 (411)
T ss_pred HHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHH-
Confidence 48999999997799999999999999999999999999999999986 9999999999999999999999999999864
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhh
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 156 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~ 156 (255)
.+.++.+.+... . . . .+..+...|.++|+||||||.|++.|+++++.+|.--
T Consensus 338 --~l~rl~~~~~~~----~-~------------~------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~~~ 389 (411)
T TIGR03447 338 --RLARWRAALAAT----D-A------------P------DATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSG 389 (411)
T ss_pred --HHHHHHHHHhhc----c-c------------c------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcC
Confidence 444444433211 0 0 0 1223456788999999999999999999999988753
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.94 E-value=3e-28 Score=208.06 Aligned_cols=76 Identities=38% Similarity=0.607 Sum_probs=61.4
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVT 78 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~ 78 (255)
||||+|++| .||+++|||+|||+++|+|||||+|||++++|++++|+|+++||+||++|||+|++||++.|++|.|
T Consensus 225 iAqs~a~~g-~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 225 IAQSEAATG-KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp HHHHHHHHS-S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhC-chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 699999999 7999999999999999999999999999999999999999999999999999999999999999864
No 13
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=2.8e-26 Score=214.31 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=133.6
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH-
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY- 79 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~- 79 (255)
.||+.|+ + .++|++|+|||||+.+|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+..+.+.
T Consensus 273 ~a~~~a~-~-~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~ 350 (511)
T PRK11893 273 PAFLMAA-G-LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINAD 350 (511)
T ss_pred HHHHHhC-C-CCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHH
Confidence 4788887 4 4788999999999999999999999999999999999999999999987 7999999999999876652
Q ss_pred -HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 80 -EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 80 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+.++++++..+....... ..+......+.|.+++..+..+.+.+.++| ++|+++.|+..++++++.+|+|++.
T Consensus 351 l~~~l~n~~~r~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~ 427 (511)
T PRK11893 351 LANDLGNLAQRTLSMIAKNFDG--KVPEPGALTEADEALLEAAAALLERVRAAM-DNLAFDKALEAILALVRAANKYIDE 427 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCCCCcccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 234555555554444322111 111111234457788889999999999999 9999999999999999999999976
Q ss_pred -CC------CHHHHHHHHHHHHHhhhccccc
Q psy11866 159 -TP------NQLLLRDIGAYVTKILTVFGCI 182 (255)
Q Consensus 159 -~~------~~~~l~~~~~~~~~~~~ilGi~ 182 (255)
.| +......+...+.++++.+.+.
T Consensus 428 ~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~l 458 (511)
T PRK11893 428 QAPWSLAKTDPERLATVLYTLLEVLRGIAVL 458 (511)
T ss_pred CCChhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2223444555555666555544
No 14
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.94 E-value=3.1e-26 Score=225.84 Aligned_cols=148 Identities=24% Similarity=0.306 Sum_probs=124.1
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~ 80 (255)
++++.|.++..|||+.|+|||||+.+|+|||||+||||+|.+++++||+|++||||++. ++++|++|+++.+.++.+
T Consensus 592 i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~-- 669 (938)
T TIGR00395 592 IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTIL-- 669 (938)
T ss_pred HHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH--
Confidence 56778888888999999999999999999999999999999999999999999999987 799999999999998875
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHHHhhhhhc
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL-DSIRDCISQVNIYLRG 158 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al-~~l~~l~~~~N~~~~~ 158 (255)
.++++++.+..+..... . ..+ ......|+++...+..+.+.+.++| ++|+++.|+ ..+++++..+|+|+..
T Consensus 670 -~l~~l~n~~~~~~~~~~-~--~~~--~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~~~~~~~n~Yl~~ 741 (938)
T TIGR00395 670 -RLERLYEFAEEITKESN-L--ETG--EETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALFDLQADVDWYRRR 741 (938)
T ss_pred -HHHHHHHHHHHHHhhcc-c--CCC--ccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666555433211 0 000 1224468899999999999999999 899999999 7799999999999875
No 15
>KOG0436|consensus
Probab=99.94 E-value=3.3e-26 Score=199.29 Aligned_cols=172 Identities=19% Similarity=0.173 Sum_probs=131.0
Q ss_pred CCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHHHHHHHH--HHHHHHHH
Q psy11866 11 NDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTMEMAVTY--EKLLNEFF 87 (255)
Q Consensus 11 ~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a~~~--~~~l~~~~ 87 (255)
+.|+|+.++.||||+.+|.|||||+||||+|.+++++||+|++|||||... ...|.||+++.+..-.|. .+.+.++.
T Consensus 325 GlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~Ll 404 (578)
T KOG0436|consen 325 GLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLL 404 (578)
T ss_pred CCCCccEEEEeeeeeecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999874 899999999999887753 23333333
Q ss_pred HHHHH--H-HhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-C----
Q psy11866 88 LNVKD--H-IRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-T---- 159 (255)
Q Consensus 88 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-~---- 159 (255)
+++.. + ++.+... .+........+...+...+.++++.+.+.+ |+|.+++|+.++.+.++.+|.|++. .
T Consensus 405 nRc~gkkln~sn~e~~--l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq~~aPWkl 481 (578)
T KOG0436|consen 405 NRCLGKKLNISNCEST--LVVDSPTVAAEGEPLVDTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQQRAPWKL 481 (578)
T ss_pred HHHhhcccChhccccc--cccCCcchhhccchHHHHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhhhcCCcee
Confidence 33321 1 1111100 000000111233456777888999999998 9999999999999999999999987 1
Q ss_pred -----CCHHHHHHHHHHHHHhhhccccccCC
Q psy11866 160 -----PNQLLLRDIGAYVTKILTVFGCIGDV 185 (255)
Q Consensus 160 -----~~~~~l~~~~~~~~~~~~ilGi~~~~ 185 (255)
.+...+..++..+.++++|+||+.+.
T Consensus 482 ~~dsq~~~~~la~~~~~~le~lrv~~illqp 512 (578)
T KOG0436|consen 482 FKDSQVSAEELAKVLHIILEVLRVIGILLQP 512 (578)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23455777888888999999998874
No 16
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3.4e-25 Score=217.66 Aligned_cols=145 Identities=25% Similarity=0.348 Sum_probs=121.0
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~ 80 (255)
+.++.++++..|||+.+++||||+.+|+|||||+||||+|.+++++||+|++|||+++. ++++|.+|+++.+..+.+
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~-- 626 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRR-- 626 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHH--
Confidence 45678889888999999999999999999999999999999999999999999999985 799999999999988764
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHhhhhhc
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR-DCISQVNIYLRG 158 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~-~l~~~~N~~~~~ 158 (255)
.++++++.+..+..... . ......|+++++.++.+.+.+.++| ++|+++.|+..++ .+...+|+|++.
T Consensus 627 -~l~r~~~~~~~~~~~~~---~-----~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~~l~~~~n~Yi~~ 695 (897)
T PRK12300 627 -QLERFYELAKELIEIGG---E-----EELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFYELLNDLRWYLRR 695 (897)
T ss_pred -HHHHHHHHHHHHhcCCC---c-----cccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566655544332110 0 1234568899999999999999999 9999999998875 667889999976
No 17
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-24 Score=201.17 Aligned_cols=170 Identities=20% Similarity=0.168 Sum_probs=137.3
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHH--HHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYE--KLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~--~~l~~~~~ 88 (255)
.|.|+.++.||||+++|+|||||+||+|+|.++++.||+|++||||+.. +..+|.+||++.+.+..|.+ +.+.|+.+
T Consensus 315 ~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~ 394 (558)
T COG0143 315 LPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLAN 394 (558)
T ss_pred CCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999997 78999999999999998843 44555555
Q ss_pred HHHHHHhhccCCCCCcccccc-CCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcC-C------
Q psy11866 89 NVKDHIRNLKFPATTVSSFEK-WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-P------ 160 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~-~------ 160 (255)
++..++.+...+ .+|.... ..+.+.+++..+.++...+.++| +.+.+++|+..+++++..+|+|++.. |
T Consensus 395 R~~~fi~k~~~g--~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~ 471 (558)
T COG0143 395 RTLGFINKYFDG--VVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEEIMALASRANKYIDEQAPWKLAKE 471 (558)
T ss_pred HHHHHHHhccCC--cCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhcc
Confidence 555555555442 3333221 11467788889999999999999 99999999999999999999999872 2
Q ss_pred C-HHHHHHHHHHHHHhhhccccccC
Q psy11866 161 N-QLLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 161 ~-~~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
+ ...+.++.....++++++++...
T Consensus 472 ~~~~~~~~vl~~~~~~~r~la~ll~ 496 (558)
T COG0143 472 DKRERLATVLYLALELVRVLAILLY 496 (558)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 34566677777777888877654
No 18
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=1.4e-24 Score=207.60 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=117.2
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.|+|+.++.||||+.+|+|||||+||+|+|.+++++||+|++|||++.. ++.+|.+||++.+....|. .+.+.|+++
T Consensus 281 ~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~ 360 (648)
T PRK12267 281 LPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLN 360 (648)
T ss_pred CCCCcEEEecceEEECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999999999999999999999999999999999976 6999999999999877663 233445554
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++...+.+... +.++......+.|.++++.+.++.+.+.++| ++|++++|+..++++++.+|+|++.
T Consensus 361 R~~~~~~~~~~--~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~-e~~~~~~al~~i~~~~~~~N~Yi~~ 427 (648)
T PRK12267 361 RTVAMINKYFD--GEIPAPGNVTEFDEELIALAEETLKNYEELM-EELQFSRALEEVWKLISRANKYIDE 427 (648)
T ss_pred HHHHHHHHhcC--CcCCCCCCCchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333222 1222222334568899999999999999999 9999999999999999999999986
No 19
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.92 E-value=2.4e-24 Score=208.24 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=115.3
Q ss_pred cccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhcc-CCCCCcccChhHHHHHHHHH--HHHHHHHH
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYE--KLLNEFFL 88 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~--~~l~~~~~ 88 (255)
|+|+.++.||||+++|+|||||+||+|+|.++++. ||+|++||||++. +..+|.+||++.+....|.+ +.+.|+++
T Consensus 331 ~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~ 410 (801)
T PLN02610 331 TMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFIN 410 (801)
T ss_pred CCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999999999995 9999999999987 68899999999999988752 33344444
Q ss_pred HHHHHHhh----ccCCCCCccccc--cCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRN----LKFPATTVSSFE--KWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++..++.. ... +.+|... .....+.++.+.+.++.+.+.++| +.|+++.|+..++++++.+|+|++.
T Consensus 411 R~~~~i~~~~~k~~~--g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~I~~l~~~~NkYIe~ 483 (801)
T PLN02610 411 RVLSFIAKPPGAGYG--SVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKTAMSISSEGNAYLQE 483 (801)
T ss_pred HHHHHHHhhhhhccC--CcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 44444431 222 2222211 122346789999999999999999 9999999999999999999999987
No 20
>PLN02224 methionine-tRNA ligase
Probab=99.92 E-value=4.5e-24 Score=200.93 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=114.6
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.+||+.+++||||+++|+|||||+||+|+|.+++++||+|++||||++. ++.+|.+|+++.+....|. .+.+.++++
T Consensus 348 ~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~ 427 (616)
T PLN02224 348 LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLN 427 (616)
T ss_pred CCCCcEEEecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999987 6899999999998776653 233344444
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++..++.....+ .++........+.++.+.+..+.+.+.++| +.+++++|+..++++++.+|+|++.
T Consensus 428 R~l~~~~k~~~~--~~~~~~~~~~~d~~l~~~l~~li~~v~~~m-e~~~~~~Al~~i~el~~~~N~Yi~~ 494 (616)
T PLN02224 428 RTLGLLKKNCES--TLVEDSTVAAEGVPLKDTVEKLVEKAQTNY-ENLSLSSACEAVLEIGNAGNTYMDQ 494 (616)
T ss_pred HHHHHHHHhcCC--cCCCccccccccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Confidence 444333332221 111111112345678889999999999999 9999999999999999999999986
No 21
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=2.1e-24 Score=210.72 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=118.9
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~ 79 (255)
|++|+.+++|+.||.++| +|||++ .+|+|||||+||+|+|.+++++||+|++|||++++++++|++||++.+..+.+
T Consensus 504 ~l~~~~~~~~~~Pf~~v~-~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~- 581 (800)
T PRK13208 504 TILRAYLLTGKLPWKNIM-ISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRR- 581 (800)
T ss_pred HHHHHHHhcCCCCcceEE-EeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHH-
Confidence 568899999988987764 557775 69999999999999999999999999999999977899999999999987654
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--HHhhhhh
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLR 157 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~--~~N~~~~ 157 (255)
.+++++|.++.+..... . ............|++++..+..+.+.+.++| ++|+++.|++.+++++. .+|+|++
T Consensus 582 --~l~kl~N~~r~~~~~~~-~-~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f~~~~~~n~Yie 656 (800)
T PRK13208 582 --LLTKLWNASRFVLHFSA-D-PEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESFFWHVFCDDYLE 656 (800)
T ss_pred --HHHHHHHHHHHHHhccc-c-cccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455544333221110 0 0011112334568899999999999999999 89999999999999985 6999997
Q ss_pred c
Q psy11866 158 G 158 (255)
Q Consensus 158 ~ 158 (255)
.
T Consensus 657 ~ 657 (800)
T PRK13208 657 L 657 (800)
T ss_pred H
Confidence 5
No 22
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.92 E-value=3.5e-24 Score=211.52 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=120.1
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHh---------hcChhHHHHHHhccCCCCCcccChh
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALN---------KHTARQLRLAFLLHAWHQTLDYSDN 71 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~---------~~~~d~lR~~ll~~~y~~~~~fs~~ 71 (255)
|+.+|.+++|+.||.++|+|..++..+|+|||||+||||+|.++++ +||+|++|||+++.+|++|++|+++
T Consensus 582 ~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~ 661 (974)
T PLN02843 582 SLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTGDVLIGPQ 661 (974)
T ss_pred HHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhcccCCCceeCHH
Confidence 4567788889889999999955566799999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH--
Q psy11866 72 TMEMAVTYEKLLNEFFLNV-KDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC-- 148 (255)
Q Consensus 72 ~l~~a~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l-- 148 (255)
.+.++.+..+++.+.+..+ +++..... . ..+ ........|++++..+..+.+.+.++| ++|++++|++.+++|
T Consensus 662 ~l~~~~~~~~kl~n~~rf~lgnl~~~~~-~-~~~-~~~~~~~~D~wiLskL~~li~~v~~ay-e~y~f~~A~~~i~~f~~ 737 (974)
T PLN02843 662 ILKQMSDIYRKLRGTLRYLLGNLHDWKP-D-NAV-PYEDLPSIDKYALFQLENVVNEIEESY-DNYQFFKIFQILQRFTI 737 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCc-c-ccc-CccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Confidence 9988765444444433322 11111110 0 001 112234568999999999999999999 999999999999988
Q ss_pred HHHHhhhhhc
Q psy11866 149 ISQVNIYLRG 158 (255)
Q Consensus 149 ~~~~N~~~~~ 158 (255)
...+|.|++.
T Consensus 738 ~dlsn~Yie~ 747 (974)
T PLN02843 738 VDLSNFYLDV 747 (974)
T ss_pred HHHhHHHHHh
Confidence 4699999985
No 23
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.92 E-value=3.1e-24 Score=211.86 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=117.2
Q ss_pred ccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
+.+|.+++|..||.+.|+| ||++ .+|+|||||+||||+|.+++++||+|++|||+++.+|++|++||++.+.++.+..
T Consensus 602 ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~ 680 (961)
T PRK13804 602 LLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETY 680 (961)
T ss_pred HHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHH
Confidence 4567777887777777666 7766 5999999999999999999999999999999999889999999999998765443
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhhc
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 158 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~~ 158 (255)
+.+.+++..+...+...... ............|++++..+.++.+.+.++| ++|++++|++.+++|+ ..+|.|++.
T Consensus 681 ~kL~N~~rf~l~nl~~~~~~-~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~l~~f~~~~lsn~Yle~ 758 (961)
T PRK13804 681 RKLRNTLRWLLGNLAHFDPG-EDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFKRIYKALVNFVNVDLSAFYFDI 758 (961)
T ss_pred HHHHHHHHHHHhccccCCcc-cccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443321111111000 0010122334568999999999999999999 9999999999999999 468999985
No 24
>PLN02943 aminoacyl-tRNA ligase
Probab=99.91 E-value=9.3e-24 Score=208.39 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=120.4
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
|++-+...+|+.||.++|+|.+++..+|+|||||+||||+|.+++++||+|++|||+++.+|++|++|+++.+..+.+
T Consensus 554 m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~-- 631 (958)
T PLN02943 554 MVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKA-- 631 (958)
T ss_pred HHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHH--
Confidence 345566667878999999997767799999999999999999999999999999999999999999999999988653
Q ss_pred HHHHHHHHHHHHHHhhccC-------------CCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11866 81 KLLNEFFLNVKDHIRNLKF-------------PATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRD 147 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~ 147 (255)
.+++++|..+.+...... .++...........|++++..+..+.+.+.++| ++|++..|++.+++
T Consensus 632 -~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~ 709 (958)
T PLN02943 632 -FTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYD 709 (958)
T ss_pred -HHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHH
Confidence 455555543332221100 000000011234578999999999999999999 99999999999999
Q ss_pred HH--HHHhhhhhc
Q psy11866 148 CI--SQVNIYLRG 158 (255)
Q Consensus 148 l~--~~~N~~~~~ 158 (255)
|+ ..+|+|++.
T Consensus 710 f~~~~~~d~YiE~ 722 (958)
T PLN02943 710 FFWSDFADWYIEA 722 (958)
T ss_pred HHHHHHHHHHHHh
Confidence 95 799999985
No 25
>PLN02882 aminoacyl-tRNA ligase
Probab=99.91 E-value=8.9e-24 Score=211.01 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=117.1
Q ss_pred CccccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhccCC--CCCcccChhHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAW--HQTLDYSDNTMEMAV 77 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y--~~~~~fs~~~l~~a~ 77 (255)
|++.|.+++|..| ++.+++||||+. +|+|||||+||+|+|.+++++||+|++|||+++.++ .+|++|+++.+....
T Consensus 585 ll~~s~~l~~~~p-fk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~ 663 (1159)
T PLN02882 585 LMVLSTALFDKPA-FKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVV 663 (1159)
T ss_pred HHHHHHHhcCCCC-cceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHH
Confidence 4566788898755 577899999987 899999999999999999999999999999998765 588999999988764
Q ss_pred HHHHHHHHHHHHHHHHHhhc-------cCCCCCccc--c-ccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11866 78 TYEKLLNEFFLNVKDHIRNL-------KFPATTVSS--F-EKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRD 147 (255)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~--~-~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~ 147 (255)
+ +.+..++|..+.++... ..++.+.+. . ......|+++++.+..+.+.+.++| ++|++.+|+..|++
T Consensus 664 ~--~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~m-e~y~f~~A~~~I~~ 740 (1159)
T PLN02882 664 K--DVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEM-GAYRLYTVVPYLVK 740 (1159)
T ss_pred H--HHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 3 23333444332222111 011011000 0 1124579999999999999999999 99999999999999
Q ss_pred HHH-HHhhhhhc
Q psy11866 148 CIS-QVNIYLRG 158 (255)
Q Consensus 148 l~~-~~N~~~~~ 158 (255)
|+. .+|+|++.
T Consensus 741 Fv~~lsN~YIe~ 752 (1159)
T PLN02882 741 FIDNLTNIYVRF 752 (1159)
T ss_pred HHHHHhHHHHHh
Confidence 996 69999985
No 26
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=7.1e-24 Score=208.66 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=115.8
Q ss_pred ccccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
+..+.+++|..|| +.++.|||++. +|+|||||+||||+|.+++++||+|++|||+++++|++|++||++.+.+..+..
T Consensus 564 l~~~~~~~g~~P~-k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~ 642 (912)
T PRK05743 564 LLTSVATRGKAPY-KQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAY 642 (912)
T ss_pred HHHHHHhcCCCcc-ceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHH
Confidence 3455677886665 56677799875 999999999999999999999999999999999889999999999998865433
Q ss_pred HHHHHHHHHHHHHHhhccC--CC-CCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhh
Q psy11866 81 KLLNEFFLNVKDHIRNLKF--PA-TTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIY 155 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~ 155 (255)
+.+.+.+..+ +..... .. ..++ .......|++++..+.++.+.+.++| ++|++++|++.+++|+ ..+|.|
T Consensus 643 ~kl~N~~rf~---~~nl~~~~~~~~~~~-~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 643 RRIRNTLRFL---LGNLNDFDPAKDAVP-YEELLELDRWALHRLAELQEEILEAY-ENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred HHHHHHHHHH---HhCccCCCcccccCC-chhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHhhhhhceee
Confidence 4444433332 221110 00 0011 12335578999999999999999999 9999999999999999 578999
Q ss_pred hhc
Q psy11866 156 LRG 158 (255)
Q Consensus 156 ~~~ 158 (255)
++.
T Consensus 718 ie~ 720 (912)
T PRK05743 718 LDI 720 (912)
T ss_pred hee
Confidence 875
No 27
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.91 E-value=2.9e-23 Score=194.72 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=129.5
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.|+++.+++||||+.+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+....|. ...+.++++
T Consensus 309 ~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~ 388 (530)
T TIGR00398 309 LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLN 388 (530)
T ss_pred CCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999999999999999999999999999986 5899999999999887542 234555555
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-CC-----CH
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TP-----NQ 162 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-~~-----~~ 162 (255)
++..+......+ ..+......+.|.+++..+..+...+.+++ ++|+++.|++.++++++.+|+|++. +| +.
T Consensus 389 r~~~~~~~~~~~--~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 389 RTLGFIKKYFNG--VLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHHHHHhcCC--cCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 544443332211 111111234568899999999999999999 9999999999999999999999986 22 11
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q psy11866 163 LLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 163 ~~l~~~~~~~~~~~~ilGi~~ 183 (255)
.....+...+.++++++.+..
T Consensus 466 ~~~~~~~~~l~~~l~~l~~ll 486 (530)
T TIGR00398 466 PRLKELLAVCSMLIRVLSILL 486 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 234455566666777766654
No 28
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=2.2e-23 Score=196.54 Aligned_cols=143 Identities=21% Similarity=0.144 Sum_probs=114.7
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.++|+.+++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+....+. .+.+.++.+
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~ 395 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVN 395 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHH
Confidence 4678899999999999999999999999999999999999999999987 5789999999998765432 223445555
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++..++...... ..+ .......|++++..+..+.+.+.++| ++|+++.|++.+++|++.+|+|++.
T Consensus 396 r~~~~~~~~~~~--~~~-~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~n~yi~~ 461 (556)
T PRK12268 396 RVLSFIEKYFGG--IVP-PGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREANKYLDE 461 (556)
T ss_pred HHHHHHHHhcCC--cCC-CCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 554444322211 111 11234568899999999999999999 9999999999999999999999976
No 29
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.6e-23 Score=206.64 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=114.3
Q ss_pred ccccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~ 79 (255)
++-+...+|..||.+ ++.||||+. +|+|||||+||||+|.+++++||+|++||||++. ++.+|++||++.+....+
T Consensus 510 l~~~~~~~~~~Pfk~-V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~- 587 (1052)
T PRK14900 510 MMMGLHFMGEVPFRT-VYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRA- 587 (1052)
T ss_pred HHHHHHhcCCCccce-eEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHH-
Confidence 444555667667655 566699886 9999999999999999999999999999999986 699999999999976543
Q ss_pred HHHHHHHHHHHHHHHhh---ccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhh
Q psy11866 80 EKLLNEFFLNVKDHIRN---LKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNI 154 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~ 154 (255)
++++++| +.+++.. ........+........|++++..+..+...+.++| ++|++..|+..+++|+ ..+|+
T Consensus 588 --f~nkl~N-~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~ 663 (1052)
T PRK14900 588 --FANKLWN-ASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDW 663 (1052)
T ss_pred --HHHHHHH-HHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHH
Confidence 4555555 2222211 110001111111234568999999999999999999 9999999999999998 58999
Q ss_pred hhhc
Q psy11866 155 YLRG 158 (255)
Q Consensus 155 ~~~~ 158 (255)
|++.
T Consensus 664 Yie~ 667 (1052)
T PRK14900 664 YIEL 667 (1052)
T ss_pred HHHh
Confidence 9986
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=2.5e-23 Score=204.59 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=119.6
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVT 78 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~ 78 (255)
|++++.+++|+.||.+.|+| |++. .+|+|||||+||||+|.|++++||+|++|||+++. ++++|++|+++.+....+
T Consensus 491 ~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~ 569 (874)
T PRK05729 491 MIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRN 569 (874)
T ss_pred HHHHHHHhcCCCchhheEEe-eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHH
Confidence 56778888888888888777 6665 89999999999999999999999999999999987 699999999999987754
Q ss_pred HHHHHHHHHHHHHHHHhhccC-CCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhh
Q psy11866 79 YEKLLNEFFLNVKDHIRNLKF-PATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIY 155 (255)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~ 155 (255)
.+++++|..+.+...... .....+........|++++..+..+.+.+.++| ++|++..|+..+++|+ ..+|+|
T Consensus 570 ---~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~l~~f~~~~~~~~Y 645 (874)
T PRK05729 570 ---FANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARALYEFIWNEFCDWY 645 (874)
T ss_pred ---HHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 445555433222111000 001111112335578999999999999999999 9999999999999998 589999
Q ss_pred hhc
Q psy11866 156 LRG 158 (255)
Q Consensus 156 ~~~ 158 (255)
++.
T Consensus 646 le~ 648 (874)
T PRK05729 646 LEL 648 (874)
T ss_pred HHH
Confidence 986
No 31
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-23 Score=202.31 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=121.9
Q ss_pred ccccccCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q psy11866 4 RFQAYFNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEKL 82 (255)
Q Consensus 4 Qs~a~~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~~ 82 (255)
-|.|.+|+.|+.+.++| || |.-+|+|||||+||+|+|.+++++||+|+||+|++++.|..|+.||++.+++.....+.
T Consensus 576 ~s~a~~~~aPYk~vltH-GfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~ 654 (933)
T COG0060 576 TSTALFGRAPYKNVLTH-GFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRK 654 (933)
T ss_pred HHHHHcCCchHHHHhhc-ccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHH
Confidence 46788998898887666 66 78899999999999999999999999999999999999999999999998887765556
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhhc
Q psy11866 83 LNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 158 (255)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~~ 158 (255)
+.|.+..+...+...... ........+...|++++..++.+.+.+.++| ++|++.+++..+++|+ ..+|+|++-
T Consensus 655 irNt~rF~l~nl~~fdp~-~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~~l~~F~~~dLS~~Yld~ 730 (933)
T COG0060 655 IRNTYRFLLGNLDDFDPK-KDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVRALMNFVSEDLSNWYLDI 730 (933)
T ss_pred HHHHHHHHHHhccCCCcc-ccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 665555443333221100 0001223456679999999999999999999 9999999999999999 478999864
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=8.7e-23 Score=195.82 Aligned_cols=140 Identities=22% Similarity=0.207 Sum_probs=113.3
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCC-CCcccChhHHHHHHHH--HHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWH-QTLDYSDNTMEMAVTY--EKLLNEFF 87 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~-~~~~fs~~~l~~a~~~--~~~l~~~~ 87 (255)
.|+|+.++.||||+.+|+|||||+||+|+|.|++++||+|++|||+++. +.. +|.+|+++.+....+. .+.+.++.
T Consensus 311 ~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 311 YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999987 577 8999999998765542 22344444
Q ss_pred HHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 88 LNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
+++..++.+...+ .++ ..+.+.+++..+..+.+.+.++| +.|+++.|++.++++++.+|+|++.
T Consensus 391 ~R~~~~~~k~~~~--~~~----~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~yi~~ 454 (673)
T PRK00133 391 SRTAGFINKRFDG--KLP----DALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKYVDD 454 (673)
T ss_pred HHHHHHHHHhcCC--CCC----CCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444332221 111 12357889999999999999999 9999999999999999999999986
No 33
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.90 E-value=5.4e-23 Score=202.21 Aligned_cols=152 Identities=24% Similarity=0.260 Sum_probs=118.5
Q ss_pred CccccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTMEMAVT 78 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a~~ 78 (255)
|++.+.+.+|..||.+.++| ||++. +|+|||||+||+|+|.+++++||+|++|||+++.+ ..+|++|+++.+..+.+
T Consensus 496 ~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~ 574 (861)
T TIGR00422 496 MIFRSLALTGQVPFKEVYIH-GLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARN 574 (861)
T ss_pred HHHHHHHhcCCCchheEEEe-eEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHH
Confidence 56777888888888766555 88774 99999999999999999999999999999999886 59999999999987754
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccc-cccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhh
Q psy11866 79 YEKLLNEFFLNVKDHIRNLKFPATTVSS-FEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIY 155 (255)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~ 155 (255)
.+++++|.. +++..........+. .......|++++..+..+.+.+.++| ++|+++.|++.+++|+ ..+|+|
T Consensus 575 ---~~nkl~N~~-rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~~f~~~~~~n~Y 649 (861)
T TIGR00422 575 ---FLNKLWNAS-RFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALYEFIWNDFCDWY 649 (861)
T ss_pred ---HHHHHHHHH-HHHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 566666632 222211111001110 11234578999999999999999999 9999999999999997 799999
Q ss_pred hhc
Q psy11866 156 LRG 158 (255)
Q Consensus 156 ~~~ 158 (255)
++.
T Consensus 650 ie~ 652 (861)
T TIGR00422 650 IEL 652 (861)
T ss_pred HHH
Confidence 975
No 34
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.90 E-value=5.9e-23 Score=204.83 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=119.0
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-C-CCCCcccChhHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-A-WHQTLDYSDNTMEMAV 77 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~-y~~~~~fs~~~l~~a~ 77 (255)
|++.|.+++|+.||.+.+ .||||+ .+|+|||||+||+|+|.+++++||+|++|||+++. . ..+|++|+++.+.+..
T Consensus 691 ~l~~s~~l~~~~PfK~Vl-vHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~ 769 (1205)
T PTZ00427 691 LLVISTLLFDKAPFKNLI-CNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVV 769 (1205)
T ss_pred HHHHHHHhcCCCCcceeE-EccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHH
Confidence 566788999998887755 559987 59999999999999999999999999999999986 4 4689999999987655
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-------CCCCccc--cccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy11866 78 TYEKLLNEFFLNVKDHIRNLKF-------PATTVSS--FEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC 148 (255)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l 148 (255)
+ +.++++||..+.+...... .+...+. .......|+|+++.+..+.+.+.++| ++|++..|+..|++|
T Consensus 770 r--~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m-e~Y~f~~A~~~i~~F 846 (1205)
T PTZ00427 770 K--SFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM-KAYKLYNVLPKLLQF 846 (1205)
T ss_pred H--HHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 3 4556666654433221100 0000000 11234579999999999999999999 999999999999999
Q ss_pred HH-HHhhhhhc
Q psy11866 149 IS-QVNIYLRG 158 (255)
Q Consensus 149 ~~-~~N~~~~~ 158 (255)
+. .+|+|++.
T Consensus 847 i~~lsnwYIe~ 857 (1205)
T PTZ00427 847 IENLTNWYIRL 857 (1205)
T ss_pred HHHhccHHHHH
Confidence 96 89999984
No 35
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=193.88 Aligned_cols=152 Identities=23% Similarity=0.241 Sum_probs=122.7
Q ss_pred CccccccccCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVT 78 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~ 78 (255)
|+.++...+|+.||...++| |+ ..-+|+|||||+||||+|.+++++||+|++||++++. +.++|++|+++.++..+|
T Consensus 496 mi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 496 MIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred HHHHHHHhcCCCCccEEEEe-eeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHH
Confidence 67888889999999987666 66 5789999999999999999999999999999999987 799999999999999864
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-CCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhh
Q psy11866 79 YEKLLNEFFLNVKDHIRNLKFP-ATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIY 155 (255)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~ 155 (255)
+.+++||..+.+....... ...... ......|+|++..++++.+.+.++| ++|++..|...+++|+ ..|++|
T Consensus 575 ---F~nKlWNa~Rfv~~~~~~~~~~~~~~-~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~ly~F~W~~fcD~Y 649 (877)
T COG0525 575 ---FLNKLWNATRFVLMNLDDLGPDDLDL-LALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARALYEFIWNDFCDWY 649 (877)
T ss_pred ---HHHHHHhHHHHHHhcccccCcccccc-cccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhHHHHHHHH
Confidence 5666666544433211110 001100 1224679999999999999999999 9999999999999998 479999
Q ss_pred hhc
Q psy11866 156 LRG 158 (255)
Q Consensus 156 ~~~ 158 (255)
+..
T Consensus 650 lEl 652 (877)
T COG0525 650 LEL 652 (877)
T ss_pred HHH
Confidence 975
No 36
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.89 E-value=1.3e-22 Score=199.65 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=114.0
Q ss_pred cccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHH-HH
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVT-YE 80 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~-~~ 80 (255)
..+.+++|..||.+ ++.||||+ .+|+|||||+||||+|.|++++||+|++|||+++.++.+|++|+++.+....+ ..
T Consensus 584 ~~~~~~~~~~P~k~-v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~ 662 (861)
T TIGR00392 584 AIGTALFGQAPYKN-VITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYR 662 (861)
T ss_pred HHHHHHcCCCChHh-hEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHH
Confidence 34555667666655 55558877 49999999999999999999999999999999999999999999999987654 33
Q ss_pred HHHHHHHHHHH--HHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH--Hhhhh
Q psy11866 81 KLLNEFFLNVK--DHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQ--VNIYL 156 (255)
Q Consensus 81 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~--~N~~~ 156 (255)
+.+.|++..+. ..+... .+.............|.+++..+..+.+.+.++| ++|+++.|++.+++|+.. +|.|+
T Consensus 663 n~l~N~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~f~~~~l~n~Yi 740 (861)
T TIGR00392 663 KIRWNTYRFLLTYANLDKF-DPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNFHKVLRALQDFIVEELSNWYI 740 (861)
T ss_pred HHHHHHHHHHHHHhccccC-CccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 111111 0000000112234568899999999999999999 899999999999999864 99998
Q ss_pred hc
Q psy11866 157 RG 158 (255)
Q Consensus 157 ~~ 158 (255)
+.
T Consensus 741 ~~ 742 (861)
T TIGR00392 741 RI 742 (861)
T ss_pred HH
Confidence 75
No 37
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=3.3e-22 Score=198.20 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=113.3
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHH-HHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTM-EMAV 77 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l-~~a~ 77 (255)
|++.|.+.+|..||.+.++| ||++ .+|+|||||+||+|+|.+++++||+|++|||+++.+ .++|++||++.+ ..+.
T Consensus 563 l~~~~~~~~~~~pfk~v~~h-G~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 563 LLALSTALFDRPPYKNVLVH-GHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred HHHHHHHhcCCCcccEEEEe-eeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 34556778888888766555 7765 599999999999999999999999999999999986 599999999994 4443
Q ss_pred HHHHHHHHHHHHHHHHH---hhcc-CCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-H
Q psy11866 78 TYEKLLNEFFLNVKDHI---RNLK-FPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQ-V 152 (255)
Q Consensus 78 ~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~-~ 152 (255)
+ .++.++|.+..+. .... ......+......+.|++++..+..+.+.+.++| ++|+++.|++.+++|+.. +
T Consensus 642 ~---~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~ls 717 (975)
T PRK06039 642 K---FLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLS 717 (975)
T ss_pred H---HHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Confidence 3 3344444333221 1000 0000001112345678999999999999999999 899999999999999965 5
Q ss_pred hhhhhc
Q psy11866 153 NIYLRG 158 (255)
Q Consensus 153 N~~~~~ 158 (255)
|+|++.
T Consensus 718 n~Yi~~ 723 (975)
T PRK06039 718 NWYIRR 723 (975)
T ss_pred HHHHHH
Confidence 889874
No 38
>PLN02959 aminoacyl-tRNA ligase
Probab=99.86 E-value=3.9e-21 Score=191.54 Aligned_cols=141 Identities=22% Similarity=0.250 Sum_probs=108.6
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~ 79 (255)
|+..+.+++|+.|||+.+++||||+.+|+|||||+||||+|.+++++||+|++|||+++. .+.+|.+|+++....+.
T Consensus 689 ~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~-- 766 (1084)
T PLN02959 689 AIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAI-- 766 (1084)
T ss_pred HHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHH--
Confidence 355677889999999999999999999999999999999999999999999999999987 58899999998877654
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHH
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDS-IRDCI 149 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~-l~~l~ 149 (255)
..+.+++..+...+.... . ..........|+++++.++.+...+.++| +.|++..|++. ++++.
T Consensus 767 -~~l~n~~~~~~~~~~~~~-~---~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Yel~ 831 (1084)
T PLN02959 767 -LRLTKEIAWMEEVLAAES-S---LRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYDLQ 831 (1084)
T ss_pred -HHHHHHHHHHHHhhhhhc-c---cCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHH
Confidence 234333322222211100 0 00011234578999999999999999999 99999999987 34443
No 39
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.86 E-value=4e-21 Score=187.13 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=107.0
Q ss_pred cCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHH
Q psy11866 9 FNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFF 87 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~ 87 (255)
.|+.||.+ ++||||+ |||||+||||+|.+++++||+|++|||+++. +|++|++|+++.+.++.+ .+++++
T Consensus 555 ~~~~Pfk~-v~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~---~l~kl~ 625 (805)
T PRK00390 555 SSDEPFKK-LLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYR---FLQRVW 625 (805)
T ss_pred cCCcchhh-heecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHH---HHHHHH
Confidence 46678765 8999999 9999999999999999999999999999984 899999999999998864 455555
Q ss_pred HHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhh
Q psy11866 88 LNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 156 (255)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~ 156 (255)
+.+........ . .. ......|++++..+..+.+.+.++| ++|+++.|++.+++|+...++|.
T Consensus 626 ~~~~~~~~~~~-~---~~--~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 626 RLVVDAKGEAG-A---LD--VAALSEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HHHHHhhhccc-c---cC--cccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHH
Confidence 55443221110 0 00 1123468899999999999999999 89999999999999999888876
No 40
>PLN02381 valyl-tRNA synthetase
Probab=99.85 E-value=6.2e-21 Score=189.66 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=118.2
Q ss_pred CccccccccCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh---------------------------------
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN--------------------------------- 46 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~--------------------------------- 46 (255)
|+..+..++|+.||.+.++| |++ ..+|+|||||+||||+|.++++
T Consensus 626 mi~~~~~~~~~~PFk~v~~h-G~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p 704 (1066)
T PLN02381 626 MVMMGMQLGGDVPFRKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFP 704 (1066)
T ss_pred HHHHHHHhCCCCchHHheec-ceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCC
Confidence 55667778899999987666 775 5799999999999999999999
Q ss_pred ----hcChhHHHHHHhccC-CCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--ccccccCCHHHHHHHH
Q psy11866 47 ----KHTARQLRLAFLLHA-WHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATT--VSSFEKWTQADLELST 119 (255)
Q Consensus 47 ----~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 119 (255)
+||+|++|||+++.. ..++++|+.+.+...+ +.++++||.++.++......+.+ ..........|+|++.
T Consensus 705 ~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r---~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILs 781 (1066)
T PLN02381 705 NGIAECGTDALRFALVSYTAQSDKINLDILRVVGYR---QWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILS 781 (1066)
T ss_pred CCccccChHHHHHHHHcCCccccccCccHHHHHHHH---HHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHH
Confidence 799999999999874 6789999999988665 35555565554433211100000 0011223457999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhhc
Q psy11866 120 RFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 158 (255)
Q Consensus 120 ~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~~ 158 (255)
.+..+...+.++| +.|++..|++.+++|+ ..+|+|++.
T Consensus 782 kL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie~ 821 (1066)
T PLN02381 782 VLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIEA 821 (1066)
T ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999 9999999999999995 689999975
No 41
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.85 E-value=9.4e-21 Score=188.53 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=116.2
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHh---------------------------------
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALN--------------------------------- 46 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~--------------------------------- 46 (255)
|++.+.+++|+.||.+. ++||++. .+|+|||||+||||+|.++++
T Consensus 556 m~~~~~~~~~~~Pfk~v-~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~ 634 (995)
T PTZ00419 556 MVMMSLHLTDKLPFKTV-FLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFP 634 (995)
T ss_pred HHHHHHHhcCCCChHHH-hccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCC
Confidence 45566777887787765 5558865 499999999999999999999
Q ss_pred ----hcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCcc------ccccCCHHH
Q psy11866 47 ----KHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPA-TTVS------SFEKWTQAD 114 (255)
Q Consensus 47 ----~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~ 114 (255)
+||+|++|||+++. ...+|++|+.+.+.... +++++++|.++.++....... .... ........|
T Consensus 635 ~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~---~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 711 (995)
T PTZ00419 635 NGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYR---HFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWED 711 (995)
T ss_pred CCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHH---HHHHHHHHHHHHHHhcccccccccccccccccccccCCHHH
Confidence 89999999999986 57889999999988654 455666665554332111000 0000 012234568
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhhc
Q psy11866 115 LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 158 (255)
Q Consensus 115 ~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~~ 158 (255)
++++..+..+.+.+.++| ++|+++.|++.+++|+ ..+|+|++.
T Consensus 712 ~wIls~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie~ 756 (995)
T PTZ00419 712 KWILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLEL 756 (995)
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999 9999999999999974 689999985
No 42
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.84 E-value=1e-21 Score=162.89 Aligned_cols=68 Identities=49% Similarity=0.699 Sum_probs=65.7
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccC
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYS 69 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs 69 (255)
|+|||+|++|+ ||+++|+|+|++.++|+|||||+||+|+|.|++++|++|++|||+++.+|+++++|+
T Consensus 146 ~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 146 EIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 57999999997 999999999999999999999999999999999999999999999999999999986
No 43
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.83 E-value=7.1e-20 Score=178.93 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=107.9
Q ss_pred ccCCCcccceeeeeeEeee-----cCc---------------------------cccccCCCccCHHHHHhhcChhHHHH
Q psy11866 8 YFNNDSWVRYFLHSGHLTI-----AGC---------------------------KMSKSLKNFITIQDALNKHTARQLRL 55 (255)
Q Consensus 8 ~~~~~~~~~~~~h~g~l~~-----~g~---------------------------KMSKSlGN~i~~~d~l~~~~~d~lR~ 55 (255)
..++.||.+ ++.|||+.- +|+ |||||+||+|+|.+++++||+|++||
T Consensus 551 ~~~~~Pfk~-l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl 629 (842)
T TIGR00396 551 VSTKEPFKK-LINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRL 629 (842)
T ss_pred cCCCccHHH-HhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHH
Confidence 456788886 566699875 788 99999999999999999999999999
Q ss_pred HHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy11866 56 AFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCD 134 (255)
Q Consensus 56 ~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~d 134 (255)
|+++. +|+++++|+++.+..+.+.. +++++.+..+....... ... ........|++++..+..+.+.+.++| +
T Consensus 630 ~~l~~~~~~~d~~~~~~~l~~~~~~l---~kl~~~~~~~~~~~~~~-~~~-~~~~l~~~d~~il~~l~~~i~~v~~~~-e 703 (842)
T TIGR00396 630 YIMFMGPIAASLEWNDSGLEGARRFL---DRVWNLFYNILGELDGK-TYL-TPTILEEAQKELRRDVHKFLKKVTEDL-E 703 (842)
T ss_pred HHHhcCCcCCCCccCHHHHHHHHHHH---HHHHHHHHHHHhhhccc-ccC-CcccCCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99965 89999999999999887544 44444433322211100 000 011234578999999999999999999 7
Q ss_pred cCC-HHHHHHHHHHHHHHHhhhh
Q psy11866 135 NMD-TRSALDSIRDCISQVNIYL 156 (255)
Q Consensus 135 d~~-~~~al~~l~~l~~~~N~~~ 156 (255)
+|. ++.|++.+++|+....++.
T Consensus 704 ~y~~fn~ai~~l~~f~n~L~~~~ 726 (842)
T TIGR00396 704 KLESFNTAISAMMILLNALYKAK 726 (842)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Confidence 877 9999999999998766653
No 44
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7.8e-19 Score=167.90 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=115.0
Q ss_pred cccCCCcccce-----eeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH
Q psy11866 7 AYFNNDSWVRY-----FLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 7 a~~~~~~~~~~-----~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~ 79 (255)
|+++..-|++. ++.+||++. +|+|||||+||+|+|.+++++||+|++|+|+++. +..++++|+++.+..+.
T Consensus 550 al~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~-- 627 (814)
T COG0495 550 ALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGAR-- 627 (814)
T ss_pred HhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHH--
Confidence 34443344444 899999999 7999999999999999999999999999999987 68899999999999986
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHH-HHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhhhhh
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQAD-LELSTRFIQTKNNVHAALCDN-MDTRSALDSIRDCISQVNIYLR 157 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~al~dd-~~~~~al~~l~~l~~~~N~~~~ 157 (255)
+.|+++++.+.......... ....+ ......++++.+.+.+.+ +. +.+..|++.+|+|++...+|..
T Consensus 628 -rfL~r~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~~~v~~~~-e~~~~~nt~i~~~m~l~N~l~~~~~ 696 (814)
T COG0495 628 -RFLQRVWNLVKEHLEKLVEE---------LTKEQGKEDRWLLHRTIKKVTEDF-EARQTFNTAIAALMELLNALRKYLR 696 (814)
T ss_pred -HHHHHHHHHHHHhhhccccc---------ccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777776665543211000 00011 223334566677788887 44 8888999999999999999887
Q ss_pred c-CCCHHHHHHHHHHHHHhhhcc
Q psy11866 158 G-TPNQLLLRDIGAYVTKILTVF 179 (255)
Q Consensus 158 ~-~~~~~~l~~~~~~~~~~~~il 179 (255)
. ..+..++..++..+..+|.++
T Consensus 697 ~~~~~~~~l~~~l~~~v~lLaP~ 719 (814)
T COG0495 697 RTEGDRKVLREALETWVRLLAPF 719 (814)
T ss_pred cccchHHHHHHHHHHHHHHhccc
Confidence 5 222344555555555555443
No 45
>PLN02563 aminoacyl-tRNA ligase
Probab=99.78 E-value=1.8e-18 Score=170.04 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=90.2
Q ss_pred cccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q psy11866 30 KMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFE 108 (255)
Q Consensus 30 KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (255)
|||||+||+|+|.+++++||+|++|||+++. +..++.+|+.+.+..+. +.++++|+.+........ ..... ...
T Consensus 723 KMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~---rfL~rlwn~~~~~~~~~~-~~~~~-~~~ 797 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVH---RFLGRTWRLVVGAPLPDG-SFRDG-TVV 797 (963)
T ss_pred ccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHH---HHHHHHHHHHHHhhhccc-ccCcc-ccc
Confidence 9999999999999999999999999999987 57788899999998875 456666665543211000 00000 000
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh
Q psy11866 109 KWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI 154 (255)
Q Consensus 109 ~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~ 154 (255)
.....+.+++..+..+.+++.++| ++|++..|++.+++|+...+.
T Consensus 798 ~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi~~lmef~n~l~~ 842 (963)
T PLN02563 798 TDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAISAMMEFTNAAYK 842 (963)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhC
Confidence 111246778899999999999999 899999999999999987664
No 46
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.77 E-value=8.3e-18 Score=158.55 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=136.7
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHH-----------------------HHHhhcChhHHHHHHhccCCCCCccc
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQ-----------------------DALNKHTARQLRLAFLLHAWHQTLDY 68 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~-----------------------d~l~~~~~d~lR~~ll~~~y~~~~~f 68 (255)
.|++..+.|++|++++|.|||||+||+|+|. ++.+.+|.|++||++|+....+|++|
T Consensus 354 ~~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~F 433 (566)
T TIGR00456 354 FYKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVF 433 (566)
T ss_pred CCCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCcee
Confidence 4678889999999999999999999999998 67777899999999999988999999
Q ss_pred ChhHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCcc--ccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy11866 69 SDNTMEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVS--SFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSI 145 (255)
Q Consensus 69 s~~~l~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l 145 (255)
+++.+.... +....+++.++|+.+++++......... .....++.+..+...+..+++.+..++ ++++++.++..+
T Consensus 434 d~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l 512 (566)
T TIGR00456 434 DWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYL 512 (566)
T ss_pred cHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHH
Confidence 999876643 2345778888888888776532100000 011124567788888999999999999 999999999999
Q ss_pred HHHHHHHhhhhhc-----CCCH-------HHHHHHHHHHHHhhhccccccC
Q psy11866 146 RDCISQVNIYLRG-----TPNQ-------LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 146 ~~l~~~~N~~~~~-----~~~~-------~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
+++++.+|.|++. .+++ .++.++...+...|.+|||...
T Consensus 513 ~~La~~~N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 513 YELASLFSSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999975 1221 2456788888899999999643
No 47
>KOG0433|consensus
Probab=99.76 E-value=6.7e-18 Score=156.09 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=115.3
Q ss_pred cccccCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHhh------cChhHHHHHHhccCCCCCcccChhHHHHHH
Q psy11866 5 FQAYFNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALNK------HTARQLRLAFLLHAWHQTLDYSDNTMEMAV 77 (255)
Q Consensus 5 s~a~~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~~------~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~ 77 (255)
|.|+.++.|+...+.| || +..+|.|||||+||||+|+.++++ ||+|++|||..++.+..++..++..|.++.
T Consensus 588 svA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~ 666 (937)
T KOG0433|consen 588 SVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVD 666 (937)
T ss_pred HHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHHHHH
Confidence 4566778898876666 66 889999999999999999999998 999999999998889999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--HHhhh
Q psy11866 78 TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIY 155 (255)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~--~~N~~ 155 (255)
.....+++.++.+..-+...... ....+...+...|+.++.++.++.+++.+.+ ++|++.+++..+..|+. ..|.|
T Consensus 667 e~l~K~R~T~RfllGnl~d~~~~-~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y~f~kVv~~lq~F~~~~lSa~Y 744 (937)
T KOG0433|consen 667 EKLIKFRNTFRFLLGNLQDFDGK-QVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDYKFRKVVNDLQQFLQRNLSAFY 744 (937)
T ss_pred HHHHHHHhHHHHHhhcccccCCc-cccccchhhhhhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhHHH
Confidence 64445554443332211211110 0111233344468889999999999999998 99999999999999884 67788
Q ss_pred hhc
Q psy11866 156 LRG 158 (255)
Q Consensus 156 ~~~ 158 (255)
++-
T Consensus 745 fdi 747 (937)
T KOG0433|consen 745 FDI 747 (937)
T ss_pred HHH
Confidence 764
No 48
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.74 E-value=1.7e-17 Score=131.66 Aligned_cols=118 Identities=24% Similarity=0.258 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCC
Q psy11866 122 IQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTN 201 (255)
Q Consensus 122 ~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~ 201 (255)
..+...|.++|+||||||.|++.|+++++.+|.+++.. ...+..+...+..++.+|||........+...+ ... +
T Consensus 32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~--~~~~~~~~~~l~~~~~vLGl~~~~~~~~~~~~~--~~~-~ 106 (156)
T cd07963 32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKED--IEKAAALAALLKALGGVLGLLQQDPEAFLQGGT--GEG-G 106 (156)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHhccCCCCCCHHHHHhccc--ccc-c
Confidence 34568899999999999999999999999999988652 223455666677888999995321100011000 000 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHhhhcCCCCCCceeccCC
Q psy11866 202 LEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 202 ~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
. ..+.|+.|+ ++|.+||+.|| |+.||+||++ |.++||.|+|+|
T Consensus 107 ~---~~~~v~~Ll----~~R~~aR~~Kd---f~~AD~IRd~-L~~~Gi~i~Dt~ 149 (156)
T cd07963 107 L---SVAEIEALI----AQRNQARKAKD---WAEADRIRDE-LAAQGIILEDSP 149 (156)
T ss_pred c---CHHHHHHHH----HHHHHHHHhcC---HHHHHHHHHH-HHHCCcEEEECC
Confidence 0 112467777 68999999999 8999999999 799999999986
No 49
>KOG0432|consensus
Probab=99.72 E-value=9.1e-17 Score=151.17 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=115.3
Q ss_pred cccccccCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh------------------------------hc---
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN------------------------------KH--- 48 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~------------------------------~~--- 48 (255)
.-+.-++|+.||.+.++| |++ .-.|+|||||+||||+|.|+|+ .|
T Consensus 566 mLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnG 644 (995)
T KOG0432|consen 566 MLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNG 644 (995)
T ss_pred HhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC
Confidence 334456799999998777 665 7889999999999999999998 45
Q ss_pred ----ChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc--ccccCC-HHHHHHHHH
Q psy11866 49 ----TARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVS--SFEKWT-QADLELSTR 120 (255)
Q Consensus 49 ----~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~ 120 (255)
|.|++||.|++. +-..|++++-..+...+ .+.|++||..+.++.....++.+.+ ...... ..+.|++..
T Consensus 645 IpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r---~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsr 721 (995)
T KOG0432|consen 645 IPECGTDALRFALCSYTTQGRDINLDVLRVEGYR---HFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSR 721 (995)
T ss_pred CcccchHHHHHHHHHccccCccccccHHHHhhHH---HHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHH
Confidence 999999999886 67889999999988876 4556666666554443221101111 111111 168999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhhc
Q psy11866 121 FIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG 158 (255)
Q Consensus 121 l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~~ 158 (255)
+....+.+.++| +.|++..|.+++..|. ..+.-|+..
T Consensus 722 L~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE~ 760 (995)
T KOG0432|consen 722 LAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLEA 760 (995)
T ss_pred HHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999986 577888765
No 50
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=9.9e-17 Score=149.58 Aligned_cols=168 Identities=13% Similarity=0.145 Sum_probs=125.6
Q ss_pred cceeeeeeE--ee-ecCccccccCCCccCHHHHHhh-cCh----------------hHHHHHHhccCCCCCcccChhHHH
Q psy11866 15 VRYFLHSGH--LT-IAGCKMSKSLKNFITIQDALNK-HTA----------------RQLRLAFLLHAWHQTLDYSDNTME 74 (255)
Q Consensus 15 ~~~~~h~g~--l~-~~g~KMSKSlGN~i~~~d~l~~-~~~----------------d~lR~~ll~~~y~~~~~fs~~~l~ 74 (255)
.++|.|..+ +. -+|+|||||+||+|+|.|++++ ++. |++||++++.++.+|++|+++.+.
T Consensus 304 ~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~ 383 (507)
T PRK01611 304 LEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLAL 383 (507)
T ss_pred ceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHH
Confidence 367899555 32 2678999999999999999999 999 999999999999999999999987
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhccCCCCCccccccC-CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q psy11866 75 MAVT-YEKLLNEFFLNVKDHIRNLKFPATTVSSFEKW-TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQV 152 (255)
Q Consensus 75 ~a~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~ 152 (255)
.... .--.++..+.++..+.++.... ...+..... ++.+.+++..+..+++.+.+++ +++++..++..+++|++..
T Consensus 384 ~~~~~~~~yvqYa~aR~~sil~k~~~~-~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~~f 461 (507)
T PRK01611 384 SFEGNNPPYVQYAHARICSILRKAAEA-GIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAGAF 461 (507)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHhhhcc-CccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHH
Confidence 6643 1124454555666665543211 000000112 4678899999999999999999 9999999999999999988
Q ss_pred hhhhhc-----CCC-H-----HHHHHHHHHHHHhhhccccccC
Q psy11866 153 NIYLRG-----TPN-Q-----LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 153 N~~~~~-----~~~-~-----~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
|.|.+. .+. . .++.++...+...|.+|||...
T Consensus 462 ~~fY~~~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 462 HSFYNRVLLKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 887762 111 1 2356777888899999999643
No 51
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.67 E-value=2.6e-17 Score=148.45 Aligned_cols=69 Identities=30% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH
Q psy11866 11 NDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 11 ~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~ 79 (255)
+.|+|+.++.||||+++|+|||||+||+|+|.|+++.||+|++||||++. +..+|.+|+++.+.+..|.
T Consensus 308 ~~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~ 377 (391)
T PF09334_consen 308 GLPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNN 377 (391)
T ss_dssp TB---SEEEEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHH
T ss_pred cCCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999997 6889999999999887763
No 52
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.67 E-value=3.6e-17 Score=143.84 Aligned_cols=67 Identities=27% Similarity=0.252 Sum_probs=60.3
Q ss_pred CccccccccCCCcccceeeeeeEeeecC-ccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCccc
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAG-CKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDY 68 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g-~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~f 68 (255)
++||++|+.+..|+.++|+| ||++.+| +|||||+||+|+|.|++++||+|++|||+++.+ +++|.+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 244 WITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 46899998875588888888 9998887 999999999999999999999999999999885 8888876
No 53
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.59 E-value=8.4e-16 Score=136.48 Aligned_cols=66 Identities=29% Similarity=0.378 Sum_probs=54.9
Q ss_pred cccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCccc
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDY 68 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~f 68 (255)
..+.++.|..||.++|+|..++..+|+|||||+||+|+|.|++++||+|++||||++.+ +.+|++|
T Consensus 272 ~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 272 LLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 34556667777788777744455689999999999999999999999999999999885 8888765
No 54
>KOG0434|consensus
Probab=99.58 E-value=1.2e-14 Score=133.99 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=114.6
Q ss_pred cccccCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhccC--CCCCcccChhHHHHHHHHHH
Q psy11866 5 FQAYFNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA--WHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 5 s~a~~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~--y~~~~~fs~~~l~~a~~~~~ 81 (255)
|.++||+.||.| .+++|.+ ..+|+|||||+.|.-+|..++++||+|++|+||+.++ -..++.|.++.+.+... .
T Consensus 576 sT~LF~kppfkN-vIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk--~ 652 (1070)
T KOG0434|consen 576 STALFGKPPFKN-VIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVK--D 652 (1070)
T ss_pred HHHHcCCCcchh-eeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHH--h
Confidence 568899888887 5777885 6789999999999999999999999999999999987 34689999999998764 3
Q ss_pred HHHHHHHHHHHHHhh----ccC-C--CCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHh
Q psy11866 82 LLNEFFLNVKDHIRN----LKF-P--ATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS-QVN 153 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~-~~N 153 (255)
.+--|||.++.+... ... + +..-......+..|+|+.+..+.+..-+.+.| +.|.....+..+..|++ .+|
T Consensus 653 v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~~YrLytVvp~llkfiD~LTN 731 (1070)
T KOG0434|consen 653 VLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-DQYRLYTVVPRLLKFIDELTN 731 (1070)
T ss_pred hhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-HheehhhhHHHHHHHHHHhhh
Confidence 344455544332211 111 0 00000111234579999999999999999999 99999999999999996 689
Q ss_pred hhhhc
Q psy11866 154 IYLRG 158 (255)
Q Consensus 154 ~~~~~ 158 (255)
+|+.-
T Consensus 732 wYiR~ 736 (1070)
T KOG0434|consen 732 WYIRF 736 (1070)
T ss_pred hheeh
Confidence 99853
No 55
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.56 E-value=1.2e-15 Score=144.95 Aligned_cols=67 Identities=30% Similarity=0.355 Sum_probs=50.1
Q ss_pred ccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccC
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYS 69 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs 69 (255)
+.-+.+++++.||.+ +++|||+. .+|+|||||+||||+|.+++++||+|++|+|+++ +.+.+|++||
T Consensus 533 l~~~~~l~~~~pfk~-v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 533 LFLSVALFGKEPFKK-VITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHHSSSTSBSE-EEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HhhccccccCCchhe-eeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 445678889899966 56668875 6899999999999999999999999999999994 5799999986
No 56
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.55 E-value=2.3e-15 Score=135.81 Aligned_cols=67 Identities=28% Similarity=0.320 Sum_probs=57.7
Q ss_pred CccccccccCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCccc
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDY 68 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~f 68 (255)
|++++.++.|..|+.++|+| |+++ .+|+|||||+||+|+|.|++++||+|++|||+++.. +.+|.+|
T Consensus 314 ~l~~~~~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 314 MIMRGLKLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHHHHhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 45778888887777777777 5555 899999999999999999999999999999999874 8888776
No 57
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.55 E-value=5.1e-15 Score=130.59 Aligned_cols=57 Identities=30% Similarity=0.310 Sum_probs=53.4
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCccc
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDY 68 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~f 68 (255)
.|+|+.+++|||++++|+|||||+||+|+|.|+++.||+|++|||++.. +..+|.+|
T Consensus 262 ~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 262 LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 6789999999999999999999999999999999999999999999987 57788776
No 58
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=9.3e-14 Score=130.91 Aligned_cols=168 Identities=13% Similarity=0.135 Sum_probs=131.7
Q ss_pred ccceeeeeeE--eeecCccccccCCCccCHHHHHhh-------------------------cChhHHHHHHhccCCCCCc
Q psy11866 14 WVRYFLHSGH--LTIAGCKMSKSLKNFITIQDALNK-------------------------HTARQLRLAFLLHAWHQTL 66 (255)
Q Consensus 14 ~~~~~~h~g~--l~~~g~KMSKSlGN~i~~~d~l~~-------------------------~~~d~lR~~ll~~~y~~~~ 66 (255)
++..+.|.++ |..+|+||||..||+|++.|+++. .|.+++||++|+.+..+++
T Consensus 353 ~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~ 432 (562)
T PRK12451 353 WVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNI 432 (562)
T ss_pred cccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCc
Confidence 4444555555 777999999999999999999996 6689999999999999999
Q ss_pred ccChhHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy11866 67 DYSDNTMEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSI 145 (255)
Q Consensus 67 ~fs~~~l~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l 145 (255)
+|+++.+.... +.-..++..+.|+.+++++........ ...-.++.+..+...+..+++.+.+++ ++++++.++..+
T Consensus 433 ~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~-~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl 510 (562)
T PRK12451 433 EFSLENMLKFEGETGPYVQYTHARACSILRKESVEFETC-TFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYV 510 (562)
T ss_pred eECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCcccc-ccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 99999976554 334578888889988887753110100 111114667889999999999999999 999999999999
Q ss_pred HHHHHHHhhhhhc---CCCH-------HHHHHHHHHHHHhhhcccccc
Q psy11866 146 RDCISQVNIYLRG---TPNQ-------LLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 146 ~~l~~~~N~~~~~---~~~~-------~~l~~~~~~~~~~~~ilGi~~ 183 (255)
+++++.+|.|++. ..+. .++.++...+...|++|||..
T Consensus 511 ~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~ 558 (562)
T PRK12451 511 LDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEA 558 (562)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999976 1111 245678888889999999964
No 59
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.52 E-value=4.4e-15 Score=130.66 Aligned_cols=57 Identities=30% Similarity=0.295 Sum_probs=52.8
Q ss_pred cccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccCh
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSD 70 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~ 70 (255)
++++.+++||||+++|+|||||+||+|+|.|++++||+|++|||+++.+. ++.+|++
T Consensus 258 ~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 258 EPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred cCcHHheecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 56878889999999999999999999999999999999999999998866 8888875
No 60
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.50 E-value=4e-14 Score=131.09 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=56.8
Q ss_pred ccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHHHH
Q psy11866 14 WVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEKLLNEFF 87 (255)
Q Consensus 14 ~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~~l~~~~ 87 (255)
++-.|+| |..+|+|||||+||+|++.|+++.+++|++||++++.+|+++++|+.+.+ ++.....++.+.+
T Consensus 261 ~~ye~v~---L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~ 330 (515)
T TIGR00467 261 VQYEWIS---LKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFY 330 (515)
T ss_pred cEEEEEE---EcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHH
Confidence 4555555 55567899999999999999999999999999999999999999999988 6664333444433
No 61
>KOG0435|consensus
Probab=99.46 E-value=9.3e-13 Score=121.47 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=94.8
Q ss_pred ecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C-C
Q psy11866 26 IAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFP-A-T 102 (255)
Q Consensus 26 ~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~-~-~ 102 (255)
+--+|||||++|+|+|.+++.+||+|++|+++|.. +++++++|++..+....++ ++++++.+.+++.....+ . .
T Consensus 613 ~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rw---l~riw~l~~~~~~ar~~g~~~d 689 (876)
T KOG0435|consen 613 VTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRW---LQRIWALVSQILQARDDGKAKD 689 (876)
T ss_pred eeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHH---HHHHHHHHHHHHHHHhcCCccc
Confidence 33689999999999999999999999999999976 7999999999999988654 455555555544321111 0 1
Q ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhh
Q psy11866 103 TVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIY 155 (255)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~ 155 (255)
.....+....+.+.+.+..+.++..+.+++...+.+..|++.+|.|....-..
T Consensus 690 ~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a 742 (876)
T KOG0435|consen 690 LKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKA 742 (876)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111222334567888899999999999999999999999999987644333
No 62
>KOG1247|consensus
Probab=99.40 E-value=1.6e-12 Score=114.04 Aligned_cols=143 Identities=22% Similarity=0.169 Sum_probs=114.2
Q ss_pred CCcccceeeeeeEeeecCccccccCCCccCHHHHHh-hcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHH---
Q psy11866 11 NDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNE--- 85 (255)
Q Consensus 11 ~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~--- 85 (255)
+.+.++++..+.+|+.+..|.|||+|-.|.-.++-+ ..++++.|||||+. +..+|..|||+.+....|.+ ++++
T Consensus 324 n~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nse-Ll~NLGN 402 (567)
T KOG1247|consen 324 NYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSE-LLNNLGN 402 (567)
T ss_pred CchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHH-HHHHHHH
Confidence 356788888899999999999999999999888876 47999999999998 57789999999998877743 5554
Q ss_pred HHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 86 FFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
|+|++..++..... +.+|.. .....+..+++.+.++.....++| +.-....|+..+|++.+..|.|++.
T Consensus 403 FvNR~l~fv~~~~~--g~Vp~~-~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~~m~is~~GNqylQ~ 471 (567)
T KOG1247|consen 403 FVNRVLKFVAAKYN--GVVPEM-ELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKTAMEISRRGNQYLQE 471 (567)
T ss_pred HHHHHHHHHHHhhC--Ccccce-eecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 55554444433222 233333 223347788999999999999999 9999999999999999999999986
No 63
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.37 E-value=1.1e-12 Score=122.01 Aligned_cols=70 Identities=24% Similarity=0.198 Sum_probs=56.7
Q ss_pred cccccCCCcccceeeeeeEeeec-CccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHH
Q psy11866 5 FQAYFNNDSWVRYFLHSGHLTIA-GCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVT 78 (255)
Q Consensus 5 s~a~~~~~~~~~~~~h~g~l~~~-g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~ 78 (255)
++..+|.. .|.. +|+||++.+ |+|||||+||+|+|.|+++.|+||++|||++. .++.++++|+. +..+..
T Consensus 256 ~~~ilg~~-~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~d 327 (510)
T PRK00750 256 AREILGGE-PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVD 327 (510)
T ss_pred HHHHcCCC-CCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHH
Confidence 34244533 3433 788999998 99999999999999999999999999987774 57999999998 666654
No 64
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.37 E-value=1.5e-12 Score=115.46 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=54.5
Q ss_pred cCCCcccceeeeeeEeeecCc-cccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHHHHH
Q psy11866 9 FNNDSWVRYFLHSGHLTIAGC-KMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTMEMA 76 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l~~~g~-KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a 76 (255)
+|. +.|.. +.+||++.+|. |||||+||+|+|.|+|+.+++|++|||+++.+ ..++++|+.+.....
T Consensus 255 lg~-~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~~~~ 322 (353)
T cd00674 255 FGG-EPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDILRLY 322 (353)
T ss_pred hCC-CCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHHHHH
Confidence 443 33544 66699988876 99999999999999999999999999999987 778999998654443
No 65
>KOG0437|consensus
Probab=99.36 E-value=5e-12 Score=117.70 Aligned_cols=135 Identities=22% Similarity=0.246 Sum_probs=96.1
Q ss_pred ccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHHHHHHHHHHHHH
Q psy11866 6 QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTMEMAVTYEKLLN 84 (255)
Q Consensus 6 ~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a~~~~~~l~ 84 (255)
.|++....||+.+-.||||.+|++|||||.|||.|+.+.+++||+|+.|+.|+-.+ --.|-||.+..-..+. . ++-
T Consensus 686 vAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnAaI--L-RLy 762 (1080)
T KOG0437|consen 686 VALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAAI--L-RLY 762 (1080)
T ss_pred hhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccHHH--H-HHH
Confidence 46677788999999999999999999999999999999999999999999877664 5578899877665554 1 222
Q ss_pred HHHHHHHHHHhhc--cCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHH
Q psy11866 85 EFFLNVKDHIRNL--KFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDS-IRDCIS 150 (255)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~-l~~l~~ 150 (255)
++..-+..++... ... ++ .. ...|+.+.+.++..+..-.+++ ++.++..|+.. ++++..
T Consensus 763 t~~ew~eEm~~~~s~Lrt-Gp---~~--~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~Gfyd~qa 824 (1080)
T KOG0437|consen 763 TYVEWIEEMCENRSSLRT-GP---AS--TFADRVFENEMNALIAKTERAY-EDTLFKDALKYGFYDLQA 824 (1080)
T ss_pred HHHHHHHHHHhhHHhhcc-Cc---hh--hHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhhHHHHH
Confidence 2222222222110 000 10 11 1246667777788888888888 88999999965 666653
No 66
>PLN02286 arginine-tRNA ligase
Probab=99.35 E-value=2.3e-11 Score=114.95 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=126.2
Q ss_pred eeeEee-ecCccccccCCCccCHHHHHhh-----------------------------cChhHHHHHHhccCCCCCcccC
Q psy11866 20 HSGHLT-IAGCKMSKSLKNFITIQDALNK-----------------------------HTARQLRLAFLLHAWHQTLDYS 69 (255)
Q Consensus 20 h~g~l~-~~g~KMSKSlGN~i~~~d~l~~-----------------------------~~~d~lR~~ll~~~y~~~~~fs 69 (255)
..|+|+ .+|+||||..||+|+++|++++ .|.+++||++|+.+..++++|+
T Consensus 367 ~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd 446 (576)
T PLN02286 367 GFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFS 446 (576)
T ss_pred eeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccC
Confidence 345575 6788999999999999999993 4679999999999999999999
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCc---cccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy11866 70 DNTMEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTV---SSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSI 145 (255)
Q Consensus 70 ~~~l~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l 145 (255)
++.+.... +.--.++..+.|+.+++++........ ....-.++.+..|+..+..++..+..+. +++..+..+..+
T Consensus 447 ~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl 525 (576)
T PLN02286 447 FDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLCEYL 525 (576)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHH
Confidence 99976544 233467888889988887653210000 0111124678889999999999999998 999999999999
Q ss_pred HHHHHHHhhhhhc----C-CCH----HHHHHHHHHHHHhhhccccccC
Q psy11866 146 RDCISQVNIYLRG----T-PNQ----LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 146 ~~l~~~~N~~~~~----~-~~~----~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
+++++..|.|.+. . ++. .++..+...+...|++|||...
T Consensus 526 ~~LA~~F~~fY~~~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 526 YNLSEKFTKFYSNCKVNGSEEETSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHhcCccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999864 1 111 3456788888899999999643
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.4e-11 Score=112.20 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=133.4
Q ss_pred ccc-ceeeeeeEeee---cCccccccCCCccCHHHHHhhcC----------------------hhHHHHHHhccCCCCCc
Q psy11866 13 SWV-RYFLHSGHLTI---AGCKMSKSLKNFITIQDALNKHT----------------------ARQLRLAFLLHAWHQTL 66 (255)
Q Consensus 13 ~~~-~~~~h~g~l~~---~g~KMSKSlGN~i~~~d~l~~~~----------------------~d~lR~~ll~~~y~~~~ 66 (255)
.|+ ...+|.++-++ +|.||||-.||+|+++|+++.-+ .+++||++++.+..+++
T Consensus 362 ~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~ 441 (577)
T COG0018 362 GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDY 441 (577)
T ss_pred CCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCc
Confidence 345 57889888433 46799999999999999999888 99999999999999999
Q ss_pred ccChhHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCccc---cccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q psy11866 67 DYSDNTMEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTVSS---FEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL 142 (255)
Q Consensus 67 ~fs~~~l~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al 142 (255)
+|+++.+.... |....++..+.|+.+++++.......... ..-..+.+..|...+..++..+..+. +++.++...
T Consensus 442 ~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la 520 (577)
T COG0018 442 VFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLA 520 (577)
T ss_pred EeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHH
Confidence 99999987655 34457788888999888765422011100 01123447889999999999999997 999999999
Q ss_pred HHHHHHHHHHhhhhhc-----CCCH-------HHHHHHHHHHHHhhhccccccC
Q psy11866 143 DSIRDCISQVNIYLRG-----TPNQ-------LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 143 ~~l~~l~~~~N~~~~~-----~~~~-------~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
..+++|....|.|.+. ..+. .++..+...+...|++|||...
T Consensus 521 ~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 521 NYLYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999876 1121 3466788888999999999643
No 68
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.95 E-value=1.8e-09 Score=72.28 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=45.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHhhhccccccCC
Q psy11866 127 NVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDV 185 (255)
Q Consensus 127 ~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~~~~l~~~~~~~~~~~~ilGi~~~~ 185 (255)
+|.++|+||||||.|++.|+++++.+|+.... .+...+..+...+.++.+||||...+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~-~~~~~~~~~~~~l~~~~~vLGl~~~~ 58 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALES-NDKEDLEALAAALRKLLDVLGLLQED 58 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHC-C-HHHHHHHHHHHHHHHHCCT-S-S-
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 47899999999999999999999999994333 35566777888999999999997654
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.86 E-value=3.2e-09 Score=93.68 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=35.5
Q ss_pred cccCCCcccceeeeeeEeeecCc-cccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChh-HHHHHH
Q psy11866 7 AYFNNDSWVRYFLHSGHLTIAGC-KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDN-TMEMAV 77 (255)
Q Consensus 7 a~~~~~~~~~~~~h~g~l~~~g~-KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~-~l~~a~ 77 (255)
-.+|..| | .-+.-+|++++|. |||||+||++||.|+|+-+.|++|||+++.+.+.+..+|+.+ .+....
T Consensus 260 ~i~g~~p-P-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~~~~~~~~~i~~~~ 330 (360)
T PF01921_consen 260 EILGYEP-P-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKAKDFSFDLVIPRLY 330 (360)
T ss_dssp HCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS-EEE--STTHHHHH
T ss_pred HHhCCCC-C-CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcceEeccCcchHHHH
Confidence 4566544 4 3466789888877 999999999999999999999999999999888888888887 665544
No 70
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.71 E-value=4.4e-08 Score=63.77 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHhhhcccc
Q psy11866 128 VHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGC 181 (255)
Q Consensus 128 ~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~~~~l~~~~~~~~~~~~ilGi 181 (255)
|.++|+||||||.|++.++++++.+|.+++.......+..+...+..++++||+
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~~~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCC
Confidence 678999999999999999999999999885432233456677788888899997
No 71
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-08 Score=92.04 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=54.1
Q ss_pred cccCCCcccceeeeeeEeeecC-ccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhH-HHHHHH
Q psy11866 7 AYFNNDSWVRYFLHSGHLTIAG-CKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNT-MEMAVT 78 (255)
Q Consensus 7 a~~~~~~~~~~~~h~g~l~~~g-~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~-l~~a~~ 78 (255)
..+|..|... +.-.|++++| +|||||+||+|+++|+++-+.|+.+||++..+.+.+-.+|+.+. |...+.
T Consensus 255 ei~g~~pP~~--~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~lvD 326 (521)
T COG1384 255 EIFGYEPPVP--FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILKLVD 326 (521)
T ss_pred HhcCCCCCCC--CceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCcceecCCCCChhHHHH
Confidence 3566444332 4457887777 99999999999999999999999999999888777767777766 555443
No 72
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.54 E-value=3.6e-06 Score=66.61 Aligned_cols=136 Identities=8% Similarity=0.036 Sum_probs=99.7
Q ss_pred hcChhHHHHHHhccCCCCCcccChhHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCc--cccccC-CHHHHHHHHHHH
Q psy11866 47 KHTARQLRLAFLLHAWHQTLDYSDNTMEMAVT-YEKLLNEFFLNVKDHIRNLKFPATTV--SSFEKW-TQADLELSTRFI 122 (255)
Q Consensus 47 ~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~l~ 122 (255)
..|.+++||++|+....++++|+++.+..... ..-.+...+.|+.+++++........ .....+ ++.+..+...+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 45789999999999999999999998765432 22356667788888877643100100 001111 346778888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc----CCC-------HHHHHHHHHHHHHhhhcccccc
Q psy11866 123 QTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG----TPN-------QLLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 123 ~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~----~~~-------~~~l~~~~~~~~~~~~ilGi~~ 183 (255)
.+++.+..++ ...++..++..+.++...+|.|++. ..+ ..++..+...+...++++||..
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~ 152 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEA 152 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8888888887 8899999999999999999999875 112 1356778888899999999864
No 73
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.25 E-value=3.2e-05 Score=57.51 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=57.8
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11866 68 YSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRD 147 (255)
Q Consensus 68 fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~ 147 (255)
|+++.+....| .++++++.+........ +.. ........|.++.+.+.++.+++.++| ++|++++|++.+++
T Consensus 1 w~~~~~~~~~n---~l~R~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~ 72 (117)
T cd07958 1 WSDSGVEGAYR---FLNRVWRLVTELAEALA---APA-AAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALME 72 (117)
T ss_pred CCcchhHHHHH---HHHHHHHHHHHHHhhcc---ccc-cccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHH
Confidence 56777777754 44444444433221100 000 001234467889999999999999999 99999999999999
Q ss_pred HHHHHhhhhhc
Q psy11866 148 CISQVNIYLRG 158 (255)
Q Consensus 148 l~~~~N~~~~~ 158 (255)
++..+|+|++.
T Consensus 73 ~~~~~n~~~~~ 83 (117)
T cd07958 73 LVNALYKYKKK 83 (117)
T ss_pred HHHHHHHhhcc
Confidence 99999999876
No 74
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.10 E-value=5.1e-05 Score=57.42 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-CC-------CHHHHHHHHHHHHHhhhcccc
Q psy11866 110 WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TP-------NQLLLRDIGAYVTKILTVFGC 181 (255)
Q Consensus 110 ~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-~~-------~~~~l~~~~~~~~~~~~ilGi 181 (255)
..+.+.++...+.++.+.+.++| ++|+++.|++.++++++.+|+|++. +| +...+..+...+.+.++.+.+
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999 8999999999999999999999986 22 222233444455555555555
Q ss_pred cc
Q psy11866 182 IG 183 (255)
Q Consensus 182 ~~ 183 (255)
..
T Consensus 113 lL 114 (129)
T cd07957 113 LL 114 (129)
T ss_pred Hh
Confidence 43
No 75
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.02 E-value=0.00019 Score=53.36 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHhhhhhc
Q psy11866 110 WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDCISQVNIYLRG 158 (255)
Q Consensus 110 ~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l-~~l~~~~N~~~~~ 158 (255)
....|+++...+..+.+++.++| ++|+++.|++.+ +++.+.+|+|++.
T Consensus 33 ~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~~~~~~~~~~~~Y~~~ 81 (117)
T cd07959 33 LTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKEGLYELQNDLDWYRER 81 (117)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999 899999999996 9999999999875
No 76
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.96 E-value=1.3e-05 Score=75.29 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=55.9
Q ss_pred CcccceeeeeeEeeecCccccccC-------C--------CccCHHHHHhh-cChhHHHHHHhccCCC-CCcccChhHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSL-------K--------NFITIQDALNK-HTARQLRLAFLLHAWH-QTLDYSDNTME 74 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSl-------G--------N~i~~~d~l~~-~~~d~lR~~ll~~~y~-~~~~fs~~~l~ 74 (255)
.+.| +|+|.+.|+.+|.|||||. | +..|+..+... |.|+++|.|++..+++ ++..|+++.|.
T Consensus 321 ~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~ 399 (567)
T PRK04156 321 WEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLY 399 (567)
T ss_pred CCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHH
Confidence 3445 6899999999999999998 5 45788888775 9999999999988887 89999999998
Q ss_pred HHHH
Q psy11866 75 MAVT 78 (255)
Q Consensus 75 ~a~~ 78 (255)
...+
T Consensus 400 ~~nr 403 (567)
T PRK04156 400 AINR 403 (567)
T ss_pred HHHH
Confidence 7653
No 77
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=97.90 E-value=0.00042 Score=53.27 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=72.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-ccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy11866 68 YSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVS-SFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR 146 (255)
Q Consensus 68 fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~ 146 (255)
||++.+..+.+ .+.++|+.+..+....... ...+ ........+.++...+.++.+.+.++| +.+++.+|+..++
T Consensus 1 ~~~~~~~~~~~---~l~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~ 75 (135)
T cd07962 1 FDEKRVEGGRN---FCNKLWNAARFVLMNLEDD-DEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATALY 75 (135)
T ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHHccccc-CccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence 67788877764 4555555544332211100 0000 012223457788899999999999999 9999999999999
Q ss_pred HHHH--HHhhhhhc-CC-----CHHHHHHHHHHHHHhhhccccccC
Q psy11866 147 DCIS--QVNIYLRG-TP-----NQLLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 147 ~l~~--~~N~~~~~-~~-----~~~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
+++. .+|+|++. .| +......+...+.++++++.+...
T Consensus 76 ~~~~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~ 121 (135)
T cd07962 76 EFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLH 121 (135)
T ss_pred HHHHHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHC
Confidence 9997 79999986 22 222244455566667777766543
No 78
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.84 E-value=9.7e-05 Score=51.80 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHH-hhhhhcCCCHHHHHHHHHHHHHhhhcccc
Q psy11866 123 QTKNNVHAALCDNMDTRSALDSIRDCISQV-NIYLRGTPNQLLLRDIGAYVTKILTVFGC 181 (255)
Q Consensus 123 ~~~~~~~~al~dd~~~~~al~~l~~l~~~~-N~~~~~~~~~~~l~~~~~~~~~~~~ilGi 181 (255)
.+.++|.++|+||||||.|++.|+++++.+ |.--. + +.+.....+.+..+||+
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~~~~---~---~~~~~~~~~~~~~~~~~ 81 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREALSRGGT---D---PDAPALVRTAVDALLGV 81 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhcCCC---C---cccHHHHHHHHHHHcCC
Confidence 346789999999999999999999999876 54311 1 12233344556667774
No 79
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=97.77 E-value=1.4e-05 Score=71.69 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=41.7
Q ss_pred cccceeeeeeE--e-eecCc-cccccCCCccCHHHHHh--------------------------hcChhHHHHHHhccCC
Q psy11866 13 SWVRYFLHSGH--L-TIAGC-KMSKSLKNFITIQDALN--------------------------KHTARQLRLAFLLHAW 62 (255)
Q Consensus 13 ~~~~~~~h~g~--l-~~~g~-KMSKSlGN~i~~~d~l~--------------------------~~~~d~lR~~ll~~~y 62 (255)
|....+.|.++ + ..+|+ |||+..||+|++.|+|+ ..|..++||+.|+...
T Consensus 267 ~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~ 346 (354)
T PF00750_consen 267 PEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKR 346 (354)
T ss_dssp HHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-T
T ss_pred CCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccC
Confidence 44455667665 3 44776 89999999999999999 4667778888888777
Q ss_pred CCCcccCh
Q psy11866 63 HQTLDYSD 70 (255)
Q Consensus 63 ~~~~~fs~ 70 (255)
.+++.|+|
T Consensus 347 ~~~~~Fdw 354 (354)
T PF00750_consen 347 NKDYVFDW 354 (354)
T ss_dssp TS-EEEEC
T ss_pred CCCceecC
Confidence 77777765
No 80
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.70 E-value=0.0011 Score=48.73 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 111 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 111 ~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+.++...+..+.+.+.++| ++|++..|++.+++++...|+|++.
T Consensus 38 ~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y~~~ 84 (117)
T cd07375 38 EEADRELLARLQEFIKRTTNAL-EALDPTTAVQELFKFTNELNWYLDE 84 (117)
T ss_pred CHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccHHHHH
Confidence 3457899999999999999999 8999999999999999999999974
No 81
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=97.57 E-value=0.0022 Score=51.76 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--HHhhhhhc
Q psy11866 110 WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLRG 158 (255)
Q Consensus 110 ~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~--~~N~~~~~ 158 (255)
....|++++..+..+...+.++| ++|++..|++.+++++. .+|.|++.
T Consensus 42 ~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~i~~f~~~~l~n~Yi~~ 91 (180)
T cd07960 42 LLELDRYALHRLNELIKEVREAY-ENYEFHKVYQALNNFCTVDLSAFYLDI 91 (180)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999 89999999999999995 78999986
No 82
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=97.18 E-value=0.014 Score=47.22 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHh--hc--cCCCCCc-cccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q psy11866 68 YSDNTMEMAVTYEKLLNEFFLNVKDHIR--NL--KFPATTV-SSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL 142 (255)
Q Consensus 68 fs~~~l~~a~~~~~~l~~~~~~~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al 142 (255)
||++.++.+.+ +.++++||.++.++. .. ..+ ... .........|++++..+.++...+.++| +.|++..|+
T Consensus 1 ~s~~~v~~~~~--~f~~KlwN~~rf~l~~~~~~~~~~-~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREVVR--KVLLPLWNAYRFFVTYANLDGFDP-GKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAV 76 (183)
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCC-CccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence 67888888764 245555555443321 11 111 000 0112345678999999999999999999 899999999
Q ss_pred HHHHHHHHH-Hhhhhhc
Q psy11866 143 DSIRDCISQ-VNIYLRG 158 (255)
Q Consensus 143 ~~l~~l~~~-~N~~~~~ 158 (255)
+.++.++.. .+.|++.
T Consensus 77 ~~l~~f~~~~~~~Y~e~ 93 (183)
T cd07961 77 RALLEFIDELTNWYIRR 93 (183)
T ss_pred HHHHHHHHHhhhhHhhh
Confidence 999999974 3788764
No 83
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=96.86 E-value=0.015 Score=43.34 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhccCCCCC--cccccc-CCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc----
Q psy11866 86 FFLNVKDHIRNLKFPATT--VSSFEK-WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG---- 158 (255)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~---- 158 (255)
.+.|+.+++++....... .+.... .++.+..+...+..+...+..+. .+++++..+..++++...+|.|++.
T Consensus 4 a~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~yL~~La~~f~~fy~~~~I~ 82 (119)
T PF05746_consen 4 AYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLEPHKLCDYLYELAQAFNSFYDNVRIL 82 (119)
T ss_dssp HHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT-CHHHHHHHHHHHHHHHHHHHHS-ST
T ss_pred HHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345666666654422000 001111 24567888899999999999988 9999999999999999999999976
Q ss_pred CC--C------HHHHHHHHHHHHHhhhcccccc
Q psy11866 159 TP--N------QLLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 159 ~~--~------~~~l~~~~~~~~~~~~ilGi~~ 183 (255)
.. . -.++..+...+..++++|||..
T Consensus 83 ~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~ 115 (119)
T PF05746_consen 83 DEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEP 115 (119)
T ss_dssp TSTTCHH-HHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 11 1 1346778888899999999964
No 84
>KOG1195|consensus
Probab=96.66 E-value=0.031 Score=51.46 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=108.6
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhh----------------------------cChhHHHHHHhccCCC
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK----------------------------HTARQLRLAFLLHAWH 63 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~----------------------------~~~d~lR~~ll~~~y~ 63 (255)
..|+..+-|..+=.+ .=||.-.|+++...|++++ .|.-++..-.+...-.
T Consensus 351 ~~~a~~~qHV~~G~v--~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~ 428 (567)
T KOG1195|consen 351 FDWAKKLQHVNFGRV--QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRI 428 (567)
T ss_pred chhhhhcceeccccc--ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhc
Confidence 357777766655433 4599999999999988872 3444555555555455
Q ss_pred CCcccChhHHHHHHH-HHHHHHHHHHHHHHHHhhccCC-CCCcc--ccccCC-HHHHHHHHHHHHHHHHHHHHHhccCCH
Q psy11866 64 QTLDYSDNTMEMAVT-YEKLLNEFFLNVKDHIRNLKFP-ATTVS--SFEKWT-QADLELSTRFIQTKNNVHAALCDNMDT 138 (255)
Q Consensus 64 ~~~~fs~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~-~~~~~l~~~l~~~~~~~~~al~dd~~~ 138 (255)
++..|+|+.+-...- +.-.++....++..+.++...- .+... ....++ +.-..+...+..+++.+..++ ++++.
T Consensus 429 s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~ 507 (567)
T KOG1195|consen 429 SNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEP 507 (567)
T ss_pred ccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-Hhhcc
Confidence 667788877755432 2224555556666655443211 00000 001111 122346667788888899998 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhc-----CCCH------HHHHHHHHHHHHhhhcccccc
Q psy11866 139 RSALDSIRDCISQVNIYLRG-----TPNQ------LLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 139 ~~al~~l~~l~~~~N~~~~~-----~~~~------~~l~~~~~~~~~~~~ilGi~~ 183 (255)
...+..++.++..++..... .+.+ .+..++...+...|++|||.+
T Consensus 508 ~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitP 563 (567)
T KOG1195|consen 508 CTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARLLLFSAVRQVLNNGMRLLGITP 563 (567)
T ss_pred hhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHHHHHHHHHHHHHhHHHHhCCCc
Confidence 99999999999988877654 2221 346778888999999999964
No 85
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=96.53 E-value=0.016 Score=45.02 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-H-HHhhhhhc
Q psy11866 114 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI-S-QVNIYLRG 158 (255)
Q Consensus 114 ~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~-~-~~N~~~~~ 158 (255)
|+++++.+..+.+.+.++| ++|++..|+..++.++ . .+|+|++.
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yl~~ 46 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKEIMNFIWNDLSNWYLEL 46 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999 8999999999999974 4 56999975
No 86
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.51 E-value=0.0094 Score=50.09 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=38.8
Q ss_pred cccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCC
Q psy11866 13 SWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQ 64 (255)
Q Consensus 13 ~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~ 64 (255)
+.|. +.|.+.+ ..+|+|||||.|+ +++.++.+ +|.|++++-|+..-.+..
T Consensus 136 ~~P~-~~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~~~ 187 (230)
T cd00418 136 EPPR-FYHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGWSK 187 (230)
T ss_pred CCCe-EEEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCCCC
Confidence 5565 5777876 4567999999998 78888765 599999999988665543
No 87
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.48 E-value=0.0063 Score=51.46 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=38.7
Q ss_pred CcccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC
Q psy11866 12 DSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH 63 (255)
Q Consensus 12 ~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~ 63 (255)
.|-|.+ .|.+.+ ..+|.||||+.|+ .++..+.+ ++.|++++.|++.....
T Consensus 144 ~~~p~~-~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~ 195 (239)
T cd00808 144 WEPPKF-AHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWS 195 (239)
T ss_pred CCCCce-EeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 345654 566664 8899999999999 68888765 58999999998875543
No 88
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.37 E-value=0.028 Score=52.33 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=31.9
Q ss_pred cccceeeeeeE-eeecCccccccCCCccCHHHHHhh-cChhHHHHHHh
Q psy11866 13 SWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFL 58 (255)
Q Consensus 13 ~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll 58 (255)
+-| .+.|..+ ++.+|.||||..| .+++.++++. |.|++++-|+.
T Consensus 224 ~~p-~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~ 269 (470)
T TIGR00464 224 KIP-VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLA 269 (470)
T ss_pred CCC-eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHH
Confidence 334 5677777 5679999999999 8999999885 45554444443
No 89
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=95.29 E-value=0.04 Score=46.58 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=46.7
Q ss_pred cccceeeeeeEeeecCccccccCCC------c---------cCHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHHH
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSLKN------F---------ITIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTMEM 75 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSlGN------~---------i~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~~ 75 (255)
+.|.+ .|.+.++.+|+||||+.+- . .++..+.+ +|.|++++-|+...++ .++..++.+.+..
T Consensus 150 ~~P~~-~H~pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 150 EYPET-IHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCCcE-EeeeeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 45654 5999999999999999842 1 34555544 6899999988877664 3567888887765
Q ss_pred HH
Q psy11866 76 AV 77 (255)
Q Consensus 76 a~ 77 (255)
..
T Consensus 229 ~~ 230 (240)
T cd09287 229 IN 230 (240)
T ss_pred HH
Confidence 43
No 90
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.13 E-value=0.023 Score=49.01 Aligned_cols=39 Identities=26% Similarity=0.113 Sum_probs=25.8
Q ss_pred eeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 18 FLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 18 ~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
-+|+..| ..+|+|||||.+|.++ ..+ .-+|+.++=.+..
T Consensus 182 ~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 182 GLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRN 221 (269)
T ss_pred EEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHc
Confidence 3566665 6899999999999884 222 2356555554443
No 91
>KOG4426|consensus
Probab=95.04 E-value=0.62 Score=42.50 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred cceeeeeeE---eeecCccccccCCCccCHHHHHhh-----------------cChh------------HHHHHHhccCC
Q psy11866 15 VRYFLHSGH---LTIAGCKMSKSLKNFITIQDALNK-----------------HTAR------------QLRLAFLLHAW 62 (255)
Q Consensus 15 ~~~~~h~g~---l~~~g~KMSKSlGN~i~~~d~l~~-----------------~~~d------------~lR~~ll~~~y 62 (255)
...+-|.|| |--+|+|.-...|.+|-+.|+|++ ++|+ .+.|.=|++.-
T Consensus 429 ~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR 508 (656)
T KOG4426|consen 429 YPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNR 508 (656)
T ss_pred ccceeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhcccc
Confidence 345789998 344778998888999998888871 2222 26666666666
Q ss_pred CCCcccChhHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCc-------cccccCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy11866 63 HQTLDYSDNTMEMAV-TYEKLLNEFFLNVKDHIRNLKFPATTV-------SSFEKWTQADLELSTRFIQTKNNVHAALCD 134 (255)
Q Consensus 63 ~~~~~fs~~~l~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~al~d 134 (255)
-++.-||.+.|.+-+ |..-.+-..+.++..+.++........ +...-..+.+..+-..+-.+.+.+..++ +
T Consensus 509 ~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~ 587 (656)
T KOG4426|consen 509 ITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-D 587 (656)
T ss_pred ccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-H
Confidence 678889988876532 211122234556666665433210000 0011113446666667777788888887 8
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhc----C-C--------C--H-HHHHHHHHHHHHhhhccccc
Q psy11866 135 NMDTRSALDSIRDCISQVNIYLRG----T-P--------N--Q-LLLRDIGAYVTKILTVFGCI 182 (255)
Q Consensus 135 d~~~~~al~~l~~l~~~~N~~~~~----~-~--------~--~-~~l~~~~~~~~~~~~ilGi~ 182 (255)
++=.+..+..++++....-.|.+. . + + . .+-.+.+...+.++.+|||.
T Consensus 588 ~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~ 651 (656)
T KOG4426|consen 588 SLFLHVLCDYLYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIK 651 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCCc
Confidence 888999999999999877666654 1 1 1 1 12245566677889999985
No 92
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=94.87 E-value=0.36 Score=36.03 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-----CCCH-------HHHHHHHHHHHHhhhc
Q psy11866 111 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-----TPNQ-------LLLRDIGAYVTKILTV 178 (255)
Q Consensus 111 ~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-----~~~~-------~~l~~~~~~~~~~~~i 178 (255)
++.+..+...+..+.+.+..++ .+.++..++..+.++...+|.|++. .++. .++..+...+..++++
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~l 113 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAA-ETLEPHRLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRL 113 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888887 8889999999999999999999975 2212 2466777788889999
Q ss_pred ccccc
Q psy11866 179 FGCIG 183 (255)
Q Consensus 179 lGi~~ 183 (255)
+||..
T Consensus 114 lgi~~ 118 (122)
T smart00836 114 LGISA 118 (122)
T ss_pred cCCCc
Confidence 99864
No 93
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.73 E-value=0.035 Score=48.03 Aligned_cols=43 Identities=9% Similarity=-0.033 Sum_probs=24.7
Q ss_pred cceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 15 VRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 15 ~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
|..+.+.-....+|.|||||.||.++...+. -+|+.++=++.+
T Consensus 183 p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~--dsp~~i~~ki~~ 225 (273)
T cd00395 183 AEGLTIPLVTKLDGPKFGKSESGPKWLDTEK--TSPYEFYQFWIN 225 (273)
T ss_pred CeEEeeccccCCCCCcCCCCCCCCccccccC--CCHHHHHHHHHc
Confidence 4344443234679999999999987543321 244444444443
No 94
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=94.70 E-value=0.052 Score=50.66 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=33.0
Q ss_pred eeeeeeEe-eecCccccccCCCccCHHHHHhh-cChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~ 59 (255)
.|.|..++ +.+|.||||..| .+++.++.+. |-|.++.-|+..
T Consensus 237 ~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 237 VFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred eEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 57887874 789999999999 7899999885 577666665554
No 95
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=94.48 E-value=0.1 Score=44.11 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=46.0
Q ss_pred cccceeeeeeEeeecCccccccCCC------cc---------CHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHHH
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSLKN------FI---------TIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTMEM 75 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSlGN------~i---------~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~~ 75 (255)
+.|++ .|.+|++.+|.|+||+.+- .+ ++..+-. +|.|++++=|++.-++ .++..|+++.|..
T Consensus 148 ~~P~~-~~~~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 148 YRPHQ-WEFSRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred CCCce-eEEEEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 45653 4668899999999999852 12 3444433 6899999999987765 4678899888865
Q ss_pred H
Q psy11866 76 A 76 (255)
Q Consensus 76 a 76 (255)
.
T Consensus 227 ~ 227 (238)
T cd00807 227 C 227 (238)
T ss_pred H
Confidence 4
No 96
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=94.41 E-value=0.1 Score=49.02 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=51.4
Q ss_pred cccceeeeeeEeeecCccccccC------CCcc---------CHHHHHh-hcChhHHHHHHhccC-CCCCcccChhHHHH
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSL------KNFI---------TIQDALN-KHTARQLRLAFLLHA-WHQTLDYSDNTMEM 75 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSl------GN~i---------~~~d~l~-~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~ 75 (255)
+-|.+ .|-+++...|.||||+. .+.| |+..+-. +|.|+++|=|++..+ -..+..++++.|..
T Consensus 230 ~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~ 308 (523)
T PLN03233 230 RRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWA 308 (523)
T ss_pred CCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHH
Confidence 45664 77899999999999997 4455 5777765 599999999999875 45678899999987
Q ss_pred HHH
Q psy11866 76 AVT 78 (255)
Q Consensus 76 a~~ 78 (255)
+.+
T Consensus 309 ~nR 311 (523)
T PLN03233 309 ENK 311 (523)
T ss_pred HHH
Confidence 653
No 97
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=94.35 E-value=0.016 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=16.9
Q ss_pred eeeEe-eecCccccccCCCccCHH
Q psy11866 20 HSGHL-TIAGCKMSKSLKNFITIQ 42 (255)
Q Consensus 20 h~g~l-~~~g~KMSKSlGN~i~~~ 42 (255)
|+..+ ..+|.|||||.+|.|.+.
T Consensus 191 ~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 191 EGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred ccccccCCCCCCCCCCCCCccccc
Confidence 44443 568899999999988543
No 98
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=94.13 E-value=0.11 Score=48.79 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=46.7
Q ss_pred cceeeeeeEeeecCccccccCCCc---------------cCHHHHHh-hcChhHHHHHHhccCCCCC-cccChhHHHHHH
Q psy11866 15 VRYFLHSGHLTIAGCKMSKSLKNF---------------ITIQDALN-KHTARQLRLAFLLHAWHQT-LDYSDNTMEMAV 77 (255)
Q Consensus 15 ~~~~~h~g~l~~~g~KMSKSlGN~---------------i~~~d~l~-~~~~d~lR~~ll~~~y~~~-~~fs~~~l~~a~ 77 (255)
|++| +-||+.++|.||||+.+.. .|+..+.. +|.|+++|=|++..++... ...++..+.+..
T Consensus 227 P~~~-~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~ 305 (522)
T TIGR00440 227 PAQY-EFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCI 305 (522)
T ss_pred CceE-EEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHH
Confidence 5443 7789999999999999874 48888776 6999999999998876533 334556666544
No 99
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.80 E-value=0.026 Score=51.08 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=22.0
Q ss_pred eeecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 24 LTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 24 l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
..++|+|||||.+|.|.+.| +++.++=-+..
T Consensus 258 ~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 258 PGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred cCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 35689999999999887655 55555554443
No 100
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=93.69 E-value=0.58 Score=41.67 Aligned_cols=19 Identities=53% Similarity=0.663 Sum_probs=14.9
Q ss_pred eecC-ccccccCCCccCHHH
Q psy11866 25 TIAG-CKMSKSLKNFITIQD 43 (255)
Q Consensus 25 ~~~g-~KMSKSlGN~i~~~d 43 (255)
.++| .|||||.+|.|.+.|
T Consensus 190 ~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 190 GLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred CCCCCCcCCCCCCCeeeeeC
Confidence 3466 899999999887655
No 101
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=93.43 E-value=0.38 Score=42.74 Aligned_cols=28 Identities=39% Similarity=0.465 Sum_probs=18.5
Q ss_pred ecCccccccCCC-ccCHHHHHhhcChhHHHHHHh
Q psy11866 26 IAGCKMSKSLKN-FITIQDALNKHTARQLRLAFL 58 (255)
Q Consensus 26 ~~g~KMSKSlGN-~i~~~d~l~~~~~d~lR~~ll 58 (255)
.+|+|||||.+| .|.+.| +++.++=-+.
T Consensus 188 l~~~KMSKS~~~s~I~L~D-----~~e~I~~KI~ 216 (328)
T TIGR00233 188 LSGKKMSKSDPNSAIFLTD-----TPKQIKKKIR 216 (328)
T ss_pred CCCCcCCCCCCCCeEeecC-----CHHHHHHHHH
Confidence 456899999997 776654 4555544333
No 102
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.03 E-value=0.029 Score=51.23 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=19.4
Q ss_pred eecCccccccCCCccCHHHHHhhcChhHHHHH
Q psy11866 25 TIAGCKMSKSLKNFITIQDALNKHTARQLRLA 56 (255)
Q Consensus 25 ~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ 56 (255)
-++|.|||||.+|.|.+.| +++.+|=-
T Consensus 197 gLdg~KMSKS~~n~I~L~D-----s~~~I~kK 223 (431)
T PRK12284 197 GLDGRKMSKSYDNTIPLFA-----PREELKKA 223 (431)
T ss_pred CCCCccccCCCCCEeeecC-----CHHHHHHH
Confidence 5678999999999986553 45555543
No 103
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=92.56 E-value=0.28 Score=46.33 Aligned_cols=60 Identities=17% Similarity=0.010 Sum_probs=48.1
Q ss_pred eeeeeEeeecCccccccCCC-------c--------cCHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHHHHH
Q psy11866 18 FLHSGHLTIAGCKMSKSLKN-------F--------ITIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTMEMAV 77 (255)
Q Consensus 18 ~~h~g~l~~~g~KMSKSlGN-------~--------i~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~~a~ 77 (255)
..+-|||.++|.||||+.+. + .|+..+.. +|.|+++|=|++..++ ..+..++++.|....
T Consensus 258 ~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 258 QYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred eEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 45779999999999999964 2 26887776 5999999999998764 456788888887765
No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=92.53 E-value=0.049 Score=49.85 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.7
Q ss_pred eeecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 24 LTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 24 l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
...+|.|||||.||.|++.|- ..+|..++=++++
T Consensus 224 ~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 224 EGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred cCCCCCccCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 367899999999999987763 4567776666664
No 105
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.06 E-value=0.06 Score=46.92 Aligned_cols=27 Identities=44% Similarity=0.332 Sum_probs=18.7
Q ss_pred eeeeeeEe-eecCc-cccccCCC-ccCHHH
Q psy11866 17 YFLHSGHL-TIAGC-KMSKSLKN-FITIQD 43 (255)
Q Consensus 17 ~~~h~g~l-~~~g~-KMSKSlGN-~i~~~d 43 (255)
+-+++.++ ..+|. |||||.+| .|.+.|
T Consensus 183 ~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 183 AGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred hheeeccccccCCccccCccCCccEEEEec
Confidence 34555554 57898 99999999 666544
No 106
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.03 E-value=0.053 Score=47.56 Aligned_cols=30 Identities=27% Similarity=0.186 Sum_probs=19.5
Q ss_pred cccceeeee--eEeeecC-ccccccCCC-ccCHH
Q psy11866 13 SWVRYFLHS--GHLTIAG-CKMSKSLKN-FITIQ 42 (255)
Q Consensus 13 ~~~~~~~h~--g~l~~~g-~KMSKSlGN-~i~~~ 42 (255)
+.|...+|- -..-++| .|||||.+| +|.+.
T Consensus 178 ~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 178 PLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred CCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 345444443 2346778 899999999 66543
No 107
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=91.93 E-value=0.083 Score=48.35 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=26.5
Q ss_pred eecCccccccCCCccCHHHHHhhcChhHHHHHHhcc
Q psy11866 25 TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60 (255)
Q Consensus 25 ~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~ 60 (255)
..+|+|||||.||.|++.|- +.+|..++=++++.
T Consensus 227 ~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~~ 260 (408)
T PRK05912 227 GLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMNI 260 (408)
T ss_pred CCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhcC
Confidence 56899999999999988762 45677777777653
No 108
>PLN02859 glutamine-tRNA ligase
Probab=91.91 E-value=0.28 Score=48.14 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=47.1
Q ss_pred eeeeeeEeeecCccccccCCCc---------------cCHHHHHh-hcChhHHHHHHhccCCCCC-c-ccChhHHHHH
Q psy11866 17 YFLHSGHLTIAGCKMSKSLKNF---------------ITIQDALN-KHTARQLRLAFLLHAWHQT-L-DYSDNTMEMA 76 (255)
Q Consensus 17 ~~~h~g~l~~~g~KMSKSlGN~---------------i~~~d~l~-~~~~d~lR~~ll~~~y~~~-~-~fs~~~l~~a 76 (255)
.+.|-+.|+++|.||||+.+.. .|+..+.. +|.|+++|=|++..++... . .|+++.|+..
T Consensus 486 ~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~ 563 (788)
T PLN02859 486 YVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHH 563 (788)
T ss_pred cEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhh
Confidence 4678889999999999999764 46777765 6999999999998776543 3 5888888443
No 109
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=91.70 E-value=0.41 Score=45.72 Aligned_cols=64 Identities=11% Similarity=-0.114 Sum_probs=48.2
Q ss_pred cccceeeeeeEeeecCccccccCCCc---------------cCHHHHH-hhcChhHHHHHHhccC-CCCCcccChhHHHH
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSLKNF---------------ITIQDAL-NKHTARQLRLAFLLHA-WHQTLDYSDNTMEM 75 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSlGN~---------------i~~~d~l-~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~ 75 (255)
+.| .+.|.+.++.+|.||||+.+.- .|+.-+. ..|.++++|=||...+ -+++..|+++.|..
T Consensus 272 ~~P-~~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~ 350 (601)
T PTZ00402 272 RKP-IVEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWY 350 (601)
T ss_pred CCc-eEEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 345 5778889999999999998751 1223222 3699999999999876 45788999999987
Q ss_pred HH
Q psy11866 76 AV 77 (255)
Q Consensus 76 a~ 77 (255)
..
T Consensus 351 ~n 352 (601)
T PTZ00402 351 FN 352 (601)
T ss_pred HH
Confidence 65
No 110
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=91.47 E-value=0.49 Score=44.48 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=44.1
Q ss_pred cCCCcccceeeeeeEee-ecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC--CCcccChhHHH
Q psy11866 9 FNNDSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH--QTLDYSDNTME 74 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~--~~~~fs~~~l~ 74 (255)
.| .+.| .+.|..++. .+|.||||..|. ..+.++.+ +|.|++++=|++.-+|. ..--||.+.+.
T Consensus 220 LG-~~~p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~ 286 (513)
T PRK14895 220 FG-YAVP-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAI 286 (513)
T ss_pred cC-CCCC-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHH
Confidence 35 3434 689999986 999999999998 46777665 69999999888854432 22235555443
No 111
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=91.39 E-value=0.53 Score=43.33 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=36.9
Q ss_pred eeeeeeE-eeecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCC
Q psy11866 17 YFLHSGH-LTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAW 62 (255)
Q Consensus 17 ~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y 62 (255)
.|.|.+. +..+|+||||+.|. .++.++.+ +|.|++++=|++.-.+
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGN 267 (433)
T ss_pred eEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 6889996 57899999999886 57777766 6999999998887554
No 112
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=91.35 E-value=0.091 Score=45.60 Aligned_cols=30 Identities=37% Similarity=0.321 Sum_probs=19.0
Q ss_pred ccceeeee-eEe-eecC--ccccccCC-CccCHHH
Q psy11866 14 WVRYFLHS-GHL-TIAG--CKMSKSLK-NFITIQD 43 (255)
Q Consensus 14 ~~~~~~h~-g~l-~~~g--~KMSKSlG-N~i~~~d 43 (255)
-|...+|. ..+ -.+| .|||||.| |.|.+.|
T Consensus 171 ~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 171 KPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred CCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 34444431 333 3555 59999999 9887765
No 113
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.05 E-value=0.084 Score=47.60 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=25.1
Q ss_pred cccceeeeeeEe-eecCccccccC-CCccCHHHHHhhcChhHHHHHHh
Q psy11866 13 SWVRYFLHSGHL-TIAGCKMSKSL-KNFITIQDALNKHTARQLRLAFL 58 (255)
Q Consensus 13 ~~~~~~~h~g~l-~~~g~KMSKSl-GN~i~~~d~l~~~~~d~lR~~ll 58 (255)
+-|..+ |+-++ ..+|.|||||. +|.|.+.| +++.++=-+.
T Consensus 234 ~~P~~l-~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kKI~ 275 (368)
T PRK12285 234 IKPSST-YHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKKIM 275 (368)
T ss_pred CCchhH-hhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHHHH
Confidence 345444 44454 77899999998 57887655 4555544333
No 114
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=90.67 E-value=0.69 Score=45.63 Aligned_cols=62 Identities=16% Similarity=0.002 Sum_probs=48.4
Q ss_pred eeeeeeEeeecCccccccC-------CCc--------cCHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHHHHHH
Q psy11866 17 YFLHSGHLTIAGCKMSKSL-------KNF--------ITIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTMEMAVT 78 (255)
Q Consensus 17 ~~~h~g~l~~~g~KMSKSl-------GN~--------i~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~~a~~ 78 (255)
+..|-||+.+.|.||||+. |-+ -|+..+-. +|.|+++|-|++..++ ..+..++++.|..+.+
T Consensus 260 ~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 260 RQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred ceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHH
Confidence 4567899999999999998 332 15666665 6999999999998764 4677889998887653
No 115
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=90.51 E-value=0.55 Score=43.43 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=44.1
Q ss_pred CcccceeeeeeEee-ecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCCC--cccChhHHHH
Q psy11866 12 DSWVRYFLHSGHLT-IAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQT--LDYSDNTMEM 75 (255)
Q Consensus 12 ~~~~~~~~h~g~l~-~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~~--~~fs~~~l~~ 75 (255)
.+.| .|.|.+.+. .+|.|+||..|. +++.++.+ +|.|++++=|++.-++..+ --||.+.+.+
T Consensus 222 ~~~P-~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~ 287 (445)
T PRK12558 222 AKPP-VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAE 287 (445)
T ss_pred CCCC-eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 3445 578888864 689999999876 68888776 6999999988877554422 2245555543
No 116
>PLN02907 glutamate-tRNA ligase
Probab=90.38 E-value=0.7 Score=45.43 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=49.5
Q ss_pred CcccceeeeeeEeeecCccccccC------CCcc---------CHHHHHh-hcChhHHHHHHhccC-CCCCcccChhHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSL------KNFI---------TIQDALN-KHTARQLRLAFLLHA-WHQTLDYSDNTME 74 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSl------GN~i---------~~~d~l~-~~~~d~lR~~ll~~~-y~~~~~fs~~~l~ 74 (255)
.+.| ++.|-||++++|.||||+. .+.+ |++.+.. +|.|+++|=|+...+ -+++..|+++.|.
T Consensus 431 ~~~p-~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~ 509 (722)
T PLN02907 431 LRKV-HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLW 509 (722)
T ss_pred CCCC-eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHH
Confidence 3445 4677889999999999998 2333 5666654 599999999999876 4577899999887
Q ss_pred HHH
Q psy11866 75 MAV 77 (255)
Q Consensus 75 ~a~ 77 (255)
...
T Consensus 510 ~~n 512 (722)
T PLN02907 510 TIN 512 (722)
T ss_pred HHH
Confidence 654
No 117
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.66 E-value=0.25 Score=43.98 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeecCc--cccccCC---CccCHHHHHhhcChhHHHHHHh
Q psy11866 24 LTIAGC--KMSKSLK---NFITIQDALNKHTARQLRLAFL 58 (255)
Q Consensus 24 l~~~g~--KMSKSlG---N~i~~~d~l~~~~~d~lR~~ll 58 (255)
.-++|. |||||.+ |.|.+.| +++.++=-+.
T Consensus 185 ~gL~g~~~KMSKS~~~~~~~I~l~D-----~~~~I~~KI~ 219 (333)
T PRK00927 185 MGLDGPTKKMSKSDPNDNNTINLLD-----DPKTIAKKIK 219 (333)
T ss_pred cCCCCCCCCCCCCCCCCCCeEEeeC-----CHHHHHHHHH
Confidence 355676 9999999 7887655 4555544333
No 118
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=86.32 E-value=1.2 Score=42.41 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=48.9
Q ss_pred eeeeeEeeecCccccccCCCc---------------cCHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHHHHHH
Q psy11866 18 FLHSGHLTIAGCKMSKSLKNF---------------ITIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTMEMAVT 78 (255)
Q Consensus 18 ~~h~g~l~~~g~KMSKSlGN~---------------i~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~~a~~ 78 (255)
..|.|.++++|.||||++... .|+..+.. +|.|+++|=|++..++ +++..++++.|....+
T Consensus 274 ~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 274 VWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred eEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 345588999999999999874 46777665 5999999999998875 4677888888887653
No 119
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=86.19 E-value=0.44 Score=43.26 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=24.7
Q ss_pred eeeeeeEe-ee-cC-ccccccCCC-ccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TI-AG-CKMSKSLKN-FITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~-~g-~KMSKSlGN-~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
..+|+.+| -+ +| .|||||.+| .|.+.| +++.+|=-+.+
T Consensus 241 ~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kKI~k 282 (383)
T PTZ00126 241 IILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRKIKK 282 (383)
T ss_pred eeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHHHHh
Confidence 45566665 34 45 799999988 576665 56666554443
No 120
>PLN02627 glutamyl-tRNA synthetase
Probab=85.80 E-value=1.9 Score=40.80 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=38.2
Q ss_pred cccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC
Q psy11866 13 SWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH 63 (255)
Q Consensus 13 ~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~ 63 (255)
+.| .|.|...+ .-+|+||||..|- +++.++.+ +|.|++++=|++.-+|.
T Consensus 276 ~~P-~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws 326 (535)
T PLN02627 276 PMP-RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWN 326 (535)
T ss_pred CCC-eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 446 57888885 5678999999865 67888776 69999999888876654
No 121
>PLN02486 aminoacyl-tRNA ligase
Probab=84.67 E-value=0.46 Score=43.07 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=25.6
Q ss_pred eeeeeeEe-eecC--ccccccCCC-ccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAG--CKMSKSLKN-FITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g--~KMSKSlGN-~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
..+|+.++ .+.| .|||||.+| .|.+.| +|+.++=.+..
T Consensus 249 ~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 249 ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 34565554 4555 699999988 687776 66666655544
No 122
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=84.40 E-value=0.42 Score=42.50 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=18.4
Q ss_pred eeeeEe-eecCc--cccccC-CCccCHHH
Q psy11866 19 LHSGHL-TIAGC--KMSKSL-KNFITIQD 43 (255)
Q Consensus 19 ~h~g~l-~~~g~--KMSKSl-GN~i~~~d 43 (255)
+++.+| ..+|. |||||. ||.|.+.|
T Consensus 200 l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 200 IHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred EEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 444454 56776 999999 99997654
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.97 E-value=1.1 Score=40.82 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=18.4
Q ss_pred cceeeeeeEe-eecCccccccCCC
Q psy11866 15 VRYFLHSGHL-TIAGCKMSKSLKN 37 (255)
Q Consensus 15 ~~~~~h~g~l-~~~g~KMSKSlGN 37 (255)
+.+-+|+-.| ..+|.|||||.||
T Consensus 208 ~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 208 KVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred CeEEEEeccccCCCCCcccccCCC
Confidence 3356777775 5799999999999
No 124
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=81.31 E-value=2 Score=40.10 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=33.6
Q ss_pred cCCCcccceeeeeeEeee-cCccccccCCCccCHHHHH-hhcChhHHHHHHhc
Q psy11866 9 FNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDAL-NKHTARQLRLAFLL 59 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l-~~~~~d~lR~~ll~ 59 (255)
+| .+.|. +.|.+.++. +|+|||||.| .+++.+.. .+|.+.+++-++..
T Consensus 230 lg-~~~P~-~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 230 LG-WPPPV-YAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred cC-CCCCc-EEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 45 34464 678888755 4569999999 77777643 56888877776654
No 125
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=80.30 E-value=0.63 Score=42.17 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.1
Q ss_pred eecCccccccCCCccCHHH
Q psy11866 25 TIAGCKMSKSLKNFITIQD 43 (255)
Q Consensus 25 ~~~g~KMSKSlGN~i~~~d 43 (255)
..+|.|||||.||.|+..+
T Consensus 216 ~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 216 PADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCCCCCccCCCCCcccCCc
Confidence 4579999999999876543
No 126
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=78.38 E-value=3 Score=36.56 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=33.9
Q ss_pred CcccceeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCC
Q psy11866 12 DSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWH 63 (255)
Q Consensus 12 ~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~ 63 (255)
.+.| .+.|.+.+ ..+|+||||+.|- .++.+ ..|.|+ +..++..-.+.
T Consensus 218 ~~~P-~y~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~lG~~ 265 (299)
T PRK05710 218 LPTP-RYLHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFLGQP 265 (299)
T ss_pred CCCC-eEEEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHcCCC
Confidence 3445 57888886 7899999999876 35655 788888 66666655543
No 127
>KOG2007|consensus
Probab=72.71 E-value=2.3 Score=39.57 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCchHHHHHhhHhhhcCCCCCCceeccCC
Q psy11866 217 RDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 217 r~~~R~~ar~~k~~~~~~~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
+.+.|..|+++|+ ++.+|++|.+ ++..||.++|.|
T Consensus 531 ~~eek~~ae~~K~---~~k~d~~~~~-~~~~~~a~~~i~ 565 (586)
T KOG2007|consen 531 EREEKTSAEKNKD---KEKSDRIREE-LAAKGIALMKIP 565 (586)
T ss_pred HHHHHhHHHHHHH---HHHHHHHHHH-HHHhHHHhhcCC
Confidence 3467888999999 7999999999 699999998864
No 128
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=72.09 E-value=7.1 Score=37.30 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=46.2
Q ss_pred cccceeeeeeEeeecC-ccccccCC-------Cc--------cCHHHHHh-hcChhHHHHHHhccCC-CCCcccChhHHH
Q psy11866 13 SWVRYFLHSGHLTIAG-CKMSKSLK-------NF--------ITIQDALN-KHTARQLRLAFLLHAW-HQTLDYSDNTME 74 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g-~KMSKSlG-------N~--------i~~~d~l~-~~~~d~lR~~ll~~~y-~~~~~fs~~~l~ 74 (255)
+.| .+.|.+++..++ .|+||+.+ -+ .|+..+-. +|.|+++|=|++..++ ..+..++++.|.
T Consensus 312 ~~P-~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~ 390 (560)
T TIGR00463 312 ELP-EFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIY 390 (560)
T ss_pred CCC-eEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHH
Confidence 345 578889987765 59999873 11 24444443 6999999999998764 467889999888
Q ss_pred HHH
Q psy11866 75 MAV 77 (255)
Q Consensus 75 ~a~ 77 (255)
...
T Consensus 391 ~~n 393 (560)
T TIGR00463 391 AFN 393 (560)
T ss_pred HHH
Confidence 765
No 129
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=67.77 E-value=2.5 Score=41.20 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhhhcccccc
Q psy11866 161 NQLLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ilGi~~ 183 (255)
+-..+..+..+..+++.-+|+..
T Consensus 428 ~l~~I~~~~~y~~~~~~a~G~~~ 450 (682)
T PTZ00348 428 EEKDISAALEVNCALLKAYGLPS 450 (682)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556667777777777777754
No 130
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=67.08 E-value=8.4 Score=34.00 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=30.2
Q ss_pred cccceeeeeeE-eeecCccccccCCCcc-CHHHHHh-hcChhHHHHHHhccCC
Q psy11866 13 SWVRYFLHSGH-LTIAGCKMSKSLKNFI-TIQDALN-KHTARQLRLAFLLHAW 62 (255)
Q Consensus 13 ~~~~~~~h~g~-l~~~g~KMSKSlGN~i-~~~d~l~-~~~~d~lR~~ll~~~y 62 (255)
+.|.+ .|+.. ++.+|.|+||+.+-.. .+..+.+ .+.++++--|+..-++
T Consensus 226 ~~P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~ 277 (314)
T PF00749_consen 226 PPPPY-AHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGW 277 (314)
T ss_dssp SS-EE-EEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB
T ss_pred CCcce-EeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHhcC
Confidence 44654 55554 7889999999998753 3555544 4677766555554444
No 131
>KOG1907|consensus
Probab=60.26 E-value=3.4 Score=41.15 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=25.4
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccC
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSL 35 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSl 35 (255)
|.|||..- ..|+|+-+|-|+++|+||=|||
T Consensus 224 d~aQsnSE-----HsRHwfF~g~~~IDg~k~d~SL 253 (1320)
T KOG1907|consen 224 DFAQSNSE-----HSRHWFFRGDWTIDGRKQDKSL 253 (1320)
T ss_pred eeccccch-----hhhhheeccceEEecccCchHH
Confidence 67887653 3679999999999999999997
No 132
>PLN02886 aminoacyl-tRNA ligase
Probab=59.83 E-value=4.3 Score=36.91 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=11.8
Q ss_pred cC-ccccccCC---CccCHHH
Q psy11866 27 AG-CKMSKSLK---NFITIQD 43 (255)
Q Consensus 27 ~g-~KMSKSlG---N~i~~~d 43 (255)
+| .|||||.. |.|.+.|
T Consensus 247 ~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 247 DGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred CCCCcCCCCCCCCCCeEEecC
Confidence 44 69999995 5675543
No 133
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.55 E-value=5 Score=32.83 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=14.8
Q ss_pred eEeeecCccccccCCCcc
Q psy11866 22 GHLTIAGCKMSKSLKNFI 39 (255)
Q Consensus 22 g~l~~~g~KMSKSlGN~i 39 (255)
-+|-+||.|||+|+.-.-
T Consensus 30 DlLvvdG~K~SgsLlk~k 47 (216)
T COG3110 30 DLLVVDGKKVSGSLLKGK 47 (216)
T ss_pred cEEEecCcccccccccCc
Confidence 567889999999987644
No 134
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=56.09 E-value=4.6 Score=34.93 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=19.4
Q ss_pred cccceeeeeeEe-eecCccccccCCC
Q psy11866 13 SWVRYFLHSGHL-TIAGCKMSKSLKN 37 (255)
Q Consensus 13 ~~~~~~~h~g~l-~~~g~KMSKSlGN 37 (255)
+-| .|.|.+.+ +.+|.|+||+.|-
T Consensus 212 ~~P-~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 212 PPP-RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred CCC-eEEechhhhCCCCCeeeccCCc
Confidence 345 58898985 7899999999875
No 135
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=50.42 E-value=2.6e+02 Score=27.58 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 111 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 111 ~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.++.+.+.+..+...+..++ ..-++..|+..+.++..-+..|++.
T Consensus 609 ~~~E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~L~~L~~pId~FFd~ 655 (691)
T COG0751 609 EDAEKALFEALQALKPKVAEAL-AEKDYQDALAALAELRPPIDEFFDN 655 (691)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhHHHHhcC
Confidence 4567888888888888888888 7789999999999998888899987
No 136
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=41.93 E-value=3.6e+02 Score=26.75 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 111 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 111 ~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+..+.+.+..+...+...+ ..-++..++..+.++...++.|++.
T Consensus 610 ~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~l~~L~~~Id~FFD~ 656 (691)
T TIGR00211 610 EPKEKALFEAVLAIKMNAQESF-ESGDYETALEALAELRAPVDEFFDS 656 (691)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHhhhHHHHHhCC
Confidence 4567788888887777777776 5559999999999999999999987
No 137
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=41.61 E-value=3.6e+02 Score=26.69 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 111 TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 111 ~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.|+.+.+.+..+...+..++ ..-++..++..+..+..-++.|++.
T Consensus 600 ~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~l~~L~~~Id~FFD~ 646 (682)
T PRK01233 600 EPAEKALYAALEELKPKVEPAL-AAGDYQAALEALAALRPPVDAFFDN 646 (682)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHhhhhHHHHHhCC
Confidence 4567888888888888888887 6669999999999999999999987
No 138
>KOG2713|consensus
Probab=36.47 E-value=14 Score=32.11 Aligned_cols=42 Identities=19% Similarity=-0.006 Sum_probs=23.4
Q ss_pred CccccccCCCccC-------HHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHH
Q psy11866 28 GCKMSKSLKNFIT-------IQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMA 76 (255)
Q Consensus 28 g~KMSKSlGN~i~-------~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a 76 (255)
..|||||-+|--. |..+.+++.- +.+...+.+.|++..=..+
T Consensus 209 ekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-------a~TD~~~~vtYd~~~Rpgv 257 (347)
T KOG2713|consen 209 EKKMSKSDPNPKSRINLTDSPDLIVKKIKK-------AQTDNTSGVTYDPANRPGV 257 (347)
T ss_pred hhhcccCCCCCcceEEecCCHHHHHHHHHH-------HhcccccceeeCCccccch
Confidence 4699999988332 3334333211 2334556677777654444
No 139
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=31.98 E-value=18 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=14.1
Q ss_pred ccceeeeeeEeeecCccccccC
Q psy11866 14 WVRYFLHSGHLTIAGCKMSKSL 35 (255)
Q Consensus 14 ~~~~~~h~g~l~~~g~KMSKSl 35 (255)
|+-.+...||+..+|+.+|++.
T Consensus 6 ~~~~~~P~gwl~cdG~~~~~~~ 27 (57)
T PF07484_consen 6 FAGNTAPSGWLLCDGQSLSIAQ 27 (57)
T ss_dssp ESSSS-STTEEESBS-B--TTT
T ss_pred ecCCCCCchhhhcCCCcCChhH
Confidence 4445567899999999999985
No 140
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=31.18 E-value=14 Score=30.46 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.5
Q ss_pred ccceeeeeeEeeecCccc
Q psy11866 14 WVRYFLHSGHLTIAGCKM 31 (255)
Q Consensus 14 ~~~~~~h~g~l~~~g~KM 31 (255)
-++.++.|||+++||++.
T Consensus 111 qARQlV~HGHI~VnGk~V 128 (205)
T COG0522 111 QARQLVSHGHILVNGKRV 128 (205)
T ss_pred HHHHHhhcceEEECCEEe
Confidence 477889999999999875
No 141
>PTZ00478 Sec superfamily; Provisional
Probab=28.74 E-value=1.5e+02 Score=20.61 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--CCCHHHHHHHHHHHHHhhhcccc
Q psy11866 138 TRSALDSIRDCISQVNIYLRG--TPNQLLLRDIGAYVTKILTVFGC 181 (255)
Q Consensus 138 ~~~al~~l~~l~~~~N~~~~~--~~~~~~l~~~~~~~~~~~~ilGi 181 (255)
....+..+.+|++++-+++.. +|+......++....--.-++|+
T Consensus 16 ~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~ 61 (81)
T PTZ00478 16 VGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGF 61 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888876 77766555555444433344443
No 142
>KOG2144|consensus
Probab=22.07 E-value=36 Score=29.72 Aligned_cols=11 Identities=45% Similarity=0.238 Sum_probs=9.4
Q ss_pred cCccccccCCC
Q psy11866 27 AGCKMSKSLKN 37 (255)
Q Consensus 27 ~g~KMSKSlGN 37 (255)
.|+|||||--|
T Consensus 219 q~~KMSsSd~~ 229 (360)
T KOG2144|consen 219 QGEKMSSSDPL 229 (360)
T ss_pred ccCccccCCcc
Confidence 49999999766
No 143
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.20 E-value=5.6e+02 Score=22.35 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11866 208 PYLTILSEFRDNIRTEAR 225 (255)
Q Consensus 208 ~~i~~l~~~r~~~R~~ar 225 (255)
.+-+.|.++|.++|+..|
T Consensus 276 ~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 276 ELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 445667766666666543
No 144
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=20.43 E-value=14 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.1
Q ss_pred cccceeeeeeEeeecCccccccC
Q psy11866 13 SWVRYFLHSGHLTIAGCKMSKSL 35 (255)
Q Consensus 13 ~~~~~~~h~g~l~~~g~KMSKSl 35 (255)
.-++.|+.+|.+.+||++..+..
T Consensus 17 ~~a~~~I~~g~V~VNg~~v~~~~ 39 (48)
T PF01479_consen 17 SEARRLIKQGRVKVNGKVVKDPS 39 (48)
T ss_dssp HHHHHHHHTTTEEETTEEESSTT
T ss_pred HHHHHhcCCCEEEECCEEEcCCC
Confidence 45778999999999999887654
No 145
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.05 E-value=1.5e+02 Score=23.77 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHhhHhhh
Q psy11866 209 YLTILSEFRDNIRTEARLIKSTEILNQCDRLRD 241 (255)
Q Consensus 209 ~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR~ 241 (255)
.++.|..+|..+|+++.+-- +.+.|++++
T Consensus 146 EaeQLQsLR~avRqElqELE----~QL~DRl~~ 174 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELE----FQLEDRLLQ 174 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 57888889999999988776 688888876
Done!