Query psy11866
Match_columns 255
No_of_seqs 237 out of 1843
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:57:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.2E-46 4.1E-51 342.0 12.0 214 1-255 241-454 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 6.2E-45 2.1E-49 332.3 10.3 217 1-255 271-493 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 4E-42 1.4E-46 314.6 11.8 215 2-255 239-453 (461)
4 3u1f_A Methionyl-tRNA syntheta 100.0 4.7E-29 1.6E-33 233.1 13.4 169 11-181 304-480 (542)
5 3c8z_A Cysteinyl-tRNA syntheta 100.0 8.7E-29 3E-33 223.9 10.0 150 2-182 263-413 (414)
6 1wz2_A Leucyl-tRNA synthetase; 99.9 1.6E-26 5.6E-31 228.0 22.4 148 1-158 621-770 (967)
7 1rqg_A Methionyl-tRNA syntheta 99.9 3.5E-27 1.2E-31 226.4 15.7 144 12-158 326-472 (722)
8 1wkb_A Leucyl-tRNA synthetase; 99.9 5E-27 1.7E-31 228.5 16.8 148 1-158 621-770 (810)
9 2x1l_A Methionyl-tRNA syntheta 99.9 8.4E-27 2.9E-31 217.1 11.8 151 3-158 285-438 (524)
10 2csx_A Methionyl-tRNA syntheta 99.9 1.4E-26 4.8E-31 214.3 11.8 146 3-158 270-418 (497)
11 3kfl_A Methionyl-tRNA syntheta 99.9 1.1E-25 3.7E-30 211.0 15.5 169 10-183 320-498 (564)
12 1ffy_A Isoleucyl-tRNA syntheta 99.9 9.3E-26 3.2E-30 221.0 13.3 155 1-158 566-723 (917)
13 1ile_A Ilers, isoleucyl-tRNA s 99.9 1.5E-25 5.1E-30 218.2 13.8 154 1-158 562-722 (821)
14 1gax_A Valrs, valyl-tRNA synth 99.9 2.5E-25 8.4E-30 216.5 15.0 151 1-158 499-652 (862)
15 2d5b_A Methionyl-tRNA syntheta 99.9 4E-26 1.4E-30 211.4 8.0 170 3-182 271-451 (500)
16 4dlp_A Aminoacyl-tRNA syntheta 99.9 4.9E-25 1.7E-29 205.6 13.7 144 12-158 303-449 (536)
17 4arc_A Leucine--tRNA ligase; l 99.9 4.7E-23 1.6E-27 200.2 16.8 121 30-156 639-760 (880)
18 3h99_A Methionyl-tRNA syntheta 99.9 3.7E-23 1.3E-27 193.8 11.2 139 12-158 327-470 (560)
19 2v0c_A Aminoacyl-tRNA syntheta 99.9 4.5E-22 1.6E-26 194.2 18.5 143 29-177 636-780 (878)
20 1iq0_A Arginyl-tRNA synthetase 99.9 6.3E-22 2.2E-26 186.2 12.3 171 10-184 372-589 (592)
21 3fnr_A Arginyl-tRNA synthetase 99.8 1.6E-20 5.6E-25 171.1 13.0 173 9-184 260-451 (464)
22 2zue_A Arginyl-tRNA synthetase 99.8 1.2E-20 4.1E-25 178.3 9.1 172 10-184 402-626 (629)
23 1f7u_A Arginyl-tRNA synthetase 99.7 7.9E-17 2.7E-21 151.4 13.0 170 10-184 390-604 (607)
24 1irx_A Lysyl-tRNA synthetase; 99.6 9.4E-16 3.2E-20 142.4 6.2 69 8-78 257-328 (523)
25 3aii_A Glutamyl-tRNA synthetas 99.1 3.7E-11 1.3E-15 110.6 2.6 74 3-78 302-394 (553)
26 1qtq_A GLNRS, protein (glutami 98.7 6E-09 2E-13 96.0 3.6 72 3-77 239-331 (553)
27 2hz7_A Glutaminyl-tRNA synthet 98.4 1.7E-07 5.7E-12 90.2 4.2 69 6-77 285-371 (851)
28 2cfo_A Glutamyl-tRNA synthetas 98.2 1.4E-06 4.7E-11 79.9 6.1 54 8-64 226-281 (492)
29 2o5r_A Glutamyl-tRNA synthetas 97.4 0.00014 4.7E-09 66.5 5.2 53 9-64 242-296 (481)
30 1j09_A Glutamyl-tRNA synthetas 97.3 0.00028 9.5E-09 64.2 6.0 62 9-73 223-289 (468)
31 2cyb_A Tyrosyl-tRNA synthetase 97.1 0.00046 1.6E-08 59.9 4.9 39 17-60 200-239 (323)
32 3afh_A Glutamyl-tRNA synthetas 97.0 0.00085 2.9E-08 61.3 6.1 52 9-63 235-288 (488)
33 3al0_C Glutamyl-tRNA(Gln) amid 96.9 0.00081 2.8E-08 62.9 4.6 52 9-63 339-392 (592)
34 1nzj_A Hypothetical protein YA 96.6 0.00031 1.1E-08 60.2 0.1 36 4-42 201-239 (298)
35 2ja2_A Glutamyl-tRNA synthetas 96.6 0.004 1.4E-07 57.0 7.0 49 13-63 240-290 (498)
36 1y42_X Tyrosyl-tRNA synthetase 95.4 0.0065 2.2E-07 53.9 2.7 42 16-59 278-320 (392)
37 2yxn_A Tyrosyl-tRNA synthetase 95.2 0.0047 1.6E-07 53.4 1.1 40 18-59 222-262 (322)
38 1h3f_A Tyrosyl-tRNA synthetase 95.2 0.0083 2.8E-07 53.9 2.6 40 16-60 216-257 (432)
39 2pid_A Tyrosyl-tRNA synthetase 95.2 0.0063 2.1E-07 53.4 1.7 41 17-59 240-281 (356)
40 2g36_A Tryptophanyl-tRNA synth 95.1 0.0068 2.3E-07 52.8 1.7 36 20-60 194-230 (340)
41 2ts1_A Tyrosyl-tRNA synthetase 95.0 0.0083 2.8E-07 53.7 2.1 41 17-59 216-257 (419)
42 3tzl_A Tryptophanyl-tRNA synth 95.0 0.006 2.1E-07 52.8 0.9 30 25-59 187-216 (322)
43 1jil_A Tyrrs, tyrosyl-tRNA syn 94.9 0.0094 3.2E-07 53.4 2.2 41 17-59 217-258 (420)
44 4g6z_A Glutamate-tRNA ligase; 94.9 0.052 1.8E-06 49.4 6.9 63 9-74 244-310 (490)
45 2jan_A Tyrosyl-tRNA synthetase 94.8 0.01 3.5E-07 53.3 2.0 41 17-59 217-259 (432)
46 1n3l_A Tyrosyl-tRNA synthetase 93.9 0.012 4.2E-07 51.8 0.4 45 17-67 208-254 (372)
47 2zp1_A Tyrosyl-tRNA synthetase 93.3 0.022 7.4E-07 49.1 1.0 27 17-43 189-217 (314)
48 1yi8_B Tryptophanyl-tRNA synth 93.1 0.02 6.9E-07 50.1 0.5 40 15-59 197-239 (351)
49 2el7_A Tryptophanyl-tRNA synth 93.0 0.02 6.8E-07 49.8 0.4 31 25-60 189-220 (337)
50 2dlc_X Tyrosyl-tRNA synthetase 92.5 0.025 8.6E-07 50.2 0.3 37 17-58 212-251 (394)
51 3hzr_A Tryptophanyl-tRNA synth 92.0 0.059 2E-06 47.6 2.0 37 17-58 254-293 (386)
52 3i05_A Tryptophanyl-tRNA synth 91.9 0.044 1.5E-06 48.6 1.1 34 17-55 254-290 (395)
53 1i6k_A TRPRS, tryptophanyl-tRN 90.2 0.061 2.1E-06 46.5 0.3 18 25-42 185-207 (328)
54 3vgj_A Tyrosyl-tRNA synthetase 90.1 0.1 3.5E-06 46.0 1.7 26 17-42 231-260 (373)
55 2yy5_A Tryptophanyl-tRNA synth 89.6 0.07 2.4E-06 46.5 0.2 19 25-43 195-218 (348)
56 3hv0_A Tryptophanyl-tRNA synth 89.5 0.071 2.4E-06 47.2 0.2 26 17-42 250-279 (393)
57 1r6u_A Tryptophanyl-tRNA synth 89.0 0.1 3.5E-06 46.8 0.8 25 19-43 288-316 (437)
58 4gri_A Glutamate--tRNA ligase; 88.0 0.71 2.4E-05 42.3 5.8 63 9-74 253-320 (512)
59 2cya_A Tyrosyl-tRNA synthetase 87.9 0.12 4.2E-06 45.3 0.5 27 28-59 236-263 (364)
60 3jxe_A Tryptophanyl-tRNA synth 87.8 0.13 4.5E-06 45.5 0.8 25 18-42 238-266 (392)
61 2ip1_A Tryptophanyl-tRNA synth 87.8 0.1 3.6E-06 46.8 0.1 26 18-43 280-309 (432)
62 1r6t_A Tryptophanyl-tRNA synth 87.1 0.15 5.3E-06 46.3 0.8 26 18-43 334-363 (477)
63 3foc_A Tryptophanyl-tRNA synth 84.7 0.25 8.6E-06 44.4 0.9 24 18-41 318-345 (451)
64 2cyc_A Tyrosyl-tRNA synthetase 84.2 0.23 7.9E-06 43.7 0.4 26 29-59 250-276 (375)
65 2j5b_A Tyrosyl-tRNA synthetase 84.1 0.21 7.1E-06 43.5 0.1 26 17-42 216-245 (348)
66 3tze_A Tryptophanyl-tRNA synth 83.7 0.27 9.2E-06 43.7 0.7 26 18-43 274-303 (406)
67 3sz3_A Tryptophanyl-tRNA synth 83.7 0.16 5.6E-06 44.0 -0.7 16 27-42 197-216 (341)
68 3n9i_A Tryptophanyl-tRNA synth 83.2 0.26 9E-06 42.8 0.3 16 27-42 203-222 (346)
69 3p0j_A Tyrosyl-tRNA synthetase 82.7 0.3 1E-05 46.4 0.6 24 17-40 214-241 (690)
70 3prh_A Tryptophanyl-tRNA synth 82.5 0.29 1E-05 43.2 0.4 17 27-43 222-242 (388)
71 3a04_A Tryptophanyl-tRNA synth 64.9 1.7 5.7E-05 38.1 0.6 24 18-41 243-268 (372)
72 1use_A VAsp, vasodilator-stimu 40.2 7.7 0.00026 22.8 0.5 26 219-249 19-44 (45)
73 1pyv_A ATP synthase beta chain 36.5 12 0.00041 21.8 0.9 14 27-40 18-31 (54)
74 1ufz_A Hypothetical protein BA 27.4 68 0.0023 21.4 3.5 21 128-148 55-75 (83)
75 2e62_A Protein AT5G25060; CWF2 21.1 34 0.0012 21.4 1.1 37 212-249 24-60 (61)
76 2lsw_A Disabled homolog 2; pla 20.5 54 0.0018 18.4 1.7 27 29-55 6-32 (40)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-46 Score=342.00 Aligned_cols=214 Identities=24% Similarity=0.350 Sum_probs=131.8
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
|+|||+|++|+ ||+++|+|+|+|+++|+|||||+||||+|.|++++||+|++|||++++||++|++||++.+.++.+
T Consensus 241 eiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~-- 317 (462)
T 3tqo_A 241 EIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRL-- 317 (462)
T ss_dssp HHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHH--
T ss_pred HHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHH--
Confidence 58999999996 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP 160 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~ 160 (255)
.++++++.+.. .... . .+ .+..+.+.|.++|+||||||.|++.|+++++.+|.++....
T Consensus 318 -~l~rl~~~~~~----~~~~-------~----~~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~ 376 (462)
T 3tqo_A 318 -ALERFYLALRG----LPVV-------N----HE-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ 376 (462)
T ss_dssp -HHHHHHHHHTT----CCC----------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHH----hhhc-------c----ch-----hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc
Confidence 45555544321 1100 0 00 12345678999999999999999999999999999876532
Q ss_pred CHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHhh
Q psy11866 161 NQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR 240 (255)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR 240 (255)
...+..+...+..+..+|||....+...+. .. . +....+.|+.|+ +.|++||++|| |++||+||
T Consensus 377 -~~~~~~~~~~~~~~~~vlg~~~~~~~~~~~-~~----~---~~~~~~~i~~li----~~R~~ar~~kd---~~~aD~iR 440 (462)
T 3tqo_A 377 -IEKAAVLAAELKCLGNIFGLLQYSPEQFLQ-GA----K---KEADVQEIKKLI----DQRNEARAKKD---WKTADQIR 440 (462)
T ss_dssp -HHHHHHHHHHHHHHHGGGTCSCSCHHHHC--------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccchhhhhh-cc----c---cccCHHHHHHHH----HHHHHHHHhcC---HHHHHHHH
Confidence 344556667788899999997654321111 00 0 111113466666 68999999999 89999999
Q ss_pred hcCCCCCCceeccCC
Q psy11866 241 DEVLPNVGVRLEDIE 255 (255)
Q Consensus 241 ~~~L~~~Gi~l~D~~ 255 (255)
|+ |.++||.|+|+|
T Consensus 441 ~~-L~~~Gi~l~D~~ 454 (462)
T 3tqo_A 441 DQ-LTDLGVAIEDSS 454 (462)
T ss_dssp ---------------
T ss_pred HH-HHHCCcEEEEcC
Confidence 99 799999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=6.2e-45 Score=332.33 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=148.0
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~ 79 (255)
++|||+|++| .||+++|+|+|||+++|+|||||+||||+|.|++++ ||+|++||||++.||++|++||++.+.++.+.
T Consensus 271 eiAqs~a~~g-~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 271 EIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA 349 (501)
T ss_dssp HHHHHHHHHT-SCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHH
T ss_pred HHHHHHHccC-CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHh
Confidence 3799999998 599999999999999999999999999999999998 99999999999999999999999999999864
Q ss_pred -HHHHHHHHHHHHH---HHhhc-cCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh
Q psy11866 80 -EKLLNEFFLNVKD---HIRNL-KFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI 154 (255)
Q Consensus 80 -~~~l~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~ 154 (255)
...++++++.+.+ ..... ... .. .. . ...+..+.+.|.+||+||||||.|++.|+++++.+|.
T Consensus 350 ~~~ll~rl~~~~~~~~~~~~~~~~~~-~~----~~---~----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~~ 417 (501)
T 3sp1_A 350 RENLINKLSYFYESLDPVDLNTLNKD-LK----NF---G----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNL 417 (501)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHSC-TT----SC---S----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSSS
T ss_pred hHHHHHHHHHHHHHHHhhhccccccc-cc----ch---h----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcc
Confidence 1123333333322 11100 000 00 00 0 1124556788999999999999999999999998861
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q psy11866 155 YLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILN 234 (255)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~ 234 (255)
... .+...+..++.+|||...... +.... ... ..+.+.|+.|+ +.|++||++|| |+
T Consensus 418 ------~~~---~~~~~~~~~~~vlGl~~~~~~--~~~~~--~~~----~~~~~~i~~li----~~R~~ar~~kd---~~ 473 (501)
T 3sp1_A 418 ------SFV---SKLRLAFIFDEIMSLNLREEI--LKNLQ--NHD----VVIDENMKALI----EERRIAKCEKN---FK 473 (501)
T ss_dssp ------CHH---HHHHHHHHHHHHHCCCHHHHH--HHHHT--TSC----CCCCHHHHHHH----HHHHHHHHTTC---HH
T ss_pred ------CHH---HHHHHHHHHHHHcCCCcccch--hhccc--ccc----hhhHHHHHHHH----HHHHHHHHccC---HH
Confidence 221 123566778899999653210 00000 000 11224577777 68999999999 89
Q ss_pred HhhHhhhcCCCCCCceeccCC
Q psy11866 235 QCDRLRDEVLPNVGVRLEDIE 255 (255)
Q Consensus 235 ~aD~iR~~~L~~~Gi~l~D~~ 255 (255)
+||+|||+ |.++||.|+|+|
T Consensus 474 ~aD~iRd~-L~~~Gi~l~D~~ 493 (501)
T 3sp1_A 474 RADEIRDF-FAKKGFVLVDTK 493 (501)
T ss_dssp HHHHHHHH-HHHTTCCCC---
T ss_pred HHHHHHHH-HHHCCcEEEEcC
Confidence 99999999 799999999986
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=4e-42 Score=314.57 Aligned_cols=215 Identities=23% Similarity=0.324 Sum_probs=129.5
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK 81 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~ 81 (255)
+||++|++|. ||+++|+|+|||+++|+|||||+||||+|.|++++||+|++|||++++||++|++||++.+.++.+.
T Consensus 239 ~aq~~a~~g~-~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~-- 315 (461)
T 1li5_A 239 IAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA-- 315 (461)
T ss_dssp HHHHHHHSSS-CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHH--
T ss_pred HHHHHHhcCC-CCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHH--
Confidence 6899999885 8999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCC
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPN 161 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~ 161 (255)
+.++++.+ ++.. ..++ + + .+..+.+.|.++|+|||||+.|++.|+++++.+|+|++. +
T Consensus 316 -l~rl~n~~----~~~~---~~~~------~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~- 373 (461)
T 1li5_A 316 -LERLYTAL----RGTD---KTVA------P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D- 373 (461)
T ss_dssp -HHHHHHHH----TTCC---TTSC------C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C-
T ss_pred -HHHHHHHH----HHhh---cCCC------H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c-
Confidence 33333332 2211 1111 0 1 245567889999999999999999999999999999976 3
Q ss_pred HHHHHHHHHHHHHhhhccccccCCccccccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhhHhhh
Q psy11866 162 QLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRD 241 (255)
Q Consensus 162 ~~~l~~~~~~~~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~~R~~ar~~k~~~~~~~aD~iR~ 241 (255)
...+..+...+..++.+|||....+...+. .. ...... ..+.|+.|+ +.|++||++|| |++||+|||
T Consensus 374 ~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~--~~~~~~---~~~~~~~l~----~~r~~ar~~k~---~~~aD~iR~ 440 (461)
T 1li5_A 374 MAAANAMASHLRKLSAVLGLLEQEPEAFLQ-SG--AQADDS---EVAEIEALI----QQRLDARKAKD---WAAADAARD 440 (461)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSCSCHHHHC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCccChhhhhh-cc--cccccc---cHHHHHHHH----HHHHHHHhccC---HHHHHHHHH
Confidence 334555567888899999995322111111 00 000000 001356666 68999999999 899999999
Q ss_pred cCCCCCCceeccCC
Q psy11866 242 EVLPNVGVRLEDIE 255 (255)
Q Consensus 242 ~~L~~~Gi~l~D~~ 255 (255)
+ |.++||.|+|+|
T Consensus 441 ~-l~~~gi~~~d~~ 453 (461)
T 1li5_A 441 R-LNEMGIVLEDGP 453 (461)
T ss_dssp --------------
T ss_pred H-HHHCCCEEEEcC
Confidence 9 799999999986
No 4
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.96 E-value=4.7e-29 Score=233.15 Aligned_cols=169 Identities=18% Similarity=0.116 Sum_probs=128.7
Q ss_pred CCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHH
Q psy11866 11 NDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLN 89 (255)
Q Consensus 11 ~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~ 89 (255)
+.|++++|+|||||+.+|+|||||+||||+|.+++++||+|++|||+++. ++++|++||++.+.+..+. .++++++|.
T Consensus 304 g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~-~l~n~l~N~ 382 (542)
T 3u1f_A 304 GLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNG-ELADTLGNL 382 (542)
T ss_dssp TCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHH-TTTTTHHHH
T ss_pred cccccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhh-HHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999985 7999999999999887653 233444444
Q ss_pred HHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-CC------CH
Q psy11866 90 VKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TP------NQ 162 (255)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-~~------~~ 162 (255)
+.++...........+......+.|+++++.+.++.+.+.++| ++|++++|++.|++|++.+|+|++. .| +.
T Consensus 383 ~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~ 461 (542)
T 3u1f_A 383 VMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDP 461 (542)
T ss_dssp HHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCH
T ss_pred HHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCCH
Confidence 4444332111101223334556789999999999999999999 9999999999999999999999975 21 22
Q ss_pred HHHHHHHHHHHHhhhcccc
Q psy11866 163 LLLRDIGAYVTKILTVFGC 181 (255)
Q Consensus 163 ~~l~~~~~~~~~~~~ilGi 181 (255)
..+..++..+.++++.+.+
T Consensus 462 ~~~~~~l~~~~~~l~~~~~ 480 (542)
T 3u1f_A 462 ERLRTVLYITLEGVRVTTL 480 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455554443
No 5
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.95 E-value=8.7e-29 Score=223.91 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=106.2
Q ss_pred ccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhh-cChhHHHHHHhccCCCCCcccChhHHHHHHHHH
Q psy11866 2 SFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNK-HTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYE 80 (255)
Q Consensus 2 ~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~-~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~ 80 (255)
+||++|++|..||+++|+|+|||+++|+|||||+||+|+|.+++++ ||+|++|||+++.+|++|++||++.+.++.+.
T Consensus 263 ~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~~- 341 (414)
T 3c8z_A 263 AAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANAR- 341 (414)
T ss_dssp HHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHHHHHH-
T ss_pred HHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHHHHHHHHH-
Confidence 6899999987799999999999999999999999999999999999 99999999999999999999999999988653
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCC
Q psy11866 81 KLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTP 160 (255)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~ 160 (255)
++++++.+ ++.. . . .+.++.+.|.++|+|+|+|+.|++.|+++++.+|+ ....
T Consensus 342 --l~~l~n~~----~~~~---~-----~-----------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~--~~~~ 394 (414)
T 3c8z_A 342 --LARWRSAT----ALPE---A-----P-----------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS--YGGH 394 (414)
T ss_dssp --HHHHHHHH----TSSC---B-----S-----------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH--HCCS
T ss_pred --HHHHHHHH----Hhcc---c-----h-----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--ccCC
Confidence 44444433 2210 0 0 01345678999998999999999999999999999 3321
Q ss_pred CHHHHHHHHHHHHHhhhccccc
Q psy11866 161 NQLLLRDIGAYVTKILTVFGCI 182 (255)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ilGi~ 182 (255)
+.... ...++.+..+|||.
T Consensus 395 ~~~~~---~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 395 DTESP---RLVATTVDALLGVD 413 (414)
T ss_dssp BSSHH---HHHHHHHHHHHCCC
T ss_pred ChhhH---HHHHHHHHHHhCCC
Confidence 21111 24455677888874
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.6e-26 Score=227.95 Aligned_cols=148 Identities=21% Similarity=0.315 Sum_probs=123.4
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHh-ccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFL-LHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll-~~~y~~~~~fs~~~l~~a~~~ 79 (255)
|++|+.|+++..|||+.|+|||||+.+|+|||||+||||+|.+++++||+|++|||++ +++|++|++|+++.+..+.+
T Consensus 621 ~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~- 699 (967)
T 1wz2_A 621 FIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK- 699 (967)
T ss_dssp HHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHH-
T ss_pred HHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHH-
Confidence 3678999998778999999999999999999999999999999999999999999998 46899999999999988764
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHhhhhhc
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDCISQVNIYLRG 158 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l-~~l~~~~N~~~~~ 158 (255)
.++++++.+..+.... . +........|++++..+..+.+.+.++| ++|+++.|+..+ +.+++.+|+|++.
T Consensus 700 --~l~rl~n~~~~~~~~~-~-----~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~~l~~~~n~Yi~~ 770 (967)
T 1wz2_A 700 --QIERFYELISQFAEYE-V-----KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMNDLRWYLRR 770 (967)
T ss_dssp --HHHHHHHHHHHHHSSC-C-----CCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCC-C-----CCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556665555443211 0 0112335578999999999999999999 999999999865 6888999999875
No 7
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.95 E-value=3.5e-27 Score=226.37 Aligned_cols=144 Identities=17% Similarity=0.096 Sum_probs=120.0
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.++|+.|+|||||+.+|+|||||+||||+|.+++++||+|++|||+++. ++++|++||++.+....|. .+.+.++++
T Consensus 326 ~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~ 405 (722)
T 1rqg_A 326 WNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVH 405 (722)
T ss_dssp BCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHH
T ss_pred CCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999997 8999999999999887652 234556666
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++..++.....+ .++....+...|.+++..+..+.+.+.++| ++|+++.|++.+++|++.+|+|++.
T Consensus 406 R~~~~~~k~~~~--~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~i~~~~~~~n~Yi~~ 472 (722)
T 1rqg_A 406 RALTFVNRYFDG--VVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFDH 472 (722)
T ss_dssp HHHHHHHHHSTT--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--CCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 655555433221 122122345678899999999999999999 9999999999999999999999986
No 8
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.95 E-value=5e-27 Score=228.51 Aligned_cols=148 Identities=21% Similarity=0.328 Sum_probs=122.6
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHh-ccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFL-LHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll-~~~y~~~~~fs~~~l~~a~~~ 79 (255)
+++|+.++++..|||++|+|||||+.+|+|||||+||||+|.+++++||+|++|||++ +++|++|++||++.+..+.+
T Consensus 621 ~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~- 699 (810)
T 1wkb_A 621 FIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK- 699 (810)
T ss_dssp HHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHH-
T ss_pred HHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHH-
Confidence 3678999998778999999999999999999999999999999999999999999998 56899999999999988764
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHhhhhhc
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDS-IRDCISQVNIYLRG 158 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~-l~~l~~~~N~~~~~ 158 (255)
.++++++.+..+... .. +........|++++..+..+.+.+.++| ++|+++.|+.. ++.+++.+|+|++.
T Consensus 700 --~l~rl~n~~~~~~~~-~~-----~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~~l~~~~n~yi~~ 770 (810)
T 1wkb_A 700 --QIERFYELISQFAEY-EV-----KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMNDLRWYLRR 770 (810)
T ss_dssp --HHHHHHHHHHHHHTC-CC-----CSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhc-cC-----cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444321 00 0112234578899999999999999999 99999999985 47999999999976
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.94 E-value=8.4e-27 Score=217.07 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=117.2
Q ss_pred cccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHH--
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTY-- 79 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~-- 79 (255)
||++++ |. ++++.+++||||+.+|+|||||+||||+|.|++++||+|++|||+++ ++|++|++||++.+.++.+.
T Consensus 285 a~l~~~-g~-~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l 362 (524)
T 2x1l_A 285 AFLMSA-GL-PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADL 362 (524)
T ss_dssp HHHHHH-TC-CCCSCEEEECCEEECSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCC
T ss_pred HHHHHC-CC-CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHH
Confidence 566665 64 45544555599999999999999999999999999999999999998 78999999999999887642
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+.++.+++..++.+.... .++......+.|.++...+..+.+.+.++| ++|+++.|++.+++|++.+|+|++.
T Consensus 363 ~n~l~n~~~r~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~ 438 (524)
T 2x1l_A 363 ANELGNLAQRSLSMVAKNLGA--AVPDPGEFTDEDTALLAAADALLERVREHF-DVPAMHLALEAIWSVLGAANRYFSA 438 (524)
T ss_dssp CCCCHHHHHHHHHHHHHHSTT--BCCCCCCCCHHHHHHHHHHHTHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCccccchhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 122444444444333322111 111112345678899999999999999999 9999999999999999999999875
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.94 E-value=1.4e-26 Score=214.27 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=117.2
Q ss_pred cccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHH--
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTY-- 79 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~-- 79 (255)
||++++ | .++++.|+|||||+.+|+|||||+||||+|.|++++||+|++|||+++ ++|++|++||++.+..+.+.
T Consensus 270 a~l~~~-g-~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l 347 (497)
T 2csx_A 270 AFLMSL-G-YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGEL 347 (497)
T ss_dssp HHHHHH-T-CCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTC
T ss_pred HHHHHc-C-CCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHH
Confidence 566665 6 467899999999999999999999999999999999999999999998 68999999999999887642
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+.++++++..++.+...+ .++ .+.+.++...+..+.+.+.++| ++|+++.|++.++++++.+|+|++.
T Consensus 348 ~~~l~n~~~R~~~~~~~~~~~--~~~-----~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~ 418 (497)
T 2csx_A 348 ANEIGNLYSRVVNMAHKFLGG--EVS-----GARDEEYAKIAQESIKNYENYM-EKVNFYKAIEEILKFTSYLNKYVDE 418 (497)
T ss_dssp CCCCHHHHHHHHHHHHHHSTT--CBC-----CCCCTTHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCC-----chhHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 123344555554444332211 111 1235677888899999999999 9999999999999999999999875
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.93 E-value=1.1e-25 Score=211.03 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=130.0
Q ss_pred CCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHH--HHHHHHH
Q psy11866 10 NNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTY--EKLLNEF 86 (255)
Q Consensus 10 ~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~--~~~l~~~ 86 (255)
| .|+++.+++||||+.+|+|||||+||||+|.+++++||+|++|||+++ .++.+|++|+++.+....|. .+.+.++
T Consensus 320 g-~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~ 398 (564)
T 3kfl_A 320 E-LPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNL 398 (564)
T ss_dssp T-CCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHH
T ss_pred C-CCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 467888999999999999999999999999999999999999999999 68999999999999887652 2334444
Q ss_pred HHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-CC-----
Q psy11866 87 FLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG-TP----- 160 (255)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-~~----- 160 (255)
++++..++. ... +.++......+.|.+++..+..+.+.+.++| ++|+++.|+..+++|+..+|+|++. .|
T Consensus 399 ~~R~~~~~~-~~~--g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~ 474 (564)
T 3kfl_A 399 VSRCVAPKI-NVN--GMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVTENAPWKLVK 474 (564)
T ss_dssp HHHHHCTTT-STT--SBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHH-hcC--CcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHhcCChhhhc
Confidence 444433332 111 1222223445678999999999999999999 9999999999999999999999975 21
Q ss_pred -CHHHHHHHHHHHHHhhhcccccc
Q psy11866 161 -NQLLLRDIGAYVTKILTVFGCIG 183 (255)
Q Consensus 161 -~~~~l~~~~~~~~~~~~ilGi~~ 183 (255)
+...+..+...+.++++++++..
T Consensus 475 ~~~~~~~~~~~~l~~~l~~l~~lL 498 (564)
T 3kfl_A 475 MDTARLGTVLYVTMEGLRICTMFL 498 (564)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666666665543
No 12
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.93 E-value=9.3e-26 Score=220.95 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=121.0
Q ss_pred CccccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~ 79 (255)
|++|+.+++|..||.++|+| ||++. +|+|||||+||||+|.+++++||+|++|||+++++|++|++||++.+..+.+.
T Consensus 566 ~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~ 644 (917)
T 1ffy_A 566 SITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDD 644 (917)
T ss_dssp HHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHH
Confidence 46788888898888877666 99885 99999999999999999999999999999999989999999999999987654
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--HHhhhhh
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLR 157 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~--~~N~~~~ 157 (255)
.+++.+.+..+...+.........+ ........|++++..+.++.+.+.++| ++|+++.|++.+++|+. .+|.|++
T Consensus 645 ~~kl~n~~r~~l~nl~~~~~~~~~v-~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~~~l~~f~~~~l~~~Yl~ 722 (917)
T 1ffy_A 645 YRKIRNTLRFMLGNINDFNPDTDSI-PESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQEVQNFINVELSNFYLD 722 (917)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCC-CGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhccCcccccC-CccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544433321111100000001 122345678999999999999999999 99999999999999997 6888875
Q ss_pred c
Q psy11866 158 G 158 (255)
Q Consensus 158 ~ 158 (255)
.
T Consensus 723 ~ 723 (917)
T 1ffy_A 723 Y 723 (917)
T ss_dssp H
T ss_pred h
Confidence 3
No 13
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.93 E-value=1.5e-25 Score=218.18 Aligned_cols=154 Identities=20% Similarity=0.168 Sum_probs=119.4
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhccC-CCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~-y~~~~~fs~~~l~~a~~~ 79 (255)
|+++|.+++|..||.++|+|..++..+|+|||||+||||+|.|++++||+|++|||+++.+ |++|++||++.+..+.+
T Consensus 562 ~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~- 640 (821)
T 1ile_A 562 LHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR- 640 (821)
T ss_dssp HHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH-
T ss_pred HHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH-
Confidence 4678899999889999988866677899999999999999999999999999999999974 99999999999988422
Q ss_pred HHHHHHHHHHHHHHH---hhccCCCC-CccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHh
Q psy11866 80 EKLLNEFFLNVKDHI---RNLKFPAT-TVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVN 153 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N 153 (255)
+.++++++.+..+. ...... . ...........|++++..+..+.+.+.++| ++|+++.|++.|++|+ ..+|
T Consensus 641 -~~~~kl~N~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n 717 (821)
T 1ile_A 641 -DYFLTLWNVYSFFVTYANLDRPD-LKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARALRDFVVEDLSQ 717 (821)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHCCC-TTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSST
T ss_pred -HHHHHHHHHHHHHHHhhccccCC-cccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHH
Confidence 23444444433221 111000 0 000012335678899999999999999999 8999999999999999 7899
Q ss_pred hhhhc
Q psy11866 154 IYLRG 158 (255)
Q Consensus 154 ~~~~~ 158 (255)
+|++.
T Consensus 718 ~Yl~~ 722 (821)
T 1ile_A 718 WYVRR 722 (821)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 99853
No 14
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.93 E-value=2.5e-25 Score=216.46 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=121.5
Q ss_pred CccccccccCCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHH
Q psy11866 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTY 79 (255)
Q Consensus 1 ~~AQs~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~ 79 (255)
|++++.+++|+.||.++|+|..++..+|+|||||+||||+|.+++++||+|++|||+++. ++++|++|+++.+..+.+
T Consensus 499 ~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~- 577 (862)
T 1gax_A 499 MEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARN- 577 (862)
T ss_dssp HHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHH-
T ss_pred HHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHH-
Confidence 568888889988998888885445689999999999999999999999999999999986 899999999999998865
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--HHHhhhhh
Q psy11866 80 EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLR 157 (255)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~--~~~N~~~~ 157 (255)
.+++++|.++.+..... ...+ ........|++++..+..+.+.+.++| ++|+++.|++.+++|+ ..+|+|++
T Consensus 578 --f~nkl~N~~rf~~~~~~-~~~~--~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yie 651 (862)
T 1gax_A 578 --FANKLYNAARFVLLSRE-GFQA--KEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELVWSEFCDWYLE 651 (862)
T ss_dssp --HHHHHHHHHHHHHHHSS-SCCC--CBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred --HHHHHHHHHHHHHhccc-CCCC--ccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455554433222111 1011 112345678999999999999999999 9999999999999999 57999987
Q ss_pred c
Q psy11866 158 G 158 (255)
Q Consensus 158 ~ 158 (255)
.
T Consensus 652 ~ 652 (862)
T 1gax_A 652 A 652 (862)
T ss_dssp H
T ss_pred H
Confidence 5
No 15
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.92 E-value=4e-26 Score=211.36 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=122.3
Q ss_pred cccccccCCCcccceeeeeeEeee-cCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHH-
Q psy11866 3 FRFQAYFNNDSWVRYFLHSGHLTI-AGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTY- 79 (255)
Q Consensus 3 AQs~a~~~~~~~~~~~~h~g~l~~-~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~- 79 (255)
||++++ | .++++.|+|||||+. +|+|||||+||||+|.|++++||+|++|||+++ ++|++|++||++.+.++.+.
T Consensus 271 a~~~~~-g-~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~ 348 (500)
T 2d5b_A 271 TMLKAA-G-IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEAD 348 (500)
T ss_dssp HHHHHH-T-CCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHH
T ss_pred HHHHHc-C-CCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHH
Confidence 666665 6 467899999999999 999999999999999999999999999999998 68999999999999887642
Q ss_pred -HHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 80 -EKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 80 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
.+.+.++.+++.....+...+ .++.. .+.++...+.++.+.+.++| ++|+++.|++.++++++.+|+|++.
T Consensus 349 l~~~l~n~~~r~~~~~~~~~~~--~~~~~-----~~~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~ 420 (500)
T 2d5b_A 349 LADDLGNLVQRTRAMLFRFAEG--RIPEP-----VAGEELAEGTGLAGRLRPLV-RELKFHVALEEAMAYVKALNRYINE 420 (500)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTT--BCCCC-----CCCGGGGGGGGHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCCch-----hHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 112223333333322221111 11100 12445566778889999999 9999999999999999999999975
Q ss_pred CCCH-------HHHHHHHHHHHHhhhccccc
Q psy11866 159 TPNQ-------LLLRDIGAYVTKILTVFGCI 182 (255)
Q Consensus 159 ~~~~-------~~l~~~~~~~~~~~~ilGi~ 182 (255)
.... ..+..+...+.+.++++.+.
T Consensus 421 ~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~l 451 (500)
T 2d5b_A 421 KKPWELFKKEPEEARAVLYRVVEGLRIASIL 451 (500)
T ss_dssp HCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11233445555555555543
No 16
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.92 E-value=4.9e-25 Score=205.62 Aligned_cols=144 Identities=20% Similarity=0.187 Sum_probs=104.4
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHH--HHHHHHHHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTY--EKLLNEFFL 88 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~--~~~l~~~~~ 88 (255)
.++++.+++||||+.+|+|||||+||||+|.|++++||+|++|||+++ .++.+|++|+++.+.+..+. .+.+.++.+
T Consensus 303 ~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 303 LPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCCSCEEEECCEEC------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999999999999999999999999999 58999999999999876542 123344444
Q ss_pred HHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 89 NVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++..++.+...+ ..+......+.|++++..+.++.+.+.++| ++|+++.|+..+++|++.+|+|++.
T Consensus 383 R~~~~~~~~~~~--~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~~ 449 (536)
T 4dlp_A 383 RSLSMIAKNCEG--KVPQPGAFSEADKAILDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFAG 449 (536)
T ss_dssp HHHHHHHHHSTT--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 444443332221 122223446689999999999999999999 9999999999999999999999976
No 17
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.90 E-value=4.7e-23 Score=200.16 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=98.8
Q ss_pred cccccCCCccCHHHHHhhcChhHHHHHHhcc-CCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q psy11866 30 KMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFE 108 (255)
Q Consensus 30 KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (255)
|||||+||||+|.|++++||+|++|||+++. +|++|++||++.++.+.+ .++++++.+......... .. ....
T Consensus 639 KMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~r---fl~rlwn~~~~~~~~~~~--~~-~~~~ 712 (880)
T 4arc_A 639 KMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANR---FLKRVWKLVYEHTAKGDV--AA-LNVD 712 (880)
T ss_dssp ECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH---HHHHHHHHHHHHHHTCCC--CC-CCST
T ss_pred cccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHH---HHHHHHHHHHHHHhcccc--cc-cccc
Confidence 9999999999999999999999999999998 899999999999998864 566666665544332110 00 0112
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhh
Q psy11866 109 KWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL 156 (255)
Q Consensus 109 ~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~ 156 (255)
.....+++++..+.++.+.|.++|+++|+++.|++.+++|+..+|+|.
T Consensus 713 ~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~ 760 (880)
T 4arc_A 713 ALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP 760 (880)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh
Confidence 345678999999999999999999558999999999999999988874
No 18
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.89 E-value=3.7e-23 Score=193.83 Aligned_cols=139 Identities=20% Similarity=0.196 Sum_probs=109.5
Q ss_pred CcccceeeeeeEeeecCccccccCCCccCHHHHHhhcChhHHHHHHhcc-CCC-CCcccChhHHHHHHHHHHHH---HHH
Q psy11866 12 DSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH-AWH-QTLDYSDNTMEMAVTYEKLL---NEF 86 (255)
Q Consensus 12 ~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~-~y~-~~~~fs~~~l~~a~~~~~~l---~~~ 86 (255)
.++|+.++.||||+.+|+|||||+||||+|.|++++||+|++|||+++. +.. +|++|+++.+....+. +.+ .++
T Consensus 327 ~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~-~l~~~l~n~ 405 (560)
T 3h99_A 327 FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNA-DIVNKVVNL 405 (560)
T ss_dssp BCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHH-HCCCCCTHH
T ss_pred CCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHH-HHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999987 456 7999999998765432 222 233
Q ss_pred HHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc
Q psy11866 87 FLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG 158 (255)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~ 158 (255)
++++..++.+...+ .++. ...|.+++..+..+.+.+.++| ++|+++.|+..+++|++.+|+|++.
T Consensus 406 ~~R~~~~~~~~~~~--~~~~----~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l~~~~n~Yi~~ 470 (560)
T 3h99_A 406 ASRNAGFINKRFDG--VLAS----ELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVDE 470 (560)
T ss_dssp HHTTHHHHHHHSTT--BCCS----SCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCC----ccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332211 1111 1247789999999999999999 9999999999999999999999875
No 19
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.88 E-value=4.5e-22 Score=194.17 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=107.2
Q ss_pred ccccccCCCccCHHHHHhhcChhHHHHHHhc-cCCCCCcccChhHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q psy11866 29 CKMSKSLKNFITIQDALNKHTARQLRLAFLL-HAWHQTLDYSDNTMEMAVTYEKLLNEFFLNVKDHIRNL-KFPATTVSS 106 (255)
Q Consensus 29 ~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~-~~y~~~~~fs~~~l~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 106 (255)
+|||||+||||+|.+++++||+|++|||+++ +++++|++||++.+..+.+ .++++++.+....... ... ... .
T Consensus 636 ~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~---~l~Rl~n~~~~~~~~~~~~~-~~~-~ 710 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR---FLNRIYRRVAEDREALLETS-GVF-Q 710 (878)
T ss_dssp EECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH---HHHHHHHHHHHHHHHHHTCC-CCC-C
T ss_pred HHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHH---HHHHHHHHHHHHHhcccccc-ccc-C
Confidence 9999999999999999999999999999998 6899999999999998864 4445554444332211 000 111 1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHhhh
Q psy11866 107 FEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILT 177 (255)
Q Consensus 107 ~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~~~~~~~l~~~~~~~~~~~~ 177 (255)
.......|++++..+.++.+.+.++| ++|+++.|++.+++|+...|+|.........+..++..+..++.
T Consensus 711 ~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~l~~f~~~l~k~~~~~~~~~~l~~~l~~l~~LLa 780 (878)
T 2v0c_A 711 AEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLF 780 (878)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHc
Confidence 22345678999999999999999999 99999999999999999999986531111334444444444444
No 20
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.87 E-value=6.3e-22 Score=186.23 Aligned_cols=171 Identities=11% Similarity=0.104 Sum_probs=133.7
Q ss_pred CCCcc-cceeeee--eEeeecCccccccCCCccCHHHHHhh-------------------------cChhHHHHHHhccC
Q psy11866 10 NNDSW-VRYFLHS--GHLTIAGCKMSKSLKNFITIQDALNK-------------------------HTARQLRLAFLLHA 61 (255)
Q Consensus 10 ~~~~~-~~~~~h~--g~l~~~g~KMSKSlGN~i~~~d~l~~-------------------------~~~d~lR~~ll~~~ 61 (255)
| .|| ++.|.|. |||+++|+|||||+||||++.|++++ ||+|++|||+|+.+
T Consensus 372 G-~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~ 450 (592)
T 1iq0_A 372 G-YPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTE 450 (592)
T ss_dssp T-CHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred C-CCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcC
Confidence 5 467 6779888 66999999999999999999999999 99999999999999
Q ss_pred CCCCcccChhHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q psy11866 62 WHQTLDYSDNTMEMAVT-YEKLLNEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRS 140 (255)
Q Consensus 62 y~~~~~fs~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~ 140 (255)
+++|++|+++.+....+ ....+++.+.++..++++.... . .+...-..+.+..+...+..+++.+.+++ ++++++.
T Consensus 451 ~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~-~-~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~ 527 (592)
T 1iq0_A 451 PKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEW-G-APDLSQATPYERALALDLLDFEEAVLEAA-EERTPHV 527 (592)
T ss_dssp TTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCC-C-CCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHH
T ss_pred CCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhccc-C-CCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHH
Confidence 99999999999987654 3346777778888887765321 1 11111124557788888999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhhhhcC-------C------C-----HHHHHHHHHHHHHhhhccccccC
Q psy11866 141 ALDSIRDCISQVNIYLRGT-------P------N-----QLLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 141 al~~l~~l~~~~N~~~~~~-------~------~-----~~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
++..++++++.+|+|++.. + . ..++..+...+...+++|||...
T Consensus 528 ~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 528 LAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999998763 2 1 12346788888999999999653
No 21
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.84 E-value=1.6e-20 Score=171.13 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=128.1
Q ss_pred cCCCcccc-eeeeeeEeee--cCc--cccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChhHHHHHHHHHH--
Q psy11866 9 FNNDSWVR-YFLHSGHLTI--AGC--KMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEMAVTYEK-- 81 (255)
Q Consensus 9 ~~~~~~~~-~~~h~g~l~~--~g~--KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~~l~~a~~~~~-- 81 (255)
.|. ++++ ..+|+|++++ +|+ |||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+....+...
T Consensus 260 lG~-~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~ 338 (464)
T 3fnr_A 260 LGF-DSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVY 338 (464)
T ss_dssp TTC-CGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHH
T ss_pred cCC-CccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHH
Confidence 453 4455 5678899865 785 9999999999999999999999999999999999999999999976433111
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcc--ccccCCHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-
Q psy11866 82 LLNEFFLNVKDHIRNLKFPATTVS--SFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG- 158 (255)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~al~dd~~~~~al~~l~~l~~~~N~~~~~- 158 (255)
.++..++++.+++++........+ ....+.+.+.+++..+..+++.+.+++ ++++++.++..+++|+...|.|++.
T Consensus 339 YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~-~~~ep~~i~~yL~~La~~~n~fY~~~ 417 (464)
T 3fnr_A 339 YINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAF-EARALQKIPDYLKNLAANFHKFYNEN 417 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHH-HHTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566778777766432100111 122344458899999999999999998 9999999999999999999999876
Q ss_pred ----CCCH-----HHHHHHHHHHHHhhhccccccC
Q psy11866 159 ----TPNQ-----LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 159 ----~~~~-----~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
.++. ..+-.+. .+...|++|||..+
T Consensus 418 ~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 418 KVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp CCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred cCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence 1121 1233333 88899999999765
No 22
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.82 E-value=1.2e-20 Score=178.31 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=136.3
Q ss_pred CCCcc-cceeeee--eEeeecCccccccCC--CccCHHHHHhh---------------------------cChhHHHHHH
Q psy11866 10 NNDSW-VRYFLHS--GHLTIAGCKMSKSLK--NFITIQDALNK---------------------------HTARQLRLAF 57 (255)
Q Consensus 10 ~~~~~-~~~~~h~--g~l~~~g~KMSKSlG--N~i~~~d~l~~---------------------------~~~d~lR~~l 57 (255)
| .|+ ++.|.|. |||+++|+|||||+| |||++.|++++ +|++++|||+
T Consensus 402 G-~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~ 480 (629)
T 2zue_A 402 G-FEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNL 480 (629)
T ss_dssp T-CHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHH
Confidence 5 467 7789998 779999999999999 99999999999 9999999999
Q ss_pred hccCCCCCcccChhHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCC-c-----c---ccccCCHHHHHHHHHHHHHHHH
Q psy11866 58 LLHAWHQTLDYSDNTMEMAVT-YEKLLNEFFLNVKDHIRNLKFPATT-V-----S---SFEKWTQADLELSTRFIQTKNN 127 (255)
Q Consensus 58 l~~~y~~~~~fs~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~~~~l~~~l~~~~~~ 127 (255)
|+.+++++++|+++.+.+..+ .-..+++.+.|+.+++++.... .. . + ...-..+.+..+...+..+++.
T Consensus 481 L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~-~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~ 559 (629)
T 2zue_A 481 IKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEE-GIKVDPETLFKNADFTKLSERERELVIMLSKFPRI 559 (629)
T ss_dssp HSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcc-ccccccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999976543 2346677777877776653211 10 0 0 0111245677888999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhhhhc-----C-CCH-----HHHHHHHHHHHHhhhccccccC
Q psy11866 128 VHAALCDNMDTRSALDSIRDCISQVNIYLRG-----T-PNQ-----LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 128 ~~~al~dd~~~~~al~~l~~l~~~~N~~~~~-----~-~~~-----~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
+.+++ ++++++.++..++++++.+|.|++. . +.. .++.++...+...|++|||...
T Consensus 560 v~~a~-~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 560 VEQAG-KDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHH-HTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99998 9999999999999999999999875 1 111 2347788889999999999753
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.70 E-value=7.9e-17 Score=151.39 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=134.7
Q ss_pred CCCcccceeeeeeEeeecCccccccCCCccCHHHHHhhcCh----------------------------hHHHHHHhccC
Q psy11866 10 NNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTA----------------------------RQLRLAFLLHA 61 (255)
Q Consensus 10 ~~~~~~~~~~h~g~l~~~g~KMSKSlGN~i~~~d~l~~~~~----------------------------d~lR~~ll~~~ 61 (255)
| .||+++|.|.++.+++ |||||+||||+++|++++++. .++|||+|+++
T Consensus 390 G-~~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~ 466 (607)
T 1f7u_A 390 G-FEWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGK 466 (607)
T ss_dssp T-CGGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSC
T ss_pred C-CCcCcEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccC
Confidence 6 4799999999997776 699999999999999998833 47999999999
Q ss_pred CCCCcccChhHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCc----cccccC-CHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11866 62 WHQTLDYSDNTMEMAVT-YEKLLNEFFLNVKDHIRNLKFPATTV----SSFEKW-TQADLELSTRFIQTKNNVHAALCDN 135 (255)
Q Consensus 62 y~~~~~fs~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~l~~~l~~~~~~~~~al~dd 135 (255)
|+++++|+++.+..... +-..++..+.++.+++++.... ... ...... ++.+..+...+..+++.+..+. ++
T Consensus 467 ~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~-~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~ 544 (607)
T 1f7u_A 467 RINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGI-TQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KT 544 (607)
T ss_dssp TTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTS-CHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HH
T ss_pred CCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCC-CcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 99999999999987664 3347888888998888765210 000 011112 4567888889999999999998 89
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhc----CCCH-------HHHHHHHHHHHHhhhccccccC
Q psy11866 136 MDTRSALDSIRDCISQVNIYLRG----TPNQ-------LLLRDIGAYVTKILTVFGCIGD 184 (255)
Q Consensus 136 ~~~~~al~~l~~l~~~~N~~~~~----~~~~-------~~l~~~~~~~~~~~~ilGi~~~ 184 (255)
++++..+..+++|+...|.|.+. ..+. .++..+...+...|++|||...
T Consensus 545 ~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 545 HEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999998876 1121 2456778888899999999753
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.58 E-value=9.4e-16 Score=142.40 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=53.6
Q ss_pred ccCCCcccceeeeeeEeeec--CccccccCCCccCHHHHHhhcChhHHHHHHhccCCCCCcccChh-HHHHHHH
Q psy11866 8 YFNNDSWVRYFLHSGHLTIA--GCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDN-TMEMAVT 78 (255)
Q Consensus 8 ~~~~~~~~~~~~h~g~l~~~--g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~fs~~-~l~~a~~ 78 (255)
++|..| | +|+|+|||+.+ |+|||||+||+|+|.++++.|+||++|||+++.+|+++++||++ .+.++.+
T Consensus 257 alG~~~-p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~~ 328 (523)
T 1irx_A 257 VYGKEA-P-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYD 328 (523)
T ss_dssp HHCCCC-C-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHHH
T ss_pred HhCCCC-C-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCCCceeCcchhHHHHHH
Confidence 567433 4 79999999998 89999999999999999999999999999999999999999999 8888764
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.06 E-value=3.7e-11 Score=110.61 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=57.6
Q ss_pred ccc--ccccCCCcccceeeeeeEeeecCccccccCCC---------------ccCHHHHHhh-cChhHHHHHHhccCC-C
Q psy11866 3 FRF--QAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKN---------------FITIQDALNK-HTARQLRLAFLLHAW-H 63 (255)
Q Consensus 3 AQs--~a~~~~~~~~~~~~h~g~l~~~g~KMSKSlGN---------------~i~~~d~l~~-~~~d~lR~~ll~~~y-~ 63 (255)
+|+ .+++| .++|++| |+|+|+++|+|||||+|| +.|+.++... |.|+++|.|+++.+| +
T Consensus 302 ~Q~~l~~alG-~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~ 379 (553)
T 3aii_A 302 KQEYLYRHLG-WEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKI 379 (553)
T ss_dssp HHHHHHHHHT-CCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcC-CCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 455 45567 5789887 999999999999999998 8899999975 999999999999998 6
Q ss_pred CCcccChhHHHHHHH
Q psy11866 64 QTLDYSDNTMEMAVT 78 (255)
Q Consensus 64 ~~~~fs~~~l~~a~~ 78 (255)
++.+|+++.|..+.+
T Consensus 380 ~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 380 ADSTMSWKKIYGLNR 394 (553)
T ss_dssp SCBCCCHHHHHHHHH
T ss_pred ccccccHHHHHHHHH
Confidence 899999999988763
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.70 E-value=6e-09 Score=96.02 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=58.8
Q ss_pred ccc---ccccCCCc-ccceeeeeeEeeecCccccccCCC---------------ccCHHHHHhh-cChhHHHHHHhccCC
Q psy11866 3 FRF---QAYFNNDS-WVRYFLHSGHLTIAGCKMSKSLKN---------------FITIQDALNK-HTARQLRLAFLLHAW 62 (255)
Q Consensus 3 AQs---~a~~~~~~-~~~~~~h~g~l~~~g~KMSKSlGN---------------~i~~~d~l~~-~~~d~lR~~ll~~~y 62 (255)
+|+ +|+ | .+ +|++| |+|||+++|.|||||+|| ++|+.++.+. |.|+++|.|+++.+|
T Consensus 239 ~q~~l~~al-g-~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~ 315 (553)
T 1qtq_A 239 LYDWVLDNI-T-IPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 315 (553)
T ss_dssp HHHHHHHTS-C-CSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc-C-CCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCC
Confidence 565 444 5 44 68888 999999999999999997 8899999975 999999999999998
Q ss_pred CCCcc-cChhHHHHHH
Q psy11866 63 HQTLD-YSDNTMEMAV 77 (255)
Q Consensus 63 ~~~~~-fs~~~l~~a~ 77 (255)
....+ ++...+++..
T Consensus 316 s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 316 TKQDNTIEMASLESCI 331 (553)
T ss_dssp CSSCCCBCHHHHHHHH
T ss_pred CCCccccchhhHHHHH
Confidence 76544 6777776654
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.38 E-value=1.7e-07 Score=90.16 Aligned_cols=69 Identities=14% Similarity=-0.024 Sum_probs=55.4
Q ss_pred ccccCCCcc-cceeeeeeEeeecCccccccCCC---------------ccCHHHHHhh-cChhHHHHHHhccCCCC-Ccc
Q psy11866 6 QAYFNNDSW-VRYFLHSGHLTIAGCKMSKSLKN---------------FITIQDALNK-HTARQLRLAFLLHAWHQ-TLD 67 (255)
Q Consensus 6 ~a~~~~~~~-~~~~~h~g~l~~~g~KMSKSlGN---------------~i~~~d~l~~-~~~d~lR~~ll~~~y~~-~~~ 67 (255)
+|+ | .+. |++| |+|||.++|.|||||+|| ++|+.++.+. |.|+++|.|+++.+|.. +..
T Consensus 285 ~al-G-~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~ 361 (851)
T 2hz7_A 285 EKL-N-FDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRT 361 (851)
T ss_dssp HHT-T-CSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEE
T ss_pred HHc-C-CCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCccc
Confidence 443 5 455 8888 889999999999999987 7789999965 99999999999999864 334
Q ss_pred cChhHHHHHH
Q psy11866 68 YSDNTMEMAV 77 (255)
Q Consensus 68 fs~~~l~~a~ 77 (255)
+++..++...
T Consensus 362 ~e~~~le~~~ 371 (851)
T 2hz7_A 362 VDIAVYENAV 371 (851)
T ss_dssp ECHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 6777776543
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.21 E-value=1.4e-06 Score=79.85 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=45.7
Q ss_pred ccCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCC
Q psy11866 8 YFNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQ 64 (255)
Q Consensus 8 ~~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~ 64 (255)
++| .|.| .|.|.++ ++.+|+|||||.||+ ++.++.+ +|.|+++|.|++..+|..
T Consensus 226 alg-~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~ 281 (492)
T 2cfo_A 226 ALG-ATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSP 281 (492)
T ss_dssp HTT-CCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCC
T ss_pred HcC-CCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 456 4556 7899999 689999999999997 8999987 599999999999877653
No 29
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.40 E-value=0.00014 Score=66.53 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=43.5
Q ss_pred cCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCC
Q psy11866 9 FNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQ 64 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~ 64 (255)
.| .++| .|.|.++ ++.+|+||||+.|++ ++.++++ .|.|++++.|+...++..
T Consensus 242 LG-~~~p-~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~ 296 (481)
T 2o5r_A 242 FE-KAPP-VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSH 296 (481)
T ss_dssp TT-CCCC-EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCC
T ss_pred cC-CCCC-eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 35 3556 4899998 578999999999998 8999998 599999999888766543
No 30
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.30 E-value=0.00028 Score=64.22 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=46.6
Q ss_pred cCCCcccceeeeeeE-eeecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCCC---cccChhHH
Q psy11866 9 FNNDSWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQT---LDYSDNTM 73 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~~---~~fs~~~l 73 (255)
.| .+.| .|.|.++ ++.+|.||||+.||+ ++.++.+ +|.|+++|-|+..-+|..+ --|+.+.+
T Consensus 223 lg-~~~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el 289 (468)
T 1j09_A 223 FG-WEAP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEF 289 (468)
T ss_dssp HT-CCCC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHH
T ss_pred cC-CCCC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHH
Confidence 35 3446 4678888 478999999999998 8999887 5999999999988776532 23554443
No 31
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.00046 Score=59.86 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=33.3
Q ss_pred eeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhcc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~ 60 (255)
+.+|+.++ ..+|+|||||.||.|.+.| +|+++|..+.+.
T Consensus 200 ~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 200 VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 46788886 6789999999999999987 599999988764
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.01 E-value=0.00085 Score=61.33 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.4
Q ss_pred cCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC
Q psy11866 9 FNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH 63 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~ 63 (255)
+| .|.| .|.|...+ ..+|+||||+.|+ +++.++.+ .|.|++++.|+...++.
T Consensus 235 LG-~~~P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s 288 (488)
T 3afh_A 235 FG-WEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWR 288 (488)
T ss_dssp HT-CCCC-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred cC-CCCC-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 45 3445 57888885 7899999999999 68999987 59999999999887664
No 33
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.86 E-value=0.00081 Score=62.89 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.3
Q ss_pred cCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC
Q psy11866 9 FNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH 63 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~ 63 (255)
+| .|.| .|.|.+.+ ..+|.||||+.|+ +++.++.+ +|.|+++|.|+...+|.
T Consensus 339 lg-~~~P-~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~s 392 (592)
T 3al0_C 339 FG-WEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWR 392 (592)
T ss_dssp TT-CCCC-BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTBC
T ss_pred hC-CCCC-eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 35 3446 46788885 7899999999999 68999987 59999999999886664
No 34
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=96.64 E-value=0.00031 Score=60.25 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=15.3
Q ss_pred ccc--cccCCCcccceeeeeeEe-eecCccccccCCCccCHH
Q psy11866 4 RFQ--AYFNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQ 42 (255)
Q Consensus 4 Qs~--a~~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~ 42 (255)
|.. +++| .|.|++ +|.+++ +.+|+|||||.||+ ++.
T Consensus 201 q~~l~~alG-~~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~ 239 (298)
T 1nzj_A 201 QISLYQLFG-WKVPDY-IHLPLALNPQGAKLSKQNHAP-ALP 239 (298)
T ss_dssp HHHHHHHHT-CCCCEE-EEECBCCC--------------CCC
T ss_pred HHHHHHHcC-CCCCeE-EEeeeeECCCCCcccccCCcc-Chh
Confidence 444 5567 567876 799997 89999999999997 443
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.57 E-value=0.004 Score=56.96 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=39.6
Q ss_pred cccceeeeeeE-eeecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC
Q psy11866 13 SWVRYFLHSGH-LTIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH 63 (255)
Q Consensus 13 ~~~~~~~h~g~-l~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~ 63 (255)
|.| .+.|... +..+|.||||+.|+ +++.++.+ +|.|+++|.|+..-++.
T Consensus 240 ~~P-~~~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s 290 (498)
T 2ja2_A 240 RIP-KFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWS 290 (498)
T ss_dssp CCC-EEEEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCC
T ss_pred CCC-eEEEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCC
Confidence 445 4567777 46899999999999 58999887 59999999999886654
No 36
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.44 E-value=0.0065 Score=53.94 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=30.5
Q ss_pred ceeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 16 RYFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 16 ~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
.+-+++.+| ..+|.|||||.||.|.+.|- .-+|+.++=++++
T Consensus 278 ~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 278 CVGFTVPLLTDSSGAKFGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp CEEEECCCCBCTTCCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred ccccccccCcCCchhhccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 355677775 57999999999999987763 2466666665654
No 37
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.24 E-value=0.0047 Score=53.42 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred eeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 18 FLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 18 ~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
-+++..| ..+|+|||||.||.|.+.| ++.+|+.++=++.+
T Consensus 222 ~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 222 GLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp EEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred eeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 3454554 4589999999999999888 67788888876664
No 38
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.22 E-value=0.0083 Score=53.94 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=31.3
Q ss_pred ceeeeeeEe-eecCc-cccccCCCccCHHHHHhhcChhHHHHHHhcc
Q psy11866 16 RYFLHSGHL-TIAGC-KMSKSLKNFITIQDALNKHTARQLRLAFLLH 60 (255)
Q Consensus 16 ~~~~h~g~l-~~~g~-KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~ 60 (255)
.+.+|+..| ..+|. |||||.||.|++.| +|+.++=++.+.
T Consensus 216 ~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 216 QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 355676665 56896 99999999999887 888888777664
No 39
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.19 E-value=0.0063 Score=53.38 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=19.6
Q ss_pred eeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
+.+++..| ..+|+|||||.||.|.+.| ++-+|+.++=++.+
T Consensus 240 ~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 240 FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 44666665 5789999999999998887 35678888877765
No 40
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.09 E-value=0.0068 Score=52.82 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=28.4
Q ss_pred eeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhcc
Q psy11866 20 HSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60 (255)
Q Consensus 20 h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~ 60 (255)
|+..| ..+|.|||||.||.|.+.| +|+.++=.+.+.
T Consensus 194 ~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 194 RVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp CSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred cccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 44443 5689999999999998887 788888777764
No 41
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.03 E-value=0.0083 Score=53.70 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=28.0
Q ss_pred eeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
+-+++..| ..+|+|||||.||.|++.|- +-+|+.++=++++
T Consensus 216 ~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 257 (419)
T 2ts1_A 216 FGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWIN 257 (419)
T ss_dssp EEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHHT
T ss_pred eecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 45666665 57999999999999977652 3455555554444
No 42
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.95 E-value=0.006 Score=52.76 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=24.0
Q ss_pred eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 25 TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 25 ~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
..+|+|||||.||.|.+.| +|+.++=.+.+
T Consensus 187 ~l~G~KMSKS~~n~I~L~d-----~p~~i~~KI~~ 216 (322)
T 3tzl_A 187 GTDGAKMSKSYQNTIDIFS-----SEKTLKKQISS 216 (322)
T ss_dssp CTTSSBCCGGGTCCCBSSC-----CHHHHHHHHHT
T ss_pred CCCCCcCCCCCCCceecCC-----CHHHHHHHHHh
Confidence 5689999999999998775 67777766654
No 43
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.94 E-value=0.0094 Score=53.41 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=27.6
Q ss_pred eeeeeeEe-eecCccccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
+-+++..| ..+|.|||||.||.|++.|- +-+|+.++=++++
T Consensus 217 ~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~~ 258 (420)
T 1jil_A 217 YGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWIN 258 (420)
T ss_dssp EEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred eEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 44666665 57899999999999977652 3355555544443
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=94.89 E-value=0.052 Score=49.43 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=45.0
Q ss_pred cCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCCCC--cccChhHHH
Q psy11866 9 FNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWHQT--LDYSDNTME 74 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~~~--~~fs~~~l~ 74 (255)
.| .+.| .+.|...+ ..+|.||||+.|. +++.++.+ +|.|++++-|++.-++..+ --||.+.+.
T Consensus 244 LG-~~~P-~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli 310 (490)
T 4g6z_A 244 LG-GEVP-VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFV 310 (490)
T ss_dssp TT-CCCC-EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHH
T ss_pred cC-CCCC-eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHH
Confidence 35 3445 46787774 5689999999987 78888875 5999999999987665432 235555443
No 45
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.79 E-value=0.01 Score=53.26 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=29.3
Q ss_pred eeeeeeEe-eecCccccccCCC-ccCHHHHHhhcChhHHHHHHhc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKN-FITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN-~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
+-+++..| ..+|+|||||.|| .|++.| ++-+|+.++=++++
T Consensus 217 ~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 217 HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 44555554 5689999999999 888776 24567666666655
No 46
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.86 E-value=0.012 Score=51.81 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=23.9
Q ss_pred eeeeeeEe-eecCccccccCCC-ccCHHHHHhhcChhHHHHHHhccCCCCCcc
Q psy11866 17 YFLHSGHL-TIAGCKMSKSLKN-FITIQDALNKHTARQLRLAFLLHAWHQTLD 67 (255)
Q Consensus 17 ~~~h~g~l-~~~g~KMSKSlGN-~i~~~d~l~~~~~d~lR~~ll~~~y~~~~~ 67 (255)
..+|+.++ ..+|+|||||.|| .|.+.|= |+.++=.+.+ .+..+.+
T Consensus 208 ~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~-A~td~~~ 254 (372)
T 1n3l_A 208 VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK-AFCEPGN 254 (372)
T ss_dssp EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT-CCCCTTC
T ss_pred EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH-ccCCCCC
Confidence 45677765 6789999999999 6877653 7777666554 4444433
No 47
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=93.29 E-value=0.022 Score=49.06 Aligned_cols=27 Identities=41% Similarity=0.582 Sum_probs=20.5
Q ss_pred eeeeeeEe-eecC-ccccccCCCccCHHH
Q psy11866 17 YFLHSGHL-TIAG-CKMSKSLKNFITIQD 43 (255)
Q Consensus 17 ~~~h~g~l-~~~g-~KMSKSlGN~i~~~d 43 (255)
+.+|+..| ..+| +|||||.||.|++.|
T Consensus 189 ~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 189 VCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp EEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred EEeeccccccCCcccccCCCCcceecCCC
Confidence 44666664 5679 799999999997654
No 48
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.09 E-value=0.02 Score=50.06 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=26.7
Q ss_pred cceee-eeeEe-eecCc-cccccCCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 15 VRYFL-HSGHL-TIAGC-KMSKSLKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 15 ~~~~~-h~g~l-~~~g~-KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
|...+ |+..| ..+|. |||||.||.|.+.|= |+.++=.+.+
T Consensus 197 P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 197 PQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp CEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred CeeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 44444 34443 46897 999999998876653 6666666654
No 49
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.03 E-value=0.02 Score=49.80 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.1
Q ss_pred eecC-ccccccCCCccCHHHHHhhcChhHHHHHHhcc
Q psy11866 25 TIAG-CKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60 (255)
Q Consensus 25 ~~~g-~KMSKSlGN~i~~~d~l~~~~~d~lR~~ll~~ 60 (255)
..+| +|||||.||.|.+.| +|+.++=.+.+.
T Consensus 189 gldG~~KMSKS~~n~I~L~d-----~p~~i~~Ki~~a 220 (337)
T 2el7_A 189 GIDGKAKMSKSLGNTIGLLE-----PEESIWQKIQHL 220 (337)
T ss_dssp CTTSSSBCCTTTTCCCBSSS-----CHHHHHHHHHTC
T ss_pred CCCCccccCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 5689 999999999988765 377777666653
No 50
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.025 Score=50.23 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=16.8
Q ss_pred eeeeeeEe-eec-CccccccCCCc-cCHHHHHhhcChhHHHHHHh
Q psy11866 17 YFLHSGHL-TIA-GCKMSKSLKNF-ITIQDALNKHTARQLRLAFL 58 (255)
Q Consensus 17 ~~~h~g~l-~~~-g~KMSKSlGN~-i~~~d~l~~~~~d~lR~~ll 58 (255)
..+|+.+| ..+ |+|||||.||. |.+.| +|+.++=-+.
T Consensus 212 ~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~ 251 (394)
T 2dlc_X 212 AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKIN 251 (394)
T ss_dssp EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHH
T ss_pred EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHH
Confidence 55677775 577 99999999996 87654 2555554444
No 51
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=92.00 E-value=0.059 Score=47.64 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=25.3
Q ss_pred eeeeeeEe-eecCc-ccccc-CCCccCHHHHHhhcChhHHHHHHh
Q psy11866 17 YFLHSGHL-TIAGC-KMSKS-LKNFITIQDALNKHTARQLRLAFL 58 (255)
Q Consensus 17 ~~~h~g~l-~~~g~-KMSKS-lGN~i~~~d~l~~~~~d~lR~~ll 58 (255)
..+|+.+| ..+|. ||||| .||.|.+.| +|+.++=-+.
T Consensus 254 ~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~ 293 (386)
T 3hzr_A 254 TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKIN 293 (386)
T ss_dssp EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHH
T ss_pred eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHH
Confidence 45676765 46885 99999 899997655 4555554333
No 52
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=91.89 E-value=0.044 Score=48.64 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=13.7
Q ss_pred eeeeeeEe-eecC--ccccccCCCccCHHHHHhhcChhHHHH
Q psy11866 17 YFLHSGHL-TIAG--CKMSKSLKNFITIQDALNKHTARQLRL 55 (255)
Q Consensus 17 ~~~h~g~l-~~~g--~KMSKSlGN~i~~~d~l~~~~~d~lR~ 55 (255)
..+|+.+| ..+| .|||||.||.|.+.| +|+.++=
T Consensus 254 ~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~k 290 (395)
T 3i05_A 254 AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKD 290 (395)
T ss_dssp EEEEECCCCCC-------------CCBTTC-----CHHHHHH
T ss_pred eeeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHH
Confidence 34666665 5688 799999999997655 4555543
No 53
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.21 E-value=0.061 Score=46.52 Aligned_cols=18 Identities=44% Similarity=0.379 Sum_probs=14.5
Q ss_pred eecC--ccccccCCC-c--cCHH
Q psy11866 25 TIAG--CKMSKSLKN-F--ITIQ 42 (255)
Q Consensus 25 ~~~g--~KMSKSlGN-~--i~~~ 42 (255)
..+| +|||||.|| . |.+.
T Consensus 185 gl~G~~~KMSKS~~n~~~~I~L~ 207 (328)
T 1i6k_A 185 SLVDPTKKMSKSDPNPKAYITLL 207 (328)
T ss_dssp CSSCTTSBCCTTCSCGGGCCBTT
T ss_pred CCCCCccCCCCCCCCcCceeeec
Confidence 5678 899999999 5 7554
No 54
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=90.11 E-value=0.1 Score=45.95 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=18.9
Q ss_pred eeeeeeEee-e-cCc-cccccC-CCccCHH
Q psy11866 17 YFLHSGHLT-I-AGC-KMSKSL-KNFITIQ 42 (255)
Q Consensus 17 ~~~h~g~l~-~-~g~-KMSKSl-GN~i~~~ 42 (255)
+.+|+.+|. + +|. |||||. ||.|.+.
T Consensus 231 ~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 231 VILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp EEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred eEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 457777764 3 784 999999 4788754
No 55
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=89.58 E-value=0.07 Score=46.53 Aligned_cols=19 Identities=47% Similarity=0.499 Sum_probs=15.2
Q ss_pred eecC--ccccccCCC---ccCHHH
Q psy11866 25 TIAG--CKMSKSLKN---FITIQD 43 (255)
Q Consensus 25 ~~~g--~KMSKSlGN---~i~~~d 43 (255)
..+| +|||||.|| .|.+.|
T Consensus 195 gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 195 DLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp CSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred CCCCcchhcCCCCCCCCceEeecC
Confidence 5577 899999999 786554
No 56
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=89.54 E-value=0.071 Score=47.25 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=9.2
Q ss_pred eeeeeeEe-eecC--ccccccCCC-ccCHH
Q psy11866 17 YFLHSGHL-TIAG--CKMSKSLKN-FITIQ 42 (255)
Q Consensus 17 ~~~h~g~l-~~~g--~KMSKSlGN-~i~~~ 42 (255)
+.+|+.++ ..+| .|||||.+| .|.+.
T Consensus 250 ~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~ 279 (393)
T 3hv0_A 250 SSIHSIFLPSLQGSQTKMSASVQNSSIFVN 279 (393)
T ss_dssp EEEEECCCCC-------------CCCCBTT
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCeEecc
Confidence 34676665 4688 799999998 67654
No 57
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=88.99 E-value=0.1 Score=46.85 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=19.3
Q ss_pred eeeeEe-eecC--ccccccCCC-ccCHHH
Q psy11866 19 LHSGHL-TIAG--CKMSKSLKN-FITIQD 43 (255)
Q Consensus 19 ~h~g~l-~~~g--~KMSKSlGN-~i~~~d 43 (255)
+++.+| ..+| .|||||.|| .|.+.|
T Consensus 288 l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 288 LHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred eecccccCCCCCccccCCCCCCCeeeccC
Confidence 566664 5788 899999999 787654
No 58
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=87.95 E-value=0.71 Score=42.28 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=44.0
Q ss_pred cCCCcccceeeeeeEe-eecCccccccCCCccCHHHHHh-hcChhHHHHHHhccCCC--C-CcccChhHHH
Q psy11866 9 FNNDSWVRYFLHSGHL-TIAGCKMSKSLKNFITIQDALN-KHTARQLRLAFLLHAWH--Q-TLDYSDNTME 74 (255)
Q Consensus 9 ~~~~~~~~~~~h~g~l-~~~g~KMSKSlGN~i~~~d~l~-~~~~d~lR~~ll~~~y~--~-~~~fs~~~l~ 74 (255)
.| .|.|. |.|+..+ ..+|+|+||+.|. .++.+..+ +|-|+++.=|++.-+|. . .--||.+.+.
T Consensus 253 lg-~~~P~-y~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli 320 (512)
T 4gri_A 253 FK-WKPPI-YCHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLE 320 (512)
T ss_dssp HT-CCCCE-EEEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHH
T ss_pred cC-CCCCe-EEecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHH
Confidence 35 45564 7888875 5689999999987 57777765 59999999887765443 2 1236655554
No 59
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=87.85 E-value=0.12 Score=45.28 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=18.6
Q ss_pred Ccccccc-CCCccCHHHHHhhcChhHHHHHHhc
Q psy11866 28 GCKMSKS-LKNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 28 g~KMSKS-lGN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
|+||||| .+|.|.+.|- |+.++=.+.+
T Consensus 236 g~KMSKS~~~~~I~L~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVDS-----DDDIRRKIRK 263 (364)
T ss_dssp -CBCCSSSGGGSCBTTCC-----HHHHHHHHHT
T ss_pred ccccCCCCCCCEeeccCC-----HHHHHHHHHh
Confidence 7999999 7888876653 5666655544
No 60
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=87.83 E-value=0.13 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=17.7
Q ss_pred eeeeeEe-eecC--ccccccCCC-ccCHH
Q psy11866 18 FLHSGHL-TIAG--CKMSKSLKN-FITIQ 42 (255)
Q Consensus 18 ~~h~g~l-~~~g--~KMSKSlGN-~i~~~ 42 (255)
.+|+.+| ..+| .|||||.+| .|.+.
T Consensus 238 ~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 238 ALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp EEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred eeecccccCCCCCccccccCCCCCeeeCC
Confidence 3455664 5677 599999999 77543
No 61
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=87.83 E-value=0.1 Score=46.75 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=14.0
Q ss_pred eeeeeEe-eecC--ccccccCCC-ccCHHH
Q psy11866 18 FLHSGHL-TIAG--CKMSKSLKN-FITIQD 43 (255)
Q Consensus 18 ~~h~g~l-~~~g--~KMSKSlGN-~i~~~d 43 (255)
.+|+.+| ..+| .|||||.|| .|.+.|
T Consensus 280 ~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 280 LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 3666665 5788 899999999 787654
No 62
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=87.13 E-value=0.15 Score=46.25 Aligned_cols=26 Identities=42% Similarity=0.533 Sum_probs=19.6
Q ss_pred eeeeeEe-eecC--ccccccCCC-ccCHHH
Q psy11866 18 FLHSGHL-TIAG--CKMSKSLKN-FITIQD 43 (255)
Q Consensus 18 ~~h~g~l-~~~g--~KMSKSlGN-~i~~~d 43 (255)
.+|+.+| ..+| .|||||.|| .|.+.|
T Consensus 334 ~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 334 LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred eeecccccCCCCCccccCCCCCCCceeecC
Confidence 3666664 5788 899999999 787654
No 63
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=84.69 E-value=0.25 Score=44.44 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=16.9
Q ss_pred eeeeeEe-eecCc--cccccCCC-ccCH
Q psy11866 18 FLHSGHL-TIAGC--KMSKSLKN-FITI 41 (255)
Q Consensus 18 ~~h~g~l-~~~g~--KMSKSlGN-~i~~ 41 (255)
.+|+.++ .++|. |||||.+| .|.+
T Consensus 318 ~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 318 YLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eecCCcccCCCCCCCccCCCCCCCeeee
Confidence 4566664 56775 99999998 5543
No 64
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=84.17 E-value=0.23 Score=43.68 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=18.6
Q ss_pred ccccccC-CCccCHHHHHhhcChhHHHHHHhc
Q psy11866 29 CKMSKSL-KNFITIQDALNKHTARQLRLAFLL 59 (255)
Q Consensus 29 ~KMSKSl-GN~i~~~d~l~~~~~d~lR~~ll~ 59 (255)
.|||||. +|.|.+.|- |+.++=.+.+
T Consensus 250 ~KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred hcccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 8999999 788876653 6666655544
No 65
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=84.07 E-value=0.21 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=18.0
Q ss_pred eeeeeeEe-ee-cC-ccccccC-CCccCHH
Q psy11866 17 YFLHSGHL-TI-AG-CKMSKSL-KNFITIQ 42 (255)
Q Consensus 17 ~~~h~g~l-~~-~g-~KMSKSl-GN~i~~~ 42 (255)
..+|+..+ .. +| .|||||. ||.|.+.
T Consensus 216 ~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~ 245 (348)
T 2j5b_A 216 ISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp EEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred eeecCccccCCCCcccccccCCCCCeEeec
Confidence 34666665 34 56 7999999 5878654
No 66
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=83.75 E-value=0.27 Score=43.69 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=18.8
Q ss_pred eeeeeEe-eecC--ccccccC-CCccCHHH
Q psy11866 18 FLHSGHL-TIAG--CKMSKSL-KNFITIQD 43 (255)
Q Consensus 18 ~~h~g~l-~~~g--~KMSKSl-GN~i~~~d 43 (255)
.+|+.+| ..+| .|||||. ||.|.+.|
T Consensus 274 ~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 274 SIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred eeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 4566665 5688 6999999 68886543
No 67
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=83.66 E-value=0.16 Score=44.02 Aligned_cols=16 Identities=56% Similarity=0.486 Sum_probs=13.1
Q ss_pred cC-ccccccC---CCccCHH
Q psy11866 27 AG-CKMSKSL---KNFITIQ 42 (255)
Q Consensus 27 ~g-~KMSKSl---GN~i~~~ 42 (255)
+| +|||||. ||.|.+.
T Consensus 197 dg~~KMSKS~~~~~~~I~L~ 216 (341)
T 3sz3_A 197 DATKKMSKSDDNRKNVITLL 216 (341)
T ss_dssp EEEEECCTTCSCGGGCCBTT
T ss_pred CCCCccCCCCCCCCCeeecC
Confidence 57 6999999 7888664
No 68
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=83.17 E-value=0.26 Score=42.81 Aligned_cols=16 Identities=44% Similarity=0.333 Sum_probs=12.3
Q ss_pred cC-ccccccCC---CccCHH
Q psy11866 27 AG-CKMSKSLK---NFITIQ 42 (255)
Q Consensus 27 ~g-~KMSKSlG---N~i~~~ 42 (255)
+| +|||||.+ |.|.+.
T Consensus 203 dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 203 DPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp CTTSBCCTTCSCGGGCCBTT
T ss_pred CCccccCCCCCCCCceecCC
Confidence 67 59999997 677654
No 69
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=82.72 E-value=0.3 Score=46.38 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=17.4
Q ss_pred eeeeeeEe-ee-cC-ccccccCC-CccC
Q psy11866 17 YFLHSGHL-TI-AG-CKMSKSLK-NFIT 40 (255)
Q Consensus 17 ~~~h~g~l-~~-~g-~KMSKSlG-N~i~ 40 (255)
+.+++..| .. +| +|||||.+ |.|.
T Consensus 214 ~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 214 VILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp EEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred eEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 45677776 34 78 49999998 6665
No 70
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=82.53 E-value=0.29 Score=43.17 Aligned_cols=17 Identities=53% Similarity=0.526 Sum_probs=13.4
Q ss_pred cC-ccccccC---CCccCHHH
Q psy11866 27 AG-CKMSKSL---KNFITIQD 43 (255)
Q Consensus 27 ~g-~KMSKSl---GN~i~~~d 43 (255)
+| +|||||. ||.|.+.|
T Consensus 222 dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 222 DPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp CTTSBCCTTCSSTTSCCBTTC
T ss_pred CCCCccCCCCCCCCCeeecCC
Confidence 44 7999999 89997643
No 71
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=64.93 E-value=1.7 Score=38.12 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=16.1
Q ss_pred eeeeeEe-eecCccccccCCC-ccCH
Q psy11866 18 FLHSGHL-TIAGCKMSKSLKN-FITI 41 (255)
Q Consensus 18 ~~h~g~l-~~~g~KMSKSlGN-~i~~ 41 (255)
-+|+.++ -.+|.|||||..| .|.+
T Consensus 243 ~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 243 STYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp EEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred hhhhcccCCCCCCccCCCCCCccccc
Confidence 3454553 5789999999855 5543
No 72
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=40.21 E-value=7.7 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHhcCchHHHHHhhHhhhcCCCCCCc
Q psy11866 219 NIRTEARLIKSTEILNQCDRLRDEVLPNVGV 249 (255)
Q Consensus 219 ~~R~~ar~~k~~~~~~~aD~iR~~~L~~~Gi 249 (255)
++|.+-.+.|+ +.-|+||.+ |...|.
T Consensus 19 E~RkElqK~K~----EIIeAi~~E-l~~~~~ 44 (45)
T 1use_A 19 EVKKELQKVKE----EIIEAFVQE-LRKRGS 44 (45)
T ss_dssp HHHHHHHHHHH----HHHHHHHHH-HHHC--
T ss_pred HHHHHHHHHHH----HHHHHHHHH-HHhcCC
Confidence 78888888998 899999999 577764
No 73
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=36.50 E-value=12 Score=21.78 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=11.7
Q ss_pred cCccccccCCCccC
Q psy11866 27 AGCKMSKSLKNFIT 40 (255)
Q Consensus 27 ~g~KMSKSlGN~i~ 40 (255)
.|.-+|.|+||.|+
T Consensus 18 ggglisrslgnsip 31 (54)
T 1pyv_A 18 GGGLISRSLGNSIP 31 (54)
T ss_dssp SSCSSSSTGGGGTT
T ss_pred CCceeehhhcccCc
Confidence 46789999999875
No 74
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=27.42 E-value=68 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.310 Sum_probs=17.3
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q psy11866 128 VHAALCDNMDTRSALDSIRDC 148 (255)
Q Consensus 128 ~~~al~dd~~~~~al~~l~~l 148 (255)
+...|..+||+.+|+..++.-
T Consensus 55 v~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 55 TEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHhc
Confidence 456788999999999998764
No 75
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=21.08 E-value=34 Score=21.44 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHhhHhhhcCCCCCCc
Q psy11866 212 ILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV 249 (255)
Q Consensus 212 ~l~~~r~~~R~~ar~~k~~~~~~~aD~iR~~~L~~~Gi 249 (255)
.++++|.....+-... ..++-..+|..|.+|+.+.|+
T Consensus 24 k~me~rD~LEeqG~~~-~~eI~~kV~~~RkkL~~~~~~ 60 (61)
T 2e62_A 24 ALIEYRETLEEQGMKN-PEEIERKVEINRKRLEVDYGL 60 (61)
T ss_dssp HHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhcCC
Confidence 3455544444432111 357788999999997666665
No 76
>2lsw_A Disabled homolog 2; platelet aggregation inhibitor, sulfatides, dodecylphosphoch blood clotting; NMR {Homo sapiens}
Probab=20.50 E-value=54 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=20.4
Q ss_pred ccccccCCCccCHHHHHhhcChhHHHH
Q psy11866 29 CKMSKSLKNFITIQDALNKHTARQLRL 55 (255)
Q Consensus 29 ~KMSKSlGN~i~~~d~l~~~~~d~lR~ 55 (255)
+|-|+-.|---+-.-+|..|-.|.+||
T Consensus 6 ~kk~~~~g~~rse~~Li~RfkGdGvrY 32 (40)
T 2lsw_A 6 SKKEKKKGPEKTDEYLLARFKGDGVKY 32 (40)
T ss_dssp CCSSCSSSCCCCSTTHHHHHTTTHHHH
T ss_pred chhhhhcCcchhHHHHHHHhcCCCeee
Confidence 455566666666677899999999998
Done!