RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11866
(255 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 80.4 bits (197), Expect = 3e-18
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
++ +V Y++HSG + + KMSKSL NF T++D L + A +R +
Sbjct: 237 NEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG 296
Query: 61 AWHQTLDYSDNTMEMA 76
+ L+YS+ ++ A
Sbjct: 297 HYRSQLNYSEENLKQA 312
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 60.8 bits (146), Expect = 2e-11
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
++ + + + +LT+ G K S S I + + L+ A LR
Sbjct: 280 GKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTI 339
Query: 61 A-WHQTLDYSDNTMEMAVTYE 80
+ D+S + ++ + E
Sbjct: 340 MPETRDSDFSFSDFKVRINEE 360
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 60.3 bits (145), Expect = 3e-11
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
+ + +N G++T+ G KMSKS FI LN A LR +
Sbjct: 265 LFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAK 324
Query: 61 A--WHQTLDYSDNTMEMAVTYEKLLNE 85
+D + V + ++N+
Sbjct: 325 LSSRIDDIDLNLEDFVQRVNAD-IVNK 350
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 58.8 bits (141), Expect = 1e-10
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 7 AYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQT 65
+ + LH L G KMSKS N I + + ++ A LR A + A Q
Sbjct: 352 HFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQD 411
Query: 66 LDYSDNTMEMA 76
+ +EMA
Sbjct: 412 IRLDLRWLEMA 422
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 58.5 bits (140), Expect = 1e-10
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
+ + L G KMSK+L N + L K+ LR L
Sbjct: 268 FWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 61 A-WHQTLDYSDNTMEMAVTYE 80
+ Q S+ + +
Sbjct: 328 IPYGQDTPVSEEALRTRYEAD 348
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 53.0 bits (126), Expect = 8e-09
Identities = 16/74 (21%), Positives = 24/74 (32%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
A + H + G KMSKSL N I + + A RL
Sbjct: 372 SITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 431
Query: 61 AWHQTLDYSDNTME 74
+ + SD ++
Sbjct: 432 DYLADVRISDEILK 445
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 52.6 bits (125), Expect = 1e-08
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 7 AYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHA-WHQT 65
F + ++ H L G KMSKS N + D + K A LR + A
Sbjct: 379 MLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEAD 438
Query: 66 LDYSDNTMEMAV 77
+ N + V
Sbjct: 439 RRFGPNLVRETV 450
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 51.7 bits (122), Expect = 2e-08
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 8 YFNNDSWVRYFLHSGHLTIAG--CKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQT 65
L + I G KMS S N I + D +R + H ++
Sbjct: 253 KEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKE 312
Query: 66 LD 67
+
Sbjct: 313 IK 314
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 41.5 bits (96), Expect = 5e-05
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 1 MSFRFQAYFNNDSWVRYFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLH 60
+ + + +R MSKS N + + + + A R+ L
Sbjct: 416 SALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFA 475
Query: 61 A-WHQTLDYSDNTME 74
A + +++ ++
Sbjct: 476 APPENEMVWTEEGVQ 490
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 470
Score = 29.2 bits (64), Expect = 0.57
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 163 LLLRDIGAYVTKILTVFGCIGDVKNIGFPL-GGTGVESTNLEELVLPYLTILSEFRDNIR 221
+++ DI +Y I VFG + + + + +S + E + L++ R
Sbjct: 63 VMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDS-RFVSE 121
Query: 222 TEARLIKSTEILNQCDRLRDEV 243
L+ + + D + +
Sbjct: 122 DVLALLDVPVLAARFDITEEGL 143
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 26.1 bits (56), Expect = 5.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 93 HIRNLKFPATTVSSFEKWTQADL 115
H+ P S + +W ADL
Sbjct: 44 HLLEQAQPDAYDSRYARWNLADL 66
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 25.3 bits (54), Expect = 7.9
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 17 YFLHSGHLTIAGCKMSKSLKNFITIQDALNKHTARQLRLAFLLHAWHQTLDYSDNTMEM- 75
+ L + + G +MS +++ + L + T R ++ + + M
Sbjct: 285 HHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARA---IVEEKNPDHPDKEEAARMV 341
Query: 76 ---AVTYEKLLNEFFLNVKDHIRNLKFPATTVSSFE 108
A+ + + + + + F SFE
Sbjct: 342 ALGAIRF------SMVKT-EPKKQIDFRYQEALSFE 370
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.405
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,254
Number of extensions: 40611
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)