BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11867
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 271/330 (82%)
Query: 68 AEKSLLQKIVRRGLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPS 127
A +SLL K++R L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PS
Sbjct: 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPS 116
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187
KIQE ALP +LA+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+
Sbjct: 117 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176
Query: 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
Q G+V+ +MGK +L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KI
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
KVFVLDEADVMIATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IK
Sbjct: 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296
Query: 308 LKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367
LKREEE+LD IKQ+YV+C + DEKF+A+ N+YG +TI QAMIFCHTRKTA+WLA ++SKE
Sbjct: 297 LKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 356
Query: 368 GLNVGLLSGELTVEQRLSILDRFREGEFKI 397
G V LLSGE+ VEQR ++++RFREG+ K+
Sbjct: 357 GHQVALLSGEMMVEQRAAVIERFREGKEKV 386
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 271/330 (82%)
Query: 68 AEKSLLQKIVRRGLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPS 127
A +SLL K++R L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PS
Sbjct: 6 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPS 65
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187
KIQE ALP +LA+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+
Sbjct: 66 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 125
Query: 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
Q G+V+ +MGK +L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KI
Sbjct: 126 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 185
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
KVFVLDEADVMIATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IK
Sbjct: 186 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 245
Query: 308 LKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367
LKREEE+LD IKQ+YV+C + DEKF+A+ N+YG +TI QAMIFCHTRKTA+WLA ++SKE
Sbjct: 246 LKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 305
Query: 368 GLNVGLLSGELTVEQRLSILDRFREGEFKI 397
G V LLSGE+ VEQR ++++RFREG+ K+
Sbjct: 306 GHQVALLSGEMMVEQRAAVIERFREGKEKV 335
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 271/330 (82%)
Query: 68 AEKSLLQKIVRRGLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPS 127
A +SLL K++R L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PS
Sbjct: 27 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPS 86
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187
KIQE ALP +LA+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+
Sbjct: 87 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 146
Query: 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
Q G+V+ +MGK +L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KI
Sbjct: 147 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 206
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
KVFVLDEADVMIATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IK
Sbjct: 207 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 266
Query: 308 LKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367
LKREEE+LD IKQ+YV+C + DEKF+A+ N+YG +TI QAMIFCHTRKTA+WLA ++SKE
Sbjct: 267 LKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 326
Query: 368 GLNVGLLSGELTVEQRLSILDRFREGEFKI 397
G V LLSGE+ VEQR ++++RFREG+ K+
Sbjct: 327 GHQVALLSGEMMVEQRAAVIERFREGKEKV 356
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust.
Identities = 205/318 (64%), Positives = 262/318 (82%)
Query: 80 GLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLA 139
L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PSKIQE ALP +LA
Sbjct: 2 NLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA 61
Query: 140 DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199
+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+Q G+V+ +MGK
Sbjct: 62 EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 121
Query: 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259
+L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KIKVFVLDEADVMI
Sbjct: 122 YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Query: 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIK 319
ATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IKLKREEE+LD IK
Sbjct: 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 241
Query: 320 QHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379
Q+YV+C + DEKF+A+ N+YG +TI QAMIFCHTRKTA+WLA ++SKEG V LLSGE+
Sbjct: 242 QYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMM 301
Query: 380 VEQRLSILDRFREGEFKI 397
VEQR ++++RFREG+ K+
Sbjct: 302 VEQRAAVIERFREGKEKV 319
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/244 (63%), Positives = 198/244 (81%)
Query: 68 AEKSLLQKIVRRGLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPS 127
A +SLL K++R L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PS
Sbjct: 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPS 116
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187
KIQE ALP +LA+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+
Sbjct: 117 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176
Query: 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
Q G+V+ +MGK +L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KI
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
KVFVLDEADVMIATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IK
Sbjct: 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296
Query: 308 LKRE 311
LKRE
Sbjct: 297 LKRE 300
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 152/234 (64%), Positives = 191/234 (81%)
Query: 80 GLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLA 139
L+++ ++E+ ++DP+SPLYSVK+FE L LKP+LL+GVY MGF PSKIQE ALP +LA
Sbjct: 2 NLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA 61
Query: 140 DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199
+PP N+IAQSQSGTGKTAAF L MLS+V P+ + PQ LCL+PTYELA+Q G+V+ +MGK
Sbjct: 62 EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 121
Query: 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259
+L + YAVRG LER +KI+EQI+IGTPG VLDW K +F D KIKVFVLDEADVMI
Sbjct: 122 YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Query: 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE 313
ATQGHQD SIRIQ+ LP +CQ++LFSAT++ V +FAQ +VP+P +IKLKREEE
Sbjct: 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 235
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 151/295 (51%), Positives = 207/295 (70%), Gaps = 3/295 (1%)
Query: 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162
K+F+ L L PELLKG+Y M F PSKIQE ALP LL +PP NMIAQSQSGTGKTAAF+LT
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222
ML+RVNP PQ +CLAP+ ELA Q EVV +MGK T ++ + V ++ E+NK+I
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK-FTKITSQLIV-PDSFEKNKQINA 122
Query: 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282
Q+I+GTPG VLD ++ + L KIK+FVLDEAD M+ QG D IR+++ LP D Q++
Sbjct: 123 QVIVGTPGTVLDL-MRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLV 181
Query: 283 LFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV 342
LFSAT+ V ++A+ +VPN ++L+ E ++D IKQ Y+ CKN +KF+ ++ +YGV+
Sbjct: 182 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVM 241
Query: 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
TIG ++IF T+KTA L K+ EG V +L G+L ++R ++D FREG K+
Sbjct: 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKV 296
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 207/295 (70%), Gaps = 3/295 (1%)
Query: 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162
K+F+ L L PELLKG+Y M F PSKIQE ALP LL +PP NMIAQSQSGTGKTAAF+LT
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222
ML+RVNP PQ +CLAP+ ELA Q EVV +MGK T ++ + V ++ E+NK+I
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK-FTKITSQLIV-PDSFEKNKQINA 122
Query: 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282
Q+I+GTPG VLD ++ + L KIK+FVLDEAD M+ QG D IR+++ LP D Q++
Sbjct: 123 QVIVGTPGTVLDL-MRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLV 181
Query: 283 LFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV 342
LFSAT+ V ++A+ +VPN ++L+ E ++D IKQ Y+ CKN +KF+ ++ +YG++
Sbjct: 182 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM 241
Query: 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
TIG ++IF T+KTA L K+ EG V +L G+L ++R ++D FREG K+
Sbjct: 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKV 296
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 133/270 (49%), Positives = 188/270 (69%), Gaps = 3/270 (1%)
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187
KIQE ALP LL++PP NMI QSQSGTGKTAAF LTMLSRV+ S+ +PQ +CLAP+ ELA
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203
Query: 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
QI +VV +MGK+ T++ + ++ +++ + KI QI+IGTPG V+D +K R D I
Sbjct: 204 QIMDVVTEMGKY-TEVKTAFGIK-DSVPKGAKIDAQIVIGTPGTVMDL-MKRRQLDARDI 260
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
KVFVLDEAD M+ QG D S+RI+ LP + QI+LFSAT+ + V ++A+ PN I+
Sbjct: 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIR 320
Query: 308 LKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367
LK EE S++ IKQ Y+ C++ + K+ + +YG++TIGQ++IFC + TA +A +M+ +
Sbjct: 321 LKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD 380
Query: 368 GLNVGLLSGELTVEQRLSILDRFREGEFKI 397
G V L+G L QR +I+D FR G K+
Sbjct: 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSKV 410
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 162/227 (71%), Gaps = 3/227 (1%)
Query: 83 ESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPP 142
E K +L + DP+SPLYS K+F+ L L PELLKG+Y M F PSKIQE ALP LL +PP
Sbjct: 2 EVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPP 61
Query: 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202
NMIAQSQSGTGKTAAF+LTML+RVNP PQ +CLAP+ ELA Q EVV +MGK T
Sbjct: 62 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK-FTK 120
Query: 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262
++ + V ++ E+NK+I Q+I+GTPG VLD ++ + L KIK+FVLDEAD M+ Q
Sbjct: 121 ITSQLIV-PDSFEKNKQINAQVIVGTPGTVLDL-MRRKLMQLQKIKIFVLDEADNMLDQQ 178
Query: 263 GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK 309
G D IR+++ LP D Q++LFSAT+ V ++A+ +VPN ++L+
Sbjct: 179 GLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQ 225
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 181/298 (60%), Gaps = 7/298 (2%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ + L LL+GV+ GF PS IQ+ A+ ++ H+++AQ+QSGTGKT F++
Sbjct: 21 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQAQSGTGKTGTFSI 78
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
L R++ S++ PQ L LAPT ELA+QI +VV + H+ D+ V + G + + +
Sbjct: 79 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL 137
Query: 222 E--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
QI++GTPG+V D ++ R F KIK+F+LDEAD M+++ G ++ +I LP
Sbjct: 138 RDAQIVVGTPGRVFD-NIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTT 195
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339
Q++L SAT +V+E + NP+ I +K++E +L+ IKQ YV + + K+E ++++Y
Sbjct: 196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 255
Query: 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+++ QA+IFC+TR+ L K+ + V + +L ++R +I+ FR G +I
Sbjct: 256 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 313
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII--KGRDVIAQSQSGTGKTATFSISV 96
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+QI + + +G ++ ++ + G N+ R
Sbjct: 97 LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 155
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 156 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 213
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT E++E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 273
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 330
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII--KGRDVIAQSQSGTGKTATFSISV 96
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+QI + + +G ++ ++ + G N+ R
Sbjct: 97 LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 155
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 156 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 213
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT E++E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 273
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 330
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII--KGRDVIAQSQSGTGKTATFSISV 95
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+QI + + +G ++ ++ + G N+ R
Sbjct: 96 LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 154
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 155 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 212
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT E++E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 329
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 17 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISV 74
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+QI + + +G ++ ++ + G N+ R
Sbjct: 75 LQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 133
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 134 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 191
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT E++E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 192 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 251
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 252 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 308
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSVSV 59
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+Q+ + + +G ++ ++ + G N+ R
Sbjct: 60 LQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYM-NVQSHACIGGTNVGEDIRKLDY 118
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 119 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 176
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT EV+E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 177 VVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 236
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 237 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 179/297 (60%), Gaps = 8/297 (2%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F++++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSVSV 59
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKI 220
L ++ ++E Q L LAPT ELA+Q+ + + +G ++ ++ + G N+ R
Sbjct: 60 LQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY 118
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ ++ GTPG+V D ++ R IK+ VLDEAD M+ +G ++ + + LP Q
Sbjct: 119 GQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQ 176
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340
++L SAT E++E + +P+ I +KR+E +L+ IKQ +V + + KF+ + ++Y
Sbjct: 177 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 236
Query: 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+TI QA+IFC+T++ WL EKM + V + G++ ++R SI+ FR G ++
Sbjct: 237 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 7/298 (2%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ L LL+GV+ GF PS IQ+ A+ ++ H+++AQ+QSGTGKT F++
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEG--HDVLAQAQSGTGKTGTFSI 77
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
L R++ S++ PQ L LAPT ELA+QI +VV + H D+ V + G + + +
Sbjct: 78 AALQRIDTSVKAPQALXLAPTRELALQIQKVVXALAFH-XDIKVHACIGGTSFVEDAEGL 136
Query: 222 E--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
QI++GTPG+V D ++ R F KIK F+LDEAD +++ G ++ +I LP
Sbjct: 137 RDAQIVVGTPGRVFD-NIQRRRFRTDKIKXFILDEADEXLSS-GFKEQIYQIFTLLPPTT 194
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339
Q++L SAT +V+E NP+ I +K++E +L+ IKQ YV + + K+E ++++Y
Sbjct: 195 QVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 254
Query: 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
+++ QA+IFC+TR+ L K+ + V + +L ++R +I FR G +I
Sbjct: 255 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRI 312
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 180/301 (59%), Gaps = 11/301 (3%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETA-LPTLLADPPHNMIAQSQSGTGKTAAFT 160
V +F+ ++L LL+G+Y GF PS IQ+ A LP + +++IAQ+QSGTGKTA F
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 95
Query: 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL----ER 216
+++L ++ ++ Q L LAPT ELA QI +VV +G ++ S + G N+ ++
Sbjct: 96 ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQK 154
Query: 217 NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276
+ II+GTPG+V D L R+ IK+FVLDEAD M+ ++G +D I ++L
Sbjct: 155 LQMEAPHIIVGTPGRVFDM-LNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLN 212
Query: 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVS 336
S+ Q++L SAT +V+E + + +P+ I +K+EE +L+ I+Q Y+ + + K + +
Sbjct: 213 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 272
Query: 337 NIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396
++Y +TI QA+IF +TR+ WL EKM V + G++ ++R I+ FR G +
Sbjct: 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 332
Query: 397 I 397
+
Sbjct: 333 V 333
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 180/301 (59%), Gaps = 11/301 (3%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETA-LPTLLADPPHNMIAQSQSGTGKTAAFT 160
V +F+ ++L LL+G+Y GF PS IQ+ A LP + +++IAQ+QSGTGKTA F
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI---KGYDVIAQAQSGTGKTATFA 69
Query: 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL--ERNK 218
+++L ++ ++ Q L LAPT ELA QI +VV +G ++ S + G N+ E K
Sbjct: 70 ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQK 128
Query: 219 KITE--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276
E II+GTPG+V D L R+ IK+FVLDEAD M++ +G +D I ++L
Sbjct: 129 LQMEAPHIIVGTPGRVFDM-LNRRYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLN 186
Query: 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVS 336
S+ Q++L SAT +V+E + + +P+ I +K+EE +L+ I+Q Y+ + + K + +
Sbjct: 187 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 246
Query: 337 NIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396
++Y +TI QA+IF +TR+ WL EKM V + G++ ++R I+ FR G +
Sbjct: 247 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 306
Query: 397 I 397
+
Sbjct: 307 V 307
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 16/299 (5%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TFE +LK ELL G++E GF PS IQE A+P +A +++A++++GTGKTAAF +
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIP--VAITGRDILARAKNGTGKTAAFVIPT 79
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKI 220
L +V P + + Q L + PT ELA+Q +VV +GKH +S G NL +
Sbjct: 80 LEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNE 138
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK---RLPS 277
T I++GTPG+VLD + + DLS +F++DEAD M++ +DF I++ LP
Sbjct: 139 TVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLS----RDFKTIIEQILSFLPP 193
Query: 278 DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337
Q +LFSAT+ V EF + P I L EE +L I Q+Y + +K ++
Sbjct: 194 THQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEE-RQKLHCLNT 251
Query: 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396
++ + I QA+IFC++ LA+K++ G + + ++R + FR+G+ +
Sbjct: 252 LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 134/217 (61%), Gaps = 7/217 (3%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ + L LL+GV+ GF PS IQ+ A+ ++ H+++AQ+QSGTGKT F++
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSI 70
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
L R++ S++ PQ L LAPT ELA+QI +VV + H+ D+ V + G + + +
Sbjct: 71 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL 129
Query: 222 E--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
QI++GTPG+V D ++ R F KIK+F+LDEAD M+++ G ++ +I LP
Sbjct: 130 RDAQIVVGTPGRVFD-NIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTT 187
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLD 316
Q++L SAT +V+E + NP+ I +K++E +L+
Sbjct: 188 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE 224
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 7/207 (3%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ + L +LL+GV+ GF PS IQ+ A+ ++ H+++AQ+QSGTGKT F++
Sbjct: 20 VYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSI 77
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
L R++ S++ PQ L LAPT ELA+QI +VV + H+ D+ V + G + + +
Sbjct: 78 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL 136
Query: 222 E--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
QI++GTPG+V D ++ R F KIK+F+LDEAD M+++ G ++ +I LP
Sbjct: 137 RDAQIVVGTPGRVFD-NIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTT 194
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLII 306
Q++L SAT +V+E + NP+ I
Sbjct: 195 QVVLLSATMPNDVLEVTTKFMRNPVRI 221
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 129/214 (60%), Gaps = 9/214 (4%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ ++LK LL+G+Y GF PS IQ+ A+ + +++IAQ+QSGTGKTA F +
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAI 86
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGEN----LERN 217
++L ++ +E Q L LAPT ELA QI +V+ +G ++ + + G N +++
Sbjct: 87 SILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKL 145
Query: 218 KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS 277
+ I++GTPG+V D L R+ IK+FVLDEAD M+ ++G +D I ++L +
Sbjct: 146 QAEAPHIVVGTPGRVFDM-LNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNT 203
Query: 278 DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKRE 311
Q++L SAT +V+E + + +P+ I +K+E
Sbjct: 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 97 SPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKT 156
SP + F LKPELL+ + + GF PS++Q +P + +++ Q++SG GKT
Sbjct: 2 SPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKT 59
Query: 157 AAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER 216
A F L L ++ P + VL + T ELA QI + + K++ ++ V G ++++
Sbjct: 60 AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 217 N----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQ 272
+ KK I++GTPG++L + + +L IK F+LDE D M+ + I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 273 KRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNIDEK 331
+ P + Q+M+FSAT KE+ + + +P+ I + E + +L ++Q+YV K+ +EK
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEK 237
Query: 332 FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFR 391
+ ++ V+ Q +IF + + LA+ + ++ + + E+RLS +F+
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297
Query: 392 EGEFKI 397
+ + +I
Sbjct: 298 DFQRRI 303
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 97 SPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKT 156
SP + F LKPELL+ + + GF PS++Q +P + +++ Q++SG GKT
Sbjct: 2 SPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKT 59
Query: 157 AAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER 216
A F L L ++ P + VL + T ELA QI + + K++ ++ V G ++++
Sbjct: 60 AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 217 N----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQ 272
+ KK I++GTPG++L + + +L IK F+LDE D M+ + I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 273 KRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNIDEK 331
+ P + Q+M+FSAT KE+ + + +P+ I + E + +L ++Q+YV K+ +EK
Sbjct: 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEK 237
Query: 332 FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFR 391
+ ++ V+ Q +IF + + LA+ + ++ + + E+RLS +F+
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297
Query: 392 EGEFKI 397
+ + +I
Sbjct: 298 DFQRRI 303
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 158/298 (53%), Gaps = 9/298 (3%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
F LKPELL+ + + GF PS++Q +P + +++ Q++SG GKTA F L L
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATL 66
Query: 165 SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN----KKI 220
++ P + VL + T ELA QI + + K++ ++ V G +++++ KK
Sbjct: 67 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 126
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
I++GTPG++L + + +L IK F+LDEAD M+ + I + P + Q
Sbjct: 127 CPHIVVGTPGRILALA-RNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQ 185
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNIDEKFEAVSNIY 339
+M+FSAT KE+ + + +P+ I + E + +L ++Q+YV K+ +EK + ++
Sbjct: 186 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLL 244
Query: 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
V+ Q +IF + + LA+ + ++ + + E+RLS +F++ + +I
Sbjct: 245 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 302
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 25/302 (8%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
F L+L +L + GF P+ IQ +P L D +N++AQ+++G+GKTA+F + +
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDE-YNIVAQARTGSGKTASFAIPL 65
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI--T 221
+ VN + + + L PT ELAIQ+ + + + K +L + G+ + K
Sbjct: 66 IELVNEN-NGIEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQIKALKN 123
Query: 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQI 281
I++GTPG++LD + +L +K F+LDEAD + +D +I D +I
Sbjct: 124 ANIVVGTPGRILDH-INRGTLNLKNVKYFILDEADEXLNXGFIKDVE-KILNACNKDKRI 181
Query: 282 MLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI--- 338
+LFSAT +E++ A+ + IK K NI+Q YV N +E+FEA+ +
Sbjct: 182 LLFSATXPREILNLAKKYXGDYSFIKAKINA----NIEQSYVEV-NENERFEALCRLLKN 236
Query: 339 ---YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395
YG ++FC T++ LA + G G + G+L+ QR ++ F++ +
Sbjct: 237 KEFYG-------LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289
Query: 396 KI 397
+I
Sbjct: 290 RI 291
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 11/210 (5%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETA-LPTLLADPPHNMIAQSQSGTGKTAAFT 160
V +F+ ++L LL+G+Y GF PS IQ+ A LP + +++IAQ+QSGTG TA F
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXG---YDVIAQAQSGTGXTATFA 70
Query: 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220
+++L ++ + Q L LAPT ELA QI VV +G ++ S + G N+ +
Sbjct: 71 ISILQQIELDLXATQALVLAPTRELAQQIQXVVMALGDYM-GASCHACIGGTNVRAEVQX 129
Query: 221 TE----QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276
+ II+GTPG+V D L R+ I +FVLDEAD M+ ++G D I + L
Sbjct: 130 LQMEAPHIIVGTPGRVFDM-LNRRYLSPXYIXMFVLDEADEML-SRGFXDQIYDIFQXLN 187
Query: 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLII 306
S+ Q++L SAT +V+E + +P+ I
Sbjct: 188 SNTQVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 15/211 (7%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
F+ LKPE+L+ ++ G P+ IQ ALP LA ++I Q+++GTGKT AF L +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALP--LALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 165 SRVNPSIQ---EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVR----YAVRGENLERN 217
R+ PS + +P+ L L PT ELA+Q+ + + H+ ++V Y + E L R
Sbjct: 61 ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRG 120
Query: 218 KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS 277
++ TPG+ LD+ L+ DLS+++V VLDEAD M+ + G ++ + P
Sbjct: 121 A----DAVVATPGRALDY-LRQGVLDLSRVEVAVLDEADEML-SMGFEEEVEALLSATPP 174
Query: 278 DCQIMLFSATYDKEVMEFAQDMVPNPLIIKL 308
Q +LFSAT A+ + NP++I +
Sbjct: 175 SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 118/206 (57%), Gaps = 15/206 (7%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
FE LK ELL G++EMG+ PS IQE ++P L+ +++A++++GTGK+ A+ + +L
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLL 62
Query: 165 SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKIT 221
R++ Q + + PT ELA+Q+ ++ ++ KH+ V G NL + T
Sbjct: 63 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK----RLPS 277
++I TPG++LD +K + +++ VLDEAD +++ QDF ++I + LP
Sbjct: 123 VHVVIATPGRILDL-IKKGVAKVDHVQMIVLDEADKLLS----QDF-VQIMEDIILTLPK 176
Query: 278 DCQIMLFSATYDKEVMEFAQDMVPNP 303
+ QI+L+SAT+ V +F + P
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKP 202
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 68/84 (80%)
Query: 314 SLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGL 373
+L+NI+Q+YV+C++ +K++A+ NIYG +TIGQA+IFC TR+ A WL +M ++G V L
Sbjct: 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSL 63
Query: 374 LSGELTVEQRLSILDRFREGEFKI 397
LSGELTVEQR SI+ RFR+G+ K+
Sbjct: 64 LSGELTVEQRASIIQRFRDGKEKV 87
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 15/211 (7%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
F+ LKPE+L+ ++ G P+ I+ ALP LA ++I Q+++GTGKT AF L +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALP--LALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 165 SRVNPSIQ---EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVR----YAVRGENLERN 217
R+ PS + +P+ L L PT ELA+Q+ + + H+ ++V Y + E L R
Sbjct: 61 ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRG 120
Query: 218 KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS 277
++ TPG+ LD+ L+ DLS+++V VLDEAD M++ ++ + PS
Sbjct: 121 A----DAVVATPGRALDY-LRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175
Query: 278 DCQIMLFSATYDKEVMEFAQDMVPNPLIIKL 308
Q +LFSAT A+ + NP++I +
Sbjct: 176 R-QTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 7/206 (3%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
F LKPELL+ + + GF PS++Q +P + +++ Q++SG GKTA F L L
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATL 73
Query: 165 SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN----KKI 220
++ P + VL + T ELA QI + + K++ ++ V G +++++ KK
Sbjct: 74 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
I++GTPG++L + + +L IK F+LDE D M+ + I + P + Q
Sbjct: 134 CPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 192
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLII 306
+M+FSAT KE+ + + +P+ I
Sbjct: 193 VMMFSATLSKEIRPVCRKFMQDPMEI 218
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 153/307 (49%), Gaps = 19/307 (6%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
++ F + L+ ++ V + G+ P+ IQ+ ++P + + +++A +Q+G+GKTAAF L
Sbjct: 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLL 112
Query: 162 TMLSRV--NP---SIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL-E 215
+LS++ +P + PQV+ ++PT ELAIQI K + L + G +
Sbjct: 113 PILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRH 171
Query: 216 RNKKITE--QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF-SIRIQ 272
+N+ IT ++I TPG++LD+ + F + VLDEAD M+ +D I
Sbjct: 172 QNECITRGCHVVIATPGRLLDF-VDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230
Query: 273 KRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKF 332
+ + Q ++FSAT+ +E+ A + + N + + + + ++KQ K+
Sbjct: 231 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN----KY 286
Query: 333 EAVSNIYGVVT--IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRF 390
S + +++ ++F T++ A +LA +S++ + G+ QR L F
Sbjct: 287 AKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 346
Query: 391 REGEFKI 397
+ G K+
Sbjct: 347 KNGSMKV 353
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 21/212 (9%)
Query: 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162
KTF+ L + L + ++G+ P+KIQ A+P LA ++I +++G+GKT AF L
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP--LALQGRDIIGLAETGSGKTGAFALP 100
Query: 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAV-------RGENLE 215
+L+ + + Q L L PT ELA QI E +G I V+ AV ++L
Sbjct: 101 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI---GVQSAVIVGGIDSMSQSLA 157
Query: 216 RNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSI---RIQ 272
KK III TPG+++D + F+L +K V+DEAD ++ + DF +I
Sbjct: 158 LAKK--PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL----NMDFETEVDKIL 211
Query: 273 KRLPSDCQIMLFSATYDKEVMEFAQDMVPNPL 304
K +P D + LFSAT K+V + + + NP+
Sbjct: 212 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPV 243
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 10/210 (4%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
F +P +++ + + FY P++IQE +P L + + QSQ+GTGKT A+ L +
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRG--ESXVGQSQTGTGKTHAYLLPIX 63
Query: 165 SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD---LSVRYAVRGENLER---NK 218
++ P E Q + APT ELA QI K+ K + R + G + ++
Sbjct: 64 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKL 123
Query: 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSD 278
+ I+IGTPG++ D+ ++ + D+ + V+DEAD+ + D +I R P D
Sbjct: 124 NVQPHIVIGTPGRINDF-IREQALDVHTAHILVVDEADLXLDXGFITDVD-QIAARXPKD 181
Query: 279 CQIMLFSATYDKEVMEFAQDMVPNPLIIKL 308
Q ++FSAT +++ F + NP + +
Sbjct: 182 LQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Query: 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML 164
FE+L L +L+G+ GF PS +Q A+P L ++I Q++SGTGKT F+ L
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIAL 83
Query: 165 SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQ- 223
+ Q+L LAPT E+A+QI V+ +G + L + G L ++K ++
Sbjct: 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC 143
Query: 224 -IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282
I +G+PG++ ++ + + I++F+LDEAD ++ Q+ I LP+ Q++
Sbjct: 144 HIAVGSPGRIKQL-IELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 202
Query: 283 LFSATYDKEVMEFAQDMVPNPLIIKL 308
SATY + + + +P ++L
Sbjct: 203 AVSATYPEFLANALTKYMRDPTFVRL 228
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 142/320 (44%), Gaps = 49/320 (15%)
Query: 113 ELLKGVYEMGFYA-PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLS------ 165
E++ G E+ Y P+ +Q+ A+P + +++A +Q+G+GKTAAF L +LS
Sbjct: 24 EIIMGNIELTRYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81
Query: 166 ------------RVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGEN 213
R Q P L LAPT ELA+QI E K S R VR
Sbjct: 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARK-------FSYRSRVRPCV 134
Query: 214 LERNKKITEQI---------IIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGH 264
+ I +QI ++ TPG+++D ++ L K VLDEAD M+
Sbjct: 135 VYGGADIGQQIRDLERGCHLLVATPGRLVDM-MERGKIGLDFCKYLVLDEADRML----D 189
Query: 265 QDFSIRIQKRLPSDC-------QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDN 317
F +I++ + D M+FSAT+ KE+ A+D + + + + R + +N
Sbjct: 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249
Query: 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE 377
I Q V + D++ + + ++F T+K A L + + EG + G+
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 309
Query: 378 LTVEQRLSILDRFREGEFKI 397
+ R L +FR G+ I
Sbjct: 310 RSQRDREEALHQFRSGKSPI 329
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 31/240 (12%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
++ F+ L L P + + + P+ IQ+ A+P +L +++A +Q+G+GKTAAF +
Sbjct: 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH--RDIMACAQTGSGKTAAFLI 79
Query: 162 TMLSRV---------NPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGE 212
+++ + P+ L LAPT ELAIQI +++ K + +R V
Sbjct: 80 PIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI---LSESQKFSLNTPLRSCVVYG 136
Query: 213 NLERNKKITE-----QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267
+ + +I E +++ TPG+++D+ K + L K VLDEAD M+ F
Sbjct: 137 GADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI-SLEFCKYIVLDEADRML----DMGF 191
Query: 268 SIRIQK-----RLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQ 320
+I+K +PS + Q ++FSAT+ KE+ + A D + N + + + R + D+IKQ
Sbjct: 192 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 156/317 (49%), Gaps = 35/317 (11%)
Query: 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169
L E+ K + M F + +Q+ + +L+ H++IA++++GTGKT AF + + +
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 170 SIQEPQVLC----LAPTYELAIQIGEVVAKMGKHITDLSVRYA----VRGEN----LERN 217
+ + Q + +APT +LA+QI V K+ L +YA V G + + +
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLK-KYACVSLVGGTDFRAAMNKM 197
Query: 218 KKITEQIIIGTPGKVLDWGLKY--RFFDLSKIKVFVLDEADVMIATQGHQDF----SIRI 271
K+ I+I TPG+++D KY +FF K VLDEAD ++ D I
Sbjct: 198 NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILN 255
Query: 272 QKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKL----KREEESLDNIKQHYVMC 325
+K S + + +LFSAT D +V + A +++ + L K E E+ + I Q V+
Sbjct: 256 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315
Query: 326 -KNIDEKFEAVSNIYGVV----TIGQAMIFCHTRKTAAWLAEKMS---KEGLNVGLLSGE 377
K + F AV +I + + +A+IF T K ++L + K+ L + G+
Sbjct: 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375
Query: 378 LTVEQRLSILDRFREGE 394
+T +R S++ RF++ E
Sbjct: 376 ITQNKRTSLVKRFKKDE 392
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 156/317 (49%), Gaps = 35/317 (11%)
Query: 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169
L E+ K + M F + +Q+ + +L+ H++IA++++GTGKT AF + + +
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 170 SIQEPQVLC----LAPTYELAIQIGEVVAKMGKHITDLSVRYA----VRGEN----LERN 217
+ + Q + +APT +LA+QI V K+ L +YA V G + + +
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLK-KYACVSLVGGTDFRAAMNKM 146
Query: 218 KKITEQIIIGTPGKVLDWGLKY--RFFDLSKIKVFVLDEADVMIATQGHQDF----SIRI 271
K+ I+I TPG+++D KY +FF K VLDEAD ++ D I
Sbjct: 147 NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILN 204
Query: 272 QKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKL----KREEESLDNIKQHYVMC 325
+K S + + +LFSAT D +V + A +++ + L K E E+ + I Q V+
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 326 -KNIDEKFEAVSNIYGVV----TIGQAMIFCHTRKTAAWLAEKMS---KEGLNVGLLSGE 377
K + F AV +I + + +A+IF T K ++L + K+ L + G+
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 378 LTVEQRLSILDRFREGE 394
+T +R S++ RF++ E
Sbjct: 325 ITQNKRTSLVKRFKKDE 341
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 156/317 (49%), Gaps = 35/317 (11%)
Query: 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169
L E+ K + M F + +Q+ + +L+ H++IA++++GTGKT AF + + +
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 170 SIQEPQVLC----LAPTYELAIQIGEVVAKMGKHITDLSVRYA----VRGEN----LERN 217
+ + Q + +APT +LA+QI V K+ L +YA V G + + +
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLK-KYACVSLVGGTDFRAAMNKM 146
Query: 218 KKITEQIIIGTPGKVLDWGLKY--RFFDLSKIKVFVLDEADVMIATQGHQDF----SIRI 271
K+ I+I TPG+++D KY +FF K VLDEAD ++ D I
Sbjct: 147 NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILN 204
Query: 272 QKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKL----KREEESLDNIKQHYVMC 325
+K S + + +LFSAT D +V + A +++ + L K E E+ + I Q V+
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 326 -KNIDEKFEAVSNIYGVV----TIGQAMIFCHTRKTAAWLAEKMS---KEGLNVGLLSGE 377
K + F AV +I + + +A+IF T K ++L + K+ L + G+
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 378 LTVEQRLSILDRFREGE 394
+T +R S++ RF++ E
Sbjct: 325 ITQNKRTSLVKRFKKDE 341
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 35/288 (12%)
Query: 116 KGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQ 175
+ + EMGF +++Q +P +L N++ ++++G+GKTAA+ + +L S
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLML--QGKNVVVRAKTGSGKTAAYAIPILELGMKS----- 59
Query: 176 VLCLAPTYELAIQIGEVVAKMGKHI-TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLD 234
L + PT EL Q+ + +G+++ T ++ Y + N+ I++ TPG++LD
Sbjct: 60 -LVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLD 118
Query: 235 WGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM-LFSATYDKEVM 293
K DLS ++ ++DEAD+M D I + + S+ +I LFSAT +E+
Sbjct: 119 LWSKG-VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ--TSNRKITGLFSATIPEEIR 175
Query: 294 EFAQDMVPNPLIIKLKREEES---LDNIKQHYVMCK-NIDEKFEAV--SNIYGVVTIGQA 347
+ +D + N E E+ L N++ +V K + K +A+ + GV+
Sbjct: 176 KVVKDFITN------YEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVI----- 224
Query: 348 MIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395
+F TR A L N L G+L R +D FREGE+
Sbjct: 225 -VFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEY 267
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 312 EESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNV 371
E ++D IKQ Y CKN +KF+ ++ +YGV TIG ++IF T+KTA L K+ EG V
Sbjct: 4 EVNVDAIKQLYXDCKNEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEV 63
Query: 372 GLLSGELTVEQRLSILDRFREGEFKI 397
+L G+L ++R ++D FREG K+
Sbjct: 64 SILHGDLQTQERDRLIDDFREGRSKV 89
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 312 EESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNV 371
E ++D IKQ Y+ CKN +KF+ ++ +YG++TIG ++IF T+KTA L K+ EG V
Sbjct: 3 EVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEV 62
Query: 372 GLLSGELTVEQRLSILDRFREGEFKI 397
+L G+L ++R ++D FREG K+
Sbjct: 63 SILHGDLQTQERDRLIDDFREGRSKV 88
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 14/210 (6%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF-- 159
+ F L + LKG+ E + ++IQ+ + LA +++ +++G+GKT AF
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIG--LALQGKDVLGAAKTGSGKTLAFLV 81
Query: 160 -TLTMLSRVN-PSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL--- 214
L L R+ S VL ++PT ELA Q EV+ K+GK+ D S + G++L
Sbjct: 82 PVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHE 140
Query: 215 -ERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK 273
ER I I++ TPG++L + F + +++ VLDEAD I G D + +
Sbjct: 141 AERINNIN--ILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADTMNAVIE 197
Query: 274 RLPSDCQIMLFSATYDKEVMEFAQDMVPNP 303
LP Q +LFSAT K V + A+ + NP
Sbjct: 198 NLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 312 EESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNV 371
E ++D IKQ Y CKN +KF+ ++ +YG+ TIG ++IF T+KTA L K+ EG V
Sbjct: 5 EVNVDAIKQLYXDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEV 64
Query: 372 GLLSGELTVEQRLSILDRFREGEFKI 397
+L G+L ++R ++D FREG K+
Sbjct: 65 SILHGDLQTQERDRLIDDFREGRSKV 90
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 19/233 (8%)
Query: 82 IESKQELEIQRKDP------HSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALP 135
+ + QE+E R+ H+ V F + ++ + F P+ IQ P
Sbjct: 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWP 61
Query: 136 TLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN--PSIQE---PQVLCLAPTYELAIQIG 190
L+ +M+ +Q+G+GKT ++ L + +N P ++ P L LAPT ELA Q+
Sbjct: 62 VALSG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 119
Query: 191 EVVAKMGKHITDLSVRY---AVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247
+V A+ + S A +G + R+ + +I I TPG+++D+ L+ +L +
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQI-RDLERGVEICIATPGRLIDF-LECGKTNLRRT 177
Query: 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300
VLDEAD M+ G + +I ++ D Q +++SAT+ KEV + A+D +
Sbjct: 178 TYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 229
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 26/257 (10%)
Query: 69 EKSLLQK---IVRRGLIESKQELEIQRKDP------HSPLYSVKTFEALHLKPELLKGVY 119
EK+ Q+ + RR + QE+E R+ H+ V F + ++ +
Sbjct: 4 EKNFYQEHPDLARR----TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIA 59
Query: 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN--PSIQE---P 174
F P+ IQ P L+ +M+ +Q+G+GKT ++ L + +N P ++ P
Sbjct: 60 RQNFTEPTAIQAQGWPVALSG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 117
Query: 175 QVLCLAPTYELAIQIGEVVAKMGKHITDLSVRY---AVRGENLERNKKITEQIIIGTPGK 231
L LAPT ELA Q+ +V A+ + S A +G + R+ + +I I TPG+
Sbjct: 118 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI-RDLERGVEICIATPGR 176
Query: 232 VLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291
++D+ L+ +L + VLDEAD M+ G + +I ++ D Q +++SAT+ KE
Sbjct: 177 LIDF-LECGKTNLRRTTYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 234
Query: 292 VMEFAQDMVPNPLIIKL 308
V + A+D + + + I +
Sbjct: 235 VRQLAEDFLKDYIHINI 251
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 17/203 (8%)
Query: 115 LKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEP 174
LK + EMGF ++IQ ++ LL +++A +++G+GKT AF + + + P
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEG--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP 123
Query: 175 Q----VLCLAPTYELAIQIGEVVAK-MGKHITDLSVRYAVRGENLERNKKITE-QIIIGT 228
+ VL L+PT ELA+Q V+ + M H+ + + E K II+ T
Sbjct: 124 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 183
Query: 229 PGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY 288
PG++LD F ++ V+DEAD ++ G ++ +I K LP+ Q MLFSAT
Sbjct: 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-GFEEELKQIIKLLPTRRQTMLFSATQ 242
Query: 289 DKEVMEFAQDMVPNPLIIKLKRE 311
++V + A+ I LK+E
Sbjct: 243 TRKVEDLAR--------ISLKKE 257
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 106 EALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLS 165
+A P+LLK + +G P+ IQ A P +L ++I +Q+GTGKT ++ +
Sbjct: 23 DAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQG--IDLIVVAQTGTGKTLSYLMPGFI 80
Query: 166 RVN--PSIQE----PQVLCLAPTYELAIQIGEVVAKMG-KHITDLSVRYAVRGENLERNK 218
++ P +E P +L L PT ELA+ + +K K + + + Y R RN
Sbjct: 81 HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICI-YGGR----NRNG 135
Query: 219 KITE-----QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK 273
+I + III TPG++ D + +L I V+DEAD M+ +F +I+K
Sbjct: 136 QIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKML----DMEFEPQIRK 190
Query: 274 RL---PSDCQIMLFSATYDKEVMEFAQDMVPNPLII 306
L D Q ++ SAT+ V + A + +P+I+
Sbjct: 191 ILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 315 LDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLL 374
L+ IKQ YV + + K+E ++++Y +++ QA+IFC+TR+ L K+ + V +
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 375 SGELTVEQRLSILDRFREGEFKI 397
+L ++R +I+ FR G +I
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRI 83
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 112/230 (48%), Gaps = 19/230 (8%)
Query: 81 LIESKQELEIQRKDPHSPLYSVKTFEAL----HLKPELLKGVYEMGFYAPSKIQETALPT 136
+ +K ++ +Q D P + TF+ L + LL+ + + GF P+ IQ A+P
Sbjct: 6 FLRNKHKIHVQGTDLPDP---IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPV 62
Query: 137 LLADPPHNMIAQSQSGTGKTAAFTLTMLSRV-NPSIQEPQVLCLAPTYELAIQIGEVVAK 195
+L ++A + +G+GKT AF++ +L ++ P+ + + L ++PT ELA QI + K
Sbjct: 63 MLHG--RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK 120
Query: 196 MGKHI---TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYR--FFDLSKIKVF 250
+ + + + AV + I++ TP +++ + LK DL+ ++
Sbjct: 121 ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLI-YLLKQDPPGIDLASVEWL 179
Query: 251 VLDEADVMI--ATQGHQDFSIRIQKRLPSD-CQIMLFSATYDKEVMEFAQ 297
V+DE+D + G +D I S + +FSAT+ +V ++ +
Sbjct: 180 VVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA-----KMGKH 199
M+ ++G+GKT +L P ++ QV C P A+ + + VA K+G+
Sbjct: 112 MVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE- 170
Query: 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEA-DVM 258
V Y++R EN NK I + + T G +L ++ DLS+ +LDEA +
Sbjct: 171 ----EVGYSIRFENKTSNKTILKYM---TDGMLLREAMEDH--DLSRYSCIILDEAHERT 221
Query: 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291
+AT ++ KR P D +I++ SAT D E
Sbjct: 222 LATDILMGLLKQVVKRRP-DLKIIIMSATLDAE 253
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA-----KMGKH 199
M+ ++G+GKT +L P ++ QV C P A+ + + VA K+G+
Sbjct: 112 MVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE- 170
Query: 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEA-DVM 258
V Y++R EN NK I + + T G +L ++ DLS+ +LDEA +
Sbjct: 171 ----EVGYSIRFENKTSNKTILKYM---TDGMLLREAMEDH--DLSRYSCIILDEAHERT 221
Query: 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291
+AT ++ KR P D +I++ SAT D E
Sbjct: 222 LATDILMGLLKQVVKRRP-DLKIIIMSATLDAE 253
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 311 EEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLN 370
EE +L + Q+Y +K ++ ++ + I Q++IFC++ + LA+K+S+ G +
Sbjct: 12 EELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS 70
Query: 371 VGLLSGELTVEQRLSILDRFREG 393
+ ++ E R + FR G
Sbjct: 71 CFYIHAKMRQEHRNRVFHDFRNG 93
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 331 KFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRF 390
+ E +S++ V + +AM+F T+ +A+ + + G L G+L+ +R +L F
Sbjct: 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77
Query: 391 REGEFKI 397
R+GE ++
Sbjct: 78 RQGEVRV 84
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + +T T GK
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPVTYS----TYGK 307
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 308 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I EA+ G+ +IF
Sbjct: 363 SVT------VPHPNI-----EEVALSNTGEIPFYGKAI--PIEAIRG-------GRHLIF 402
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S G+N
Sbjct: 403 CHSKKKCDELAAKLSGLGIN 422
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + +T T GK
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPVTYS----TYGK 307
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 308 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I EA+ G+ +IF
Sbjct: 363 SVT------VPHPNI-----EEVALSNTGEIPFYGKAI--PIEAIRG-------GRHLIF 402
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S G+N
Sbjct: 403 CHSKKKCDELAAKLSGLGIN 422
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + +T T GK
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPVTYS----TYGK 307
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 308 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I EA+ G+ +IF
Sbjct: 363 SVT------VPHPNI-----EEVALSNTGEIPFYGKAI--PIEAIRG-------GRHLIF 402
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S G+N
Sbjct: 403 CHSKKKCDELAAKLSGLGIN 422
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + +T T GK
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPVTYS----TYGK 307
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 308 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I EA+ G+ +IF
Sbjct: 363 SVT------VPHPNI-----EEVALSNTGEIPFYGKAI--PIEAIRG-------GRHLIF 402
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S G+N
Sbjct: 403 CHSKKKCDELAAKLSGLGIN 422
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + +T T GK
Sbjct: 235 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPVTYS----TYGK 286
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 287 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 341
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I EA+ G+ +IF
Sbjct: 342 SVT------VPHPNI-----EEVALSNTGEIPFYGKAI--PIEAIRG-------GRHLIF 381
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S G+N
Sbjct: 382 CHSKKKCDELAAKLSGLGIN 401
>pdb|8OHM|A Chain A, Crystal Structure Of Rna Helicase From Genotype 1b
Hepatitis C Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + IT T GK
Sbjct: 32 QGYKVLVLNPSVAATLGFGVYMSK--AHGIDPNIRTGVRA--ITTGGPITYS----TYGK 83
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 84 FLADGGCSGGAYD-----IIICDECHSTDSTSILGIGTVLDQAETAGARLVVLATATPPG 138
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L N + K I + V+ G+ +IF
Sbjct: 139 SVT------VPHPNI-----EEVALSNTGEIPFYGKAIPIE---------VIRGGRHLIF 178
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S GLN
Sbjct: 179 CHSKKKCDELAAKLSALGLN 198
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 36/155 (23%)
Query: 128 KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY---- 183
++ E P L + P N + +GTGKTA L +L R+ VL P Y
Sbjct: 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARL-VLRRLEARASSLGVLV-KPIYVNAR 87
Query: 184 --ELAIQIGEVVAK-MGKHI--TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLK 238
E ++ +A+ +G + T LSV GE ER L
Sbjct: 88 HRETPYRVASAIAEAVGVRVPFTGLSV-----GEVYER--------------------LV 122
Query: 239 YRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK 273
R L I + VLDE D + G QD RI +
Sbjct: 123 KRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITR 157
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 36/77 (46%)
Query: 320 QHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379
+H V+ + KF + ++ +IFC T++ L +++ G + G +
Sbjct: 11 EHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMI 70
Query: 380 VEQRLSILDRFREGEFK 396
E R +++ F+ GE++
Sbjct: 71 QEDRFDVMNEFKRGEYR 87
>pdb|2F55|A Chain A, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|B Chain B, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|C Chain C, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
Length = 435
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + IT T GK
Sbjct: 32 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGGSITYS----TYGK 83
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 84 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 138
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE L N + K I EA+ G+ +IF
Sbjct: 139 SVT------VPHPNI-----EEIGLSNNGEIPFYGKAI--PIEAIKG-------GRHLIF 178
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K++ GLN
Sbjct: 179 CHSKKKCDELAAKLTGLGLN 198
>pdb|3KQL|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQL|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQN|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|C Chain C, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|D Chain D, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|E Chain E, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|F Chain F, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 437
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + IT T GK
Sbjct: 33 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPITYS----TYGK 84
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 85 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 139
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L + + K I + I G G+ +IF
Sbjct: 140 SVT------VPHPNI-----EEVALSSTGEIPFYGKAI-----PIETIKG----GRHLIF 179
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S GLN
Sbjct: 180 CHSKKKCDELAAKLSGLGLN 199
>pdb|3KQH|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQH|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 436
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
Q +VL L P+ + G ++K H D ++R VR + IT T GK
Sbjct: 33 QGYKVLVLNPSVAATLGFGAYMSK--AHGIDPNIRTGVR--TITTGAPITYS----TYGK 84
Query: 232 VL-DWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290
L D G +D + + DE +T ++ Q ++L +AT
Sbjct: 85 FLADGGCSGGAYD-----IIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 139
Query: 291 EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIF 350
V VP+P I EE +L + + K I + I G G+ +IF
Sbjct: 140 SVT------VPHPNI-----EEVALSSTGEIPFYGKAI-----PIETIKG----GRHLIF 179
Query: 351 CHTRKTAAWLAEKMSKEGLN 370
CH++K LA K+S GLN
Sbjct: 180 CHSKKKCDELAAKLSGLGLN 199
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 94 DPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQE-TALPTLLADPPHNMIAQSQSG 152
D H+P Y++ A P+ L Y GF P +Q + L + L D N + +
Sbjct: 48 DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT 107
Query: 153 TGKTAAFTLTMLSRVNPS----IQEPQVLCLAPTYELAIQIGEVVA----KMGKHITDLS 204
G A T+ V+ I EP C P + A I + K G I+ S
Sbjct: 108 VGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTIS--S 165
Query: 205 VRYAVRGENLER--NKKITEQIIIGTP----GKVLD 234
+ + LE N+K T+ III TP GKV+D
Sbjct: 166 ADWVLDNNELEALFNEK-TKMIIINTPHNPLGKVMD 200
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 94 DPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQE-TALPTLLADPPHNMIAQSQSG 152
D H+P Y++ A P+ L Y GF P +Q + L + L D N + +
Sbjct: 48 DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT 107
Query: 153 TGKTAAFTLTMLSRVNPS----IQEPQVLCLAPTYELAIQIGEVVA----KMGKHITDLS 204
G A T+ V+ I EP C P + A I + K G I+ S
Sbjct: 108 VGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTIS--S 165
Query: 205 VRYAVRGENLER--NKKITEQIIIGTP----GKVLD 234
+ + LE N+K T+ III TP GKV+D
Sbjct: 166 ADWVLDNNELEALFNEK-TKMIIINTPHNPLGKVMD 200
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 685 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 744
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 745 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 802
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 803 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 836
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 685 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 744
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 745 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 802
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 803 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 836
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 686 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 745
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 746 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 803
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 804 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 837
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 686 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 745
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 746 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 803
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 804 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 837
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 686 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 745
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 746 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 803
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 804 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 837
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 198 KHITDLSVRYAV----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFF--------DLS 245
K + + S+R+A G+N RN I ++G+ GK ++ LKY DL
Sbjct: 686 KSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLG 745
Query: 246 KIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDC---QIMLFSAT-YDKEVMEFAQDMV 300
+ +E D +G D + + RL S C I+L +AT Y+K+ M DM
Sbjct: 746 QQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMN-TSDM- 803
Query: 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335
+P I L + K + + K I +KF V
Sbjct: 804 -HPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV 837
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 314 SLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGL 373
SL ++Q+YV K+ +EK + ++ V+ Q +IF + + LA+ + ++
Sbjct: 2 SLHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 374 LSGELTVEQRLSILDRFREGEFKI 397
+ + E+RLS +F++ + +I
Sbjct: 61 IHRGMPQEERLSRYQQFKDFQRRI 84
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 137 LLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188
++++ P N + Q G+GKT L +L Q + PT LAIQ
Sbjct: 384 MISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQ 432
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE 377
I Q Y +++ K + ++ ++++F R+ LA + + G+N L GE
Sbjct: 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGE 63
Query: 378 LTVEQRLSILDRFREGEFKI 397
+ +R + R EG +
Sbjct: 64 MVQGKRNEAIKRLTEGRVNV 83
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 258 MIATQGHQDFSIRIQKRLPSDCQ--IMLFSATYDKEVMEFA-------QDMVPNPLIIKL 308
+I T GH DFS + + L + C+ ++L A+ E A QD+V P+I K+
Sbjct: 77 LIDTPGHVDFSYEVSRALAA-CEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKI 135
Query: 309 KREEESLDNIKQH 321
+D +K+
Sbjct: 136 DLPSADVDRVKKQ 148
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 258 MIATQGHQDFSIRIQKRLPSDCQ--IMLFSATYDKEVMEFA-------QDMVPNPLIIKL 308
+I T GH DFS + + L + C+ ++L A+ E A QD+V P+I K+
Sbjct: 77 LIDTPGHVDFSYEVSRALAA-CEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKI 135
Query: 309 KREEESLDNIKQH 321
+D +K+
Sbjct: 136 DLPSADVDRVKKQ 148
>pdb|2ZKR|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 178
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 205 VRYAVRGENLERNKKITEQIII--GTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262
RY VR + RN+KI + ++L+ GLK R ++L K D + Q
Sbjct: 53 ARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNN--FSDTGNFGFGIQ 110
Query: 263 GHQDFSIR 270
H D I+
Sbjct: 111 EHIDLGIK 118
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 348 MIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT---------VEQRLSILDRFREGEFKI 397
++F + R+TA + ++ K+G+ G+ + EQ+L ILD F GEF +
Sbjct: 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKL-ILDEFARGEFNV 422
>pdb|3D8P|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
pdb|3D8P|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
Length = 163
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYV 323
I+ ++ +Y +E++EF + N IK+ R+++ L+NI+ +Y+
Sbjct: 5 NIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYL 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,664,834
Number of Sequences: 62578
Number of extensions: 408630
Number of successful extensions: 1215
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 87
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)