Query psy11867
Match_columns 399
No_of_seqs 304 out of 2384
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:58:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0332|consensus 100.0 3.2E-65 7E-70 459.2 23.7 329 61-399 57-385 (477)
2 KOG0330|consensus 100.0 5E-58 1.1E-62 415.0 23.1 295 100-399 58-355 (476)
3 KOG0328|consensus 100.0 4E-56 8.8E-61 386.9 24.0 297 98-399 22-321 (400)
4 KOG0331|consensus 100.0 2.2E-55 4.8E-60 421.9 27.1 290 104-399 92-396 (519)
5 COG0513 SrmB Superfamily II DN 100.0 1.3E-54 2.8E-59 432.3 32.6 293 103-399 29-328 (513)
6 KOG0338|consensus 100.0 1E-54 2.3E-59 404.9 23.2 294 102-399 180-481 (691)
7 KOG0326|consensus 100.0 8.5E-53 1.8E-57 371.9 16.5 291 102-399 84-377 (459)
8 KOG0343|consensus 100.0 7E-51 1.5E-55 382.4 26.0 292 102-398 68-369 (758)
9 KOG0333|consensus 100.0 3.1E-50 6.8E-55 376.2 28.5 293 101-399 243-572 (673)
10 PRK11776 ATP-dependent RNA hel 100.0 1.7E-49 3.7E-54 394.5 33.1 292 102-399 3-297 (460)
11 PTZ00110 helicase; Provisional 100.0 1.6E-49 3.5E-54 399.2 30.7 294 100-399 127-432 (545)
12 KOG0340|consensus 100.0 4.5E-50 9.8E-55 359.4 23.5 293 102-399 6-309 (442)
13 PRK11634 ATP-dependent RNA hel 100.0 4.9E-49 1.1E-53 399.4 33.1 293 102-399 5-300 (629)
14 PRK04837 ATP-dependent RNA hel 100.0 9.5E-49 2.1E-53 385.1 33.0 292 102-399 7-310 (423)
15 PRK04537 ATP-dependent RNA hel 100.0 1.1E-48 2.4E-53 394.5 32.4 292 103-399 9-312 (572)
16 PLN00206 DEAD-box ATP-dependen 100.0 2.3E-48 4.9E-53 389.8 33.8 304 86-399 107-423 (518)
17 PRK10590 ATP-dependent RNA hel 100.0 2.7E-48 5.9E-53 384.5 32.6 290 104-399 2-300 (456)
18 KOG0342|consensus 100.0 3.4E-49 7.4E-54 367.5 24.4 296 100-399 79-385 (543)
19 KOG0345|consensus 100.0 1.6E-48 3.4E-53 360.9 27.0 291 104-398 5-311 (567)
20 KOG0339|consensus 100.0 9.8E-49 2.1E-53 364.6 25.4 298 97-399 217-523 (731)
21 PRK11192 ATP-dependent RNA hel 100.0 2.2E-47 4.7E-52 377.0 33.7 291 104-399 2-300 (434)
22 KOG0346|consensus 100.0 8.2E-49 1.8E-53 359.8 20.5 293 103-399 19-323 (569)
23 PRK01297 ATP-dependent RNA hel 100.0 2.8E-46 6E-51 372.5 34.4 292 102-399 86-390 (475)
24 KOG0341|consensus 100.0 1.2E-48 2.6E-53 353.6 15.6 310 81-399 151-476 (610)
25 KOG0335|consensus 100.0 5.1E-47 1.1E-51 358.4 24.6 313 81-399 53-392 (482)
26 KOG0336|consensus 100.0 7.5E-47 1.6E-51 344.0 22.6 292 101-399 217-520 (629)
27 KOG0327|consensus 100.0 4.3E-47 9.4E-52 344.7 20.7 290 102-399 25-318 (397)
28 PTZ00424 helicase 45; Provisio 100.0 3E-45 6.4E-50 358.8 33.4 293 102-399 27-322 (401)
29 KOG0348|consensus 100.0 7.3E-46 1.6E-50 347.6 25.9 295 100-398 133-501 (708)
30 KOG0334|consensus 100.0 7E-46 1.5E-50 373.4 22.3 305 88-399 353-668 (997)
31 KOG4284|consensus 100.0 6.5E-46 1.4E-50 354.2 19.4 295 102-399 24-327 (980)
32 KOG0347|consensus 100.0 8.4E-46 1.8E-50 348.2 17.5 297 98-399 176-518 (731)
33 KOG0337|consensus 100.0 8.8E-44 1.9E-48 325.2 19.3 292 102-399 20-316 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 8.8E-41 1.9E-45 345.4 28.0 279 109-399 20-334 (742)
35 KOG0344|consensus 100.0 3.8E-41 8.2E-46 320.7 20.1 312 82-399 114-443 (593)
36 KOG0350|consensus 100.0 7.2E-40 1.6E-44 305.3 20.6 295 102-399 126-488 (620)
37 PRK02362 ski2-like helicase; P 100.0 3.8E-38 8.3E-43 328.6 25.6 285 104-399 2-334 (737)
38 PRK00254 ski2-like helicase; P 100.0 3.6E-37 7.8E-42 320.5 26.5 283 104-399 2-326 (720)
39 KOG0329|consensus 100.0 8E-38 1.7E-42 269.1 16.6 252 103-358 42-297 (387)
40 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-35 2.6E-40 295.1 26.1 261 120-399 6-281 (470)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.2E-35 1.6E-39 296.8 29.0 261 121-392 12-323 (844)
42 PLN03137 ATP-dependent DNA hel 100.0 5.8E-35 1.3E-39 301.7 27.8 274 108-399 442-735 (1195)
43 PRK09401 reverse gyrase; Revie 100.0 7.6E-35 1.7E-39 311.0 27.9 262 116-399 71-381 (1176)
44 PRK01172 ski2-like helicase; P 100.0 7.2E-35 1.6E-39 301.9 24.6 283 104-399 2-316 (674)
45 PRK13767 ATP-dependent helicas 100.0 9.2E-35 2E-39 306.3 25.6 281 110-399 18-345 (876)
46 COG1201 Lhr Lhr-like helicases 100.0 9.6E-34 2.1E-38 287.1 26.3 279 110-399 8-309 (814)
47 PRK11057 ATP-dependent DNA hel 100.0 1.7E-33 3.6E-38 287.1 27.4 268 111-399 10-291 (607)
48 PRK10689 transcription-repair 100.0 5.3E-33 1.1E-37 296.3 29.4 265 113-399 589-866 (1147)
49 TIGR01389 recQ ATP-dependent D 100.0 4.4E-33 9.5E-38 284.5 25.2 262 117-399 4-279 (591)
50 TIGR00580 mfd transcription-re 100.0 1.6E-32 3.6E-37 286.8 29.3 268 110-399 436-717 (926)
51 TIGR01054 rgy reverse gyrase. 100.0 1.3E-32 2.8E-37 294.2 27.2 266 113-399 66-380 (1171)
52 PRK14701 reverse gyrase; Provi 100.0 1.3E-32 2.7E-37 299.8 27.4 269 112-399 66-383 (1638)
53 PRK10917 ATP-dependent DNA hel 100.0 4E-31 8.7E-36 272.4 28.9 267 112-399 248-536 (681)
54 COG1202 Superfamily II helicas 100.0 2.2E-31 4.8E-36 252.4 23.7 284 104-399 195-495 (830)
55 cd00268 DEADc DEAD-box helicas 100.0 4E-31 8.7E-36 234.6 21.7 197 105-306 1-202 (203)
56 COG1204 Superfamily II helicas 100.0 6E-31 1.3E-35 269.9 22.0 282 110-399 16-345 (766)
57 TIGR00643 recG ATP-dependent D 100.0 4.5E-30 9.8E-35 263.0 28.2 265 114-399 225-513 (630)
58 PRK09751 putative ATP-dependen 100.0 1.5E-30 3.2E-35 279.3 24.4 250 147-399 1-332 (1490)
59 COG1205 Distinct helicase fami 100.0 1.7E-29 3.8E-34 262.5 26.5 283 110-399 55-369 (851)
60 PHA02653 RNA helicase NPH-II; 100.0 4.6E-29 1E-33 252.8 24.6 255 127-399 166-451 (675)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.7E-28 3.7E-33 254.3 27.5 243 142-399 17-267 (819)
62 KOG0349|consensus 100.0 9.4E-30 2E-34 234.0 15.4 226 172-399 285-563 (725)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2E-29 4.2E-34 243.2 18.3 248 144-399 1-283 (358)
64 PRK11664 ATP-dependent RNA hel 100.0 2.1E-28 4.6E-33 254.1 25.0 248 134-399 14-270 (812)
65 KOG0952|consensus 100.0 7E-29 1.5E-33 249.2 20.1 273 120-399 105-427 (1230)
66 PHA02558 uvsW UvsW helicase; P 100.0 3.8E-28 8.3E-33 242.8 23.9 259 123-399 112-399 (501)
67 COG0514 RecQ Superfamily II DN 100.0 6.1E-28 1.3E-32 236.9 22.1 265 116-399 7-285 (590)
68 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-26 3.9E-31 221.2 24.1 257 129-399 1-323 (357)
69 PF00270 DEAD: DEAD/DEAH box h 99.9 5E-26 1.1E-30 195.7 17.1 162 127-294 1-168 (169)
70 PRK12898 secA preprotein trans 99.9 1.1E-24 2.5E-29 217.8 24.0 263 124-399 102-526 (656)
71 KOG0951|consensus 99.9 4.3E-25 9.2E-30 224.8 20.3 284 109-399 295-638 (1674)
72 PRK13766 Hef nuclease; Provisi 99.9 4.2E-24 9E-29 225.5 26.9 270 122-399 12-428 (773)
73 PRK09200 preprotein translocas 99.9 8.8E-24 1.9E-28 215.8 23.6 262 121-394 75-478 (790)
74 TIGR00963 secA preprotein tran 99.9 1.7E-23 3.7E-28 210.6 24.0 265 121-399 53-458 (745)
75 TIGR03714 secA2 accessory Sec 99.9 2.8E-23 6E-28 210.3 24.9 263 121-395 67-475 (762)
76 COG1111 MPH1 ERCC4-like helica 99.9 9.2E-23 2E-27 192.6 23.7 159 122-288 12-172 (542)
77 KOG0351|consensus 99.9 1.7E-23 3.7E-28 216.8 20.1 266 118-399 257-540 (941)
78 COG1200 RecG RecG-like helicas 99.9 1E-22 2.2E-27 199.9 24.0 270 110-399 247-538 (677)
79 PRK05580 primosome assembly pr 99.9 3.1E-22 6.8E-27 205.9 26.2 258 125-399 144-485 (679)
80 PRK09694 helicase Cas3; Provis 99.9 2.1E-22 4.5E-27 209.2 24.3 272 123-399 284-626 (878)
81 PRK13104 secA preprotein trans 99.9 2.5E-22 5.5E-27 204.9 23.3 127 125-259 82-215 (896)
82 TIGR00603 rad25 DNA repair hel 99.9 4.4E-22 9.6E-27 201.5 21.3 254 124-399 254-547 (732)
83 PRK11131 ATP-dependent RNA hel 99.9 7.6E-22 1.6E-26 209.2 23.8 236 142-399 89-342 (1294)
84 KOG0352|consensus 99.9 3E-23 6.5E-28 191.1 11.5 278 113-399 6-310 (641)
85 KOG0354|consensus 99.9 2.1E-21 4.6E-26 193.3 23.2 173 110-289 47-222 (746)
86 COG1061 SSL2 DNA or RNA helica 99.9 6.2E-22 1.3E-26 194.5 18.3 257 123-399 34-337 (442)
87 KOG0353|consensus 99.9 4.8E-22 1E-26 180.8 16.0 285 106-399 74-372 (695)
88 PRK12904 preprotein translocas 99.9 4.7E-21 1E-25 195.4 22.8 264 121-399 78-483 (830)
89 PRK12899 secA preprotein trans 99.9 2.7E-21 5.8E-26 197.2 14.3 147 106-259 65-228 (970)
90 COG1197 Mfd Transcription-repa 99.8 2.3E-19 4.9E-24 185.6 24.9 269 110-399 579-860 (1139)
91 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2.8E-19 6.1E-24 190.5 25.1 242 142-399 82-335 (1283)
92 COG4581 Superfamily II RNA hel 99.8 2.2E-19 4.7E-24 185.6 20.7 263 120-398 115-474 (1041)
93 TIGR00595 priA primosomal prot 99.8 3.2E-19 7E-24 177.5 20.8 235 146-399 1-317 (505)
94 smart00487 DEXDc DEAD-like hel 99.8 4.6E-19 9.9E-24 155.5 19.3 185 120-310 3-192 (201)
95 PRK04914 ATP-dependent helicas 99.8 2.4E-18 5.2E-23 180.2 24.3 269 125-399 152-551 (956)
96 PRK13107 preprotein translocas 99.8 5.1E-19 1.1E-23 180.4 17.9 127 125-259 82-215 (908)
97 KOG0948|consensus 99.8 5.6E-19 1.2E-23 172.8 16.4 255 124-398 128-476 (1041)
98 PRK11448 hsdR type I restricti 99.8 1.2E-18 2.6E-23 186.2 19.3 270 124-399 412-761 (1123)
99 KOG0947|consensus 99.8 3.6E-18 7.8E-23 171.0 17.2 258 124-398 296-660 (1248)
100 COG1110 Reverse gyrase [DNA re 99.8 2E-17 4.3E-22 167.5 21.2 262 116-399 73-388 (1187)
101 COG4098 comFA Superfamily II D 99.8 4.3E-17 9.2E-22 147.2 19.8 252 125-399 97-360 (441)
102 KOG0950|consensus 99.8 9.9E-18 2.2E-22 168.8 14.2 273 110-399 207-553 (1008)
103 COG1203 CRISPR-associated heli 99.7 1.4E-16 3.1E-21 165.7 18.9 262 125-391 195-487 (733)
104 TIGR01407 dinG_rel DnaQ family 99.7 6.7E-15 1.5E-19 156.2 24.4 83 110-197 231-317 (850)
105 cd00046 DEXDc DEAD-like helica 99.7 1.6E-15 3.4E-20 125.3 15.4 141 143-288 1-144 (144)
106 PRK12906 secA preprotein trans 99.7 3.7E-15 8E-20 152.0 20.1 261 124-395 79-491 (796)
107 TIGR00348 hsdR type I site-spe 99.7 6.4E-15 1.4E-19 151.9 19.9 154 125-288 238-402 (667)
108 PF04851 ResIII: Type III rest 99.6 6.9E-16 1.5E-20 134.1 10.2 153 125-289 3-183 (184)
109 KOG0951|consensus 99.6 2.7E-15 5.8E-20 154.2 12.6 308 72-399 1086-1436(1674)
110 COG1643 HrpA HrpA-like helicas 99.6 9.4E-14 2E-18 143.2 22.0 243 142-397 65-316 (845)
111 COG4096 HsdR Type I site-speci 99.6 2.3E-14 4.9E-19 143.4 16.4 253 123-392 163-477 (875)
112 PLN03142 Probable chromatin-re 99.6 1.2E-13 2.7E-18 145.7 21.2 258 125-393 169-536 (1033)
113 KOG0920|consensus 99.5 8.7E-12 1.9E-16 128.5 21.5 263 126-398 174-474 (924)
114 COG1198 PriA Primosomal protei 99.4 8.1E-12 1.7E-16 127.2 18.9 156 124-294 197-365 (730)
115 KOG0949|consensus 99.4 8.5E-12 1.8E-16 126.2 18.3 161 124-290 510-673 (1330)
116 PRK12326 preprotein translocas 99.4 2.8E-11 6.1E-16 121.6 21.8 127 125-259 78-211 (764)
117 KOG0922|consensus 99.4 4.3E-11 9.2E-16 117.6 22.2 239 142-398 66-320 (674)
118 KOG1123|consensus 99.4 4E-12 8.7E-17 120.3 13.5 251 123-393 300-587 (776)
119 COG0556 UvrB Helicase subunit 99.3 1.3E-10 2.8E-15 111.4 19.5 56 344-399 446-501 (663)
120 PRK13103 secA preprotein trans 99.3 9.4E-11 2E-15 120.6 17.8 128 124-259 81-215 (913)
121 PRK07246 bifunctional ATP-depe 99.3 2.2E-11 4.9E-16 128.0 12.7 74 121-200 242-319 (820)
122 KOG0385|consensus 99.3 1.6E-10 3.5E-15 114.7 17.5 257 125-394 167-537 (971)
123 KOG4150|consensus 99.3 1E-11 2.2E-16 119.2 8.4 275 118-397 279-586 (1034)
124 TIGR03117 cas_csf4 CRISPR-asso 99.3 2.3E-11 4.9E-16 122.9 11.1 55 142-197 16-70 (636)
125 CHL00122 secA preprotein trans 99.2 4.9E-10 1.1E-14 114.9 19.1 130 121-259 73-209 (870)
126 PRK12900 secA preprotein trans 99.2 5.6E-10 1.2E-14 115.5 18.2 127 125-259 138-271 (1025)
127 PRK12902 secA preprotein trans 99.2 1.1E-09 2.4E-14 112.3 19.9 127 125-259 85-218 (939)
128 KOG0387|consensus 99.2 4.6E-09 1E-13 104.9 23.6 272 103-395 190-598 (923)
129 PF07652 Flavi_DEAD: Flaviviru 99.2 1.2E-10 2.7E-15 94.3 8.5 136 142-292 4-140 (148)
130 TIGR00631 uvrb excinuclease AB 99.2 3.9E-09 8.5E-14 108.3 21.2 71 329-399 425-497 (655)
131 PF00176 SNF2_N: SNF2 family N 99.1 2.9E-10 6.3E-15 106.7 10.3 154 129-288 1-172 (299)
132 PF06862 DUF1253: Protein of u 99.1 4.9E-08 1.1E-12 94.4 24.2 230 168-399 32-355 (442)
133 PRK12903 secA preprotein trans 99.1 6.2E-09 1.3E-13 106.5 18.8 129 122-259 76-211 (925)
134 KOG0924|consensus 99.1 1.4E-08 3E-13 100.0 19.8 252 129-399 360-628 (1042)
135 KOG0923|consensus 99.1 1.5E-08 3.3E-13 99.4 20.1 253 127-398 267-536 (902)
136 smart00488 DEXDc2 DEAD-like he 99.1 2.6E-10 5.6E-15 106.1 7.7 72 125-196 8-84 (289)
137 smart00489 DEXDc3 DEAD-like he 99.1 2.6E-10 5.6E-15 106.1 7.7 72 125-196 8-84 (289)
138 KOG1000|consensus 99.1 3.9E-08 8.4E-13 93.7 21.3 257 124-393 197-541 (689)
139 KOG0925|consensus 99.1 7.5E-09 1.6E-13 98.2 16.3 257 102-375 24-293 (699)
140 KOG0389|consensus 99.0 2E-09 4.4E-14 107.3 12.0 130 125-259 399-537 (941)
141 KOG0926|consensus 99.0 6.8E-09 1.5E-13 103.7 15.3 226 124-367 243-504 (1172)
142 KOG0390|consensus 99.0 3.3E-08 7.2E-13 100.8 20.6 153 125-287 238-413 (776)
143 PF02399 Herpes_ori_bp: Origin 99.0 2.3E-08 5E-13 101.7 19.4 229 142-382 49-320 (824)
144 KOG0953|consensus 99.0 3E-09 6.6E-14 102.4 12.4 217 142-399 191-414 (700)
145 PRK08074 bifunctional ATP-depe 99.0 3.5E-09 7.6E-14 113.5 13.1 65 124-191 256-323 (928)
146 COG4889 Predicted helicase [Ge 99.0 4.9E-10 1.1E-14 112.6 5.8 146 104-259 141-317 (1518)
147 KOG0392|consensus 99.0 8.5E-09 1.8E-13 107.1 13.9 152 125-287 975-1137(1549)
148 KOG0952|consensus 98.9 2.2E-10 4.8E-15 117.2 1.2 136 123-261 925-1061(1230)
149 PF07517 SecA_DEAD: SecA DEAD- 98.8 2.8E-08 6E-13 90.4 11.2 129 123-259 75-210 (266)
150 TIGR02562 cas3_yersinia CRISPR 98.8 1.4E-07 3.1E-12 98.6 16.6 167 125-295 408-641 (1110)
151 KOG0384|consensus 98.8 1.9E-07 4.2E-12 97.5 15.7 256 124-394 369-749 (1373)
152 PRK11747 dinG ATP-dependent DN 98.7 5E-08 1.1E-12 101.5 10.2 65 124-190 24-95 (697)
153 PRK14873 primosome assembly pr 98.6 4.7E-07 1E-11 93.0 12.6 135 148-296 166-311 (665)
154 KOG1002|consensus 98.6 2.3E-05 4.9E-10 75.2 21.7 128 124-258 183-328 (791)
155 PRK05298 excinuclease ABC subu 98.5 9.3E-07 2E-11 91.5 13.0 69 331-399 431-501 (652)
156 COG0610 Type I site-specific r 98.5 6.1E-07 1.3E-11 96.2 11.8 139 142-288 273-413 (962)
157 PRK15483 type III restriction- 98.5 5.4E-07 1.2E-11 94.4 8.9 142 143-290 60-240 (986)
158 cd00079 HELICc Helicase superf 98.4 2.3E-06 4.9E-11 69.6 10.0 71 329-399 11-83 (131)
159 KOG4439|consensus 98.4 8.2E-06 1.8E-10 81.2 14.4 132 125-258 325-475 (901)
160 PF02562 PhoH: PhoH-like prote 98.4 1.9E-06 4E-11 75.5 8.9 141 124-286 3-154 (205)
161 PF13086 AAA_11: AAA domain; P 98.4 2E-06 4.3E-11 77.4 9.2 67 126-195 2-75 (236)
162 PF13604 AAA_30: AAA domain; P 98.3 2.7E-06 5.8E-11 74.7 8.7 125 125-286 1-129 (196)
163 KOG2340|consensus 98.3 1.3E-05 2.7E-10 77.5 13.5 272 124-399 215-607 (698)
164 KOG0391|consensus 98.2 7.8E-06 1.7E-10 85.2 9.1 158 125-294 615-782 (1958)
165 PF13872 AAA_34: P-loop contai 98.1 2.4E-05 5.2E-10 71.7 10.3 164 126-295 38-227 (303)
166 PF09848 DUF2075: Uncharacteri 98.1 1.4E-05 3E-10 77.0 9.3 110 143-274 2-117 (352)
167 KOG0386|consensus 98.0 1.3E-05 2.8E-10 82.7 8.0 65 330-394 710-776 (1157)
168 PRK10536 hypothetical protein; 98.0 4.1E-05 8.8E-10 69.0 9.9 143 121-284 55-209 (262)
169 COG1199 DinG Rad3-related DNA 98.0 7.8E-06 1.7E-10 85.4 6.2 76 119-196 9-86 (654)
170 TIGR00604 rad3 DNA repair heli 98.0 1.1E-05 2.3E-10 84.8 6.9 77 121-197 6-84 (705)
171 PRK12901 secA preprotein trans 97.9 2E-05 4.3E-10 82.6 7.5 127 125-259 169-303 (1112)
172 PF13245 AAA_19: Part of AAA d 97.9 2.8E-05 6.1E-10 56.9 5.6 51 142-193 10-62 (76)
173 TIGR01447 recD exodeoxyribonuc 97.9 0.0001 2.2E-09 75.2 11.5 142 127-287 147-295 (586)
174 COG0653 SecA Preprotein transl 97.8 0.00044 9.5E-09 71.6 14.9 127 125-259 80-213 (822)
175 PRK10875 recD exonuclease V su 97.8 0.00013 2.8E-09 74.6 10.5 141 127-287 154-301 (615)
176 PF12340 DUF3638: Protein of u 97.8 0.00014 3.1E-09 64.3 9.3 152 104-260 4-186 (229)
177 TIGR01448 recD_rel helicase, p 97.7 0.00024 5.2E-09 74.5 11.6 127 124-287 322-452 (720)
178 KOG1802|consensus 97.7 0.0002 4.4E-09 71.2 9.5 75 119-197 404-478 (935)
179 COG3587 Restriction endonuclea 97.7 0.00016 3.6E-09 73.8 8.9 146 142-293 74-247 (985)
180 PF00580 UvrD-helicase: UvrD/R 97.5 0.00017 3.7E-09 67.9 6.4 123 126-256 1-125 (315)
181 KOG0989|consensus 97.5 0.0005 1.1E-08 62.8 8.4 59 243-303 126-187 (346)
182 KOG1803|consensus 97.5 0.00061 1.3E-08 67.4 9.5 65 125-193 185-249 (649)
183 COG1875 NYN ribonuclease and A 97.4 0.00026 5.5E-09 66.1 5.6 70 120-189 223-292 (436)
184 KOG0388|consensus 97.3 0.00039 8.5E-09 69.7 5.4 152 126-288 568-733 (1185)
185 KOG0921|consensus 97.3 0.0016 3.4E-08 67.1 9.7 249 142-399 393-705 (1282)
186 PF13401 AAA_22: AAA domain; P 97.2 0.0007 1.5E-08 54.9 5.6 20 142-161 4-23 (131)
187 PRK06526 transposase; Provisio 97.2 0.00071 1.5E-08 61.8 5.8 20 142-161 98-117 (254)
188 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0038 8.3E-08 65.8 11.8 63 124-190 351-413 (744)
189 PRK04296 thymidine kinase; Pro 97.1 0.00049 1.1E-08 60.1 4.3 110 142-287 2-114 (190)
190 COG0553 HepA Superfamily II DN 97.1 0.0016 3.5E-08 70.3 8.8 135 123-260 336-486 (866)
191 PRK12723 flagellar biosynthesi 97.1 0.0038 8.2E-08 60.4 10.2 131 142-299 174-309 (388)
192 PRK08181 transposase; Validate 97.1 0.0048 1E-07 56.8 10.4 45 142-190 106-150 (269)
193 TIGR02760 TraI_TIGR conjugativ 97.1 0.043 9.4E-07 63.8 20.0 237 125-394 429-686 (1960)
194 COG1444 Predicted P-loop ATPas 97.0 0.007 1.5E-07 62.5 11.9 157 110-289 199-357 (758)
195 cd00009 AAA The AAA+ (ATPases 97.0 0.0068 1.5E-07 49.5 9.9 19 141-159 18-36 (151)
196 PRK13889 conjugal transfer rel 97.0 0.0031 6.8E-08 67.7 9.3 124 125-287 346-470 (988)
197 KOG1132|consensus 96.9 0.0019 4.1E-08 66.6 6.6 74 124-197 20-134 (945)
198 COG3421 Uncharacterized protei 96.9 0.0011 2.3E-08 65.6 4.6 142 148-291 3-168 (812)
199 PRK14722 flhF flagellar biosyn 96.9 0.0066 1.4E-07 58.3 9.7 171 103-299 81-269 (374)
200 PRK11889 flhF flagellar biosyn 96.9 0.0078 1.7E-07 57.8 9.9 131 142-300 241-375 (436)
201 PF00271 Helicase_C: Helicase 96.9 0.0014 3E-08 48.0 3.9 38 362-399 1-38 (78)
202 PRK13826 Dtr system oriT relax 96.8 0.012 2.5E-07 63.9 12.1 137 110-287 367-505 (1102)
203 PRK05642 DNA replication initi 96.8 0.0029 6.3E-08 57.2 6.5 47 245-291 96-142 (234)
204 PRK14974 cell division protein 96.8 0.0088 1.9E-07 56.8 9.8 132 142-299 140-275 (336)
205 TIGR00376 DNA helicase, putati 96.8 0.0029 6.3E-08 65.5 6.9 68 124-195 156-223 (637)
206 PF05876 Terminase_GpA: Phage 96.8 0.0045 9.7E-08 63.1 8.1 127 125-260 16-148 (557)
207 PHA02533 17 large terminase pr 96.8 0.014 3E-07 59.1 11.5 150 125-288 59-210 (534)
208 PF05970 PIF1: PIF1-like helic 96.8 0.0039 8.4E-08 60.3 7.3 60 126-188 2-65 (364)
209 smart00382 AAA ATPases associa 96.7 0.0026 5.7E-08 51.5 5.1 41 142-185 2-42 (148)
210 PF14617 CMS1: U3-containing 9 96.7 0.003 6.4E-08 57.1 5.6 84 171-257 124-212 (252)
211 COG1419 FlhF Flagellar GTP-bin 96.7 0.021 4.6E-07 54.8 11.3 134 142-301 203-337 (407)
212 smart00490 HELICc helicase sup 96.7 0.003 6.5E-08 46.2 4.6 41 359-399 2-42 (82)
213 PRK10919 ATP-dependent DNA hel 96.7 0.0044 9.4E-08 64.8 7.3 69 125-197 2-71 (672)
214 KOG1805|consensus 96.5 0.0056 1.2E-07 63.9 6.9 137 110-259 658-809 (1100)
215 PF00308 Bac_DnaA: Bacterial d 96.5 0.0046 9.9E-08 55.3 5.6 107 144-291 36-143 (219)
216 PRK05703 flhF flagellar biosyn 96.5 0.021 4.5E-07 56.3 10.6 129 142-299 221-354 (424)
217 PRK08084 DNA replication initi 96.5 0.0054 1.2E-07 55.4 6.0 18 142-159 45-62 (235)
218 PRK08727 hypothetical protein; 96.5 0.012 2.6E-07 53.1 7.9 17 143-159 42-58 (233)
219 TIGR01075 uvrD DNA helicase II 96.5 0.0076 1.6E-07 63.7 7.6 70 124-197 3-73 (715)
220 PF00448 SRP54: SRP54-type pro 96.5 0.01 2.2E-07 52.0 7.2 53 245-297 82-134 (196)
221 PRK00149 dnaA chromosomal repl 96.4 0.0072 1.6E-07 60.2 6.9 45 143-189 149-193 (450)
222 PF05127 Helicase_RecD: Helica 96.4 0.00087 1.9E-08 57.3 0.3 124 146-289 1-124 (177)
223 PRK13894 conjugal transfer ATP 96.4 0.0062 1.3E-07 57.5 6.1 67 115-185 124-190 (319)
224 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.013 2.9E-07 52.4 7.9 19 142-160 38-56 (226)
225 PRK14087 dnaA chromosomal repl 96.4 0.013 2.8E-07 58.3 8.2 49 143-193 142-190 (450)
226 PF03354 Terminase_1: Phage Te 96.4 0.0074 1.6E-07 60.6 6.5 150 128-286 1-161 (477)
227 TIGR00362 DnaA chromosomal rep 96.4 0.0091 2E-07 58.7 7.0 38 143-181 137-174 (405)
228 PRK06893 DNA replication initi 96.3 0.0089 1.9E-07 53.8 6.3 48 245-292 90-138 (229)
229 PHA03368 DNA packaging termina 96.3 0.032 6.9E-07 56.8 10.6 133 142-287 254-389 (738)
230 PRK11773 uvrD DNA-dependent he 96.3 0.0081 1.8E-07 63.5 6.9 71 124-198 8-79 (721)
231 KOG1015|consensus 96.3 0.033 7.1E-07 58.2 10.7 149 132-287 686-858 (1567)
232 PRK06835 DNA replication prote 96.3 0.028 6.1E-07 53.3 9.8 45 142-190 183-227 (329)
233 PRK07952 DNA replication prote 96.3 0.021 4.6E-07 51.7 8.5 104 143-287 100-204 (244)
234 PRK13833 conjugal transfer pro 96.3 0.0099 2.1E-07 56.1 6.4 67 116-186 121-187 (323)
235 cd01120 RecA-like_NTPases RecA 96.2 0.074 1.6E-06 44.3 11.2 38 145-185 2-39 (165)
236 TIGR01074 rep ATP-dependent DN 96.2 0.014 2.9E-07 61.3 7.7 68 126-197 2-70 (664)
237 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.027 5.8E-07 51.0 8.6 54 141-198 20-73 (237)
238 TIGR02880 cbbX_cfxQ probable R 96.1 0.044 9.6E-07 51.0 9.9 19 142-160 58-76 (284)
239 CHL00181 cbbX CbbX; Provisiona 96.1 0.042 9.1E-07 51.2 9.7 20 142-161 59-78 (287)
240 PRK11054 helD DNA helicase IV; 96.1 0.036 7.8E-07 57.9 10.0 70 124-197 195-265 (684)
241 PRK05298 excinuclease ABC subu 96.1 0.025 5.5E-07 58.9 8.9 69 124-198 11-82 (652)
242 PRK14712 conjugal transfer nic 96.1 0.029 6.2E-07 63.1 9.6 64 125-189 835-900 (1623)
243 PRK08903 DnaA regulatory inact 96.0 0.028 6.1E-07 50.4 8.1 43 246-290 90-133 (227)
244 KOG1001|consensus 96.0 0.041 9E-07 56.9 9.7 110 142-259 152-267 (674)
245 PLN03025 replication factor C 96.0 0.1 2.2E-06 49.5 11.8 39 245-285 98-136 (319)
246 COG0466 Lon ATP-dependent Lon 95.9 0.048 1E-06 55.7 9.7 96 142-276 350-446 (782)
247 TIGR02782 TrbB_P P-type conjug 95.9 0.022 4.8E-07 53.4 7.0 68 115-186 108-175 (299)
248 TIGR02785 addA_Gpos recombinat 95.9 0.018 3.9E-07 64.3 7.5 124 126-257 2-126 (1232)
249 COG3973 Superfamily I DNA and 95.9 0.033 7.2E-07 55.6 8.3 91 109-199 188-286 (747)
250 COG2805 PilT Tfp pilus assembl 95.9 0.034 7.3E-07 51.1 7.8 48 102-170 105-152 (353)
251 PRK07764 DNA polymerase III su 95.9 0.059 1.3E-06 57.4 10.8 42 245-289 119-160 (824)
252 TIGR01073 pcrA ATP-dependent D 95.9 0.016 3.5E-07 61.4 6.5 70 124-197 3-73 (726)
253 COG1484 DnaC DNA replication p 95.8 0.014 3.1E-07 53.3 5.2 49 142-194 105-153 (254)
254 PRK06731 flhF flagellar biosyn 95.8 0.067 1.4E-06 49.2 9.6 132 141-300 74-209 (270)
255 PRK05707 DNA polymerase III su 95.8 0.044 9.6E-07 52.0 8.6 36 126-161 4-41 (328)
256 TIGR02881 spore_V_K stage V sp 95.8 0.064 1.4E-06 49.3 9.5 20 142-161 42-61 (261)
257 PRK13709 conjugal transfer nic 95.7 0.073 1.6E-06 60.6 11.2 65 124-189 966-1032(1747)
258 KOG0991|consensus 95.7 0.02 4.3E-07 50.6 5.3 43 244-288 111-153 (333)
259 PRK14088 dnaA chromosomal repl 95.7 0.052 1.1E-06 53.8 8.9 38 143-181 131-168 (440)
260 TIGR01547 phage_term_2 phage t 95.7 0.055 1.2E-06 53.0 9.0 135 143-289 2-141 (396)
261 PRK14723 flhF flagellar biosyn 95.6 0.053 1.1E-06 56.7 8.7 131 142-299 185-317 (767)
262 PRK12726 flagellar biosynthesi 95.6 0.05 1.1E-06 52.2 7.8 23 142-164 206-228 (407)
263 PHA03333 putative ATPase subun 95.6 0.23 5E-06 51.0 12.8 72 125-198 169-241 (752)
264 cd01124 KaiC KaiC is a circadi 95.5 0.048 1.1E-06 47.0 7.3 50 145-198 2-51 (187)
265 PRK12422 chromosomal replicati 95.5 0.054 1.2E-06 53.7 8.1 41 143-187 142-182 (445)
266 PRK08116 hypothetical protein; 95.5 0.039 8.5E-07 50.9 6.7 45 142-190 114-158 (268)
267 PRK12377 putative replication 95.5 0.064 1.4E-06 48.7 8.0 46 142-191 101-146 (248)
268 PHA03372 DNA packaging termina 95.4 0.19 4.1E-06 50.7 11.6 128 143-287 203-336 (668)
269 TIGR02760 TraI_TIGR conjugativ 95.4 0.071 1.5E-06 62.1 9.9 64 124-189 1018-1084(1960)
270 PRK00771 signal recognition pa 95.4 0.11 2.4E-06 51.2 9.9 22 142-163 95-116 (437)
271 PF13177 DNA_pol3_delta2: DNA 95.4 0.12 2.7E-06 43.7 9.0 41 245-287 101-141 (162)
272 PRK04328 hypothetical protein; 95.4 0.082 1.8E-06 48.2 8.5 53 142-198 23-75 (249)
273 PF06745 KaiC: KaiC; InterPro 95.4 0.021 4.6E-07 51.2 4.5 136 141-288 18-160 (226)
274 KOG0298|consensus 95.3 0.047 1E-06 58.8 7.4 139 142-287 374-549 (1394)
275 PRK12727 flagellar biosynthesi 95.3 0.19 4.2E-06 50.3 11.2 58 103-161 299-369 (559)
276 PF13173 AAA_14: AAA domain 95.3 0.15 3.3E-06 41.2 8.9 38 246-287 61-98 (128)
277 PF00004 AAA: ATPase family as 95.3 0.11 2.3E-06 41.8 8.1 15 247-261 59-73 (132)
278 KOG2004|consensus 95.2 0.12 2.6E-06 52.8 9.6 113 125-276 415-534 (906)
279 PRK14086 dnaA chromosomal repl 95.2 0.046 1E-06 55.7 6.7 108 143-291 315-423 (617)
280 PTZ00112 origin recognition co 95.1 0.17 3.8E-06 53.4 10.5 40 245-286 868-908 (1164)
281 PRK14721 flhF flagellar biosyn 95.1 0.16 3.5E-06 49.7 9.9 43 142-184 191-233 (420)
282 KOG0739|consensus 95.1 2.1 4.5E-05 39.6 16.1 154 105-309 132-299 (439)
283 COG4962 CpaF Flp pilus assembl 95.0 0.054 1.2E-06 50.8 6.0 82 97-188 134-215 (355)
284 PRK12402 replication factor C 95.0 0.19 4.1E-06 47.8 10.1 39 245-285 124-162 (337)
285 COG1474 CDC6 Cdc6-related prot 95.0 0.41 8.9E-06 46.2 12.2 35 133-168 33-67 (366)
286 cd01126 TraG_VirD4 The TraG/Tr 95.0 0.023 5.1E-07 55.3 3.8 49 144-197 1-49 (384)
287 PRK14956 DNA polymerase III su 94.8 0.074 1.6E-06 52.7 6.9 21 143-163 41-61 (484)
288 PRK13897 type IV secretion sys 94.8 0.042 9.2E-07 56.3 5.3 52 142-198 158-209 (606)
289 PRK06921 hypothetical protein; 94.8 0.077 1.7E-06 48.9 6.6 45 142-189 117-161 (266)
290 COG0470 HolB ATPase involved i 94.8 0.15 3.2E-06 48.2 8.7 41 244-286 107-147 (325)
291 PRK08769 DNA polymerase III su 94.7 0.13 2.9E-06 48.5 8.0 39 123-161 2-45 (319)
292 PF02534 T4SS-DNA_transf: Type 94.7 0.039 8.4E-07 55.3 4.6 50 143-197 45-94 (469)
293 PRK08533 flagellar accessory p 94.6 0.35 7.6E-06 43.5 10.0 53 142-198 24-76 (230)
294 PRK14958 DNA polymerase III su 94.5 0.17 3.7E-06 51.1 8.7 39 245-285 118-156 (509)
295 TIGR02525 plasmid_TraJ plasmid 94.5 0.068 1.5E-06 51.5 5.6 42 142-184 149-190 (372)
296 PRK09183 transposase/IS protei 94.5 0.22 4.7E-06 45.7 8.7 44 142-189 102-145 (259)
297 COG2256 MGS1 ATPase related to 94.5 0.1 2.2E-06 49.8 6.5 48 142-195 48-95 (436)
298 PRK13850 type IV secretion sys 94.4 0.062 1.3E-06 55.8 5.5 52 142-198 139-190 (670)
299 PRK14949 DNA polymerase III su 94.4 0.18 3.8E-06 53.6 8.6 44 245-291 118-161 (944)
300 PRK00411 cdc6 cell division co 94.4 0.26 5.6E-06 48.1 9.6 37 142-179 55-91 (394)
301 PF05729 NACHT: NACHT domain 94.4 0.48 1E-05 39.6 10.1 40 249-288 84-130 (166)
302 PRK14960 DNA polymerase III su 94.4 0.16 3.5E-06 52.1 8.1 39 245-285 117-155 (702)
303 PRK14952 DNA polymerase III su 94.3 0.18 4E-06 51.6 8.5 44 244-290 116-159 (584)
304 PRK13342 recombination factor 94.2 0.54 1.2E-05 46.3 11.5 19 142-160 36-54 (413)
305 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.42 9.1E-06 42.8 9.8 52 142-197 20-71 (229)
306 PF05621 TniB: Bacterial TniB 94.2 0.24 5.1E-06 46.0 8.1 114 142-281 61-181 (302)
307 PRK14873 primosome assembly pr 94.1 0.14 3.1E-06 53.2 7.4 71 329-399 171-245 (665)
308 TIGR01425 SRP54_euk signal rec 94.1 0.43 9.3E-06 46.8 10.2 19 142-160 100-118 (429)
309 PRK12724 flagellar biosynthesi 94.1 0.34 7.3E-06 47.3 9.4 55 245-299 298-356 (432)
310 PHA02544 44 clamp loader, smal 94.1 0.37 8.1E-06 45.5 9.7 39 246-285 100-138 (316)
311 TIGR00596 rad1 DNA repair prot 94.0 0.15 3.3E-06 54.1 7.4 67 221-289 7-73 (814)
312 COG2804 PulE Type II secretory 94.0 0.065 1.4E-06 52.8 4.3 43 127-170 243-285 (500)
313 PRK11823 DNA repair protein Ra 94.0 0.24 5.1E-06 49.3 8.3 88 142-260 80-170 (446)
314 TIGR03499 FlhF flagellar biosy 93.9 0.19 4.2E-06 46.7 7.1 58 104-161 142-213 (282)
315 PRK05973 replicative DNA helic 93.8 0.61 1.3E-05 42.0 10.0 52 142-197 64-115 (237)
316 PRK12323 DNA polymerase III su 93.8 0.18 3.8E-06 51.8 7.1 21 143-163 39-59 (700)
317 PRK07940 DNA polymerase III su 93.7 0.41 9E-06 46.6 9.3 20 142-161 36-55 (394)
318 PF05496 RuvB_N: Holliday junc 93.7 0.087 1.9E-06 46.7 4.1 18 143-160 51-68 (233)
319 PRK07471 DNA polymerase III su 93.7 0.24 5.1E-06 47.9 7.5 42 244-287 139-180 (365)
320 PRK11034 clpA ATP-dependent Cl 93.7 0.42 9.1E-06 50.6 9.9 29 132-160 197-225 (758)
321 PRK13851 type IV secretion sys 93.6 0.09 1.9E-06 50.2 4.5 50 132-186 153-202 (344)
322 KOG0738|consensus 93.6 1.3 2.9E-05 42.4 11.9 65 246-310 304-383 (491)
323 PRK00440 rfc replication facto 93.6 0.65 1.4E-05 43.7 10.4 38 246-285 102-139 (319)
324 PRK05986 cob(I)alamin adenolsy 93.6 0.28 6.1E-06 42.5 7.0 144 142-298 22-168 (191)
325 TIGR00763 lon ATP-dependent pr 93.6 0.36 7.7E-06 51.6 9.3 18 142-159 347-364 (775)
326 PRK14964 DNA polymerase III su 93.5 0.47 1E-05 47.5 9.5 46 103-163 10-56 (491)
327 PF05707 Zot: Zonular occluden 93.5 0.13 2.7E-06 45.0 5.0 52 246-298 79-135 (193)
328 PRK13876 conjugal transfer cou 93.5 0.11 2.4E-06 53.9 5.2 51 142-197 144-194 (663)
329 PRK14962 DNA polymerase III su 93.5 0.35 7.5E-06 48.4 8.5 19 143-161 37-55 (472)
330 TIGR00064 ftsY signal recognit 93.5 0.56 1.2E-05 43.3 9.4 36 142-180 72-107 (272)
331 PRK14963 DNA polymerase III su 93.5 0.27 5.8E-06 49.6 7.8 19 143-161 37-55 (504)
332 PF03969 AFG1_ATPase: AFG1-lik 93.5 0.89 1.9E-05 43.8 11.0 110 141-291 61-171 (362)
333 PHA00012 I assembly protein 93.5 0.66 1.4E-05 43.5 9.6 26 145-170 4-29 (361)
334 PRK07003 DNA polymerase III su 93.5 0.12 2.6E-06 53.9 5.3 44 103-161 13-57 (830)
335 TIGR00678 holB DNA polymerase 93.4 0.34 7.4E-06 41.9 7.6 20 142-161 14-33 (188)
336 COG0593 DnaA ATPase involved i 93.4 0.25 5.4E-06 48.0 7.2 48 246-293 175-223 (408)
337 PRK10867 signal recognition pa 93.4 0.7 1.5E-05 45.6 10.3 43 142-186 100-144 (433)
338 TIGR00959 ffh signal recogniti 93.4 0.61 1.3E-05 45.9 9.9 23 142-164 99-121 (428)
339 TIGR00595 priA primosomal prot 93.3 0.33 7.1E-06 49.1 8.2 56 344-399 25-81 (505)
340 PRK09112 DNA polymerase III su 93.3 0.25 5.5E-06 47.4 7.0 39 245-285 140-178 (351)
341 KOG1016|consensus 93.3 0.35 7.6E-06 49.8 8.0 181 106-291 243-476 (1387)
342 PRK05580 primosome assembly pr 93.2 0.3 6.5E-06 51.3 8.0 56 344-399 190-246 (679)
343 PRK08939 primosomal protein Dn 93.2 0.31 6.7E-06 45.8 7.4 19 142-160 156-174 (306)
344 PF01695 IstB_IS21: IstB-like 93.2 0.078 1.7E-06 45.7 3.1 44 142-189 47-90 (178)
345 TIGR02767 TraG-Ti Ti-type conj 93.2 0.13 2.9E-06 52.9 5.3 51 142-197 211-261 (623)
346 KOG1133|consensus 93.2 0.077 1.7E-06 53.8 3.4 44 124-167 14-59 (821)
347 PRK09111 DNA polymerase III su 93.2 0.4 8.7E-06 49.4 8.6 40 244-285 130-169 (598)
348 COG1110 Reverse gyrase [DNA re 93.2 0.24 5.3E-06 52.6 7.0 68 332-399 113-186 (1187)
349 PRK13341 recombination factor 93.2 0.38 8.2E-06 50.6 8.6 43 246-294 109-151 (725)
350 TIGR02639 ClpA ATP-dependent C 93.2 0.67 1.5E-05 49.2 10.6 22 139-160 200-221 (731)
351 COG1198 PriA Primosomal protei 93.1 0.13 2.8E-06 53.6 5.0 71 329-399 228-301 (730)
352 TIGR02524 dot_icm_DotB Dot/Icm 93.1 0.14 3.1E-06 49.2 5.0 27 142-169 134-160 (358)
353 cd03115 SRP The signal recogni 93.1 0.57 1.2E-05 39.9 8.4 55 245-299 81-135 (173)
354 PRK08691 DNA polymerase III su 93.1 0.3 6.6E-06 50.6 7.6 39 245-285 118-156 (709)
355 cd01129 PulE-GspE PulE/GspE Th 93.1 0.18 3.8E-06 46.4 5.4 55 127-184 65-119 (264)
356 KOG0733|consensus 93.0 0.77 1.7E-05 46.4 9.9 176 102-341 507-694 (802)
357 PRK13822 conjugal transfer cou 93.0 0.14 3E-06 53.0 5.1 51 142-197 224-274 (641)
358 PRK08699 DNA polymerase III su 93.0 0.54 1.2E-05 44.6 8.7 37 127-163 3-42 (325)
359 PRK04195 replication factor C 92.9 0.34 7.3E-06 48.8 7.5 46 103-160 11-57 (482)
360 PRK06995 flhF flagellar biosyn 92.9 0.52 1.1E-05 47.0 8.6 20 142-161 256-275 (484)
361 PRK08451 DNA polymerase III su 92.8 0.31 6.7E-06 49.3 7.0 40 244-285 115-154 (535)
362 PRK14957 DNA polymerase III su 92.8 0.5 1.1E-05 48.0 8.5 39 245-285 118-156 (546)
363 PHA00729 NTP-binding motif con 92.6 0.87 1.9E-05 40.6 8.9 74 224-298 61-138 (226)
364 PRK14951 DNA polymerase III su 92.6 0.31 6.7E-06 50.2 6.8 21 143-163 39-59 (618)
365 PRK13880 conjugal transfer cou 92.6 0.16 3.4E-06 52.8 4.8 49 142-195 175-223 (636)
366 PRK13900 type IV secretion sys 92.6 0.16 3.5E-06 48.3 4.5 50 132-186 151-200 (332)
367 PRK14961 DNA polymerase III su 92.6 0.59 1.3E-05 45.2 8.5 19 143-161 39-57 (363)
368 COG4626 Phage terminase-like p 92.5 0.97 2.1E-05 45.2 9.9 148 125-286 61-223 (546)
369 PRK05563 DNA polymerase III su 92.4 0.49 1.1E-05 48.5 8.0 46 103-163 13-59 (559)
370 PRK06871 DNA polymerase III su 92.4 0.82 1.8E-05 43.3 8.9 37 127-163 4-45 (325)
371 TIGR03819 heli_sec_ATPase heli 92.3 0.28 6.1E-06 46.8 5.8 64 115-185 154-217 (340)
372 PRK11331 5-methylcytosine-spec 92.3 0.28 6.1E-06 48.2 5.8 33 126-160 180-212 (459)
373 PRK06645 DNA polymerase III su 92.3 1 2.2E-05 45.4 9.9 22 142-163 43-64 (507)
374 PRK06964 DNA polymerase III su 92.2 0.76 1.6E-05 43.9 8.5 37 127-163 3-42 (342)
375 TIGR02655 circ_KaiC circadian 92.2 0.55 1.2E-05 47.3 8.0 62 133-198 251-315 (484)
376 PRK10865 protein disaggregatio 92.2 1 2.2E-05 48.6 10.4 22 139-160 196-217 (857)
377 PF00437 T2SE: Type II/IV secr 92.1 0.15 3.2E-06 47.1 3.6 54 129-186 115-168 (270)
378 PTZ00293 thymidine kinase; Pro 92.1 0.44 9.5E-06 42.0 6.3 39 142-183 4-42 (211)
379 TIGR01420 pilT_fam pilus retra 92.1 0.33 7.2E-06 46.5 6.1 42 142-185 122-163 (343)
380 PRK14948 DNA polymerase III su 92.1 0.71 1.5E-05 47.8 8.8 22 142-163 38-59 (620)
381 PF01637 Arch_ATPase: Archaeal 92.1 0.2 4.4E-06 44.5 4.4 26 141-167 19-44 (234)
382 cd00561 CobA_CobO_BtuR ATP:cor 92.1 0.63 1.4E-05 39.1 7.0 142 144-297 4-147 (159)
383 PRK10436 hypothetical protein; 92.0 0.16 3.5E-06 50.4 4.0 42 127-169 203-244 (462)
384 PRK07994 DNA polymerase III su 92.0 0.48 1.1E-05 49.0 7.4 38 245-284 118-155 (647)
385 PRK10917 ATP-dependent DNA hel 92.0 0.4 8.6E-06 50.5 7.0 57 343-399 309-369 (681)
386 TIGR02533 type_II_gspE general 91.9 0.27 5.8E-06 49.4 5.4 47 118-168 221-267 (486)
387 cd01130 VirB11-like_ATPase Typ 91.9 0.12 2.6E-06 44.8 2.6 33 126-159 10-42 (186)
388 cd01121 Sms Sms (bacterial rad 91.8 0.87 1.9E-05 44.1 8.6 90 142-259 82-171 (372)
389 PRK05896 DNA polymerase III su 91.8 0.7 1.5E-05 47.3 8.2 22 142-163 38-59 (605)
390 TIGR02237 recomb_radB DNA repa 91.7 0.8 1.7E-05 40.3 7.7 38 142-182 12-49 (209)
391 PRK14965 DNA polymerase III su 91.6 0.96 2.1E-05 46.5 9.1 43 244-289 117-159 (576)
392 KOG0383|consensus 91.5 0.023 4.9E-07 58.4 -2.7 61 331-392 616-678 (696)
393 PRK07993 DNA polymerase III su 91.5 0.85 1.9E-05 43.5 8.0 36 126-161 3-43 (334)
394 COG2909 MalT ATP-dependent tra 91.5 0.19 4E-06 52.5 3.7 43 246-289 129-171 (894)
395 KOG2170|consensus 91.5 0.4 8.7E-06 44.2 5.4 51 248-300 180-237 (344)
396 TIGR02688 conserved hypothetic 91.4 0.47 1E-05 46.2 6.2 19 142-160 209-227 (449)
397 TIGR03346 chaperone_ClpB ATP-d 91.4 1.7 3.8E-05 47.0 11.2 20 141-160 193-212 (852)
398 TIGR00708 cobA cob(I)alamin ad 91.4 0.79 1.7E-05 39.1 6.9 56 243-298 94-150 (173)
399 TIGR02538 type_IV_pilB type IV 91.3 0.21 4.6E-06 51.2 4.0 47 118-168 295-341 (564)
400 PRK14955 DNA polymerase III su 91.2 0.93 2E-05 44.4 8.3 20 143-162 39-58 (397)
401 TIGR01650 PD_CobS cobaltochela 91.2 1.1 2.3E-05 42.4 8.2 18 142-159 64-81 (327)
402 PRK08074 bifunctional ATP-depe 91.2 1.1 2.3E-05 49.0 9.5 56 343-398 751-808 (928)
403 PRK10416 signal recognition pa 91.2 2.4 5.2E-05 40.1 10.7 19 142-160 114-132 (318)
404 TIGR01243 CDC48 AAA family ATP 91.1 0.7 1.5E-05 49.1 7.9 52 103-159 450-504 (733)
405 PRK14959 DNA polymerase III su 91.1 0.72 1.6E-05 47.4 7.4 21 143-163 39-59 (624)
406 COG0630 VirB11 Type IV secreto 91.1 0.56 1.2E-05 44.3 6.3 74 102-185 109-182 (312)
407 PRK14969 DNA polymerase III su 91.0 0.81 1.8E-05 46.5 7.8 39 245-285 118-156 (527)
408 PF01443 Viral_helicase1: Vira 91.0 0.17 3.8E-06 45.3 2.8 14 145-158 1-14 (234)
409 PRK06090 DNA polymerase III su 91.0 1.4 3E-05 41.7 8.8 37 125-161 3-44 (319)
410 KOG2028|consensus 91.0 0.73 1.6E-05 43.7 6.7 50 143-195 163-212 (554)
411 TIGR00767 rho transcription te 90.9 0.72 1.6E-05 44.7 6.8 28 141-169 167-194 (415)
412 PF03237 Terminase_6: Terminas 90.8 2.1 4.6E-05 40.9 10.4 42 146-188 1-42 (384)
413 CHL00095 clpC Clp protease ATP 90.8 1.3 2.8E-05 47.7 9.5 20 141-160 199-218 (821)
414 PHA00350 putative assembly pro 90.7 1.5 3.3E-05 42.6 8.9 25 145-169 4-29 (399)
415 TIGR03689 pup_AAA proteasome A 90.6 0.92 2E-05 45.7 7.7 18 142-159 216-233 (512)
416 PRK06067 flagellar accessory p 90.6 1.1 2.3E-05 40.4 7.5 52 142-197 25-76 (234)
417 COG1435 Tdk Thymidine kinase [ 90.5 0.42 9.2E-06 41.3 4.5 92 142-259 4-95 (201)
418 TIGR03880 KaiC_arch_3 KaiC dom 90.5 1.3 2.8E-05 39.5 8.0 53 142-198 16-68 (224)
419 PRK09354 recA recombinase A; P 90.4 0.67 1.5E-05 44.2 6.2 91 142-259 60-151 (349)
420 KOG0732|consensus 90.3 0.52 1.1E-05 50.7 5.8 53 102-159 261-316 (1080)
421 TIGR00643 recG ATP-dependent D 90.3 0.66 1.4E-05 48.4 6.6 56 344-399 284-343 (630)
422 COG2109 BtuR ATP:corrinoid ade 90.2 2.6 5.7E-05 36.2 8.9 142 144-299 30-176 (198)
423 cd01394 radB RadB. The archaea 90.2 1.3 2.9E-05 39.2 7.7 36 142-180 19-54 (218)
424 KOG1513|consensus 90.2 0.56 1.2E-05 48.6 5.6 156 125-287 264-453 (1300)
425 COG1219 ClpX ATP-dependent pro 90.2 0.13 2.9E-06 47.6 1.2 19 142-160 97-115 (408)
426 PRK14950 DNA polymerase III su 90.1 1.4 3E-05 45.5 8.8 21 142-162 38-58 (585)
427 TIGR02012 tigrfam_recA protein 90.1 0.61 1.3E-05 44.0 5.6 91 142-259 55-146 (321)
428 COG1074 RecB ATP-dependent exo 90.0 0.48 1E-05 52.8 5.6 55 142-196 16-72 (1139)
429 cd01393 recA_like RecA is a b 90.0 1.3 2.8E-05 39.4 7.5 41 142-182 19-62 (226)
430 PRK13764 ATPase; Provisional 90.0 0.5 1.1E-05 48.4 5.2 26 142-168 257-282 (602)
431 KOG1806|consensus 89.9 0.61 1.3E-05 49.6 5.7 72 122-196 735-806 (1320)
432 PF04665 Pox_A32: Poxvirus A32 89.8 0.45 9.7E-06 42.9 4.3 38 142-182 13-50 (241)
433 COG1221 PspF Transcriptional r 89.8 1.4 3.1E-05 42.7 7.9 19 142-160 101-119 (403)
434 TIGR01243 CDC48 AAA family ATP 89.7 2.4 5.1E-05 45.2 10.4 19 141-159 211-229 (733)
435 PRK10787 DNA-binding ATP-depen 89.7 1.3 2.9E-05 47.1 8.4 18 142-159 349-366 (784)
436 TIGR02784 addA_alphas double-s 89.6 0.69 1.5E-05 51.8 6.4 57 141-197 9-65 (1141)
437 cd00983 recA RecA is a bacter 89.5 0.7 1.5E-05 43.7 5.5 89 142-259 55-146 (325)
438 PRK09087 hypothetical protein; 89.5 1.1 2.4E-05 40.1 6.6 41 248-291 89-129 (226)
439 TIGR03345 VI_ClpV1 type VI sec 89.4 2.7 5.9E-05 45.4 10.5 31 130-160 192-226 (852)
440 PRK12899 secA preprotein trans 89.4 3.6 7.7E-05 44.2 11.0 114 279-395 504-619 (970)
441 PF06733 DEAD_2: DEAD_2; Inte 89.4 0.27 5.8E-06 42.1 2.5 44 217-260 115-159 (174)
442 TIGR03878 thermo_KaiC_2 KaiC d 89.3 0.82 1.8E-05 41.9 5.7 52 142-196 36-90 (259)
443 TIGR02397 dnaX_nterm DNA polym 89.1 1.4 2.9E-05 42.3 7.4 19 142-160 36-54 (355)
444 PF01078 Mg_chelatase: Magnesi 88.8 0.24 5.1E-06 43.4 1.7 28 131-159 12-39 (206)
445 TIGR02788 VirB11 P-type DNA tr 88.7 0.53 1.2E-05 44.4 4.1 23 135-158 138-160 (308)
446 PRK14701 reverse gyrase; Provi 88.5 2.1 4.5E-05 49.3 9.2 57 343-399 121-183 (1638)
447 COG4185 Uncharacterized protei 88.5 0.32 7E-06 40.5 2.2 40 143-189 3-42 (187)
448 COG3267 ExeA Type II secretory 88.5 1.8 3.9E-05 39.1 7.0 51 142-196 51-103 (269)
449 PRK07246 bifunctional ATP-depe 88.5 3.2 6.9E-05 44.7 10.2 54 343-399 646-699 (820)
450 PF12846 AAA_10: AAA-like doma 88.4 0.51 1.1E-05 43.8 3.8 42 143-187 2-43 (304)
451 COG0606 Predicted ATPase with 88.4 0.28 6.1E-06 48.1 2.1 28 131-159 188-215 (490)
452 PRK14954 DNA polymerase III su 88.3 1.8 3.9E-05 44.8 7.9 20 143-162 39-58 (620)
453 COG2255 RuvB Holliday junction 88.2 0.97 2.1E-05 41.5 5.2 20 142-161 52-71 (332)
454 PF10412 TrwB_AAD_bind: Type I 88.0 0.44 9.5E-06 46.5 3.2 47 142-191 15-61 (386)
455 COG5008 PilU Tfp pilus assembl 87.9 0.93 2E-05 41.1 4.8 24 142-166 127-150 (375)
456 PF12775 AAA_7: P-loop contain 87.9 0.26 5.7E-06 45.5 1.5 26 133-159 25-50 (272)
457 PRK09376 rho transcription ter 87.9 1.6 3.5E-05 42.3 6.7 27 141-168 168-194 (416)
458 PRK07399 DNA polymerase III su 87.8 1.9 4.2E-05 40.7 7.3 39 245-286 123-161 (314)
459 KOG0740|consensus 87.8 2.1 4.6E-05 41.8 7.6 58 245-302 244-313 (428)
460 PRK07133 DNA polymerase III su 87.8 2.1 4.5E-05 44.9 8.0 20 143-162 41-60 (725)
461 PRK06305 DNA polymerase III su 87.7 2.5 5.5E-05 42.1 8.4 22 142-163 39-60 (451)
462 cd01125 repA Hexameric Replica 87.6 3.6 7.9E-05 37.0 8.8 54 144-198 3-65 (239)
463 TIGR03743 SXT_TraD conjugative 87.6 0.8 1.7E-05 47.6 4.9 54 142-198 176-231 (634)
464 TIGR00416 sms DNA repair prote 87.4 2.1 4.5E-05 42.7 7.6 52 142-197 94-145 (454)
465 TIGR02655 circ_KaiC circadian 87.4 0.75 1.6E-05 46.3 4.5 56 141-199 20-75 (484)
466 cd01128 rho_factor Transcripti 87.3 2 4.4E-05 39.0 6.9 18 141-158 15-32 (249)
467 PF03266 NTPase_1: NTPase; In 87.2 2 4.3E-05 36.5 6.4 36 245-282 94-129 (168)
468 PF01580 FtsK_SpoIIIE: FtsK/Sp 87.1 0.72 1.6E-05 40.5 3.8 27 142-168 38-64 (205)
469 PRK14953 DNA polymerase III su 87.0 2.8 6E-05 42.2 8.3 20 143-162 39-58 (486)
470 cd01127 TrwB Bacterial conjuga 86.9 0.45 9.8E-06 46.8 2.6 45 142-189 42-86 (410)
471 PRK06647 DNA polymerase III su 86.9 2.4 5.2E-05 43.5 7.8 19 143-161 39-57 (563)
472 cd01524 RHOD_Pyr_redox Member 86.8 1.2 2.5E-05 33.3 4.3 37 344-380 51-87 (90)
473 TIGR02640 gas_vesic_GvpN gas v 86.7 0.4 8.7E-06 44.1 2.0 19 142-160 21-39 (262)
474 PF02572 CobA_CobO_BtuR: ATP:c 86.6 5.6 0.00012 33.9 8.7 141 145-297 6-148 (172)
475 COG0210 UvrD Superfamily I DNA 86.6 1.7 3.6E-05 45.7 6.8 70 125-198 2-72 (655)
476 TIGR02238 recomb_DMC1 meiotic 86.5 2.6 5.6E-05 39.8 7.3 55 142-196 96-154 (313)
477 KOG2228|consensus 86.5 13 0.00027 35.3 11.4 19 140-158 47-65 (408)
478 PRK11747 dinG ATP-dependent DN 86.5 6.7 0.00015 41.5 11.1 59 334-398 526-589 (697)
479 KOG0344|consensus 86.3 7.9 0.00017 39.0 10.6 96 149-256 364-466 (593)
480 smart00450 RHOD Rhodanese Homo 86.0 1.9 4.1E-05 32.2 5.2 41 340-380 52-93 (100)
481 TIGR00580 mfd transcription-re 86.0 1.8 3.9E-05 47.0 6.6 56 344-399 500-559 (926)
482 COG1199 DinG Rad3-related DNA 86.0 3.6 7.9E-05 43.1 8.9 60 332-395 468-528 (654)
483 cd01131 PilT Pilus retraction 85.8 0.78 1.7E-05 40.2 3.3 39 144-184 3-41 (198)
484 COG2874 FlaH Predicted ATPases 85.4 6.1 0.00013 34.9 8.3 139 142-298 28-180 (235)
485 PRK04841 transcriptional regul 85.4 3.2 7E-05 45.2 8.5 43 246-289 121-163 (903)
486 KOG2036|consensus 85.3 3.6 7.8E-05 42.3 7.8 63 127-191 255-322 (1011)
487 PRK14970 DNA polymerase III su 85.3 2.4 5.2E-05 41.0 6.7 19 142-160 39-57 (367)
488 TIGR00614 recQ_fam ATP-depende 85.2 2.5 5.4E-05 42.4 7.0 56 344-399 51-106 (470)
489 COG0552 FtsY Signal recognitio 85.2 16 0.00034 34.5 11.5 132 142-299 139-280 (340)
490 PF13481 AAA_25: AAA domain; P 85.2 2 4.4E-05 37.0 5.6 57 142-199 32-95 (193)
491 PF01935 DUF87: Domain of unkn 85.1 0.87 1.9E-05 40.7 3.3 41 142-184 23-63 (229)
492 PHA02542 41 41 helicase; Provi 85.1 2.5 5.4E-05 42.3 6.8 43 142-187 190-235 (473)
493 KOG0741|consensus 85.0 6.7 0.00014 39.3 9.3 71 107-182 493-573 (744)
494 TIGR03754 conj_TOL_TraD conjug 84.9 1.6 3.4E-05 45.2 5.3 54 142-198 180-235 (643)
495 KOG0331|consensus 84.8 4.4 9.4E-05 40.7 8.2 70 171-252 339-415 (519)
496 PF13555 AAA_29: P-loop contai 84.4 0.49 1.1E-05 32.8 1.1 18 142-159 23-40 (62)
497 TIGR03345 VI_ClpV1 type VI sec 83.9 1.4 3E-05 47.6 4.6 17 144-160 598-614 (852)
498 KOG1131|consensus 83.7 4.2 9E-05 40.5 7.3 73 123-196 14-90 (755)
499 TIGR02639 ClpA ATP-dependent C 83.7 1.5 3.3E-05 46.5 4.9 17 144-160 486-502 (731)
500 TIGR02868 CydC thiol reductant 83.7 4.8 0.0001 41.0 8.4 18 141-158 360-377 (529)
No 1
>KOG0332|consensus
Probab=100.00 E-value=3.2e-65 Score=459.20 Aligned_cols=329 Identities=61% Similarity=0.942 Sum_probs=310.2
Q ss_pred CCCCCChHhHHHHHHHHHhhhccccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC
Q psy11867 61 EDKPLSVAEKSLLQKIVRRGLIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD 140 (399)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~ 140 (399)
.++....++.+++++.++.. +.-.+|++|++|+++|++|+|.|+++++++.|+|.+|+.||+.|+|.++..
T Consensus 57 ~~~~~e~~~~~ll~~~~~~~---------vk~~dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~ 127 (477)
T KOG0332|consen 57 HEKKEEPADSSLLNKFIESN---------VKLADPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAE 127 (477)
T ss_pred hhccCCcchhhhhcchhhhc---------eeecCCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcC
Confidence 33444555667777766543 333469999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
|++|+|++++.|+|||.||.+.+|.++......|++++|+||||||.|+.+++.++|++. ++...++..+....+....
T Consensus 128 Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~~i 206 (477)
T KOG0332|consen 128 PPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGNKL 206 (477)
T ss_pred CchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCCcc
Confidence 999999999999999999999999999998899999999999999999999999999998 8999999999877777777
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
..+|+|+|||.+.+|+.+.+.+++..++.+|+||||.|++.+||.+...+|...+|+++|+++||||+...++.|+..+.
T Consensus 207 ~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kiv 286 (477)
T KOG0332|consen 207 TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIV 286 (477)
T ss_pred hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhc
Confidence 78999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
+++..+.+.+++..+.+|+|+|+.|...++|++.|.+++.....++.||||.++++|.||+..|+..|+.|.++||+|+.
T Consensus 287 pn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~ 366 (477)
T KOG0332|consen 287 PNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTV 366 (477)
T ss_pred CCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccC
Q psy11867 381 EQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 381 ~~R~~v~~~F~~G~~~ILV 399 (399)
.+|.+++++||.|+.+|||
T Consensus 367 ~~R~~ii~~Fr~g~~kVLi 385 (477)
T KOG0332|consen 367 EQRAAIIDRFREGKEKVLI 385 (477)
T ss_pred HHHHHHHHHHhcCcceEEE
Confidence 9999999999999999986
No 2
>KOG0330|consensus
Probab=100.00 E-value=5e-58 Score=414.97 Aligned_cols=295 Identities=31% Similarity=0.483 Sum_probs=280.3
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEE
Q psy11867 100 YSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCL 179 (399)
Q Consensus 100 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 179 (399)
.+..+|.++++.+.+.+++...|+..||+||+++||.++. |+|||+.|+||||||.+|++|+++++......++++||
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~--g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALG--GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhC--CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 3467899999999999999999999999999999999998 79999999999999999999999999888888999999
Q ss_pred eCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechh
Q psy11867 180 APTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 180 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah 256 (399)
+||||||.|+.+.++.++..+ ++.+...+||.++..+. ...+||+|+|||+|++++.+.+.|.++.++++|+||||
T Consensus 136 tPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred cCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 999999999999999999987 89999999998775543 67899999999999999998999999999999999999
Q ss_pred hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHH
Q psy11867 257 VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVS 336 (399)
Q Consensus 257 ~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (399)
+++++ .|...+..|++.+|..+|+++||||++..+.++.+..+.+|..+.......+.+.++|.|.+++. ..|...|.
T Consensus 215 rlLd~-dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 215 RLLDM-DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred hhhhh-hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99986 89999999999999999999999999999999999999999999999999999999999999976 56888999
Q ss_pred HHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 337 NIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 337 ~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+++......+||||++..++.+++-.|+..|+.+..+||.|++..|.-+++.|++|...|||
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv 355 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILV 355 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEE
Confidence 999988889999999999999999999999999999999999999999999999999999986
No 3
>KOG0328|consensus
Probab=100.00 E-value=4e-56 Score=386.94 Aligned_cols=297 Identities=36% Similarity=0.662 Sum_probs=279.2
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEE
Q psy11867 98 PLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVL 177 (399)
Q Consensus 98 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~l 177 (399)
.+..+.+|++++|.+.+++++++.||..|+.||..|+|.+++ |+||+++|++|+|||.+|-+.+++.+.-..+..++|
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Ilk--GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILK--GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhc--ccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 344578999999999999999999999999999999999999 799999999999999999999999988877778999
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEec
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDE 254 (399)
||+||||||.|+.+.+..++.++ ++.+..+.||.++.... ..+.|++.+|||++++++ +.+.+.-+.++++|+||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmi-kr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMI-KRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHH-HhccccccceeEEEecc
Confidence 99999999999999999999987 78888999998865443 457799999999999996 44678889999999999
Q ss_pred hhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHH
Q psy11867 255 ADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEA 334 (399)
Q Consensus 255 ah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (399)
||.|++. +|.+++..+.+.+|+.+|++++|||+|.++.++...++.||+.+-+.+.+.++++++|+|+.++.++-|++.
T Consensus 178 aDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 178 ADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred HHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhH
Confidence 9999986 999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 335 VSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 335 l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
|..++......+++||||+++.+.||.+.|+...+.|..+||+|++++|+.++++||+|+.+||+
T Consensus 257 LcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLi 321 (400)
T KOG0328|consen 257 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLI 321 (400)
T ss_pred HHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 4
>KOG0331|consensus
Probab=100.00 E-value=2.2e-55 Score=421.93 Aligned_cols=290 Identities=30% Similarity=0.506 Sum_probs=264.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC------CCCCCeEE
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP------SIQEPQVL 177 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~------~~~~~~~l 177 (399)
.|.+++|++.+.+.++..||..|||||.++||.++. |+|+++.|.||||||++|++|++.++.. ...+|++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~--GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALS--GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceecc--CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 799999999999999999999999999999999999 7999999999999999999999999875 34689999
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEec
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDE 254 (399)
||+||||||.|+.+.+.+++..+ .++..+.+||.....+. ..+.+|+|+|||||.+++ +.+..+++++.|+|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~l-e~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLL-EEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHH-HcCCccccceeEEEecc
Confidence 99999999999999999999887 58889999998775554 567889999999999996 55788999999999999
Q ss_pred hhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccc--ccccceeEEEEEeCChhhH
Q psy11867 255 ADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREE--ESLDNIKQHYVMCKNIDEK 331 (399)
Q Consensus 255 ah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~--~~~~~i~~~~~~~~~~~~k 331 (399)
||+|+++ ||..++..|+..+ ++..|++++|||||.++..++..++.+|..+.+.... .+..++.|....|+ ...|
T Consensus 248 ADrMldm-GFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K 325 (519)
T KOG0331|consen 248 ADRMLDM-GFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAK 325 (519)
T ss_pred HHhhhcc-ccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHH
Confidence 9999987 8999999999999 5566899999999999999999999999999988553 56788999999998 4667
Q ss_pred HHHHHHHhccC---CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 332 FEAVSNIYGVV---TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 332 ~~~l~~ll~~~---~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...|..++... ..+|+||||++++.|+.|+..|+..++++..+||+.+|.||+.+++.|++|+..|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLV 396 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLV 396 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEE
Confidence 77777777665 457999999999999999999999999999999999999999999999999999997
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-54 Score=432.31 Aligned_cols=293 Identities=36% Similarity=0.578 Sum_probs=270.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC--CCCCCeEEEEe
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP--SIQEPQVLCLA 180 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~--~~~~~~~lil~ 180 (399)
..|++++|++.+++++.++||..|||||.++||.++. |+|++++|+||||||+||++|+++.+.. ......+||++
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~--g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILA--GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 5799999999999999999999999999999999999 7999999999999999999999999874 22222299999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||||||.|+++.++.++.+..++.+..++||.+...+. ..+++|||+|||||++++.+ +.++++++.++|+||||+
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhh
Confidence 99999999999999999887568889999998765544 33589999999999999755 488999999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccc--cccceeEEEEEeCChhhHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE--SLDNIKQHYVMCKNIDEKFEAV 335 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l 335 (399)
|+++ ||.+.+..|+..++.+.|+++||||++..+..+++.++.+|..+.+..... +...+.|+|+.+...+.|...|
T Consensus 186 mLd~-Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 186 MLDM-GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhcC-CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 9987 999999999999999999999999999999999999999999988885555 8899999999998866799999
Q ss_pred HHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 336 SNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 336 ~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++......++||||++++.|+.|+..|...|+++..+||+|++++|..+++.|++|+++|||
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 9999999989999999999999999999999999999999999999999999999999999997
No 6
>KOG0338|consensus
Probab=100.00 E-value=1e-54 Score=404.86 Aligned_cols=294 Identities=31% Similarity=0.491 Sum_probs=271.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC---CCCeEEE
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI---QEPQVLC 178 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~li 178 (399)
..+|.+++|+..+++++..+||..|||||..+||..+. |+|++.||.||||||.||++|+|+++.-.+ ...|+||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvall--gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALL--GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhh--cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEE
Confidence 45899999999999999999999999999999999998 799999999999999999999999986443 2358999
Q ss_pred EeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEech
Q psy11867 179 LAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEA 255 (399)
Q Consensus 179 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEa 255 (399)
|+|||||+.|++.+.+++..++ .+.+.+++||-++..+. +..++|||+|||||.+|+.+...|++.++.++|+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999987 69999999998875543 7889999999999999999999999999999999999
Q ss_pred hhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh--hhHHH
Q psy11867 256 DVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI--DEKFE 333 (399)
Q Consensus 256 h~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~--~~k~~ 333 (399)
|+|++. +|.+.+..|++.+|+++|+++||||++..+.+++...+..|+.+.++........+.|.|+..... ..+..
T Consensus 337 DRMLee-gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 337 DRMLEE-GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHH-HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 999986 999999999999999999999999999999999999999999999999988899999998866532 34667
Q ss_pred HHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 334 AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 334 ~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+..++......++|||+.+++.|+.+.-.|.-.|.+++-+||.++|.||.+.++.|+++++.|||
T Consensus 416 ~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLi 481 (691)
T KOG0338|consen 416 MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481 (691)
T ss_pred HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEE
Confidence 777888877788999999999999999999988899999999999999999999999999999986
No 7
>KOG0326|consensus
Probab=100.00 E-value=8.5e-53 Score=371.91 Aligned_cols=291 Identities=31% Similarity=0.563 Sum_probs=273.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
-..|+++.|...++.+++++||..|+|+|+++||..+. |+|+++.|..|+|||.||.+|+++.+.......+++|++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLt--GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALT--GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeec--chhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 35799999999999999999999999999999999998 7999999999999999999999999999888999999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|||||.|+....+.+++++ ++.+....||.++.... ....|++|+||||++++. +.+..+++++.++|+||||.|
T Consensus 162 trelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~-~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLA-KKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred cchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHH-hcccccchhceEEEechhhhh
Confidence 9999999999999999998 69999999999886654 456799999999999995 446778999999999999999
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
++. .|...+..++..+|+++|++++|||+|..|..|..+++.+|..|.+-. +.++.++.|+|.++.. .+|...|..+
T Consensus 240 Ls~-~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e-~qKvhCLntL 316 (459)
T KOG0326|consen 240 LSV-DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEE-RQKVHCLNTL 316 (459)
T ss_pred hch-hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeech-hhhhhhHHHH
Confidence 974 899999999999999999999999999999999999999999998874 4678899999999976 6899999999
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+......+.||||||...++.||..+.+.|+.|..+|+.|-++.|..+++.||+|.++.||
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLV 377 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLV 377 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceee
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 8
>KOG0343|consensus
Probab=100.00 E-value=7e-51 Score=382.42 Aligned_cols=292 Identities=27% Similarity=0.443 Sum_probs=268.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC----CCCCeEE
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----IQEPQVL 177 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----~~~~~~l 177 (399)
+..|++++|+...+++|+..+|..+|.+|+.+||..|. |+||+..|.||||||+||++|+++.+... ..|--||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~--G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ--GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhcc--CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 56799999999999999999999999999999999999 79999999999999999999999988442 2455699
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh--hccCCcEEEeCchhHHHhhhccccccCCceeEEEEech
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN--KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEA 255 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEa 255 (399)
||+||||||.|+++++.+.+++. .+...++.||....-. .....+|+|||||||++|+.....++..+++++|+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 99999999999999999999986 7899999999876443 35678999999999999999999999999999999999
Q ss_pred hhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc--ccccccceeEEEEEeCChhhHHH
Q psy11867 256 DVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR--EEESLDNIKQHYVMCKNIDEKFE 333 (399)
Q Consensus 256 h~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~--~~~~~~~i~~~~~~~~~~~~k~~ 333 (399)
|+|+++ ||...+..|+..+|+.+|+++||||-+..+.++++..+.||..|.+.. ...+++++.|+|+.++. .+|+.
T Consensus 225 DR~LDM-GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~ 302 (758)
T KOG0343|consen 225 DRMLDM-GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKID 302 (758)
T ss_pred HHHHHH-hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHH
Confidence 999997 999999999999999999999999999999999999999999988763 34678999999999976 78999
Q ss_pred HHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 334 AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 334 ~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
.|..+++.+...+.|||+.|.+++..+++.+++. |+++..+||+|+|..|..++..|-..+--||
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vL 369 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVL 369 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEE
Confidence 9999999999999999999999999999999887 8999999999999999999999987665554
No 9
>KOG0333|consensus
Probab=100.00 E-value=3.1e-50 Score=376.25 Aligned_cols=293 Identities=31% Similarity=0.455 Sum_probs=271.4
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC---------CC
Q psy11867 101 SVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP---------SI 171 (399)
Q Consensus 101 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~---------~~ 171 (399)
++.+|++.+++..+++.+...||..|+|||.+|+|..+. .+|+|..|.||||||++|++|++..+.. ..
T Consensus 243 plrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ--~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQ--NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred cccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhc--cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 378899999999999999999999999999999999998 6999999999999999999999877632 23
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCcee
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIK 248 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~ 248 (399)
.+|+++|++|||+||+|+.++-.+|++.+ ++.+..++||.+.+.+ ...+|+|+|+|||+|++.+ .+..+-++++.
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L-enr~lvl~qct 398 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL-ENRYLVLNQCT 398 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHHHH-HHHHHHhccCc
Confidence 58999999999999999999999999988 6899999999988766 3678999999999999985 55788899999
Q ss_pred EEEEechhhHhhcCCchHHHHHHHHhCCCC-------------------------CcEEEEEeeCChhHHHHHHhhCCCC
Q psy11867 249 VFVLDEADVMIATQGHQDFSIRIQKRLPSD-------------------------CQIMLFSATYDKEVMEFAQDMVPNP 303 (399)
Q Consensus 249 ~lViDEah~l~~~~~~~~~~~~i~~~l~~~-------------------------~q~l~~SAT~~~~v~~~~~~~~~~p 303 (399)
+||+||||+|+++ ||.+.+..++..+|.. +|+++||||+|+.+..+++.|+++|
T Consensus 399 yvvldeadrmiDm-gfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~p 477 (673)
T KOG0333|consen 399 YVVLDEADRMIDM-GFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRP 477 (673)
T ss_pred eEeccchhhhhcc-cccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCC
Confidence 9999999999987 9999999999988631 6999999999999999999999999
Q ss_pred eEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHH
Q psy11867 304 LIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQR 383 (399)
Q Consensus 304 ~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R 383 (399)
+.+.++......+.++|.++.+.. ++|...|..++......++|||+|+++.|++||+.|.+.|++|..|||+-+++||
T Consensus 478 v~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 478 VVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred eEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 999999999999999999998876 6679999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccC
Q psy11867 384 LSILDRFREGEFKIYS 399 (399)
Q Consensus 384 ~~v~~~F~~G~~~ILV 399 (399)
+.+++.||+|...|||
T Consensus 557 e~aL~~fr~~t~dIlV 572 (673)
T KOG0333|consen 557 ENALADFREGTGDILV 572 (673)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 9999999999999987
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-49 Score=394.46 Aligned_cols=292 Identities=31% Similarity=0.504 Sum_probs=263.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|++++|++.++++|.++||..|||+|.+|+|.++. |+|++++||||||||++|++|+++.+......+++|||+|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~--g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILA--GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeC
Confidence 35799999999999999999999999999999999998 7999999999999999999999999976656678999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|++||.|+.+.++.++....++.+...+||.....+. ...++|+|+||++|.+++.+ +.+.++++++||+||||+|
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999998776678888888887664432 45779999999999998654 5677899999999999999
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
++. +|...+..++..++...|+++||||+++.+..++..++.+|..+.+.... ....+.+.++.+.. ..|...+..+
T Consensus 160 l~~-g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~l 236 (460)
T PRK11776 160 LDM-GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRL 236 (460)
T ss_pred hCc-CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHH
Confidence 975 78888999999999999999999999999999999999999988876544 34568888888876 4588999999
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+......++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLV 297 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLV 297 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 9888888999999999999999999999999999999999999999999999999999986
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-49 Score=399.24 Aligned_cols=294 Identities=29% Similarity=0.438 Sum_probs=255.8
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-----CCCC
Q psy11867 100 YSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-----IQEP 174 (399)
Q Consensus 100 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 174 (399)
.++.+|+++++++.++++|.++||..||++|.++||.+++ |+|+|++||||||||++|++|++.++... ..++
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~--G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALS--GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3477899999999999999999999999999999999999 79999999999999999999999876432 2468
Q ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEE
Q psy11867 175 QVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFV 251 (399)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lV 251 (399)
++|||+||+|||.|+.+.+++++... .+.+...++|.....+ ....++|+|+||++|++++.. ....++++++||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lV 282 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLV 282 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 89999999999999999999998765 6777788888655433 245689999999999998654 566789999999
Q ss_pred EechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCC-CCeEEeccccc-ccccceeEEEEEeCChh
Q psy11867 252 LDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVP-NPLIIKLKREE-ESLDNIKQHYVMCKNID 329 (399)
Q Consensus 252 iDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~-~p~~i~~~~~~-~~~~~i~~~~~~~~~~~ 329 (399)
|||||+|++. +|...+..++..+++.+|+++||||++..+..+++.++. +|+.+.+.... ....++.+.+..+.. .
T Consensus 283 iDEAd~mld~-gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~ 360 (545)
T PTZ00110 283 LDEADRMLDM-GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-H 360 (545)
T ss_pred eehHHhhhhc-chHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-h
Confidence 9999999985 899999999999999999999999999999999998875 58877766544 345678888777754 5
Q ss_pred hHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 330 EKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 330 ~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.|...|..++... ..+++||||++++.|+.|++.|...|+.+..+||++++.+|..+++.|++|+.+|||
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILV 432 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMI 432 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEE
Confidence 6777777777665 357999999999999999999999999999999999999999999999999999986
No 12
>KOG0340|consensus
Probab=100.00 E-value=4.5e-50 Score=359.38 Aligned_cols=293 Identities=27% Similarity=0.420 Sum_probs=263.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
...|..|||++|+.+.|.++|++.|||+|..|||.||+ |+|+|.+|.||||||++|.+|+++++..+..+..++|++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe--Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILE--GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhc--ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 56799999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhcc---ccccCCceeEEEEech
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKY---RFFDLSKIKVFVLDEA 255 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~---~~~~~~~~~~lViDEa 255 (399)
|||||.|+.+.|..+++.+ ++++..++||.++-.+. ...+|++|+||||+.+++..+ -.+.+++++++|+|||
T Consensus 84 TrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred hHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 9999999999999999987 89999999998774443 567899999999999997665 2345889999999999
Q ss_pred hhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCC--CeEEecccccccccceeEEEEEeCChhhHHH
Q psy11867 256 DVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPN--PLIIKLKREEESLDNIKQHYVMCKNIDEKFE 333 (399)
Q Consensus 256 h~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (399)
|++++. .|.+.+..+...+|..+|+++||||+++.+..+....... +..........+++.+.|.|+.|+. +.|..
T Consensus 163 DrvL~~-~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkda 240 (442)
T KOG0340|consen 163 DRVLAG-CFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDA 240 (442)
T ss_pred hhhhcc-chhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHH
Confidence 999974 8999999999999999999999999999888776655554 4444555666788899999999975 67778
Q ss_pred HHHHHhccCCC---CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 334 AVSNIYGVVTI---GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 334 ~l~~ll~~~~~---~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++.+++.... +.++||+|+..+|+.|+..|...++++..+||.|+|.+|...+.+||++.++||+
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ili 309 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEE
Confidence 88888876644 6799999999999999999999999999999999999999999999999999985
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.9e-49 Score=399.35 Aligned_cols=293 Identities=31% Similarity=0.525 Sum_probs=266.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|.+++|++.++++|.++||..|||+|.++||.++. |+|+|++||||||||++|++|+++.+......+++|||+|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~--g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~P 82 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN--GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAP 82 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeC
Confidence 34699999999999999999999999999999999998 7999999999999999999999999877666789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|++||.|+++.++.+...+.++.+...+||.....+. ...++|+|+||++|++++.+ ..+.++++++|||||||.|
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHH
Confidence 9999999999999998877788888888988765443 45689999999999998654 5678999999999999999
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
+.. +|...+..++..++..+|+++||||+|..+..+++.++.+|..+.+.........+.+.|+.+.. ..|...+..+
T Consensus 162 l~~-gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~ 239 (629)
T PRK11634 162 LRM-GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRF 239 (629)
T ss_pred hhc-ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHH
Confidence 875 88888999999999999999999999999999999999999998888777777788888877754 5688889999
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+......++||||++++.|..|+..|...|+.+..+||+|++.+|..++++|++|+++|||
T Consensus 240 L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILV 300 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 (629)
T ss_pred HHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 8887778999999999999999999999999999999999999999999999999999997
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.5e-49 Score=385.07 Aligned_cols=292 Identities=29% Similarity=0.470 Sum_probs=257.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-------CCCC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-------IQEP 174 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-------~~~~ 174 (399)
-.+|++++|++.++++|.++||..|||+|.+|||.++. |+|++++||||||||++|++|+++.+... ..++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~--g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLA--GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCc
Confidence 36899999999999999999999999999999999998 79999999999999999999999887532 2357
Q ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEE
Q psy11867 175 QVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFV 251 (399)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lV 251 (399)
++|||+||++||.|+++.+..+.... ++.+....||....... ...++|+|+||++|++++. ...+.+++++++|
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~-~~~~~l~~v~~lV 162 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK-QNHINLGAIQVVV 162 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHH-cCCcccccccEEE
Confidence 89999999999999999999998876 68888888887654432 4567999999999999864 4567899999999
Q ss_pred EechhhHhhcCCchHHHHHHHHhCCC--CCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChh
Q psy11867 252 LDEADVMIATQGHQDFSIRIQKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNID 329 (399)
Q Consensus 252 iDEah~l~~~~~~~~~~~~i~~~l~~--~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~ 329 (399)
+||||+|++. ++...+..++..++. ..+.++||||++..+..++...+.+|..+.+.........+.+.+..+ ...
T Consensus 163 iDEad~l~~~-~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~ 240 (423)
T PRK04837 163 LDEADRMFDL-GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNE 240 (423)
T ss_pred EecHHHHhhc-ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHH
Confidence 9999999975 788888888888874 567899999999999999999999999888877666667777776655 446
Q ss_pred hHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 330 EKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 330 ~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.|...+..++......++||||++++.|+.+++.|...|+++..+||+|++.+|..+++.|++|+++|||
T Consensus 241 ~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLV 310 (423)
T PRK04837 241 EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILV 310 (423)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEE
Confidence 7888899998877778999999999999999999999999999999999999999999999999999986
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-48 Score=394.48 Aligned_cols=292 Identities=30% Similarity=0.500 Sum_probs=258.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-------CCCCe
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-------IQEPQ 175 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-------~~~~~ 175 (399)
.+|++++|++.++++|.++||..|||+|.++||.+++ |+|++++||||||||++|++|+++++... ...++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~--G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALP--GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 4699999999999999999999999999999999998 79999999999999999999999987432 12478
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEE
Q psy11867 176 VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVL 252 (399)
Q Consensus 176 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lVi 252 (399)
+|||+||++||.|+++.+++++... ++.+...+|+.....+. ...++|+|+||++|++++.....+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 9999999999999999999998876 78888889987765432 4567999999999999977666678899999999
Q ss_pred echhhHhhcCCchHHHHHHHHhCCC--CCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhh
Q psy11867 253 DEADVMIATQGHQDFSIRIQKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDE 330 (399)
Q Consensus 253 DEah~l~~~~~~~~~~~~i~~~l~~--~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~ 330 (399)
||||+|++. +|...+..+++.++. .+|+++||||++..+..++..++.+|..+.+.........+.+.++.+.. ..
T Consensus 166 DEAh~lld~-gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~ 243 (572)
T PRK04537 166 DEADRMFDL-GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD-EE 243 (572)
T ss_pred cCHHHHhhc-chHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH-HH
Confidence 999999875 788888889988886 68999999999999999999999988877766655566777888776654 67
Q ss_pred HHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 331 KFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 331 k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
|...+..++......++||||++++.|+.|++.|...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 244 k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLV 312 (572)
T PRK04537 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312 (572)
T ss_pred HHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 888888888877778999999999999999999999999999999999999999999999999999997
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.3e-48 Score=389.77 Aligned_cols=304 Identities=26% Similarity=0.463 Sum_probs=260.6
Q ss_pred ccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHH
Q psy11867 86 QELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLS 165 (399)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~ 165 (399)
.++.+.+.+.+. ++.+|++++|++.++++|.++||..|||+|.+|||.+++ |+|++++||||||||++|++|++.
T Consensus 107 ~~i~~~g~~~p~---pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~--g~dviv~ApTGSGKTlayllPil~ 181 (518)
T PLN00206 107 LEIHVKGEAVPP---PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALS--GRSLLVSADTGSGKTASFLVPIIS 181 (518)
T ss_pred CCCEecCCCCCc---hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCCEEEEecCCCCccHHHHHHHHH
Confidence 345555554444 467899999999999999999999999999999999998 799999999999999999999998
Q ss_pred hhCC-------CCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHh
Q psy11867 166 RVNP-------SIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDW 235 (399)
Q Consensus 166 ~l~~-------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~ 235 (399)
++.. ...++++|||+||+|||.|+++.++.+.... ++.+....||.....+. ..+++|+|+||++|.++
T Consensus 182 ~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~ 260 (518)
T PLN00206 182 RCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260 (518)
T ss_pred HHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHH
Confidence 7632 2256899999999999999999999998776 57777788887654432 45679999999999998
Q ss_pred hhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccc
Q psy11867 236 GLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESL 315 (399)
Q Consensus 236 ~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~ 315 (399)
+.+ ..+.++++++|||||||+|++. +|...+..++..++ +.|+++||||+++.+..++..++.++..+.+.......
T Consensus 261 l~~-~~~~l~~v~~lViDEad~ml~~-gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 261 LSK-HDIELDNVSVLVLDEVDCMLER-GFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPN 337 (518)
T ss_pred HHc-CCccchheeEEEeecHHHHhhc-chHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence 755 4678999999999999999975 78888888888875 68999999999999999999999999999888776666
Q ss_pred cceeEEEEEeCChhhHHHHHHHHhccCC--CCcEEEEecchHhHHHHHHHHHH-CCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 316 DNIKQHYVMCKNIDEKFEAVSNIYGVVT--IGQAMIFCHTRKTAAWLAEKMSK-EGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~--~~k~IIF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
..+.+.+.++.. ..|...+.+++.... .+++||||+++..|+.+++.|.. .|+++..+||+|++.+|..+++.|++
T Consensus 338 ~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 338 KAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred cceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 778888888765 456667777776543 36899999999999999999975 58999999999999999999999999
Q ss_pred CCCcccC
Q psy11867 393 GEFKIYS 399 (399)
Q Consensus 393 G~~~ILV 399 (399)
|+++|||
T Consensus 417 G~~~ILV 423 (518)
T PLN00206 417 GEVPVIV 423 (518)
T ss_pred CCCCEEE
Confidence 9999986
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-48 Score=384.52 Aligned_cols=290 Identities=31% Similarity=0.541 Sum_probs=257.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC------CCCeEE
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI------QEPQVL 177 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~------~~~~~l 177 (399)
+|++++|++.++++|.++||..||++|.++||.+++ |+|++++||||||||++|++|+++.+.... ...++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~--g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLE--GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 589999999999999999999999999999999998 799999999999999999999999885432 235899
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEec
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDE 254 (399)
||+||++||.|+++.++.+.... ++.+...+||.....+. ...++|+|+||++|++++.. ..+.++++++|||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 99999999999999999998775 67777888887665432 45679999999999998643 566799999999999
Q ss_pred hhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHH
Q psy11867 255 ADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEA 334 (399)
Q Consensus 255 ah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (399)
||+|++. ++...+..++..++...|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.. ..+...
T Consensus 158 ah~ll~~-~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 235 (456)
T PRK10590 158 ADRMLDM-GFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKREL 235 (456)
T ss_pred HHHHhcc-ccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHH
Confidence 9999975 78888888999999999999999999999999999999999988877666667778888877654 567778
Q ss_pred HHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 335 VSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 335 l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+..++......++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 236 l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 300 (456)
T PRK10590 236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 (456)
T ss_pred HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 88888877778999999999999999999999999999999999999999999999999999997
No 18
>KOG0342|consensus
Probab=100.00 E-value=3.4e-49 Score=367.54 Aligned_cols=296 Identities=28% Similarity=0.392 Sum_probs=267.8
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC----CCCe
Q psy11867 100 YSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI----QEPQ 175 (399)
Q Consensus 100 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~----~~~~ 175 (399)
.....|++..|++..++++.++||...|++|..++|.++. |+|+++.|.||||||+||++|+++.+.... .+..
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~--gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLE--GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCC--CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 3456789999999999999999999999999999999999 699999999999999999999999885433 3456
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEE
Q psy11867 176 VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVL 252 (399)
Q Consensus 176 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lVi 252 (399)
+||+|||||||.|++.+++++..+.+.+.+..+.||.+..... ...++|+|+|||||++|+.+...+-.++++++|+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 9999999999999999999999988788999999998764332 4488999999999999999999999999999999
Q ss_pred echhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC-CCCeEEecccc--cccccceeEEEEEeCChh
Q psy11867 253 DEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV-PNPLIIKLKRE--EESLDNIKQHYVMCKNID 329 (399)
Q Consensus 253 DEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~-~~p~~i~~~~~--~~~~~~i~~~~~~~~~~~ 329 (399)
||||++++. ||.+.+..|++.+|..+|+++||||.+..|.++++..+ ++|+.+..... ..+.+.+.|.|+.++. +
T Consensus 237 DEADrlLd~-GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~-~ 314 (543)
T KOG0342|consen 237 DEADRLLDI-GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS-D 314 (543)
T ss_pred ecchhhhhc-ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc-c
Confidence 999999986 99999999999999999999999999999999999776 46888877654 4578899999999987 4
Q ss_pred hHHHHHHHHhccCCC-CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 330 EKFEAVSNIYGVVTI-GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 330 ~k~~~l~~ll~~~~~-~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++..+..+++.+.. .++||||.|...+..+++.|.....+|..+||+++|..|..+..+|++.+.-|||
T Consensus 315 ~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~ 385 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV 385 (543)
T ss_pred chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEE
Confidence 558889999988877 8999999999999999999999999999999999999999999999999988885
No 19
>KOG0345|consensus
Probab=100.00 E-value=1.6e-48 Score=360.90 Aligned_cols=291 Identities=27% Similarity=0.446 Sum_probs=260.8
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC--C-CC--CeE
Q psy11867 104 TFEALH--LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS--I-QE--PQV 176 (399)
Q Consensus 104 ~f~~~~--l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~--~-~~--~~~ 176 (399)
.|++++ |++++++++..+||...||+|..+||.+++ ++||++.|+||||||+||++|+++.+... . .. .-+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~--~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLK--NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhc--CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 466664 669999999999999999999999999999 69999999999999999999999998221 1 11 258
Q ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhc-cccccCCceeEEE
Q psy11867 177 LCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLK-YRFFDLSKIKVFV 251 (399)
Q Consensus 177 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~-~~~~~~~~~~~lV 251 (399)
|||+||||||.|+.+++..|..+++.++..+.+||...+... ..+++|+|||||||.+++.+ ...++++++.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 999999999999999999999998899999999997765543 56789999999999999866 4556788999999
Q ss_pred EechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccc--cccceeEEEEEeCChh
Q psy11867 252 LDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE--SLDNIKQHYVMCKNID 329 (399)
Q Consensus 252 iDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~ 329 (399)
+||||+++++ ||...+..|+..+|+.+++=+||||....+.++.+..+++|+.+.+..... +++.+..+|..|.. +
T Consensus 163 LDEADrLldm-gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~ 240 (567)
T KOG0345|consen 163 LDEADRLLDM-GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-D 240 (567)
T ss_pred ecchHhHhcc-cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-H
Confidence 9999999987 999999999999999999999999999999999999999999999987775 78889999999976 7
Q ss_pred hHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 330 EKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 330 ~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
.|...+.+++.....+++|||++|...++..+..|... ...+..+||.|.+.+|..+++.|++-.-.||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 89999999999999999999999999999999988776 6789999999999999999999998544443
No 20
>KOG0339|consensus
Probab=100.00 E-value=9.8e-49 Score=364.61 Aligned_cols=298 Identities=29% Similarity=0.462 Sum_probs=272.7
Q ss_pred CCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-----C
Q psy11867 97 SPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-----I 171 (399)
Q Consensus 97 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-----~ 171 (399)
+|..++.+|+.++++..|+.++.+.-|.+|||+|.+++|..+. |+||+..|.||||||.||+.|++.+++.. .
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptals--grdvigIAktgSgktaAfi~pm~~himdq~eL~~g 294 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALS--GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPG 294 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccc--cccchheeeccCcchhHHHHHHHHHhcchhhhcCC
Confidence 3344578899999999999999999999999999999999999 79999999999999999999999988543 3
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCcee
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIK 248 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~ 248 (399)
.+|..||++|||+||.|++.++++|++.+ ++++.+++||.+...+. ..++.|||||||||+++ .+.+..++.++.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~-VkmKatn~~rvS 372 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDM-VKMKATNLSRVS 372 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHH-HHhhcccceeee
Confidence 68999999999999999999999999987 88988888887664443 56789999999999999 466888999999
Q ss_pred EEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh
Q psy11867 249 VFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI 328 (399)
Q Consensus 249 ~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~ 328 (399)
||||||||+|++. ||..++..|...+++++|+|+||||++..++.+++.++.+|+.+....-......|.|.+.+|.+.
T Consensus 373 ~LV~DEadrmfdm-Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 373 YLVLDEADRMFDM-GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred EEEEechhhhhcc-ccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence 9999999999986 999999999999999999999999999999999999999999998888788889999999999999
Q ss_pred hhHHHHHHH-HhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSN-IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~-ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..|...|.. |......+++|||+.-+..++.++..|...|+.|..+||+|.|.+|.+++..|+.+...|||
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlv 523 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLV 523 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEE
Confidence 999887655 44555669999999999999999999999999999999999999999999999999999986
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.2e-47 Score=377.01 Aligned_cols=291 Identities=27% Similarity=0.467 Sum_probs=261.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC----CCCCeEEEE
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----IQEPQVLCL 179 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----~~~~~~lil 179 (399)
+|++++|++.+++.|.++||..|+++|.+++|.+++ |+|++++||||+|||++|++|+++.+... ...+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~--g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALD--GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 699999999999999999999999999999999998 79999999999999999999999987532 234689999
Q ss_pred eCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechh
Q psy11867 180 APTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 180 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah 256 (399)
+||++||.|+++.+..+.... ++.+....||....... ...++|+|+||++|++++.. +.++++++++|||||||
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah 157 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEAD 157 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHH
Confidence 999999999999999998876 68888888887664433 45678999999999998644 67788999999999999
Q ss_pred hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCCh-hHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHH
Q psy11867 257 VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK-EVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAV 335 (399)
Q Consensus 257 ~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~-~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (399)
+|++. ++...+..+...++...|+++||||++. .+..+...++.+|..+..........++.+.+..+.....|...+
T Consensus 158 ~~l~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 158 RMLDM-GFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HHhCC-CcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHH
Confidence 99975 7888888999988889999999999985 588888899999999888777777778889888888778899999
Q ss_pred HHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 336 SNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 336 ~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++.....+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLV 300 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLV 300 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 9999877778999999999999999999999999999999999999999999999999999997
No 22
>KOG0346|consensus
Probab=100.00 E-value=8.2e-49 Score=359.81 Aligned_cols=293 Identities=28% Similarity=0.436 Sum_probs=257.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC------CCCCCeE
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP------SIQEPQV 176 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~------~~~~~~~ 176 (399)
.+|++++|++.+++++.+.||.+||-||+.|||.+|. |+|+++.|.||||||+||++|+++.+.. ...++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE--gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE--GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhc--CcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 6899999999999999999999999999999999999 7999999999999999999999998732 3457889
Q ss_pred EEEeCcHHHHHHHHHHHHHHhccCC-CcE---EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEE
Q psy11867 177 LCLAPTYELAIQIGEVVAKMGKHIT-DLS---VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVL 252 (399)
Q Consensus 177 lil~Pt~~La~Q~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lVi 252 (399)
+||+||+|||+|+|.++.++...++ .++ +................++|+|+||++++.++.......+..+.++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999987764 222 222222333333346778999999999999976544467899999999
Q ss_pred echhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccc-cccceeEEEEEeCChhhH
Q psy11867 253 DEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNIDEK 331 (399)
Q Consensus 253 DEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~k 331 (399)
||||.++. .||.+.+..+.+.+|+.+|.++||||+++++..+-+.++.+|+++.+...+. ....+.|+++.|. ..+|
T Consensus 177 DEADLlls-fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DK 254 (569)
T KOG0346|consen 177 DEADLLLS-FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDK 254 (569)
T ss_pred chhhhhhh-cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchh
Confidence 99999997 4999999999999999999999999999999999999999999998876553 4578899999998 5789
Q ss_pred HHHHHHHhccCC-CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 332 FEAVSNIYGVVT-IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 332 ~~~l~~ll~~~~-~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+..++.+++..- .|+.|||+|+.+.|..|.-.|.+.|++..++.|+|+..-|.-++++|..|-++|++
T Consensus 255 flllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivI 323 (569)
T KOG0346|consen 255 FLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVI 323 (569)
T ss_pred HHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEE
Confidence 999888887654 48999999999999999999999999999999999999999999999999999874
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-46 Score=372.49 Aligned_cols=292 Identities=30% Similarity=0.533 Sum_probs=255.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC-------CCC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI-------QEP 174 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~-------~~~ 174 (399)
...|.+++|++.++++|.++||..|+++|.++|+.+++ |+|+++++|||||||++|++|+++.+.... ..+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~--G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLA--GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 45789999999999999999999999999999999998 799999999999999999999999886532 257
Q ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEE
Q psy11867 175 QVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVF 250 (399)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~l 250 (399)
++|||+||++||.|+++.++.+.... ++.+....||....... ...++|+|+||++|+++... ....++++++|
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 89999999999999999999998776 67888888886554322 34679999999999987543 45678999999
Q ss_pred EEechhhHhhcCCchHHHHHHHHhCCC--CCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh
Q psy11867 251 VLDEADVMIATQGHQDFSIRIQKRLPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI 328 (399)
Q Consensus 251 ViDEah~l~~~~~~~~~~~~i~~~l~~--~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~ 328 (399)
||||||++++. ++...+..+...++. +.|+++||||++..+..++..++.+|..+.+........++.+.+..+..
T Consensus 242 ViDEah~l~~~-~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 319 (475)
T PRK01297 242 VLDEADRMLDM-GFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG- 319 (475)
T ss_pred EechHHHHHhc-ccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-
Confidence 99999999875 787888888888764 57999999999999999999999999998877766666677777776654
Q ss_pred hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..|...+..++......++||||++++.|+.+++.|...|+.+..+||++++++|..+++.|++|+++|||
T Consensus 320 ~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLv 390 (475)
T PRK01297 320 SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLV 390 (475)
T ss_pred hhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEE
Confidence 56788888888887778999999999999999999999999999999999999999999999999999986
No 24
>KOG0341|consensus
Probab=100.00 E-value=1.2e-48 Score=353.61 Aligned_cols=310 Identities=24% Similarity=0.379 Sum_probs=270.4
Q ss_pred hccccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 81 LIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
+++....+.+.+.+++.| +++|.++.++..+++.|++.|+.+|||||.+.+|.+++ |+|+|..|-||||||++|+
T Consensus 151 ~vRk~~~I~veGd~ipPP---IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLs--GRDmIGIAfTGSGKTlvFv 225 (610)
T KOG0341|consen 151 LVRKQLHILVEGDDIPPP---IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFV 225 (610)
T ss_pred HHHHhheEEeeCCCCCCc---hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEee--cCceeeEEeecCCceEEEe
Confidence 344445566667777766 67899999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhC--------CCCCCCeEEEEeCcHHHHHHHHHHHHHHhc-----cCCCcEEEEEEcCchhhhhh---ccCCcE
Q psy11867 161 LTMLSRVN--------PSIQEPQVLCLAPTYELAIQIGEVVAKMGK-----HITDLSVRYAVRGENLERNK---KITEQI 224 (399)
Q Consensus 161 l~il~~l~--------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~I 224 (399)
+|++.... ....+|..||+||+||||.|+++.+..+.. .++.++.....||..+..+. +.+.||
T Consensus 226 LP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 226 LPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred HHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 99987542 234689999999999999999999998864 34567778889998876654 678899
Q ss_pred EEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCe
Q psy11867 225 IIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPL 304 (399)
Q Consensus 225 lV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~ 304 (399)
+|+|||||.+++.+ +...+.-++++++||||+|+++ ||.+.+..++..+...+|+++||||+|..++.|++.-+..|+
T Consensus 306 vVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDm-GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPv 383 (610)
T KOG0341|consen 306 VVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDM-GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPV 383 (610)
T ss_pred EEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhc-cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccce
Confidence 99999999999654 6778899999999999999997 999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHH
Q psy11867 305 IIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRL 384 (399)
Q Consensus 305 ~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~ 384 (399)
.+.+++...+.-++.|.+.+++. +.|.-.+.+.+... ..+++|||..+..+..+.++|--.|..+..+|||-.+++|.
T Consensus 384 tvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 384 TVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRH 461 (610)
T ss_pred EEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHH
Confidence 99999988877777777666654 44555555555433 36899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccC
Q psy11867 385 SILDRFREGEFKIYS 399 (399)
Q Consensus 385 ~v~~~F~~G~~~ILV 399 (399)
..++.||.|+-+|||
T Consensus 462 ~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 462 YAIEAFRAGKKDVLV 476 (610)
T ss_pred HHHHHHhcCCCceEE
Confidence 999999999999997
No 25
>KOG0335|consensus
Probab=100.00 E-value=5.1e-47 Score=358.41 Aligned_cols=313 Identities=26% Similarity=0.380 Sum_probs=269.6
Q ss_pred hccccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 81 LIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+..+..+.+.......|. .+.+|.+..+.+.+..++...||..|||+|+.+||.+.. |+++++||+||||||.||+
T Consensus 53 nfd~~~~i~v~~~G~~~p~-~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~--Grdl~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 53 NFDKYNDIPVKVSGRDVPP-HIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISG--GRDLMACAQTGSGKTAAFL 129 (482)
T ss_pred ccCCccceeeeccCCccCC-CcccccccchhHHHhhccccccccCCCcceeeccceeec--CCceEEEccCCCcchHHHH
Confidence 3455555555444333332 245889889999999999999999999999999999998 7999999999999999999
Q ss_pred HHHHHhhCCCC----------CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEe
Q psy11867 161 LTMLSRVNPSI----------QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIG 227 (399)
Q Consensus 161 l~il~~l~~~~----------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~ 227 (399)
+|++..+.... .+|++||++||||||.|++++.+++.-.. .+.....+||.+...+. ...++|+||
T Consensus 130 iPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlva 208 (482)
T KOG0335|consen 130 IPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVA 208 (482)
T ss_pred HHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEe
Confidence 99999885432 25899999999999999999999986543 67888888986654433 678999999
Q ss_pred CchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCC----CCcEEEEEeeCChhHHHHHHhhCCC-
Q psy11867 228 TPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS----DCQIMLFSATYDKEVMEFAQDMVPN- 302 (399)
Q Consensus 228 Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~----~~q~l~~SAT~~~~v~~~~~~~~~~- 302 (399)
|||+|.+++ +.+.+.+.++++||+||||+|++..+|..++..|+..... ..|+++||||+|..+..++..++.+
T Consensus 209 TpGrL~d~~-e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~ 287 (482)
T KOG0335|consen 209 TPGRLKDLI-ERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN 287 (482)
T ss_pred cCchhhhhh-hcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc
Confidence 999999985 6688999999999999999999966999999999887743 7899999999999999999999987
Q ss_pred CeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCC----CC-----cEEEEecchHhHHHHHHHHHHCCCeEEE
Q psy11867 303 PLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVT----IG-----QAMIFCHTRKTAAWLAEKMSKEGLNVGL 373 (399)
Q Consensus 303 p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~----~~-----k~IIF~~s~~~a~~l~~~L~~~g~~v~~ 373 (399)
.+.+.+.....+..++.|.+.++.. .+|...|.+++.... .+ +++|||.+++.|..|+..|...++++..
T Consensus 288 yi~laV~rvg~~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~s 366 (482)
T KOG0335|consen 288 YIFLAVGRVGSTSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKS 366 (482)
T ss_pred ceEEEEeeeccccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCcee
Confidence 8888888888999999999999977 456667777776433 23 7999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 374 LSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 374 lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+||+.++.+|.+.++.|+.|++.|||
T Consensus 367 Ihg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 367 IHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred ecchhhhhHHHHHHHHhhcCCcceEE
Confidence 99999999999999999999999987
No 26
>KOG0336|consensus
Probab=100.00 E-value=7.5e-47 Score=344.03 Aligned_cols=292 Identities=30% Similarity=0.439 Sum_probs=256.2
Q ss_pred ccccccc-CCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC------CCCC
Q psy11867 101 SVKTFEA-LHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP------SIQE 173 (399)
Q Consensus 101 ~~~~f~~-~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~------~~~~ 173 (399)
++.+|++ ++..+++++++.+.||.+|||||++|||.+|+ |.|++..|+||+|||++||+|.+-++.. ...+
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQ--G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQ--GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeec--CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 3567775 58899999999999999999999999999999 7999999999999999999999887743 2357
Q ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEE
Q psy11867 174 PQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVF 250 (399)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~l 250 (399)
+.+|+++||++||.|+.-..+++.- .+++..+++||.+-..+ .+.+.+|+|+||++|.++. ....+++..+.|+
T Consensus 295 p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~-~~n~i~l~siTYl 371 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQ-MDNVINLASITYL 371 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhh-hcCeeeeeeeEEE
Confidence 8899999999999999888877643 36677777777544332 3667899999999999984 4467899999999
Q ss_pred EEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccc-cccceeEEEEEeCChh
Q psy11867 251 VLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNID 329 (399)
Q Consensus 251 ViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~ 329 (399)
|+||||+|+++ +|..++.+|+--.++++|+++.|||||+.|..++..|+++|+.+.++..+. +...++|.+ .+....
T Consensus 372 VlDEADrMLDM-gFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~ 449 (629)
T KOG0336|consen 372 VLDEADRMLDM-GFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDS 449 (629)
T ss_pred Eecchhhhhcc-cccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccH
Confidence 99999999997 999999999999999999999999999999999999999999999887664 456778887 555667
Q ss_pred hHHHHHHHHhccCCC-CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 330 EKFEAVSNIYGVVTI-GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 330 ~k~~~l~~ll~~~~~-~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+|...+..++..... .++||||.++..|..|...|.-.|+.+..+||+..|.+|+.+++.|++|+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILv 520 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILV 520 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEE
Confidence 898888888877654 7999999999999999999988999999999999999999999999999999996
No 27
>KOG0327|consensus
Probab=100.00 E-value=4.3e-47 Score=344.71 Aligned_cols=290 Identities=39% Similarity=0.672 Sum_probs=267.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+.+|++++|+++|+++++..||.+|+.||+.||..+.. |.|+++++++|+|||.+|.+++++.+.......++|+++|
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~--G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIK--GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhcccccccc--CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 45899999999999999999999999999999999998 7999999999999999999999999987777788999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
|++||+|+.++.+.++... +.++....||....+. ....++|+|+|||++.+.+.. ..+..+.++++|+||||.
T Consensus 103 treLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMFVLDEADE 180 (397)
T ss_pred hHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEEeecchHh
Confidence 9999999999999998876 6777777777665432 245679999999999999655 477888999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
|+.. +|.+++..++..+|++.|++++|||+|.++....+.++.+|+.+.++..+.+++.++|+|+..... .|+..++.
T Consensus 181 mLs~-gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~-~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSR-GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE-EKLDTLCD 258 (397)
T ss_pred hhcc-chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc-ccccHHHH
Confidence 9975 999999999999999999999999999999999999999999999999999999999999988774 49999999
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++. ...+.+||||+++.+.++...|...|+.+..+||+|.+.+|..++++|+.|..+||+
T Consensus 259 l~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 259 LYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred HHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 999 667999999999999999999999999999999999999999999999999999985
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-45 Score=358.76 Aligned_cols=293 Identities=35% Similarity=0.622 Sum_probs=258.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.+.++|.++||..|+|+|.+|++.+++ |+|++++||||||||++|++|++..+.....+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~--~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILD--GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 46799999999999999999999999999999999998 7999999999999999999999999876656788999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|++|+.|+.+.++.++... .+......|+....... ....+|+|+||+++.+++.+ +.+.+++++++|+||||++
T Consensus 105 t~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEM 182 (401)
T ss_pred CHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHH
Confidence 9999999999999988764 55666666765443322 34578999999999988654 4567899999999999999
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
.+. ++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+........++.+.++.+.....+...+..+
T Consensus 183 ~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 183 LSR-GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred Hhc-chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 874 7777888889999999999999999999999999999999988777766667778888888887666677888888
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+......++||||++++.|+.+++.|...++.+..+||+|++.+|..+++.|++|+++|||
T Consensus 262 ~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLv 322 (401)
T PTZ00424 262 YETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLI 322 (401)
T ss_pred HHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 8877778999999999999999999999999999999999999999999999999999986
No 29
>KOG0348|consensus
Probab=100.00 E-value=7.3e-46 Score=347.61 Aligned_cols=295 Identities=26% Similarity=0.406 Sum_probs=247.9
Q ss_pred ccccccccCCCCHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC------CCC
Q psy11867 100 YSVKTFEALHLKPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP------SIQ 172 (399)
Q Consensus 100 ~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~------~~~ 172 (399)
+....|.++||++.+...|.. |++..||.+|.++||.++. |+|++|.|+||||||+||++|+++.+.. ...
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~--grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE--GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhc--CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 445779999999999999986 8999999999999999999 7999999999999999999999998843 246
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeE
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKV 249 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~ 249 (399)
|+.+|||+||||||.|+|+.+.++.+.+.-+.-...+||+.-... .+.+.+|+|+|||||++|+.+...+.+++++|
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 789999999999999999999999988755566677788755433 37889999999999999999999999999999
Q ss_pred EEEechhhHhhcCCchHHHHHHHHhC-------------CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccc-----
Q psy11867 250 FVLDEADVMIATQGHQDFSIRIQKRL-------------PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKRE----- 311 (399)
Q Consensus 250 lViDEah~l~~~~~~~~~~~~i~~~l-------------~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~----- 311 (399)
+|+||||++++. ||...+..|++.+ |+..|.+++|||+++.|.+++...+.||+.|.++..
T Consensus 291 lVlDEaDrlleL-Gfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 291 LVLDEADRLLEL-GFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEecchhHHHhc-cchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 999999999987 8888888888766 224688999999999999999999999999984321
Q ss_pred --------------------cccccceeEEEEEeCChhhHHHHHHHHh----ccCCCCcEEEEecchHhHHHHHHHHHHC
Q psy11867 312 --------------------EESLDNIKQHYVMCKNIDEKFEAVSNIY----GVVTIGQAMIFCHTRKTAAWLAEKMSKE 367 (399)
Q Consensus 312 --------------------~~~~~~i~~~~~~~~~~~~k~~~l~~ll----~~~~~~k~IIF~~s~~~a~~l~~~L~~~ 367 (399)
...++.+.|+|+.++..- .+-.|..++ +.....++|||+.+.+.++.-+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence 123456788888887632 333344433 3344468999999999999999888651
Q ss_pred ----------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 368 ----------------------GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 368 ----------------------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
+.++.-+||+|+|++|..+++.|...+-.||
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VL 501 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVL 501 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEE
Confidence 4568899999999999999999998776665
No 30
>KOG0334|consensus
Probab=100.00 E-value=7e-46 Score=373.42 Aligned_cols=305 Identities=28% Similarity=0.463 Sum_probs=275.3
Q ss_pred ceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhh
Q psy11867 88 LEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRV 167 (399)
Q Consensus 88 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l 167 (399)
+.+.+.+.+.| +.+|.+.+++..++..++++||..|+|||.+|||+++. |+|||.+|.||||||++|++|++.++
T Consensus 353 i~v~g~~~pkp---v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Ims--GrdvIgvakTgSGKT~af~LPmirhi 427 (997)
T KOG0334|consen 353 IKVKGKECPKP---VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMS--GRDVIGVAKTGSGKTLAFLLPMIRHI 427 (997)
T ss_pred eeeccCCCCcc---cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhcc--CcceEEeeccCCccchhhhcchhhhh
Confidence 55566666665 67899999999999999999999999999999999999 79999999999999999999999887
Q ss_pred CCC-----CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhcc
Q psy11867 168 NPS-----IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKY 239 (399)
Q Consensus 168 ~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~ 239 (399)
... ..+|.+||++||++||.|+++++++|.+.+ ++.+.+++||.....+. +.+..|+|||||++++.+..+
T Consensus 428 ~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n 506 (997)
T KOG0334|consen 428 KDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCAN 506 (997)
T ss_pred hcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhc
Confidence 432 358999999999999999999999999985 89999999998776554 445889999999999886433
Q ss_pred --ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccc
Q psy11867 240 --RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDN 317 (399)
Q Consensus 240 --~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~ 317 (399)
+..+++++.++|+||||+|+++ +|..+...|+..+++.+|+++||||+|..++.+++..+..|+.+.+........+
T Consensus 507 ~grvtnlrR~t~lv~deaDrmfdm-gfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 507 SGRVTNLRRVTYLVLDEADRMFDM-GFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred CCccccccccceeeechhhhhhee-ccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 3346778889999999999965 8999999999999999999999999999999999999999999999988888899
Q ss_pred eeEEEEEeCChhhHHHHHHHHhccCC-CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy11867 318 IKQHYVMCKNIDEKFEAVSNIYGVVT-IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396 (399)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~ll~~~~-~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ 396 (399)
+.|.+..|...+.|+..|..++.... .+++||||.....|..+.+.|.+.|+.|..+||+.++.+|..++++|++|.+.
T Consensus 586 V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 586 VTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred ceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 99999999988999999999997764 48999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy11867 397 IYS 399 (399)
Q Consensus 397 ILV 399 (399)
+||
T Consensus 666 LLv 668 (997)
T KOG0334|consen 666 LLV 668 (997)
T ss_pred EEE
Confidence 885
No 31
>KOG4284|consensus
Probab=100.00 E-value=6.5e-46 Score=354.18 Aligned_cols=295 Identities=28% Similarity=0.466 Sum_probs=277.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
...|+++.|...++.+|...+|..||+||..|||.++. +.|+|++|..|+|||++|.+.+++.+......++.+||+|
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~--kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFS--KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhc--ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 56899999999999999999999999999999999999 6999999999999999999999999998888999999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
|||+|.|+.+.+.+++..+.++.+..++||....... ...++|+||||||+.++ .+.+.++..++++||+||||.|+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL-~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQL-VELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHH-HHhcCCCccceeEEEeccHHhhh
Confidence 9999999999999999998899999999998765443 56788999999999988 57789999999999999999999
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh-------hhHH
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI-------DEKF 332 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~-------~~k~ 332 (399)
+...|.+.+..|...||..+|++.||||+|..+.+.+..+|++|..+++......+-+|+|+|+..... ..|.
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence 988899999999999999999999999999999999999999999999999999999999999876554 3488
Q ss_pred HHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 333 EAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 333 ~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|-.+++..+..++||||+....|+-++..|...|+.|.++.|.|++.+|..+++.+|.-.++|||
T Consensus 261 q~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILV 327 (980)
T KOG4284|consen 261 QKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILV 327 (980)
T ss_pred HHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999997
No 32
>KOG0347|consensus
Probab=100.00 E-value=8.4e-46 Score=348.16 Aligned_cols=297 Identities=23% Similarity=0.396 Sum_probs=252.7
Q ss_pred CCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-------
Q psy11867 98 PLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS------- 170 (399)
Q Consensus 98 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~------- 170 (399)
...++..|..|.++..++++|..+||..||+||..++|.+..+ ..|++..|.||||||+||.+||++.+...
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~g-k~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRG-KVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhcc-chhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 3456788999999999999999999999999999999999984 48999999999999999999999965322
Q ss_pred ----CCCCe--EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhcccc
Q psy11867 171 ----IQEPQ--VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRF 241 (399)
Q Consensus 171 ----~~~~~--~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~ 241 (399)
..+++ +||++||||||.|+...+..+.... ++.+..++||....++. ...++|||+||||||.++.+...
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 12444 9999999999999999999998764 89999999998876655 56889999999999999876544
Q ss_pred c--cCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-----CCCcEEEEEeeCCh---------------------hHH
Q psy11867 242 F--DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-----SDCQIMLFSATYDK---------------------EVM 293 (399)
Q Consensus 242 ~--~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-----~~~q~l~~SAT~~~---------------------~v~ 293 (399)
+ ++++++++|+||||||.+. |+.+.+..+++.+. ..+|++.||||++- .++
T Consensus 334 ~l~~~k~vkcLVlDEaDRmvek-ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 334 HLGNFKKVKCLVLDEADRMVEK-GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhhceEEEEccHHHHhhh-ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 2 6889999999999999986 77777778887775 46899999999632 344
Q ss_pred HHHHh--hCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeE
Q psy11867 294 EFAQD--MVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNV 371 (399)
Q Consensus 294 ~~~~~--~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v 371 (399)
.+++. +...|.+|.+.+...+...+....+.|+. .+|-..++.++...+ |++|||||++..+.+|+-.|...++..
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred HHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCC
Confidence 44443 23567899998888888889889999955 567666777766655 899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 372 GLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 372 ~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+|+.|.|.+|...+++|++....||+
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLi 518 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLI 518 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEE
Confidence 9999999999999999999998888774
No 33
>KOG0337|consensus
Probab=100.00 E-value=8.8e-44 Score=325.25 Aligned_cols=292 Identities=28% Similarity=0.449 Sum_probs=267.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-CCCCeEEEEe
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-IQEPQVLCLA 180 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~ 180 (399)
...|+.+||+..+++++.+.||+.|||||+..+|.+|. ++|++..|-||||||.||++|+++++... ..+.|+++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe--~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILE--GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceee--ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 35799999999999999999999999999999999999 79999999999999999999999998654 3567999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||++|+.|+.+.++.+++.. ++...+.+||..++.+. ..+++||++|||+++++..+. .+.++.+.||||||||+
T Consensus 98 ptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADR 175 (529)
T ss_pred CcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhH
Confidence 99999999999999999987 78888899998887765 446899999999999876554 37899999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
++++ ||.+++..++..+|...|+++||||+|..+..+++.-+.+|..++++.+....+..+..+..+.. ++|...|..
T Consensus 176 lfem-gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~-a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEM-GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK-AEKEAALLS 253 (529)
T ss_pred HHhh-hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-HHHHHHHHH
Confidence 9986 99999999999999999999999999999999999999999999999888888888888888876 678888888
Q ss_pred HhccCCC-CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTI-GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~-~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++..... .+++|||.++.+++.+...|...|+.+..+.|.|.+..|..-+++|+.|+..+||
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEE
Confidence 8876654 6899999999999999999999999999999999999999999999999999886
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.8e-41 Score=345.38 Aligned_cols=279 Identities=16% Similarity=0.193 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHH
Q psy11867 109 HLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 109 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 188 (399)
.+++.+.++|.++||.+||++|.+++|.+++ |+|+++++|||||||+||++|+++.+... .+.++|||+||+|||.|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~--G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHA--GRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAAD 96 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHC--CCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHH
Confidence 3889999999999999999999999999998 79999999999999999999999998653 56799999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCchhhhh--hccCCcEEEeCchhHHHhhhcccc---ccCCceeEEEEechhhHhhcCC
Q psy11867 189 IGEVVAKMGKHITDLSVRYAVRGENLERN--KKITEQIIIGTPGKVLDWGLKYRF---FDLSKIKVFVLDEADVMIATQG 263 (399)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~IlV~Tp~~l~~~~~~~~~---~~~~~~~~lViDEah~l~~~~~ 263 (399)
+.+.++.++ ..++++....|+...... ....++|+|+||++|...+..... ..++++++|||||||+|.+ .
T Consensus 97 ~~~~l~~l~--~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g--~ 172 (742)
T TIGR03817 97 QLRAVRELT--LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG--V 172 (742)
T ss_pred HHHHHHHhc--cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC--c
Confidence 999999987 236777666666554332 245689999999998754332111 1278999999999999864 3
Q ss_pred chHHHHHHHH-------hCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCC---------
Q psy11867 264 HQDFSIRIQK-------RLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKN--------- 327 (399)
Q Consensus 264 ~~~~~~~i~~-------~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~--------- 327 (399)
|...+..+++ ..+.++|+++||||+++... ++..++..|..+ +.... ......+.+.+...
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC-CCcCceEEEEecCCccccccccc
Confidence 4444433333 34567899999999998855 567777777554 22222 22222333332221
Q ss_pred -------hhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC--------CCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 328 -------IDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--------GLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 328 -------~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
...+...+..++.. ..++||||+|++.|+.++..|+.. +.++..+||++++++|..++++|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 12455666666654 469999999999999999988763 5689999999999999999999999
Q ss_pred CCCcccC
Q psy11867 393 GEFKIYS 399 (399)
Q Consensus 393 G~~~ILV 399 (399)
|+++|||
T Consensus 328 G~i~vLV 334 (742)
T TIGR03817 328 GELLGVA 334 (742)
T ss_pred CCceEEE
Confidence 9999986
No 35
>KOG0344|consensus
Probab=100.00 E-value=3.8e-41 Score=320.67 Aligned_cols=312 Identities=25% Similarity=0.355 Sum_probs=261.2
Q ss_pred ccccccceeeccCCCCCCcccccccc----CCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCcee
Q psy11867 82 IESKQELEIQRKDPHSPLYSVKTFEA----LHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTA 157 (399)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~ 157 (399)
.+..+.+.+.+.+.+.|+. +|.+ ...++.+++++...||..|+|+|.+|+|.++. ++|+++|||||||||+
T Consensus 114 ~Rk~~k~~v~G~~~~~~l~---~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~--~r~~lAcapTGsgKtl 188 (593)
T KOG0344|consen 114 IRKSNKINVDGFHLPPPLL---SFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLE--KRDVLACAPTGSGKTL 188 (593)
T ss_pred chhcceeeccCCCCCCccc---cccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhc--ccceEEeccCCCcchh
Confidence 4445567777777776654 4554 56899999999999999999999999999999 6999999999999999
Q ss_pred hhHHHHHHhhCCC-----CCCCeEEEEeCcHHHHHHHHHHHHHHh--ccCCCcEEEEEEcC-chhhhh---hccCCcEEE
Q psy11867 158 AFTLTMLSRVNPS-----IQEPQVLCLAPTYELAIQIGEVVAKMG--KHITDLSVRYAVRG-ENLERN---KKITEQIII 226 (399)
Q Consensus 158 ~~~l~il~~l~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~---~~~~~~IlV 226 (399)
+|.+|++.++... ..+.+++|+.||++||.|+++++.++. ... .+........ ....+. ....++|+|
T Consensus 189 af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili 267 (593)
T KOG0344|consen 189 AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILI 267 (593)
T ss_pred hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHh
Confidence 9999999998543 356799999999999999999999987 322 1221111111 001111 123457999
Q ss_pred eCchhHHHhhhcc-ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChhHHHHHHhhCCCCe
Q psy11867 227 GTPGKVLDWGLKY-RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKEVMEFAQDMVPNPL 304 (399)
Q Consensus 227 ~Tp~~l~~~~~~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~v~~~~~~~~~~p~ 304 (399)
+||.++..++... ..+++..+.++|+||||++++..+|..+...|...+. +...+-+||||++.+++++++..+.+++
T Consensus 268 ~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~ 347 (593)
T KOG0344|consen 268 STPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK 347 (593)
T ss_pred cCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce
Confidence 9999998885432 2368999999999999999975478888888877664 5667779999999999999999999999
Q ss_pred EEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHH-HHCCCeEEEEcCCCCHHHH
Q psy11867 305 IIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKM-SKEGLNVGLLSGELTVEQR 383 (399)
Q Consensus 305 ~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L-~~~g~~v~~lhg~~~~~~R 383 (399)
.+.++..+.....+.|..++|.+...|+.++++++......+++||+.+.+.|..|+..| .-.++++.++||+.++.+|
T Consensus 348 ~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 348 RVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred eEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 999999888899999999999999999999999999999999999999999999999999 6678999999999999999
Q ss_pred HHHHHHHhcCCCcccC
Q psy11867 384 LSILDRFREGEFKIYS 399 (399)
Q Consensus 384 ~~v~~~F~~G~~~ILV 399 (399)
+.++++||.|+++||+
T Consensus 428 de~~~~FR~g~IwvLi 443 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLI 443 (593)
T ss_pred HHHHHHHhccCeeEEE
Confidence 9999999999999985
No 36
>KOG0350|consensus
Probab=100.00 E-value=7.2e-40 Score=305.31 Aligned_cols=295 Identities=20% Similarity=0.339 Sum_probs=240.3
Q ss_pred ccccccCCCCHHH----------HHHHHHcCCCCChHHHHHHhhhhhcC-------CCCcEEEEccCCCCceehhHHHHH
Q psy11867 102 VKTFEALHLKPEL----------LKGVYEMGFYAPSKIQETALPTLLAD-------PPHNMIAQSQSGTGKTAAFTLTML 164 (399)
Q Consensus 102 ~~~f~~~~l~~~l----------~~~l~~~g~~~p~~iQ~~ai~~ll~~-------~g~~vi~~a~TGsGKT~~~~l~il 164 (399)
...|+.++++..+ .+++.++++....|+|..++|.++.. .++|+++.||||||||++|.+||+
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3445666655444 44589999999999999999999653 279999999999999999999999
Q ss_pred HhhCCC-CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----cc----CCcEEEeCchhHHHh
Q psy11867 165 SRVNPS-IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KI----TEQIIIGTPGKVLDW 235 (399)
Q Consensus 165 ~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~IlV~Tp~~l~~~ 235 (399)
+.+... .+.-|||||+||++|+.|+++.|+++.... ++.+....|..+++... .. ..+|+|+|||||.+|
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHh
Confidence 998665 345789999999999999999999999886 78888888887775543 12 238999999999999
Q ss_pred hhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC----------------------------------CCCCcE
Q psy11867 236 GLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL----------------------------------PSDCQI 281 (399)
Q Consensus 236 ~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l----------------------------------~~~~q~ 281 (399)
+.+.+.|++++++|+||||||||++. .|.+|+..++..+ .+..+.
T Consensus 285 l~~~k~f~Lk~LrfLVIDEADRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 285 LNNTKSFDLKHLRFLVIDEADRLLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred ccCCCCcchhhceEEEechHHHHHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 99899999999999999999999974 6777766554332 123358
Q ss_pred EEEEeeCChhHHHHHHhhCCCCeEEecc----cccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhH
Q psy11867 282 MLFSATYDKEVMEFAQDMVPNPLIIKLK----REEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTA 357 (399)
Q Consensus 282 l~~SAT~~~~v~~~~~~~~~~p~~i~~~----~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a 357 (399)
+.||||+..+-..+...-+..|-.+.+. .....+..+.+.++.++. .-|...++.++......++|||+++...+
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSA 442 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHH
Confidence 8999999888777777777777444333 334556677888887765 45777888888888889999999999999
Q ss_pred HHHHHHHH----HCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 358 AWLAEKMS----KEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 358 ~~l~~~L~----~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+++..|. ....++..+.|++....|...++.|+.|+++|||
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 99998886 3366788899999999999999999999999986
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-38 Score=328.62 Aligned_cols=285 Identities=21% Similarity=0.197 Sum_probs=208.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
.|++++|++.+++.+.+.||.+|+|+|.+|++..+.. |+|++++||||||||++|.+|++..+.. +.++|||+|++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~-g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~r 77 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLD-GKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLR 77 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhC-CCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChH
Confidence 4788999999999999999999999999999984433 7999999999999999999999998853 56799999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCC
Q psy11867 184 ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQG 263 (399)
Q Consensus 184 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~ 263 (399)
+||.|+++.++++... ++++....|+...........+|+|+||+++..++.+ ...++++++++|+||+|++.+. +
T Consensus 78 aLa~q~~~~~~~~~~~--g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~-~ 153 (737)
T PRK02362 78 ALASEKFEEFERFEEL--GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSA-N 153 (737)
T ss_pred HHHHHHHHHHHHhhcC--CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCC-c
Confidence 9999999999987542 6777777777654443345678999999999887654 3456889999999999999763 4
Q ss_pred chHHHHHHH---HhCCCCCcEEEEEeeCChhHHHHHHhhCC-------CCeEEe--cccccccccceeEEEEEeCChhhH
Q psy11867 264 HQDFSIRIQ---KRLPSDCQIMLFSATYDKEVMEFAQDMVP-------NPLIIK--LKREEESLDNIKQHYVMCKNIDEK 331 (399)
Q Consensus 264 ~~~~~~~i~---~~l~~~~q~l~~SAT~~~~v~~~~~~~~~-------~p~~i~--~~~~~~~~~~i~~~~~~~~~~~~k 331 (399)
+...+..++ +.+++..|++++|||+++. .+++...-. .|+.+. +...........+...........
T Consensus 154 rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (737)
T PRK02362 154 RGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDT 232 (737)
T ss_pred chHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHH
Confidence 555554443 3345789999999999863 233322211 121111 110000000001111111121233
Q ss_pred HHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC------------------------------------CCeEEEEc
Q psy11867 332 FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE------------------------------------GLNVGLLS 375 (399)
Q Consensus 332 ~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~------------------------------------g~~v~~lh 375 (399)
...+.+.+. ..+++||||++++.|+.++..|... ...++.+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 444444443 4579999999999999999888643 13689999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 376 GELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 376 g~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
|+|++.+|..+++.|++|.++|||
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLv 334 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVIS 334 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEE
Confidence 999999999999999999999986
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-37 Score=320.52 Aligned_cols=283 Identities=20% Similarity=0.191 Sum_probs=212.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhh-hhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPT-LLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~-ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
+|+++++++.+.+.+.++||..|+|+|.+|++. ++. |+|++++||||||||++|.+|++..+.. .+.++|||+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~--g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLE--GKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhC--CCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeCh
Confidence 478899999999999999999999999999997 455 7999999999999999999999998764 35689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
++|+.|+++.++.+.. + ++.+....|+..........++|+|+||+++..++. .+..++++++++|+||+|.+.+.
T Consensus 78 ~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~-~~~~~l~~l~lvViDE~H~l~~~- 153 (720)
T PRK00254 78 KALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLR-HGSSWIKDVKLVVADEIHLIGSY- 153 (720)
T ss_pred HHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHh-CCchhhhcCCEEEEcCcCccCCc-
Confidence 9999999999988643 2 677777777765444444567999999999988754 34456899999999999999753
Q ss_pred CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccc-cc-eeEEEEEeCCh------hhHHHH
Q psy11867 263 GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESL-DN-IKQHYVMCKNI------DEKFEA 334 (399)
Q Consensus 263 ~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~-~~-i~~~~~~~~~~------~~k~~~ 334 (399)
++...+..++..+..+.|++++|||+++. .+++.. +....... ....... .. ..+.+...... ......
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~w-l~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVGNA-EELAEW-LNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHH-hCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 56677788888888899999999999863 455543 32221111 0000000 00 11111111111 111223
Q ss_pred HHHHhccCCCCcEEEEecchHhHHHHHHHHHHC---------------------------------CCeEEEEcCCCCHH
Q psy11867 335 VSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE---------------------------------GLNVGLLSGELTVE 381 (399)
Q Consensus 335 l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lhg~~~~~ 381 (399)
+.+.+. ..+++||||++++.|+.++..|... ...|+.+||+|+++
T Consensus 231 ~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 231 VYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 344443 3468999999999999888666421 23599999999999
Q ss_pred HHHHHHHHHhcCCCcccC
Q psy11867 382 QRLSILDRFREGEFKIYS 399 (399)
Q Consensus 382 ~R~~v~~~F~~G~~~ILV 399 (399)
+|..+++.|++|.++|||
T Consensus 309 eR~~ve~~F~~G~i~VLv 326 (720)
T PRK00254 309 ERVLIEDAFREGLIKVIT 326 (720)
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 999999999999999986
No 39
>KOG0329|consensus
Probab=100.00 E-value=8e-38 Score=269.13 Aligned_cols=252 Identities=30% Similarity=0.514 Sum_probs=227.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.-|.++-|.|++++++...||.+|+.+|.+|||...- |.|++++|.+|-|||.+|+++-++++.+......+|++|.|
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail--gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL--GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh--cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 4588888999999999999999999999999999988 79999999999999999999999999988777789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
||||.|+.++..++.++++.+++...+||..+.+.. +..+||+|+||||++.+. +.+.+++++++++|+||||.|+
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALv-r~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALV-RNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHH-HhccCchhhcceeehhhHHHHH
Confidence 999999999999999999999999999998775543 557899999999999884 5688999999999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccc-cccceeEEEEEeCChhhHHHHHHHH
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEE-SLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
+.-.....+..|.+..|...|+++||||+++++...++.++.||..+.++.+.. ++.++.|+|+..+. .+|...+.++
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrkl~dL 277 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhhhhhh
Confidence 765667778889999999999999999999999999999999999999887654 57788899988765 6788899999
Q ss_pred hccCCCCcEEEEecchHhHH
Q psy11867 339 YGVVTIGQAMIFCHTRKTAA 358 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~ 358 (399)
+......+++||+.+.....
T Consensus 278 Ld~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 278 LDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred hhhhhhcceeEeeehhhhhh
Confidence 99998999999999977643
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-35 Score=295.12 Aligned_cols=261 Identities=16% Similarity=0.234 Sum_probs=193.0
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.+||..|+|+|.++++.+++ |+|+++++|||||||++|++|++.. +..+|||+||++|+.|+.+.++.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~--g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~--- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL--GRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS--- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc---
Confidence 37999999999999999999 6999999999999999999999852 346999999999999999988865
Q ss_pred CCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEechhhHhhcC-CchHHHHH
Q psy11867 200 ITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDEADVMIATQ-GHQDFSIR 270 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDEah~l~~~~-~~~~~~~~ 270 (399)
++......++..... ......+|+++||+++.........+ ...+++++||||||++.+.+ .|......
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 344455555443221 12345789999999985432111222 56789999999999997531 24444333
Q ss_pred ---HHHhCCCCCcEEEEEeeCChhHHHHHHhhC--CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhc-cCCC
Q psy11867 271 ---IQKRLPSDCQIMLFSATYDKEVMEFAQDMV--PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG-VVTI 344 (399)
Q Consensus 271 ---i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~~~~ 344 (399)
+...+ ++.+++++|||.++.+...+...+ .+|..+..... ..++. +.......+....+..++. ....
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLY--YEVRRKTPKILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcE--EEEEeCCccHHHHHHHHHHHhcCC
Confidence 33333 578999999999988776555543 45555433221 22332 2222222245555666665 3444
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLV 281 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVV 281 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999999999999999999999999999999999999999986
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.2e-35 Score=296.76 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=196.5
Q ss_pred cCCCCChHHHHHHhhhhhcCCCC-cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEE-EeCcHHHHHHHHHHHHHHhc
Q psy11867 121 MGFYAPSKIQETALPTLLADPPH-NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLC-LAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~-~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li-l~Pt~~La~Q~~~~~~~~~~ 198 (399)
.||. |||||.+++|.++. |+ ++++++|||||||.+|.++++.. ......++.|| ++|||+||.|+++.++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~--G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVA--GQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHc--CCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 5887 99999999999998 56 68888999999999776555532 23334566665 66999999999999999988
Q ss_pred cCC----------------------CcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhc--------cccc---
Q psy11867 199 HIT----------------------DLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLK--------YRFF--- 242 (399)
Q Consensus 199 ~~~----------------------~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~--------~~~~--- 242 (399)
.++ .+++..++||.....+. ..+++|||+|++.+.+-... ...+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhh
Confidence 653 37788889998776554 45679999996544332110 0001
Q ss_pred cCCceeEEEEechhhHhhcCCchHHHHHHHHhC--CCC---CcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccc
Q psy11867 243 DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL--PSD---CQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDN 317 (399)
Q Consensus 243 ~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l--~~~---~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~ 317 (399)
.+++++++|+|||| ++ .+|.+.+..|++.+ ++. +|+++||||++.++..+...++.++..+.+........+
T Consensus 168 ~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~k 244 (844)
T TIGR02621 168 FLGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKK 244 (844)
T ss_pred hhccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccc
Confidence 26889999999999 33 48999999999864 432 699999999999888888888878877766655555566
Q ss_pred eeEEEEEeCChhhHHHHHHHHh---ccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----HHHHH
Q psy11867 318 IKQHYVMCKNIDEKFEAVSNIY---GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRL-----SILDR 389 (399)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~ll---~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~-----~v~~~ 389 (399)
+.+++ .+.. +.|...+...+ .....+++||||||++.|+.+++.|.+.++ ..+||+|++.+|. .++++
T Consensus 245 i~q~v-~v~~-e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 245 IVKLV-PPSD-EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred eEEEE-ecCh-HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 66643 3332 33433322221 123457899999999999999999998886 8999999999999 88999
Q ss_pred Hhc
Q psy11867 390 FRE 392 (399)
Q Consensus 390 F~~ 392 (399)
|++
T Consensus 321 Fk~ 323 (844)
T TIGR02621 321 FLP 323 (844)
T ss_pred Hhc
Confidence 997
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.8e-35 Score=301.68 Aligned_cols=274 Identities=16% Similarity=0.177 Sum_probs=201.1
Q ss_pred CCCCHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 108 LHLKPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 108 ~~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
++....+...++. +||..|+|+|.++|+.++. |+|+++++|||+|||+||++|++.. .+.+|||+|+++|+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~--GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLm 513 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMS--GYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLI 513 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 4455666666665 7999999999999999998 7999999999999999999999853 34699999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---------ccCCcEEEeCchhHHHh--hhc-cccc-cCCceeEEEEe
Q psy11867 187 IQIGEVVAKMGKHITDLSVRYAVRGENLERNK---------KITEQIIIGTPGKVLDW--GLK-YRFF-DLSKIKVFVLD 253 (399)
Q Consensus 187 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~IlV~Tp~~l~~~--~~~-~~~~-~~~~~~~lViD 253 (399)
.++...+... ++......++....... ....+|+|+||++|... +.. ...+ ....+.+||||
T Consensus 514 qDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 514 QDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 8666655543 56667777765543221 14678999999998631 111 1111 23458999999
Q ss_pred chhhHhhcC-CchHHHHH--HHHhCCCCCcEEEEEeeCChhHHHHHHhhC--CCCeEEecccccccccceeEEEEEeCCh
Q psy11867 254 EADVMIATQ-GHQDFSIR--IQKRLPSDCQIMLFSATYDKEVMEFAQDMV--PNPLIIKLKREEESLDNIKQHYVMCKNI 328 (399)
Q Consensus 254 Eah~l~~~~-~~~~~~~~--i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~ 328 (399)
|||++.+.+ .|...+.. ++....+..++++||||.+..+...+...+ .++..+... ....++ +|.+....
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL--~y~Vv~k~ 663 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL--WYSVVPKT 663 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce--EEEEeccc
Confidence 999998642 25554443 233344578999999999998887665544 344433221 122333 34334333
Q ss_pred hhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
......+..++... ...++||||++++.|+.++..|...|+.+..|||+|++.+|..++++|+.|+++|||
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 33345566666543 346799999999999999999999999999999999999999999999999999987
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.6e-35 Score=310.97 Aligned_cols=262 Identities=21% Similarity=0.225 Sum_probs=204.1
Q ss_pred HHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 116 KGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 116 ~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
+.+.+ .|+ .|+++|..++|.++. |+|++++||||||||+ |.++++..+.. .+.+++||+||++||.|+++.++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~--g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLL--GESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHC--CCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHH
Confidence 33434 466 899999999999998 7999999999999995 55666555533 46789999999999999999999
Q ss_pred HHhccCCCcEEEEEEcCchh-----hhh----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc----
Q psy11867 195 KMGKHITDLSVRYAVRGENL-----ERN----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT---- 261 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~---- 261 (399)
.++... ++.+....++... ... ....++|+|+||++|.+++. .+...+++++|+||||+|++.
T Consensus 145 ~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccch
Confidence 998875 5666666655432 111 13468999999999998753 455667999999999999852
Q ss_pred ------CCch-HHHHHHHHhCCC------------------------CCcEEEEEeeCChh-HHHHHHhhCCCCeEEecc
Q psy11867 262 ------QGHQ-DFSIRIQKRLPS------------------------DCQIMLFSATYDKE-VMEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 262 ------~~~~-~~~~~i~~~l~~------------------------~~q~l~~SAT~~~~-v~~~~~~~~~~p~~i~~~ 309 (399)
.||. +.+..++..++. ..|+++||||+++. +.. .++.++..+.+.
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 2564 566666666654 68999999999864 332 234566667777
Q ss_pred cccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHh---HHHHHHHHHHCCCeEEEEcCCCCHHHHHHH
Q psy11867 310 REEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKT---AAWLAEKMSKEGLNVGLLSGELTVEQRLSI 386 (399)
Q Consensus 310 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v 386 (399)
.......++.+.|+.+. ++...+..+++... .++||||++++. |+++++.|...|+++..+||+| + ..
T Consensus 298 ~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~--~~ 368 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E--RK 368 (1176)
T ss_pred CcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H--HH
Confidence 76667789999998775 46667777776554 589999999888 9999999999999999999999 2 34
Q ss_pred HHHHhcCCCcccC
Q psy11867 387 LDRFREGEFKIYS 399 (399)
Q Consensus 387 ~~~F~~G~~~ILV 399 (399)
+++|++|+++|||
T Consensus 369 l~~F~~G~~~VLV 381 (1176)
T PRK09401 369 FEKFEEGEVDVLV 381 (1176)
T ss_pred HHHHHCCCCCEEE
Confidence 5999999999997
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.2e-35 Score=301.94 Aligned_cols=283 Identities=19% Similarity=0.187 Sum_probs=203.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
.|++++|++.+++.+...||. ++++|.++++.+.. ++|++++||||||||++|.++++..+.. +.++||++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~--~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~r 75 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRK--GENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLR 75 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhc--CCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechH
Confidence 477889999999999999886 99999999999877 7999999999999999999999988764 35799999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCC
Q psy11867 184 ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQG 263 (399)
Q Consensus 184 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~ 263 (399)
+||.|+++.++++.. . +..+....|+...........+|+|+||+++..++.+. ...+++++++|+||||++.+. +
T Consensus 76 aLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~-~ 151 (674)
T PRK01172 76 SLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDE-D 151 (674)
T ss_pred HHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCC-C
Confidence 999999999998643 2 56777777765543333456799999999998876543 345889999999999998753 4
Q ss_pred chHHHHHH---HHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccccccc-ceeE-EEEEeCChhhHHHHHHHH
Q psy11867 264 HQDFSIRI---QKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLD-NIKQ-HYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 264 ~~~~~~~i---~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~-~i~~-~~~~~~~~~~k~~~l~~l 338 (399)
+...+..+ .+.++++.|++++|||+++. .++...+- .+. +.......... ++.. ....+.........+..+
T Consensus 152 rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~-~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 152 RGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLN-ASL-IKSNFRPVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhC-CCc-cCCCCCCCCeEEEEEecCeeeecccccccccHHHH
Confidence 44444444 34456789999999999763 44544322 111 11000000000 0000 000111111111112222
Q ss_pred hcc--CCCCcEEEEecchHhHHHHHHHHHHC-------------------------CCeEEEEcCCCCHHHHHHHHHHHh
Q psy11867 339 YGV--VTIGQAMIFCHTRKTAAWLAEKMSKE-------------------------GLNVGLLSGELTVEQRLSILDRFR 391 (399)
Q Consensus 339 l~~--~~~~k~IIF~~s~~~a~~l~~~L~~~-------------------------g~~v~~lhg~~~~~~R~~v~~~F~ 391 (399)
+.. ...+++||||++++.|+.++..|... ...++.+||+|++++|..+++.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 222 23579999999999999999888653 135889999999999999999999
Q ss_pred cCCCcccC
Q psy11867 392 EGEFKIYS 399 (399)
Q Consensus 392 ~G~~~ILV 399 (399)
+|.++|||
T Consensus 309 ~g~i~VLv 316 (674)
T PRK01172 309 NRYIKVIV 316 (674)
T ss_pred cCCCeEEE
Confidence 99999986
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.2e-35 Score=306.27 Aligned_cols=281 Identities=20% Similarity=0.232 Sum_probs=196.4
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC------CCCCeEEEEeCcH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS------IQEPQVLCLAPTY 183 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~------~~~~~~lil~Pt~ 183 (399)
+++.+.+.+. .+|..|||+|.+|+|.+++ |+|++++||||||||++|++|+++.+... ..+.++|||+||+
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~--g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHE--GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHc--CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 5566666554 4899999999999999998 79999999999999999999999887531 2457899999999
Q ss_pred HHHHHHHHHHHHH-----------hccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccc-cCCcee
Q psy11867 184 ELAIQIGEVVAKM-----------GKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFF-DLSKIK 248 (399)
Q Consensus 184 ~La~Q~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~ 248 (399)
+|+.|+++.+... +..++++.+....|+...... ....++|+|+||++|..++...+.. .+++++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 9999998765532 233345677777777654332 2457899999999998775433221 478999
Q ss_pred EEEEechhhHhhcCCchH----HHHHHHHhCCCCCcEEEEEeeCChh--HHHHHHhhC----CCCeEEecccccccccce
Q psy11867 249 VFVLDEADVMIATQGHQD----FSIRIQKRLPSDCQIMLFSATYDKE--VMEFAQDMV----PNPLIIKLKREEESLDNI 318 (399)
Q Consensus 249 ~lViDEah~l~~~~~~~~----~~~~i~~~l~~~~q~l~~SAT~~~~--v~~~~~~~~----~~p~~i~~~~~~~~~~~i 318 (399)
+||+||+|.+.+. .... .+.++....+...|++++|||+++. +..+..... ..+..+.-... ....
T Consensus 175 ~VVIDE~H~l~~~-~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~---~k~~ 250 (876)
T PRK13767 175 WVIVDEIHSLAEN-KRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF---VKPF 250 (876)
T ss_pred EEEEechhhhccC-ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC---Cccc
Confidence 9999999999854 2222 2334444445688999999999862 333322211 11222211100 0111
Q ss_pred eEEEE-------EeCC---hhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC------CCeEEEEcCCCCHHH
Q psy11867 319 KQHYV-------MCKN---IDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE------GLNVGLLSGELTVEQ 382 (399)
Q Consensus 319 ~~~~~-------~~~~---~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~~ 382 (399)
..... .... .......+..++.. .+++||||||++.|+.++..|.+. +..+..+||+|++++
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 00000 0111 01223344444433 468999999999999999999873 468999999999999
Q ss_pred HHHHHHHHhcCCCcccC
Q psy11867 383 RLSILDRFREGEFKIYS 399 (399)
Q Consensus 383 R~~v~~~F~~G~~~ILV 399 (399)
|..+++.|++|+++|||
T Consensus 329 R~~ve~~fk~G~i~vLV 345 (876)
T PRK13767 329 RLEVEEKLKRGELKVVV 345 (876)
T ss_pred HHHHHHHHHcCCCeEEE
Confidence 99999999999999986
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.6e-34 Score=287.08 Aligned_cols=279 Identities=21% Similarity=0.234 Sum_probs=213.4
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-----CCCCeEEEEeCcHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-----IQEPQVLCLAPTYE 184 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~~lil~Pt~~ 184 (399)
|++.+++.++.. |..||+.|.+|||.+.+ |+|+++.||||||||+|+++|++..+... ..+..||||+|.++
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~--G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHS--GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhC--CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 678999999888 99999999999999998 79999999999999999999999988655 23468999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCchhhh---hhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEechhhHhh
Q psy11867 185 LAIQIGEVVAKMGKHITDLSVRYAVRGENLER---NKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 185 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDEah~l~~ 260 (399)
|..++.+.++.++..+ ++.+..-.|...... ..+..+||+|+||+.|.-++...+.. .+++++++|+||.|.+.+
T Consensus 85 Ln~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 9999999999999876 777766666654432 22667899999999998776543322 489999999999999986
Q ss_pred cCCchHH---HHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCC--CeEEecccccccccceeEEEEEeCCh-------
Q psy11867 261 TQGHQDF---SIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPN--PLIIKLKREEESLDNIKQHYVMCKNI------- 328 (399)
Q Consensus 261 ~~~~~~~---~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~~~~~------- 328 (399)
....... +.++....+ +.|.+++|||..+. ...++..... +..|...... .............
T Consensus 164 sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 164 SKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred cccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccch
Confidence 5322222 234444444 89999999999843 4444444433 3333222211 1122222222111
Q ss_pred -hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 -DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEG-LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 -~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..-+..+.++++.+. .+|||+|||..|+.++..|.+.+ ..+..+||.++.++|..+.++|++|+++++|
T Consensus 239 ~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV 309 (814)
T COG1201 239 WAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVV 309 (814)
T ss_pred hHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEE
Confidence 335566667776654 89999999999999999999986 8999999999999999999999999999876
No 47
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-33 Score=287.08 Aligned_cols=268 Identities=14% Similarity=0.217 Sum_probs=196.8
Q ss_pred CHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 111 KPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 111 ~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
.+...+.|++ +||..|+|+|.++++.+++ |+|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~--g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLS--GRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHH
Confidence 3344444544 6999999999999999998 7999999999999999999999853 34699999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
.+.++.++ +......++..... ......+++++||+++...... ..+...+++++||||||++.+.+
T Consensus 82 v~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 82 VDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcccccccc
Confidence 99888763 44444444432221 1134568999999998742111 22334578999999999987531
Q ss_pred -CchHHHH---HHHHhCCCCCcEEEEEeeCChhHHHHHHhh--CCCCeEEecccccccccceeEEEEEeCChhhHHHHHH
Q psy11867 263 -GHQDFSI---RIQKRLPSDCQIMLFSATYDKEVMEFAQDM--VPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVS 336 (399)
Q Consensus 263 -~~~~~~~---~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~--~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (399)
.|...+. .+...+ ++.+++++|||.+..+...+... +.+|....... ...++. |..+.. ..+...+.
T Consensus 156 ~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl~--~~v~~~-~~~~~~l~ 228 (607)
T PRK11057 156 HDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIR--YTLVEK-FKPLDQLM 228 (607)
T ss_pred CcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcce--eeeeec-cchHHHHH
Confidence 2443333 333333 57899999999998876544433 34555433221 123332 222222 33456677
Q ss_pred HHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 337 NIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 337 ~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++......++||||+++++|+.++..|...|+.+..+||+|++++|..+++.|+.|+++|||
T Consensus 229 ~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLV 291 (607)
T PRK11057 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVV 291 (607)
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 777777778999999999999999999999999999999999999999999999999999986
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.3e-33 Score=296.29 Aligned_cols=265 Identities=16% Similarity=0.155 Sum_probs=205.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHH
Q psy11867 113 ELLKGVYEMGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 113 ~l~~~l~~~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 188 (399)
...+...+++| .||++|.+||+.++++ .++|++++|+||+|||.+|+.+++..+. .+.+++||+||++||.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHH
Confidence 33444556777 7999999999999884 2489999999999999999988877664 45789999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCchhhhhh-------ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc
Q psy11867 189 IGEVVAKMGKHITDLSVRYAVRGENLERNK-------KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~ 261 (399)
+++.+++.+..+ .+++....++....... .+.++|+|+||+.+. ..+.+++++++||||+|++.
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVIDEahrfG-- 735 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVDEEHRFG-- 735 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEechhhcc--
Confidence 999999876655 56666666665432221 246899999997431 34567899999999999973
Q ss_pred CCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc
Q psy11867 262 QGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV 341 (399)
Q Consensus 262 ~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~ 341 (399)
+.. ...++.++.++|+++||||..+....++...+.++..+....... ..+++.+..+.....+...+.++.+
T Consensus 736 --~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~il~el~r- 808 (1147)
T PRK10689 736 --VRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREAILREILR- 808 (1147)
T ss_pred --hhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHHHHHHHhc-
Confidence 221 234566788999999999988888888888888998887654332 2355555444333334444445543
Q ss_pred CCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 342 VTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 342 ~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++++||||+++.++.+++.|.+. +.++..+||+|++.+|.+++++|++|+++|||
T Consensus 809 --~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLV 866 (1147)
T PRK10689 809 --GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 (1147)
T ss_pred --CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999987 78999999999999999999999999999997
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.4e-33 Score=284.51 Aligned_cols=262 Identities=14% Similarity=0.189 Sum_probs=197.2
Q ss_pred HHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 117 GVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 117 ~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
.|++ +||..|+|+|.++++.+++ |+|+++++|||+|||++|++|++.. ...++||+|+++|+.|+.+.++.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~--g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~ 75 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLD--GRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA 75 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 3444 7999999999999999998 6999999999999999999999842 34589999999999999999988
Q ss_pred HhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-CchHH
Q psy11867 196 MGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ-GHQDF 267 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~-~~~~~ 267 (399)
+ ++.+....++...... ..+..+|+++||+++...... ..+...++++|||||||++.+.+ .|...
T Consensus 76 ~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 76 A-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 6 3445555555433221 135678999999998643221 23456789999999999987531 24444
Q ss_pred HHH---HHHhCCCCCcEEEEEeeCChhHHHHHHhhCC--CCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccC
Q psy11867 268 SIR---IQKRLPSDCQIMLFSATYDKEVMEFAQDMVP--NPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV 342 (399)
Q Consensus 268 ~~~---i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~--~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 342 (399)
+.. +...++ ..+++++|||.+..+...+...+. ++..+... ....++. |..... ..+...+..++...
T Consensus 150 y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~--~~v~~~-~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 150 YQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLR--FSVVKK-NNKQKFLLDYLKKH 222 (591)
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcE--EEEEeC-CCHHHHHHHHHHhc
Confidence 333 334444 455999999999988776666553 44433211 1122332 222222 34666777777776
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...++||||++++.|+.+++.|...|+.+..+||+|+.++|..+++.|++|+++|||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 678999999999999999999999999999999999999999999999999999986
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-32 Score=286.80 Aligned_cols=268 Identities=18% Similarity=0.191 Sum_probs=202.0
Q ss_pred CCHHHHHHHHH-cCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 110 LKPELLKGVYE-MGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 110 l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
....+.+.+.+ ++| .||++|.+||+.++++ .++|++++|+||||||.+|++|++..+.. +.+++||+||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHH
Confidence 34555666655 577 5999999999999874 24799999999999999999999988764 468999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 185 LAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 185 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||.|+++.++++...+ ++++....++..... ...+.++||||||. ++. +.+.+++++++||||+|+
T Consensus 512 LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~-----~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 512 LAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ-----KDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred HHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh-----CCCCcccCCEEEeecccc
Confidence 9999999999987765 566666666543211 11346899999994 322 345688999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
+.. .....++.++.++|+++||||..+....+......++..+....... ..+..++..... ......+..
T Consensus 585 fgv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~-~~i~~~i~~ 655 (926)
T TIGR00580 585 FGV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP-ELVREAIRR 655 (926)
T ss_pred cch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH-HHHHHHHHH
Confidence 632 12234556677899999999987776666666667877776554332 234444443322 111222222
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
-+. ..++++|||++++.++.+++.|.+. +.++..+||+|++.+|..++++|++|+++|||
T Consensus 656 el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILV 717 (926)
T TIGR00580 656 ELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLV 717 (926)
T ss_pred HHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 222 3479999999999999999999885 78999999999999999999999999999997
No 51
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.3e-32 Score=294.25 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=199.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHH
Q psy11867 113 ELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEV 192 (399)
Q Consensus 113 ~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~ 192 (399)
.+.+.+.+.....|+++|..++|.++. |+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~--G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLR--GDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhC--CCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHH
Confidence 344555554555899999999999998 7999999999999996 66777665543 367899999999999999999
Q ss_pred HHHHhccCCCcEE---EEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc-
Q psy11867 193 VAKMGKHITDLSV---RYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT- 261 (399)
Q Consensus 193 ~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~- 261 (399)
++.++... ++.. ....|+...... ..+.++|+|+||++|.+++... .. +++++|+||||+|++.
T Consensus 141 l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 141 ISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcc
Confidence 99998764 3332 234566544321 1345899999999998875432 12 8999999999999872
Q ss_pred ---------CCchHH-HHHHH----------------------HhCCCCCc--EEEEEee-CChhHHHHHHhhCCCCeEE
Q psy11867 262 ---------QGHQDF-SIRIQ----------------------KRLPSDCQ--IMLFSAT-YDKEVMEFAQDMVPNPLII 306 (399)
Q Consensus 262 ---------~~~~~~-~~~i~----------------------~~l~~~~q--~l~~SAT-~~~~v~~~~~~~~~~p~~i 306 (399)
.||.+. +..++ +.++..+| +++|||| .|..+.. .+++++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 256543 33332 23445555 5679999 5655432 345566677
Q ss_pred ecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecch---HhHHHHHHHHHHCCCeEEEEcCCCCHHHH
Q psy11867 307 KLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTR---KTAAWLAEKMSKEGLNVGLLSGELTVEQR 383 (399)
Q Consensus 307 ~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~---~~a~~l~~~L~~~g~~v~~lhg~~~~~~R 383 (399)
.++.......++.+.|+.+.. +...+..+++.. ..++||||+++ +.|+.|++.|.+.|+++..+||+|++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK--- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH---
Confidence 777777778899999886643 234566666554 36899999999 99999999999999999999999973
Q ss_pred HHHHHHHhcCCCcccC
Q psy11867 384 LSILDRFREGEFKIYS 399 (399)
Q Consensus 384 ~~v~~~F~~G~~~ILV 399 (399)
.+++.|++|+++|||
T Consensus 366 -~~l~~Fr~G~~~vLV 380 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLI 380 (1171)
T ss_pred -HHHHHHHcCCCCEEE
Confidence 689999999999997
No 52
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-32 Score=299.78 Aligned_cols=269 Identities=18% Similarity=0.172 Sum_probs=205.9
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 112 PELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 112 ~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
..+.+.+++ .|| .|+++|..++|.+++ |+|++++||||||||++++++++.... .+.++|||+||++|+.|++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~--G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILR--GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHH
Confidence 445556665 799 699999999999999 799999999999999976666654432 4568999999999999999
Q ss_pred HHHHHHhccCC-CcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc-
Q psy11867 191 EVVAKMGKHIT-DLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT- 261 (399)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~- 261 (399)
+.++.++..+. ++.+....|+...... ..+.++|+|+||++|.+++... ...+++++|+||||+|+..
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceeccccc
Confidence 99999987652 3556666777654332 1345899999999998865431 1267999999999999751
Q ss_pred ---------CCchHHHHH----HHH----------------------hCCCCCc-EEEEEeeCChhHHHHHHhhCCCCeE
Q psy11867 262 ---------QGHQDFSIR----IQK----------------------RLPSDCQ-IMLFSATYDKEVMEFAQDMVPNPLI 305 (399)
Q Consensus 262 ---------~~~~~~~~~----i~~----------------------~l~~~~q-~l~~SAT~~~~v~~~~~~~~~~p~~ 305 (399)
.||...+.. +++ .+++..| ++++|||++... .....++++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 266665543 321 2344556 678999998631 11233467788
Q ss_pred EecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHh---HHHHHHHHHHCCCeEEEEcCCCCHHH
Q psy11867 306 IKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKT---AAWLAEKMSKEGLNVGLLSGELTVEQ 382 (399)
Q Consensus 306 i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~~ 382 (399)
+.++.......++.+.|+.+.. ..+ ..+..+++.. ..++||||++++. |+.+++.|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~----- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK----- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----
Confidence 8888777788899999987653 334 5677777665 4689999999875 589999999999999999995
Q ss_pred HHHHHHHHhcCCCcccC
Q psy11867 383 RLSILDRFREGEFKIYS 399 (399)
Q Consensus 383 R~~v~~~F~~G~~~ILV 399 (399)
|..++++|++|+++|||
T Consensus 367 R~~~l~~F~~G~~~VLV 383 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLI 383 (1638)
T ss_pred HHHHHHHHHcCCCCEEE
Confidence 89999999999999997
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4e-31 Score=272.44 Aligned_cols=267 Identities=21% Similarity=0.259 Sum_probs=192.8
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHhhhhhcCC----CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 112 PELLKGVYE-MGFYAPSKIQETALPTLLADP----PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 112 ~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~----g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
..+.+.+.+ ++| .||++|.+|++.+.++. ..|++++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 445555544 566 79999999999998751 3589999999999999999999988753 56899999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 187 IQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 187 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
.|+++.+++++..+ ++++....|+...... ..+.++|+||||+.+.+ ...+++++++|+||+|++.
T Consensus 324 ~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 324 EQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhh
Confidence 99999999998776 6888888888764221 13468999999987643 3457899999999999974
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHh
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 339 (399)
.. .. ..+.......++++||||..+....+......+...+.... .....+...+......+..+..+...+
T Consensus 397 ~~-----qr-~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~~~~~~~~~i~~~~ 468 (681)
T PRK10917 397 VE-----QR-LALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVIPDSRRDEVYERIREEI 468 (681)
T ss_pred HH-----HH-HHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEeCcccHHHHHHHHHHHH
Confidence 32 11 22233355789999999976654444332222333332211 112335555544333233334444333
Q ss_pred ccCCCCcEEEEecch--------HhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 340 GVVTIGQAMIFCHTR--------KTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 340 ~~~~~~k~IIF~~s~--------~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
....+++|||+.. ..++.+++.|.+. ++++..+||+|++.+|..++++|++|+++|||
T Consensus 469 --~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 469 --AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred --HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 2346999999954 4567788888765 57899999999999999999999999999997
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=252.44 Aligned_cols=284 Identities=21% Similarity=0.252 Sum_probs=230.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
..+++.+++.+.+-|+..|+..+.|+|..|+..-|-. |.|.++.++|+||||+..-++-+..+.. .+.+.|+|+|..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLe-G~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfLvPLV 271 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLE-GENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFLVPLV 271 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhcccc-CCceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEEehhH
Confidence 4578899999999999999999999999999987766 9999999999999999999988888765 355699999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechh
Q psy11867 184 ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 184 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah 256 (399)
+||+|-|+.|+.-...+ ++.+..-+|-..+... .....+|||+|.+-+-.++ +.+ -++.++..+||||+|
T Consensus 272 ALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lL-Rtg-~~lgdiGtVVIDEiH 348 (830)
T COG1202 272 ALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLL-RTG-KDLGDIGTVVIDEIH 348 (830)
T ss_pred HhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHH-HcC-CcccccceEEeeeee
Confidence 99999999999877766 6777666665444222 1345689999999876554 433 578999999999999
Q ss_pred hHhhc-CC-chHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHH
Q psy11867 257 VMIAT-QG-HQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEA 334 (399)
Q Consensus 257 ~l~~~-~~-~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (399)
.+-+. .| ..+-++.-++.+-+..|++.+|||..+. ..+++.+-..++... .-+-.+..+.++|.+..+|.+.
T Consensus 349 tL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~eK~~i 422 (830)
T COG1202 349 TLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNESEKWDI 422 (830)
T ss_pred eccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCchHHHHH
Confidence 98753 22 2333444455666799999999999876 567777655554432 2334567788899988899888
Q ss_pred HHHHhccC--------CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 335 VSNIYGVV--------TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 335 l~~ll~~~--------~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+..+.+.. ..|+||||.+|++.|+.||..|...|+++..||+||+..+|..+...|.+|++.++|
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 88876542 347999999999999999999999999999999999999999999999999998876
No 55
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=4e-31 Score=234.57 Aligned_cols=197 Identities=47% Similarity=0.728 Sum_probs=172.6
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC--CCCCeEEEEeCc
Q psy11867 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS--IQEPQVLCLAPT 182 (399)
Q Consensus 105 f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~Pt 182 (399)
|+++++++.+.+.+.++|+..|+++|.++++.+++ |+|+++++|||+|||++|++|++..+... ..+++++|++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~--~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~ 78 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLS--GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC
Confidence 67889999999999999999999999999999998 79999999999999999999999998776 467899999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
++|+.|+.+.++.+.... ++.+....|+....... ...++|+|+||+++.+++.+. .+.+++++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhh
Confidence 999999999999987664 67777777776543322 346789999999998886544 4778899999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEE
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLII 306 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i 306 (399)
+ .++...+..+...++..+|++++|||+++.+..++..++.+|+.+
T Consensus 157 ~-~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 D-MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred c-cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 5 367888888888998899999999999999999999999998876
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=6e-31 Score=269.87 Aligned_cols=282 Identities=20% Similarity=0.222 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.+.+.+-+...|+.++.+-|+.++...+-+ ++|+++++|||||||+.+++.+++.+... +.+++||||+++||.+.
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccC-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 6677777777788888888888888777766 89999999999999999999999999874 56799999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc-CC-chHH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT-QG-HQDF 267 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~-~~-~~~~ 267 (399)
++.++++-.. ++++...+|+..........++|+|+||+++-....+. ..++..+++||+||+|.+.+. +| ....
T Consensus 93 ~~~~~~~~~~--GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~-~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 93 YEEFSRLEEL--GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKR-PSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHHhhhHHhc--CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcC-cchhhcccEEEEeeeeecCCcccCceehh
Confidence 9999955433 89999999998877777788899999999998876554 347889999999999999765 33 2233
Q ss_pred HHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecc--cccccccceeEEEEEeCChh------hHHHHHHHHh
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK--REEESLDNIKQHYVMCKNID------EKFEAVSNIY 339 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~--~~~~~~~~i~~~~~~~~~~~------~k~~~l~~ll 339 (399)
+..-...+...+|++++|||+|+. .+++...-.++..-... ....... ..+.+....... .....+...+
T Consensus 170 iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~-~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVP-YVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred HHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCc-cceEEEEecCccccccccchHHHHHHHH
Confidence 333334444558999999999964 45555444343311111 1111111 122222222111 1122333333
Q ss_pred ccC-CCCcEEEEecchHhHHHHHHHHHHC-------------------------------------CCeEEEEcCCCCHH
Q psy11867 340 GVV-TIGQAMIFCHTRKTAAWLAEKMSKE-------------------------------------GLNVGLLSGELTVE 381 (399)
Q Consensus 340 ~~~-~~~k~IIF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg~~~~~ 381 (399)
... ..+++||||+|++.+...|+.++.. -..++.+|+||+.+
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~ 327 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRE 327 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHH
Confidence 333 3479999999999999999998830 12478999999999
Q ss_pred HHHHHHHHHhcCCCcccC
Q psy11867 382 QRLSILDRFREGEFKIYS 399 (399)
Q Consensus 382 ~R~~v~~~F~~G~~~ILV 399 (399)
+|..+.+.|+.|+++|||
T Consensus 328 ~R~~vE~~Fr~g~ikVlv 345 (766)
T COG1204 328 DRQLVEDAFRKGKIKVLV 345 (766)
T ss_pred HHHHHHHHHhcCCceEEE
Confidence 999999999999999996
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=4.5e-30 Score=262.98 Aligned_cols=265 Identities=22% Similarity=0.255 Sum_probs=186.8
Q ss_pred HHHHHHHcCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 114 LLKGVYEMGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 114 l~~~l~~~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.+.+...+| .||++|.+|++.++++ .+.+.+++|+||||||++|++|++..+.. +.+++|++||++||.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 3445566788 7999999999999874 13578999999999999999999988764 56799999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
++.+++++..+ ++++....|+...... ..+..+|+|+||+.+.+ .+.+++++++|+||+|++...
T Consensus 301 ~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 301 YNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHH-
Confidence 99999998765 6888888888654321 13467999999997753 345789999999999997421
Q ss_pred CchHHHHHHHHhCC--CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhc
Q psy11867 263 GHQDFSIRIQKRLP--SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340 (399)
Q Consensus 263 ~~~~~~~~i~~~l~--~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 340 (399)
....+..... ..+++++||||..+....+......+...+.... .....+...+.... .+...+..+..
T Consensus 373 ----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~~r~~i~~~~~~~~---~~~~~~~~i~~ 443 (630)
T TIGR00643 373 ----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--PGRKPITTVLIKHD---EKDIVYEFIEE 443 (630)
T ss_pred ----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--CCCCceEEEEeCcc---hHHHHHHHHHH
Confidence 2222333332 2689999999975543333221111222221111 11123444333222 22222222222
Q ss_pred c-CCCCcEEEEecch--------HhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 341 V-VTIGQAMIFCHTR--------KTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 341 ~-~~~~k~IIF~~s~--------~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
. ....+++|||+.. +.++.+++.|... +++|..+||+|++.+|..++++|++|+.+|||
T Consensus 444 ~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 444 EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 2 2346899999876 4577788888764 78899999999999999999999999999997
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.5e-30 Score=279.33 Aligned_cols=250 Identities=18% Similarity=0.180 Sum_probs=174.8
Q ss_pred EEccCCCCceehhHHHHHHhhCCC----------CCCCeEEEEeCcHHHHHHHHHHHHHHh-----------ccCCCcEE
Q psy11867 147 AQSQSGTGKTAAFTLTMLSRVNPS----------IQEPQVLCLAPTYELAIQIGEVVAKMG-----------KHITDLSV 205 (399)
Q Consensus 147 ~~a~TGsGKT~~~~l~il~~l~~~----------~~~~~~lil~Pt~~La~Q~~~~~~~~~-----------~~~~~~~~ 205 (399)
++||||||||++|++|++..+... ..+.++|||+|+++|+.|+++.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999988532 235789999999999999999887522 12236778
Q ss_pred EEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-C--chHHHHHHHHhCCCCC
Q psy11867 206 RYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ-G--HQDFSIRIQKRLPSDC 279 (399)
Q Consensus 206 ~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~-~--~~~~~~~i~~~l~~~~ 279 (399)
....|+....... +..++|+|+||++|..++.+.....++++++|||||+|.|.+.. | +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8888887664432 45789999999999887654333468999999999999998642 2 2345566777777889
Q ss_pred cEEEEEeeCChhHHHHHHhhCC-CCeEEecccccccccceeEEEEEeCChh-------------------h-HHHHHHHH
Q psy11867 280 QIMLFSATYDKEVMEFAQDMVP-NPLIIKLKREEESLDNIKQHYVMCKNID-------------------E-KFEAVSNI 338 (399)
Q Consensus 280 q~l~~SAT~~~~v~~~~~~~~~-~p~~i~~~~~~~~~~~i~~~~~~~~~~~-------------------~-k~~~l~~l 338 (399)
|+|++|||+++. .++++.+.. .|+.+....... ...+. .++...... . .......+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r-~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMR-HPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCc-ccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 555544332 355543221111 11222 122111100 0 00011122
Q ss_pred hcc-CCCCcEEEEecchHhHHHHHHHHHHCC---------------------------------CeEEEEcCCCCHHHHH
Q psy11867 339 YGV-VTIGQAMIFCHTRKTAAWLAEKMSKEG---------------------------------LNVGLLSGELTVEQRL 384 (399)
Q Consensus 339 l~~-~~~~k~IIF~~s~~~a~~l~~~L~~~g---------------------------------~~v~~lhg~~~~~~R~ 384 (399)
+.. ....++||||||++.|+.++..|.+.. +.+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 234789999999999999999987641 1267899999999999
Q ss_pred HHHHHHhcCCCcccC
Q psy11867 385 SILDRFREGEFKIYS 399 (399)
Q Consensus 385 ~v~~~F~~G~~~ILV 399 (399)
.+++.|++|++++||
T Consensus 318 ~IE~~fK~G~LrvLV 332 (1490)
T PRK09751 318 ITEQALKSGELRCVV 332 (1490)
T ss_pred HHHHHHHhCCceEEE
Confidence 999999999999986
No 59
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=262.51 Aligned_cols=283 Identities=20% Similarity=0.221 Sum_probs=212.5
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
....+..++.+.|+..|+++|.+|+..+.+ |+|++++++||||||.+|++||++.+..... .++|+|.||++||+.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~--G~~vvVtTgTgSGKTe~FllPIld~~l~~~~-a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIRE--GRNVVVTTGTGSGKTESFLLPILDHLLRDPS-ARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHC--CCCEEEECCCCCchhHHHHHHHHHHHhhCcC-ccEEEEechhhhHhhH
Confidence 345568888899999999999999999999 7999999999999999999999999987643 4899999999999999
Q ss_pred HHHHHHHhccCC-CcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccc---cCCceeEEEEechhhHhhcC
Q psy11867 190 GEVVAKMGKHIT-DLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFF---DLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~---~~~~~~~lViDEah~l~~~~ 262 (399)
.+.++++...++ .+......|...-.+. ....++|+++||.+|..++...... .++++++||+||+|.+-.
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-- 209 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-- 209 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc--
Confidence 999999998876 4555566666554444 3778999999999998865554433 367899999999999854
Q ss_pred CchHHHHHHHHh-------CCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCC--------
Q psy11867 263 GHQDFSIRIQKR-------LPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKN-------- 327 (399)
Q Consensus 263 ~~~~~~~~i~~~-------l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~-------- 327 (399)
.+...+..++++ .+.+.|+|+.|||+.+. ..++..+........ ..........+..+...+.
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 344444433333 35688999999999876 445555555444433 2333344444444444430
Q ss_pred hhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHH----HHHHHCC----CeEEEEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 328 IDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLA----EKMSKEG----LNVGLLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 328 ~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~----~~L~~~g----~~v~~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
...+...+..+.... ..-++|+||.+++.++.++ ..+...+ ..+..++|+|...+|..++..|++|++.+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 123344444444332 3458999999999999997 4454555 67999999999999999999999999987
Q ss_pred cC
Q psy11867 398 YS 399 (399)
Q Consensus 398 LV 399 (399)
++
T Consensus 368 ~~ 369 (851)
T COG1205 368 VI 369 (851)
T ss_pred Ee
Confidence 63
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=4.6e-29 Score=252.82 Aligned_cols=255 Identities=15% Similarity=0.196 Sum_probs=187.6
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceeh---------hHHHHHHhhC---CCCCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAA---------FTLTMLSRVN---PSIQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~---------~~l~il~~l~---~~~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
..+|.++++.+++ |++++++|+||||||.+ |++|.+..+. ......+++|++||++||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~--gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWIS--RKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHH
Confidence 3689999999998 79999999999999997 5555665543 23345689999999999999999988
Q ss_pred HHhcc--CCCcEEEEEEcCchhh--hhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHH
Q psy11867 195 KMGKH--ITDLSVRYAVRGENLE--RNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIR 270 (399)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~ 270 (399)
+.... +.+..+...+||.... .......+|+|+|++.. ...++++++|||||||.+... .+.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~---~DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQI---GDIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccc---hhHHHH
Confidence 76643 3355667778876532 12233668999998621 124778999999999998643 355555
Q ss_pred HHHhC-CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCC---------hhhHHHHHHHHhc
Q psy11867 271 IQKRL-PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKN---------IDEKFEAVSNIYG 340 (399)
Q Consensus 271 i~~~l-~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~---------~~~k~~~l~~ll~ 340 (399)
+++.+ +..+|+++||||++.++..+ ..++.+|..+.+. ..+...+++.|..... ...+...+..+..
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 55544 34469999999999888776 5788888888765 2344667777764321 1223223333332
Q ss_pred c--CCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcccC
Q psy11867 341 V--VTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRF-REGEFKIYS 399 (399)
Q Consensus 341 ~--~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F-~~G~~~ILV 399 (399)
. ...+++||||+++++|+.+++.|.+. ++.+..+||+|++. ++++++| ++|+.+|||
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILV 451 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIII 451 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEe
Confidence 2 23468999999999999999999887 78999999999974 5777887 689999986
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.7e-28 Score=254.27 Aligned_cols=243 Identities=18% Similarity=0.246 Sum_probs=182.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
+++++++|+||||||++|.+++++... .+.+++|+.|||++|.|+++.+.+......+..+.+.+++... ....
T Consensus 17 ~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~---~s~~ 90 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK---VSRR 90 (819)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc---cCCC
Confidence 689999999999999999999998763 3458999999999999999988644332225566666665432 2234
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechh-hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD-VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
.+|+|+|||+|++++.. ...++++++|||||+| ++++..........+...++++.|+++||||++... ...++
T Consensus 91 t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l 165 (819)
T TIGR01970 91 TRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLL 165 (819)
T ss_pred CcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHc
Confidence 68999999999998754 3578999999999999 566542223344556667788999999999999764 34566
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhhH----HHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHH---CCCeEEE
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEK----FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK---EGLNVGL 373 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k----~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~---~g~~v~~ 373 (399)
.++..+.+... ...++++|..+...+.. ...+..++.. ..+++||||+++++++.+++.|.+ .++.+..
T Consensus 166 ~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~p 241 (819)
T TIGR01970 166 PDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICP 241 (819)
T ss_pred CCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEE
Confidence 65555544322 22366677655432221 1234444433 357899999999999999999987 4789999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 374 LSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 374 lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+||+|++++|.++++.|++|+.+|||
T Consensus 242 LHg~L~~~eq~~~~~~~~~G~rkVlV 267 (819)
T TIGR01970 242 LYGELSLAAQDRAIKPDPQGRRKVVL 267 (819)
T ss_pred ecCCCCHHHHHHHHhhcccCCeEEEE
Confidence 99999999999999999999999985
No 62
>KOG0349|consensus
Probab=99.97 E-value=9.4e-30 Score=234.01 Aligned_cols=226 Identities=23% Similarity=0.365 Sum_probs=174.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc--EEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCc
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDL--SVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSK 246 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~ 246 (399)
+.|.++|+-|.+||+.|++..+++|..++.+- +.-+..||.....+ ...+.||+|+||+|+.+.+ ..+...+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~i-s~g~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPI-SKGLVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhh-hccceeeee
Confidence 34679999999999999999998887766443 33366676554333 3667899999999999985 446778999
Q ss_pred eeEEEEechhhHhhcCCchHHHHHHHHhCCC------CCcEEEEEeeCCh-hHHHHHHhhCCCCeEEeccccccccccee
Q psy11867 247 IKVFVLDEADVMIATQGHQDFSIRIQKRLPS------DCQIMLFSATYDK-EVMEFAQDMVPNPLIIKLKREEESLDNIK 319 (399)
Q Consensus 247 ~~~lViDEah~l~~~~~~~~~~~~i~~~l~~------~~q~l~~SAT~~~-~v~~~~~~~~~~p~~i~~~~~~~~~~~i~ 319 (399)
++|+|+||||.++. +++.+.+.++...+|. +.|.+++|||+.. ++..+..+.|.=|..+.++.++..++.+.
T Consensus 364 crFlvlDead~lL~-qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLG-QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhh-cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 99999999999986 5899999999888863 5799999999874 57777788888899999888776666665
Q ss_pred EEEEEeC-ChhhHHHHH----------------------------HH---------HhccCCCCcEEEEecchHhHHHHH
Q psy11867 320 QHYVMCK-NIDEKFEAV----------------------------SN---------IYGVVTIGQAMIFCHTRKTAAWLA 361 (399)
Q Consensus 320 ~~~~~~~-~~~~k~~~l----------------------------~~---------ll~~~~~~k~IIF~~s~~~a~~l~ 361 (399)
+....+. ..+.....+ .. .++.+...++||||.++..|..|.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 5443321 111111111 11 122334468999999999999999
Q ss_pred HHHHHCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 362 EKMSKEG---LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 362 ~~L~~~g---~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++|.+.| +.|.++||+..+.+|.+.++.|+.+.++.|+
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLI 563 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEE
Confidence 9998874 5899999999999999999999999998774
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2e-29 Score=243.21 Aligned_cols=248 Identities=17% Similarity=0.213 Sum_probs=168.5
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCch----------
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGEN---------- 213 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~---------- 213 (399)
+++++||||||||++|++|++..+.. ....+++|++|+++|+.|+++.++.+... .+....++..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCc
Confidence 58999999999999999999988754 35678999999999999999999997432 1111122111
Q ss_pred --hhhh---------hccCCcEEEeCchhHHHhhhc-ccc--ccCC--ceeEEEEechhhHhhcCCchHHHHHHHHhCC-
Q psy11867 214 --LERN---------KKITEQIIIGTPGKVLDWGLK-YRF--FDLS--KIKVFVLDEADVMIATQGHQDFSIRIQKRLP- 276 (399)
Q Consensus 214 --~~~~---------~~~~~~IlV~Tp~~l~~~~~~-~~~--~~~~--~~~~lViDEah~l~~~~~~~~~~~~i~~~l~- 276 (399)
.... .....+|+|+||++++..+.. .+. +.+. ..+++||||||.+.+. + ...+..+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~-~~~l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-T-LALILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-H-HHHHHHHHHHHHH
Confidence 0000 012357999999999877554 111 1122 2378999999999753 2 222445554443
Q ss_pred CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeC-ChhhHHHHHHHHhccC-CCCcEEEEecch
Q psy11867 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCK-NIDEKFEAVSNIYGVV-TIGQAMIFCHTR 354 (399)
Q Consensus 277 ~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~~k~~~l~~ll~~~-~~~k~IIF~~s~ 354 (399)
.+.|+++||||+|+.+.+++..+...+......... ......+.+..+. ....+...+..++... ..+++||||+++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~ 232 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTV 232 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCH
Confidence 578999999999988888777654432221111110 0001123332222 2233455555555443 357999999999
Q ss_pred HhHHHHHHHHHHCCC--eEEEEcCCCCHHHHHHH----HHHHhcCCCcccC
Q psy11867 355 KTAAWLAEKMSKEGL--NVGLLSGELTVEQRLSI----LDRFREGEFKIYS 399 (399)
Q Consensus 355 ~~a~~l~~~L~~~g~--~v~~lhg~~~~~~R~~v----~~~F~~G~~~ILV 399 (399)
++|+.++..|.+.+. .+..+||++++.+|.++ ++.|++|+.+|||
T Consensus 233 ~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilv 283 (358)
T TIGR01587 233 DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIV 283 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999999999988765 59999999999999764 8999999999986
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.96 E-value=2.1e-28 Score=254.06 Aligned_cols=248 Identities=17% Similarity=0.252 Sum_probs=184.9
Q ss_pred hhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCch
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGEN 213 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (399)
+..+.+ +++++++|+||||||++|.+++++.... ..+++|+.|||++|.|+++.+........+..+.+.+++..
T Consensus 14 ~~~l~~--~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 14 LTALKT--APQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHh--CCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 344444 6899999999999999999999976432 34899999999999999998865433323567777777664
Q ss_pred hhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh-HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhH
Q psy11867 214 LERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV-MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEV 292 (399)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~-l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v 292 (399)
... ...+|+|+|||+|++++.. ...++++++|||||+|. .++..........+.+.++++.|+++||||++...
T Consensus 89 ~~~---~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~ 163 (812)
T PRK11664 89 KVG---PNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR 163 (812)
T ss_pred ccC---CCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHH
Confidence 322 2347999999999998754 45789999999999996 33332233444566677888999999999998652
Q ss_pred HHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHH-----HHHHHhccCCCCcEEEEecchHhHHHHHHHHHH-
Q psy11867 293 MEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFE-----AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK- 366 (399)
Q Consensus 293 ~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~- 366 (399)
...++.++..+..... ...++++|..+... .+.. .+..++.. ..+.+||||+++++++.+++.|.+
T Consensus 164 ---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~-~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~ 235 (812)
T PRK11664 164 ---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAH-QRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASR 235 (812)
T ss_pred ---HHHhcCCCCEEEecCc---cccceEEeccCchh-hhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 2456666555543322 22467777655432 2322 34444443 358999999999999999999987
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 367 --EGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 367 --~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++.+..+||+|++++|..+++.|++|+.+|||
T Consensus 236 ~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlv 270 (812)
T PRK11664 236 VASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVL 270 (812)
T ss_pred ccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEE
Confidence 578899999999999999999999999999985
No 65
>KOG0952|consensus
Probab=99.96 E-value=7e-29 Score=249.23 Aligned_cols=273 Identities=20% Similarity=0.285 Sum_probs=201.2
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-------CCCCCeEEEEeCcHHHHHHHHHH
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-------SIQEPQVLCLAPTYELAIQIGEV 192 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-------~~~~~~~lil~Pt~~La~Q~~~~ 192 (399)
-++|..++.+|+.++|.+.+. ..|++||||||||||..|+|.||+.+.+ .....+++||+|+++||..+++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~S-neNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKS-NENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcC-CCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 367889999999999999987 8999999999999999999999999864 23456899999999999999888
Q ss_pred HHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcccc---ccCCceeEEEEechhhHhhcCCch--HH
Q psy11867 193 VAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRF---FDLSKIKVFVLDEADVMIATQGHQ--DF 267 (399)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~---~~~~~~~~lViDEah~l~~~~~~~--~~ 267 (399)
+.+-...+ ++.+.-.+|.....+.....++|+|+||+.+--. .+... --++.+++|||||+|.+-+..|.. ..
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvv-TRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEti 261 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVV-TRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETI 261 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeee-eeeeccchhhhhheeeEEeeeehhhcCcccchHHHH
Confidence 87766655 8899999999988777777889999999986433 22222 136789999999999998765432 22
Q ss_pred HHHHHH---hCCCCCcEEEEEeeCChhHHHHHHhhCCCC--eEEecccccccccceeEEEEEeCCh----------hhHH
Q psy11867 268 SIRIQK---RLPSDCQIMLFSATYDKEVMEFAQDMVPNP--LIIKLKREEESLDNIKQHYVMCKNI----------DEKF 332 (399)
Q Consensus 268 ~~~i~~---~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p--~~i~~~~~~~~~~~i~~~~~~~~~~----------~~k~ 332 (399)
+.+.++ ......+++++|||+|+. .+++.....+| ..+..+.... +-.+.+.++-++.. +..+
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yR-PvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYR-PVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeeccccc-ccceeeeEEeeecccchhhhhhHHHHHH
Confidence 223332 234577899999999975 34444333332 1222222222 22355555554432 1123
Q ss_pred HHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC-----------------------CCeEEEEcCCCCHHHHHHHHHH
Q psy11867 333 EAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE-----------------------GLNVGLLSGELTVEQRLSILDR 389 (399)
Q Consensus 333 ~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~-----------------------g~~v~~lhg~~~~~~R~~v~~~ 389 (399)
+.+.+++. .+.+++|||++++.+...|+.|.+. ....+++|+||...+|..+.+.
T Consensus 340 ~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 33444433 3469999999999999999888762 1347889999999999999999
Q ss_pred HhcCCCcccC
Q psy11867 390 FREGEFKIYS 399 (399)
Q Consensus 390 F~~G~~~ILV 399 (399)
|..|-++|||
T Consensus 418 F~~G~i~vL~ 427 (1230)
T KOG0952|consen 418 FKEGHIKVLC 427 (1230)
T ss_pred HhcCCceEEE
Confidence 9999999986
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=3.8e-28 Score=242.80 Aligned_cols=259 Identities=14% Similarity=0.075 Sum_probs=176.0
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
...|+++|.+|++.++. +++.++++|||+|||+++...+...+.. ...++|||+||++|+.|+.+.+++++... .
T Consensus 112 ~~~~r~~Q~~av~~~l~--~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK--NNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP-R 186 (501)
T ss_pred cCCCCHHHHHHHHHHHh--cCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc-c
Confidence 45899999999999998 5889999999999999765432222222 33489999999999999999999987432 3
Q ss_pred cEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
..+....+|.... ...+|+|+||+++.+.. ...+++++++|+||||++.+. ....++..+++..+++
T Consensus 187 ~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~----~~~~~~~~~iIvDEaH~~~~~-----~~~~il~~~~~~~~~l 253 (501)
T PHA02558 187 EAMHKIYSGTAKD----TDAPIVVSTWQSAVKQP----KEWFDQFGMVIVDECHLFTGK-----SLTSIITKLDNCKFKF 253 (501)
T ss_pred cceeEEecCcccC----CCCCEEEeeHHHHhhch----hhhccccCEEEEEchhcccch-----hHHHHHHhhhccceEE
Confidence 3333444554321 34689999999987642 224678999999999998642 2446666777778999
Q ss_pred EEEeeCChhHHHHHH-hhCCCCeEEecccccc----cccceeEEEEE----------------------eCChhhHHHHH
Q psy11867 283 LFSATYDKEVMEFAQ-DMVPNPLIIKLKREEE----SLDNIKQHYVM----------------------CKNIDEKFEAV 335 (399)
Q Consensus 283 ~~SAT~~~~v~~~~~-~~~~~p~~i~~~~~~~----~~~~i~~~~~~----------------------~~~~~~k~~~l 335 (399)
+||||+......... ..+.+|+...+...+. .+...+...+. ......+...+
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I 333 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWI 333 (501)
T ss_pred EEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHH
Confidence 999998653221111 1112232222211100 00000000000 01112233344
Q ss_pred HHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 336 SNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 336 ~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++.... ...+++|||++.++|+.|++.|.+.|.++..+||+|+.++|..+++.|++|+..|||
T Consensus 334 ~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLv 399 (501)
T PHA02558 334 ANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIV 399 (501)
T ss_pred HHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 4443322 346899999999999999999999999999999999999999999999999988875
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.1e-28 Score=236.90 Aligned_cols=265 Identities=18% Similarity=0.241 Sum_probs=196.5
Q ss_pred HHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 116 KGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 116 ~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
..|+. +||..+++-|.++|..+++ |+|+++..|||+||++||.+|++-. .+-+|||+|..+|++.+.+.++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~--g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLS--GKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHc--CCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHH
Confidence 34554 7999999999999999999 7999999999999999999999854 2359999999999999999998
Q ss_pred HHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-CchH
Q psy11867 195 KMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ-GHQD 266 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~-~~~~ 266 (399)
..+ +...+..+..+.+. ...+..+++.-+|++|..-.. .+.+.-..+.++||||||++...+ .|..
T Consensus 79 ~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f-~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 79 AAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRF-LELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHH-HHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 874 44444444322211 113456899999999865311 123335678899999999997531 2666
Q ss_pred HHHHH---HHhCCCCCcEEEEEeeCChhHHHHHHhhC--CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc
Q psy11867 267 FSIRI---QKRLPSDCQIMLFSATYDKEVMEFAQDMV--PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV 341 (399)
Q Consensus 267 ~~~~i---~~~l~~~~q~l~~SAT~~~~v~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~ 341 (399)
...++ ...++ +..++++|||-++.+...+...+ .++..+... ...+|+....+...+...+...+.+ ...
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpNi~~~v~~~~~~~~q~~fi~~-~~~ 227 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPNLALKVVEKGEPSDQLAFLAT-VLP 227 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCchhhhhhhhcccHHHHHHHHHh-hcc
Confidence 55544 44455 88999999999999888777655 344333322 2234554444333323334443333 224
Q ss_pred CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 342 VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 342 ~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+..||||.|++.++.+++.|...|+++..|||||+.++|+.+.++|..|+++|+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiV 285 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMV 285 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 4456799999999999999999999999999999999999999999999999999987
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.8e-26 Score=221.15 Aligned_cols=257 Identities=17% Similarity=0.178 Sum_probs=168.7
Q ss_pred HHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC---CcEE
Q psy11867 129 IQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT---DLSV 205 (399)
Q Consensus 129 iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~---~~~~ 205 (399)
+|.++++.+.++...+++++||||||||.+|++|++.. ..++++++|+++|+.|+++.++.+...+. +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998522358999999999999999999842 23589999999999999999998874331 2333
Q ss_pred EEEEcCch-----hh----------------hh--hccCCcEEEeCchhHHHhhhcc---cc-c---cCCceeEEEEech
Q psy11867 206 RYAVRGEN-----LE----------------RN--KKITEQIIIGTPGKVLDWGLKY---RF-F---DLSKIKVFVLDEA 255 (399)
Q Consensus 206 ~~~~~~~~-----~~----------------~~--~~~~~~IlV~Tp~~l~~~~~~~---~~-~---~~~~~~~lViDEa 255 (399)
....|... .. +. ....++|+++||+.|..++... +. . .+.+++++||||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 33333211 00 00 0235789999999887654321 11 1 2578999999999
Q ss_pred hhHhhcCC-chH---HHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhh--CCCCeEEeccc-----c-------------
Q psy11867 256 DVMIATQG-HQD---FSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDM--VPNPLIIKLKR-----E------------- 311 (399)
Q Consensus 256 h~l~~~~~-~~~---~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~--~~~p~~i~~~~-----~------------- 311 (399)
|.+...+. ... ....+.+......+++++|||+++.+...+... +..|....-+. .
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99753211 111 222333333445799999999999888877765 44554332222 0
Q ss_pred cccccceeEEEEEeCChhhHHHHHHH-------HhccCCCCcEEEEecchHhHHHHHHHHHHCC--CeEEEEcCCCCHHH
Q psy11867 312 EESLDNIKQHYVMCKNIDEKFEAVSN-------IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEG--LNVGLLSGELTVEQ 382 (399)
Q Consensus 312 ~~~~~~i~~~~~~~~~~~~k~~~l~~-------ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g--~~v~~lhg~~~~~~ 382 (399)
......+.+.+.. .. ..|...+.. .++....+++||||++++.|+.++..|++.| +.+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~-~~-~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP-AP-DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe-CC-chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 0011345555554 21 222222222 2223355799999999999999999998864 57889999999999
Q ss_pred HHHHHHHHhcCCCcccC
Q psy11867 383 RLSILDRFREGEFKIYS 399 (399)
Q Consensus 383 R~~v~~~F~~G~~~ILV 399 (399)
|.++ ++.+|||
T Consensus 313 R~~~------~~~~iLV 323 (357)
T TIGR03158 313 RERA------MQFDILL 323 (357)
T ss_pred HHHh------ccCCEEE
Confidence 9754 3566654
No 69
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=5e-26 Score=195.68 Aligned_cols=162 Identities=27% Similarity=0.419 Sum_probs=134.6
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEE
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVR 206 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 206 (399)
||+|.++++.+.+ |+++++.||||+|||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. ..+.+.
T Consensus 1 t~~Q~~~~~~i~~--~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIIS--GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHT--TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEE
T ss_pred CHHHHHHHHHHHc--CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccc-cccccc
Confidence 7899999999996 79999999999999999999999988776 5568999999999999999999999876 367777
Q ss_pred EEEcCchhhhh----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC--CCCc
Q psy11867 207 YAVRGENLERN----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP--SDCQ 280 (399)
Q Consensus 207 ~~~~~~~~~~~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~--~~~q 280 (399)
...++...... ....++|+|+||++|.+++...+. ++.+++++|+||+|.+... .+...+..+...+. .+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCCCc
Confidence 77777654311 135689999999999998766333 6777999999999999875 66777777777763 3689
Q ss_pred EEEEEeeCChhHHH
Q psy11867 281 IMLFSATYDKEVME 294 (399)
Q Consensus 281 ~l~~SAT~~~~v~~ 294 (399)
++++|||+++.+++
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999966654
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.1e-24 Score=217.82 Aligned_cols=263 Identities=16% Similarity=0.124 Sum_probs=191.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+++|..++|.++. |+ |+++.||+|||++|++|++..... ++.++|++||++||.|.++++..+...+ ++
T Consensus 102 ~~p~~VQ~~~~~~ll~--G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~l-Gl 173 (656)
T PRK12898 102 QRHFDVQLMGGLALLS--GR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEAL-GL 173 (656)
T ss_pred CCCChHHHHHHHHHhC--CC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhc-CC
Confidence 3799999999999998 56 999999999999999999987653 5679999999999999999999999887 89
Q ss_pred EEEEEEcCchhhh-hhccCCcEEEeCchhH-HHhhhccc------------------------cccCCceeEEEEechhh
Q psy11867 204 SVRYAVRGENLER-NKKITEQIIIGTPGKV-LDWGLKYR------------------------FFDLSKIKVFVLDEADV 257 (399)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~~IlV~Tp~~l-~~~~~~~~------------------------~~~~~~~~~lViDEah~ 257 (399)
++.+..|+..... .....++|+|+|...| .+++..+- ..-.+.+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 9999999865432 3356789999999988 55543221 11246689999999995
Q ss_pred Hhhc----------C-Cch---H---HHHHHHHhC---------------------------------------------
Q psy11867 258 MIAT----------Q-GHQ---D---FSIRIQKRL--------------------------------------------- 275 (399)
Q Consensus 258 l~~~----------~-~~~---~---~~~~i~~~l--------------------------------------------- 275 (399)
++=. . ... . ....+.+.+
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 5300 0 000 0 000000000
Q ss_pred -----------------------------------C---------------------C----------------CCcEEE
Q psy11867 276 -----------------------------------P---------------------S----------------DCQIML 283 (399)
Q Consensus 276 -----------------------------------~---------------------~----------------~~q~l~ 283 (399)
+ + -.++.+
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 0 0 016778
Q ss_pred EEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCC--CCcEEEEecchHhHHHHH
Q psy11867 284 FSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVT--IGQAMIFCHTRKTAAWLA 361 (399)
Q Consensus 284 ~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~--~~k~IIF~~s~~~a~~l~ 361 (399)
||||.+....++...|..+++.|...... .....+.++.+. ...|...|.+++.... ..++||||+|++.++.++
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t-~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLT-AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 99999988888888888887776554332 223344455554 4678888998887643 468999999999999999
Q ss_pred HHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 362 EKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 362 ~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..|.+.|+++..+||++.+.+ +.+..|+.+...|||
T Consensus 491 ~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlV 526 (656)
T PRK12898 491 ALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITV 526 (656)
T ss_pred HHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEE
Confidence 999999999999999966544 455555555555664
No 71
>KOG0951|consensus
Probab=99.93 E-value=4.3e-25 Score=224.84 Aligned_cols=284 Identities=19% Similarity=0.217 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCC--------CCeEEEEe
Q psy11867 109 HLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ--------EPQVLCLA 180 (399)
Q Consensus 109 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~--------~~~~lil~ 180 (399)
.++.+-..++ .|...++++|....++.+.+ ..|+++|||||+|||..+++.|++.+..+.+ ..+++|++
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~-~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRG-DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcC-cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 4555555554 46677999999999999987 7899999999999999999999998865432 34799999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEechhhHh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDEADVMI 259 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDEah~l~ 259 (399)
|+++|++.+...+.+....+ +++|.-..|............+|+||||+..--.-.+.... ..+-++++|+||.|.+.
T Consensus 372 PmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred eHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999999998888777 88888888888877777777899999999864332222222 24467899999999997
Q ss_pred hcCCchH--HHHHHHHhC---CCCCcEEEEEeeCChh--HHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh--hh
Q psy11867 260 ATQGHQD--FSIRIQKRL---PSDCQIMLFSATYDKE--VMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI--DE 330 (399)
Q Consensus 260 ~~~~~~~--~~~~i~~~l---~~~~q~l~~SAT~~~~--v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~--~~ 330 (399)
+..|-.- .+.+..+.. ...++.+++|||+|+. |..|++-.. +-.+..++... +-.++|.|+-+... ..
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~syR-pvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSSYR-PVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc--ccccccCcccC-cCCccceEeccccCCchH
Confidence 7655332 222333332 3478999999999975 334333222 22333333333 33466666654322 23
Q ss_pred HHHH-----HHHHhccCCCCcEEEEecchHhHHHHHHHHHH-------------------------------------CC
Q psy11867 331 KFEA-----VSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK-------------------------------------EG 368 (399)
Q Consensus 331 k~~~-----l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~-------------------------------------~g 368 (399)
++++ ..+++.....+++|||+++|+++...|+.++. ..
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 3333 33345555668999999999998888888773 14
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 369 LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 369 ~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.++++|+||+..+|..+.+.|++|.++|||
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlv 638 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLV 638 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEE
Confidence 5689999999999999999999999999986
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=4.2e-24 Score=225.50 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=186.2
Q ss_pred CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 122 GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 122 g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
+...|+++|.+++..++. +|+++++|||+|||++|++++...+. ..+.++|||+||++|+.|+.+.++.+....
T Consensus 12 ~~~~~r~yQ~~~~~~~l~---~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~- 85 (773)
T PRK13766 12 NTIEARLYQQLLAATALK---KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIP- 85 (773)
T ss_pred CcCCccHHHHHHHHHHhc---CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-
Confidence 455899999999999887 59999999999999999999988874 345789999999999999999999876432
Q ss_pred CcEEEEEEcCchhhh--hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 202 DLSVRYAVRGENLER--NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~--~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
...+....|+..... ......+|+|+||+.+...+.. +.+.+.+++++||||||++.... ....+...........
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~-~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNY-AYVYIAERYHEDAKNP 163 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccc-cHHHHHHHHHhcCCCC
Confidence 345555555544322 1244678999999999776543 45678899999999999986542 2333334444445567
Q ss_pred cEEEEEeeCCh---hHHHHHHhhCCCCeEEe--------------------cc--cc----------------------c
Q psy11867 280 QIMLFSATYDK---EVMEFAQDMVPNPLIIK--------------------LK--RE----------------------E 312 (399)
Q Consensus 280 q~l~~SAT~~~---~v~~~~~~~~~~p~~i~--------------------~~--~~----------------------~ 312 (399)
++++||||... .+...+.......+.+. +. .. .
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999532 22222222211111100 00 00 0
Q ss_pred cc--cc-------------ceeEE--------------------------------------------------------
Q psy11867 313 ES--LD-------------NIKQH-------------------------------------------------------- 321 (399)
Q Consensus 313 ~~--~~-------------~i~~~-------------------------------------------------------- 321 (399)
.. .. .+.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 00000
Q ss_pred ---------------EEEeCChhhHHHHHHHHhcc----CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCC-----
Q psy11867 322 ---------------YVMCKNIDEKFEAVSNIYGV----VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE----- 377 (399)
Q Consensus 322 ---------------~~~~~~~~~k~~~l~~ll~~----~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~----- 377 (399)
...+.....|...|.+++.. ...+++||||+++++|+.|++.|...|+++..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00001112355555555544 456799999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHHhcCCCcccC
Q psy11867 378 ---LTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 378 ---~~~~~R~~v~~~F~~G~~~ILV 399 (399)
|++.+|..++++|++|+.+|||
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLv 428 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLV 428 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 9999999999999999999985
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=8.8e-24 Score=215.77 Aligned_cols=262 Identities=17% Similarity=0.191 Sum_probs=179.8
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.|. .|+++|..+.+.++. |+ |+++.||+|||++|++|++..... +..++|++||++||.|.++++..+...+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~--G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHE--GN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcC--Cc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 465 899999999998876 45 999999999999999999865543 5569999999999999999999999987
Q ss_pred CCcEEEEEEcCch-h-hhhhccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHhhcC----------
Q psy11867 201 TDLSVRYAVRGEN-L-ERNKKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMIATQ---------- 262 (399)
Q Consensus 201 ~~~~~~~~~~~~~-~-~~~~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~~~~---------- 262 (399)
++++.+..|+.. . .+.....++|++|||++| .+++... ....++.++++|+||||.|+=..
T Consensus 147 -Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 -GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred -CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 899999998876 2 333356789999999999 5544332 12346889999999999774110
Q ss_pred -----CchHHHHHHHHhCCC--------CC--------------------------------------------------
Q psy11867 263 -----GHQDFSIRIQKRLPS--------DC-------------------------------------------------- 279 (399)
Q Consensus 263 -----~~~~~~~~i~~~l~~--------~~-------------------------------------------------- 279 (399)
........+...+.. ..
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 011111122222211 11
Q ss_pred -----------------------------------------------------------cEEEEEeeCChhHHHHHHhhC
Q psy11867 280 -----------------------------------------------------------QIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 280 -----------------------------------------------------------q~l~~SAT~~~~v~~~~~~~~ 300 (399)
++.+||.|....-.++...|-
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 223333333222222222221
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCC
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGEL 378 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 378 (399)
-+ .+.+... .........-........|...+...+... ...++||||+|++.++.++..|.+.|+++..+||++
T Consensus 386 l~--v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~ 462 (790)
T PRK09200 386 ME--VVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKN 462 (790)
T ss_pred Cc--EEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 11 1111111 111111111112224467888888887653 457899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy11867 379 TVEQRLSILDRFREGE 394 (399)
Q Consensus 379 ~~~~R~~v~~~F~~G~ 394 (399)
.+.+|..+...++.|.
T Consensus 463 ~~~e~~~i~~ag~~g~ 478 (790)
T PRK09200 463 AAKEAQIIAEAGQKGA 478 (790)
T ss_pred cHHHHHHHHHcCCCCe
Confidence 9999999999988884
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.7e-23 Score=210.61 Aligned_cols=265 Identities=17% Similarity=0.171 Sum_probs=181.0
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.|. .|+++|..+.+.++. |+ |++++||+|||++|.+|++-.... +..+.|++||++||.|.++++.++...+
T Consensus 53 lg~-~p~~vQlig~~~l~~--G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHK--GK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCC-CccchHHhhhhhhcC--Cc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 344 799999999998876 44 999999999999999999543333 3359999999999999999999999987
Q ss_pred CCcEEEEEEcCchhhhh-hccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHhhcC--------C--
Q psy11867 201 TDLSVRYAVRGENLERN-KKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMIATQ--------G-- 263 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~~~~--------~-- 263 (399)
++++.+..++...... ....++|+||||++| .+++...- .+.++.+.++|+||+|+|+-.. |
T Consensus 125 -GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 7999999988665433 345689999999999 88865442 3467899999999999886311 0
Q ss_pred --chH---HHHHHHHhCCC--------CC---------------------------------------------------
Q psy11867 264 --HQD---FSIRIQKRLPS--------DC--------------------------------------------------- 279 (399)
Q Consensus 264 --~~~---~~~~i~~~l~~--------~~--------------------------------------------------- 279 (399)
... ....+.+.+.. ..
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 000 01112222211 01
Q ss_pred ----------------------------------------------------------cEEEEEeeCChhHHHHHHhhCC
Q psy11867 280 ----------------------------------------------------------QIMLFSATYDKEVMEFAQDMVP 301 (399)
Q Consensus 280 ----------------------------------------------------------q~l~~SAT~~~~v~~~~~~~~~ 301 (399)
++.+||.|.......+...|--
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 2223333332222222222211
Q ss_pred CCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 302 NPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 302 ~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
+-+. +.. +.........-..+.....|..++.+.+.. ....|+||||++++.++.++..|.+.|+++..+||+
T Consensus 364 ~vv~--IPt-nkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVV--VPT-NRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEE--eCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 1111 111 111111111112334456788777765532 245689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccC
Q psy11867 380 VEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 380 ~~~R~~v~~~F~~G~~~ILV 399 (399)
+.+|++.+..|+.|...|+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred hHHHHHHHHHhcCCCceEEE
Confidence 88999999999999988875
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=2.8e-23 Score=210.34 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=173.3
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.|. .|+++|......+.. | .+++++||+|||++|++|++..... +..++|++|+++||.|.++++..+...+
T Consensus 67 lgl-rpydVQlig~l~l~~--G--~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQ--G--NIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCC-CccHHHHHHHHHhcC--C--ceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 454 667777666665543 3 6999999999999999998776654 3459999999999999999999998887
Q ss_pred CCcEEEEEEcCc---hh---hhhhccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHhhcCC-----
Q psy11867 201 TDLSVRYAVRGE---NL---ERNKKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMIATQG----- 263 (399)
Q Consensus 201 ~~~~~~~~~~~~---~~---~~~~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~~~~~----- 263 (399)
++++....++. .+ .+.....++|++|||++| .+++... ....++.+.++|+||||.|+-...
T Consensus 139 -GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 139 -GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred -CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 78877766652 12 122345789999999999 4544321 234477899999999998852110
Q ss_pred ----------chHHHHHHHHhCCCC--------C----------------------------------------------
Q psy11867 264 ----------HQDFSIRIQKRLPSD--------C---------------------------------------------- 279 (399)
Q Consensus 264 ----------~~~~~~~i~~~l~~~--------~---------------------------------------------- 279 (399)
.......+.+.+.+. .
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 011111222222111 1
Q ss_pred ---------------------------------------------------------------cEEEEEeeCChhHHHHH
Q psy11867 280 ---------------------------------------------------------------QIMLFSATYDKEVMEFA 296 (399)
Q Consensus 280 ---------------------------------------------------------------q~l~~SAT~~~~v~~~~ 296 (399)
++.+||.|......+|.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 23333444332233333
Q ss_pred HhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEE
Q psy11867 297 QDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLL 374 (399)
Q Consensus 297 ~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~l 374 (399)
..|-.+ .+.+... .........-..+.....|..++...+.. ....++||||++++.++.++..|.+.|+++.++
T Consensus 378 ~iY~l~--v~~IPt~-kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 378 ETYSLS--VVKIPTN-KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred HHhCCC--EEEcCCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 222111 1111111 11111111112233456788888887765 345789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCC
Q psy11867 375 SGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 375 hg~~~~~~R~~v~~~F~~G~~ 395 (399)
||++.+.+|..+.+.|+.|.+
T Consensus 455 ~a~~~~~E~~ii~~ag~~g~V 475 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKGAV 475 (762)
T ss_pred cCCChHHHHHHHHHcCCCCeE
Confidence 999999999999888888843
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=9.2e-23 Score=192.59 Aligned_cols=159 Identities=20% Similarity=0.162 Sum_probs=121.6
Q ss_pred CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 122 GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 122 g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
+..+++.+|.......+. +|.+++.|||-|||..+++-+...+.... + ++|+++||+-|+.|..+.++++..- +
T Consensus 12 ~~ie~R~YQ~~i~a~al~---~NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~i-p 85 (542)
T COG1111 12 NTIEPRLYQLNIAAKALF---KNTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGI-P 85 (542)
T ss_pred ccccHHHHHHHHHHHHhh---cCeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCC-C
Confidence 345789999999998886 79999999999999999998888887643 3 8999999999999999999998643 2
Q ss_pred CcEEEEEEcCchhhhh--hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 202 DLSVRYAVRGENLERN--KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~--~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
.-.+....|...-++. .....+|+|+||+.+.+-+ ..+.+++.++.++|||||||-.....+.. +....-....++
T Consensus 86 ~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl-~~Grid~~dv~~lifDEAHRAvGnyAYv~-Va~~y~~~~k~~ 163 (542)
T COG1111 86 EDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDL-KAGRIDLDDVSLLIFDEAHRAVGNYAYVF-VAKEYLRSAKNP 163 (542)
T ss_pred hhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHH-hcCccChHHceEEEechhhhccCcchHHH-HHHHHHHhccCc
Confidence 3445555555444322 2566789999999998775 45788999999999999999754322222 333233335678
Q ss_pred cEEEEEeeC
Q psy11867 280 QIMLFSATY 288 (399)
Q Consensus 280 q~l~~SAT~ 288 (399)
.++++|||.
T Consensus 164 ~ilgLTASP 172 (542)
T COG1111 164 LILGLTASP 172 (542)
T ss_pred eEEEEecCC
Confidence 899999993
No 77
>KOG0351|consensus
Probab=99.91 E-value=1.7e-23 Score=216.78 Aligned_cols=266 Identities=16% Similarity=0.153 Sum_probs=193.1
Q ss_pred HHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 118 VYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 118 l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
...+|...+++-|.+||..++. |+|+++..|||.||++||.+|++- .++..|||+|..+|++.+...+...
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~--Gkd~fvlmpTG~GKSLCYQlPA~l------~~gitvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLS--GKDCFVLMPTGGGKSLCYQLPALL------LGGVTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred HHHhccccCChhHHHHHHHHHc--CCceEEEeecCCceeeEeeccccc------cCCceEEeccHHHHHHHHHHhhhhc-
Confidence 3457999999999999999998 799999999999999999999872 3347999999999998877766443
Q ss_pred ccCCCcEEEEEEcCchhhh-------hhcc--CCcEEEeCchhHHHhhhcc-ccccCCc---eeEEEEechhhHhhcC-C
Q psy11867 198 KHITDLSVRYAVRGENLER-------NKKI--TEQIIIGTPGKVLDWGLKY-RFFDLSK---IKVFVLDEADVMIATQ-G 263 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~-------~~~~--~~~IlV~Tp~~l~~~~~~~-~~~~~~~---~~~lViDEah~l~~~~-~ 263 (399)
++......++..... ...+ ..+|+.-||+++...-.-. ....+.. +.++||||||+....+ .
T Consensus 328 ----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHd 403 (941)
T KOG0351|consen 328 ----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHD 403 (941)
T ss_pred ----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccc
Confidence 444455544443321 1123 4589999999987542111 1223445 8999999999986431 2
Q ss_pred chHHHHHHHH--hCCCCCcEEEEEeeCChhHHHHHHhhC--CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHh
Q psy11867 264 HQDFSIRIQK--RLPSDCQIMLFSATYDKEVMEFAQDMV--PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339 (399)
Q Consensus 264 ~~~~~~~i~~--~l~~~~q~l~~SAT~~~~v~~~~~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 339 (399)
|+....++.. .-.+...+|++|||.+..+...+-..+ ++|..+.-. ....|+...+..-...+.-+..+...-
T Consensus 404 FRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s---fnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS---FNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred ccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc---CCCCCceEEEEeccCccchHHHHHHhh
Confidence 4444443322 222348899999999988877666554 556544322 234555444443332233344444455
Q ss_pred ccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 340 ~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++....||||.+++.|+.++..|+..|+.+..||+||+..+|..|.+.|..|+++|+|
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~Viv 540 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIV 540 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEE
Confidence 556667899999999999999999999999999999999999999999999999999986
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1e-22 Score=199.93 Aligned_cols=270 Identities=20% Similarity=0.248 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
....+.+.+.+.--+++|..|++++..|..+ .+.+-+++|..|||||++++++++..+.. |.++..++||.-|
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTEIL 323 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTEIL 323 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHHHH
Confidence 4455666655443448999999999999865 35788999999999999999999988865 5679999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCchh-------hhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 186 AIQIGEVVAKMGKHITDLSVRYAVRGENL-------ERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 186 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|.|.++.+.++...+ ++.+.+..|...- .....+..+|+|||..-+. ....++++.++|+||-||+
T Consensus 324 A~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 324 AEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecceeEEEEeccccc
Confidence 999999999999887 6888888876432 1222556799999987443 3556889999999999997
Q ss_pred hhcCCchHHHHHHHHhCCC-CCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPS-DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~-~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
.- .+...+.. ... .+.++.||||.=+.. ++-..+.|--.=.++.-..-...|....+......+-++.+.+
T Consensus 397 GV-----~QR~~L~~-KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 397 GV-----HQRLALRE-KGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred cH-----HHHHHHHH-hCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 43 22333333 333 688999999943332 2222222221111111112223455555554444444444444
Q ss_pred HhccCCCCcEEEEecchH--------hHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRK--------TAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
-+. .+.++.+.|+-++ .|..+++.|+.. +.++..+||.|+.+++++++++|++|+++|||
T Consensus 469 ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILV 538 (677)
T COG1200 469 EIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILV 538 (677)
T ss_pred HHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEE
Confidence 333 3468999998765 456777777754 66799999999999999999999999999997
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=3.1e-22 Score=205.93 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=168.6
Q ss_pred CChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 125 APSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
.+++.|.++++.+.++ .++++++.|+||||||.+|+.++...+.. +.++|||+||++|+.|+++.+++.. +.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f----g~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF----GA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh----CC
Confidence 6899999999999873 35889999999999999999888777654 4579999999999999999998753 34
Q ss_pred EEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC----CchHHHHHHH
Q psy11867 204 SVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ----GHQDFSIRIQ 272 (399)
Q Consensus 204 ~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~----~~~~~~~~i~ 272 (399)
.+....++..... ...+..+|+|+|++.+. ..+++++++|+||+|...-.+ .+......+.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 5666666643321 12356789999998763 246789999999999864221 1111111233
Q ss_pred HhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhh------HHHHHHHHh-ccC-CC
Q psy11867 273 KRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDE------KFEAVSNIY-GVV-TI 344 (399)
Q Consensus 273 ~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~------k~~~l~~ll-~~~-~~ 344 (399)
+....+.+++++|||.+.+....+..- ....+.+...........-.++....... ....+.+.+ +.. ..
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g 366 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERG 366 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcC
Confidence 344568999999999775554444321 11222222111000001111111111000 001122222 222 22
Q ss_pred CcEEEEecch------------------------------------------------------------HhHHHHHHHH
Q psy11867 345 GQAMIFCHTR------------------------------------------------------------KTAAWLAEKM 364 (399)
Q Consensus 345 ~k~IIF~~s~------------------------------------------------------------~~a~~l~~~L 364 (399)
.++|||+|++ ..++++++.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 4788887752 2567888888
Q ss_pred HHC--CCeEEEEcCCCC--HHHHHHHHHHHhcCCCcccC
Q psy11867 365 SKE--GLNVGLLSGELT--VEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 365 ~~~--g~~v~~lhg~~~--~~~R~~v~~~F~~G~~~ILV 399 (399)
.+. +.++..+|++++ ..+|+.++++|++|+.+|||
T Consensus 447 ~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILV 485 (679)
T PRK05580 447 AELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILI 485 (679)
T ss_pred HHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEE
Confidence 876 789999999987 46799999999999999986
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.90 E-value=2.1e-22 Score=209.18 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=171.2
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC-C
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI-T 201 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~ 201 (399)
...|+|+|..+...... +..+++.||||+|||.+++..+...+.. ....+++|..||+++++|+++.++++.... .
T Consensus 284 ~~~p~p~Q~~~~~~~~~--pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQ--PGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhccC--CCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 45899999988554332 6789999999999999998876654443 345679999999999999999998754322 1
Q ss_pred CcEEEEEEcCchhhh------------------------------hhccCCcEEEeCchhHHHhhhccccccCCcee---
Q psy11867 202 DLSVRYAVRGENLER------------------------------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIK--- 248 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~------------------------------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~--- 248 (399)
...+....|...+.. .......|+|||+.+++......+...++.+.
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 234444444322110 00112579999999998766555544444444
Q ss_pred -EEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCChhHHHHHHhhCCC----------CeEEecccc---cc
Q psy11867 249 -VFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDKEVMEFAQDMVPN----------PLIIKLKRE---EE 313 (399)
Q Consensus 249 -~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~v~~~~~~~~~~----------p~~i~~~~~---~~ 313 (399)
+|||||+|.+-. .....+..+++.+ .....+|+||||+|....+.+...+.. |........ ..
T Consensus 441 svvIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 441 SVLIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred CeEEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 899999999732 3344455555544 246789999999998766543332111 111000000 00
Q ss_pred ccc------ceeEEEE--Ee--CChhhHHHHHHHHhcc-CCCCcEEEEecchHhHHHHHHHHHHCC---CeEEEEcCCCC
Q psy11867 314 SLD------NIKQHYV--MC--KNIDEKFEAVSNIYGV-VTIGQAMIFCHTRKTAAWLAEKMSKEG---LNVGLLSGELT 379 (399)
Q Consensus 314 ~~~------~i~~~~~--~~--~~~~~k~~~l~~ll~~-~~~~k~IIF~~s~~~a~~l~~~L~~~g---~~v~~lhg~~~ 379 (399)
... .....+. .. .........+..+++. ...++++|||||++.|+.+++.|++.+ .++..+||+++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000 0111111 11 1111112233333332 234689999999999999999998764 68999999999
Q ss_pred HHHH----HHHHHHH-hcCC---CcccC
Q psy11867 380 VEQR----LSILDRF-REGE---FKIYS 399 (399)
Q Consensus 380 ~~~R----~~v~~~F-~~G~---~~ILV 399 (399)
..+| .++++.| ++|+ .+|||
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 9999 4678888 6776 35765
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.5e-22 Score=204.90 Aligned_cols=127 Identities=19% Similarity=0.195 Sum_probs=104.9
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+++|...--.+.. .-|+.++||+|||++|.+|++.....+ ..++||+||++||.|.++++..+..++ +++
T Consensus 82 ~~ydvQliGg~~Lh~----G~Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~l-GLt 153 (896)
T PRK13104 82 RHFDVQLIGGMVLHE----GNIAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFL-GLT 153 (896)
T ss_pred CcchHHHhhhhhhcc----CccccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhccc-Cce
Confidence 688888877666544 458999999999999999999776543 359999999999999999999999887 799
Q ss_pred EEEEEcCchhhhh-hccCCcEEEeCchhH-HHhhhccccccC-----CceeEEEEechhhHh
Q psy11867 205 VRYAVRGENLERN-KKITEQIIIGTPGKV-LDWGLKYRFFDL-----SKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~~~IlV~Tp~~l-~~~~~~~~~~~~-----~~~~~lViDEah~l~ 259 (399)
+.+..+|...... ....++|+||||++| .+++...-.+++ +.+.++|+||||.|+
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999998765433 345789999999999 888765534444 689999999999885
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=4.4e-22 Score=201.53 Aligned_cols=254 Identities=16% Similarity=0.160 Sum_probs=165.7
Q ss_pred CCChHHHHHHhhhhhcCCC--CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 124 YAPSKIQETALPTLLADPP--HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g--~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
..++|+|.+|+..++.. | +..++++|||+|||++.+..+. .+. .++|||||+.+|+.|+.+.+.++... .
T Consensus 254 ~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~-~l~-----k~tLILvps~~Lv~QW~~ef~~~~~l-~ 325 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAAC-TVK-----KSCLVLCTSAVSVEQWKQQFKMWSTI-D 325 (732)
T ss_pred CCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHH-HhC-----CCEEEEeCcHHHHHHHHHHHHHhcCC-C
Confidence 46899999999999864 3 5789999999999999876554 332 34999999999999999999988532 2
Q ss_pred CcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc-------ccccCCceeEEEEechhhHhhcCCchHHHHHHHHh
Q psy11867 202 DLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY-------RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR 274 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~-------~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~ 274 (399)
...+....|+.... ......|+|+|+..+.....+. ..+.-..++++|+||||++.+. ....++..
T Consensus 326 ~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-----~fr~il~~ 398 (732)
T TIGR00603 326 DSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-----MFRRVLTI 398 (732)
T ss_pred CceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-----HHHHHHHh
Confidence 33344444432111 1123579999999875431111 1222356889999999998542 23334554
Q ss_pred CCCCCcEEEEEeeCChh--HHHHHHhhCCCCeEEeccccc----ccccceeEEEEEeCC---------------------
Q psy11867 275 LPSDCQIMLFSATYDKE--VMEFAQDMVPNPLIIKLKREE----ESLDNIKQHYVMCKN--------------------- 327 (399)
Q Consensus 275 l~~~~q~l~~SAT~~~~--v~~~~~~~~~~p~~i~~~~~~----~~~~~i~~~~~~~~~--------------------- 327 (399)
+. ....+++|||.... ....+ .++.+|..+...-.+ .-+......-++|+-
T Consensus 399 l~-a~~RLGLTATP~ReD~~~~~L-~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~ 476 (732)
T TIGR00603 399 VQ-AHCKLGLTATLVREDDKITDL-NFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYV 476 (732)
T ss_pred cC-cCcEEEEeecCcccCCchhhh-hhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhh
Confidence 43 44579999997521 11112 122344443332111 111122222222221
Q ss_pred -hhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcccC
Q psy11867 328 -IDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG-EFKIYS 399 (399)
Q Consensus 328 -~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G-~~~ILV 399 (399)
...|+..+..+++.+ ...++||||++...++.++..| + +..+||++++.+|..++++|+.| .+++||
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 124666666676654 5579999999999999998887 2 56799999999999999999975 778775
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=7.6e-22 Score=209.25 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=154.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC----cHHHHHHHHHHHHH-HhccCCCcEEEEEEcCchhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP----TYELAIQIGEVVAK-MGKHITDLSVRYAVRGENLER 216 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P----t~~La~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 216 (399)
++.++++|+||||||. .+|.+..-........+++.-| +++||.|+.+++.. ++.. +.+.+... .
T Consensus 89 ~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~-----VGY~vrf~---~ 158 (1294)
T PRK11131 89 HQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGC-----VGYKVRFN---D 158 (1294)
T ss_pred CCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce-----eceeecCc---c
Confidence 5788899999999998 5674332211111123333446 56888888887764 3322 22322222 2
Q ss_pred hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechh-hHhhcCCch-HHHHHHHHhCCCCCcEEEEEeeCChhHHH
Q psy11867 217 NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD-VMIATQGHQ-DFSIRIQKRLPSDCQIMLFSATYDKEVME 294 (399)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah-~l~~~~~~~-~~~~~i~~~l~~~~q~l~~SAT~~~~v~~ 294 (399)
......+|+|+|||+|++.+... ..++++++||||||| ++++. ++. ..+..++.. .++.|+|+||||++. ..
T Consensus 159 ~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~-DfLLg~Lk~lL~~-rpdlKvILmSATid~--e~ 232 (1294)
T PRK11131 159 QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNI-DFILGYLKELLPR-RPDLKVIITSATIDP--ER 232 (1294)
T ss_pred ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCcccccccc-chHHHHHHHhhhc-CCCceEEEeeCCCCH--HH
Confidence 22345789999999999987643 348999999999999 56654 333 223333222 246899999999974 46
Q ss_pred HHHhhCCCCeEEecccccccccceeEEEEEeCCh-----hhHHHHHHHHh---ccCCCCcEEEEecchHhHHHHHHHHHH
Q psy11867 295 FAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI-----DEKFEAVSNIY---GVVTIGQAMIFCHTRKTAAWLAEKMSK 366 (399)
Q Consensus 295 ~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~ll---~~~~~~k~IIF~~s~~~a~~l~~~L~~ 366 (399)
+.+.+...|+ +.+.... ..+.++|..+... .+....+...+ .....+.+||||+++++++.+++.|.+
T Consensus 233 fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 233 FSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 6666655564 4443221 2355666654321 12223332222 223458899999999999999999998
Q ss_pred CCCe---EEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 367 EGLN---VGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 367 ~g~~---v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+++ +..+||+|++++|..+++. .|..+|||
T Consensus 309 ~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIV 342 (1294)
T PRK11131 309 LNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVL 342 (1294)
T ss_pred cCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEE
Confidence 7654 7889999999999999986 47777775
No 84
>KOG0352|consensus
Probab=99.89 E-value=3e-23 Score=191.08 Aligned_cols=278 Identities=15% Similarity=0.210 Sum_probs=186.0
Q ss_pred HHHHHHHH-cCCCC-ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 113 ELLKGVYE-MGFYA-PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 113 ~l~~~l~~-~g~~~-p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
.+.++|++ +|+.. -++.|++|+..+..+ .+||.++.|||+||++||.+|.|.. +...||++|..+|.+++.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~-k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKR-KCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhc-cCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHH
Confidence 34556665 57654 478999999999987 7999999999999999999999843 236899999999999999
Q ss_pred HHHHHHhccCCCcEEEEEEcCc--hhhhhh--ccCCcEEEeCchhHHHhhhc---cccccCCceeEEEEechhhHhhcC-
Q psy11867 191 EVVAKMGKHITDLSVRYAVRGE--NLERNK--KITEQIIIGTPGKVLDWGLK---YRFFDLSKIKVFVLDEADVMIATQ- 262 (399)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~IlV~Tp~~l~~~~~~---~~~~~~~~~~~lViDEah~l~~~~- 262 (399)
+.+.++--.+..++........ -+-... +....++.-||+.-..-... +....-..+.++|+||||+....+
T Consensus 79 DHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGH 158 (641)
T KOG0352|consen 79 DHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGH 158 (641)
T ss_pred HHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhcc
Confidence 9999886554444433322111 111111 23346999999875332111 011223468999999999986421
Q ss_pred CchHHHHHHHH--hCCCCCcEEEEEeeCChhHHHHHH--hhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 263 GHQDFSIRIQK--RLPSDCQIMLFSATYDKEVMEFAQ--DMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 263 ~~~~~~~~i~~--~l~~~~q~l~~SAT~~~~v~~~~~--~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
.|......+-. ..-+...-+.++||-+..|++.+- ..+++|+-+.-.+.. ..|+-....+-....+-+..|.++
T Consensus 159 DFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NLFYD~~~K~~I~D~~~~LaDF 236 (641)
T KOG0352|consen 159 DFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNLFYDNHMKSFITDCLTVLADF 236 (641)
T ss_pred ccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhhhHHHHHHHHhhhHhHhHHHH
Confidence 24444433322 122467789999999988876543 345677665322111 111111011111112233334443
Q ss_pred hccC----------C---CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVV----------T---IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~----------~---~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.... + .|-.||||.|++.|+++|-.|...|+++..||+|+...+|..+.+.|.+|++.|+|
T Consensus 237 ~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 237 SSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 3211 1 13479999999999999999999999999999999999999999999999999975
No 85
>KOG0354|consensus
Probab=99.89 E-value=2.1e-21 Score=193.26 Aligned_cols=173 Identities=17% Similarity=0.068 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.+.......--+...++.+|.+..-..| |+|+|+++|||+|||.++...++.++.... ..++|+++||+-|+.|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL---gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL---GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-KGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh---cCCeEEEeecCCCccchHHHHHHHHHhcCC-cceEEEeeCCchHHHHH
Confidence 33444444333445689999999998888 499999999999999999999999988764 47899999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhh---hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLER---NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQD 266 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~ 266 (399)
...+..++.+ -.+....+|..... ......+|+|+||+.|.+.+.....-.++.+.++||||||+-.....+..
T Consensus 123 ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 123 IACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 8888887755 23333333322111 22446789999999998886654444579999999999999765434444
Q ss_pred HHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 267 FSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 267 ~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
.+..++..-....|+|++|||..
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG 222 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPG 222 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCC
Confidence 44445544444559999999954
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=6.2e-22 Score=194.52 Aligned_cols=257 Identities=21% Similarity=0.221 Sum_probs=166.5
Q ss_pred CCCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 123 FYAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
...|+++|.+|+..+.+. .++..++++|||+|||..++..+-.... .+||||||++|+.|+.+.+.+.....
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 347999999999999872 1488999999999999988766553322 29999999999999987777765331
Q ss_pred CCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCc
Q psy11867 201 TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q 280 (399)
......++....... ..|.|+|.+.+.... ....+....++++|+||||++.+. .+.. +...+.....
T Consensus 108 ---~~~g~~~~~~~~~~~---~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~-~~~~----~~~~~~~~~~ 175 (442)
T COG1061 108 ---DEIGIYGGGEKELEP---AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAP-SYRR----ILELLSAAYP 175 (442)
T ss_pred ---cccceecCceeccCC---CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcH-HHHH----HHHhhhcccc
Confidence 112223332221111 369999999987641 113344557999999999998653 3333 3333332222
Q ss_pred EEEEEeeCChhH---HHHHHhhCCCCeEEeccccc----ccccceeEEEEEe----------------------------
Q psy11867 281 IMLFSATYDKEV---MEFAQDMVPNPLIIKLKREE----ESLDNIKQHYVMC---------------------------- 325 (399)
Q Consensus 281 ~l~~SAT~~~~v---~~~~~~~~~~p~~i~~~~~~----~~~~~i~~~~~~~---------------------------- 325 (399)
++++|||.+..- ...... ..+|+.......+ .-+.......+.+
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~-~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFD-LIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLR 254 (442)
T ss_pred eeeeccCceeecCCchhHHHH-hcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 899999965221 011111 1223333322111 0111111111111
Q ss_pred ---------CChhhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 326 ---------KNIDEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 326 ---------~~~~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
.....+...+..++..+ ...+++|||.+..++..++..|...|. +..+.|+.+..+|..+++.|+.|.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 01122344444455544 356999999999999999999988887 9999999999999999999999999
Q ss_pred cccC
Q psy11867 396 KIYS 399 (399)
Q Consensus 396 ~ILV 399 (399)
++||
T Consensus 334 ~~lv 337 (442)
T COG1061 334 KVLV 337 (442)
T ss_pred CEEE
Confidence 9886
No 87
>KOG0353|consensus
Probab=99.88 E-value=4.8e-22 Score=180.75 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=203.9
Q ss_pred ccCCCCHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 106 EALHLKPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 106 ~~~~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
++++.+.....-|+. +....++|.|..+|+..++ |.++++..|||.||++||.+|++. ....+|++||...
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma--~ed~~lil~tgggkslcyqlpal~------adg~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMA--GEDAFLILPTGGGKSLCYQLPALC------ADGFALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhc--cCceEEEEeCCCccchhhhhhHHh------cCCceEeechhHH
Confidence 355666666666664 4567899999999999999 799999999999999999999983 3456999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcC-chhhhh---hccCCcEEEeCchhHHHh---hhc-cccccCCceeEEEEechh
Q psy11867 185 LAIQIGEVVAKMGKHITDLSVRYAVRG-ENLERN---KKITEQIIIGTPGKVLDW---GLK-YRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 185 La~Q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~IlV~Tp~~l~~~---~~~-~~~~~~~~~~~lViDEah 256 (399)
|+..+.-++++++....-++....-.. ...+.. ......++..||+.+... +.+ .+.+....+.++.+||+|
T Consensus 146 lmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevh 225 (695)
T KOG0353|consen 146 LMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVH 225 (695)
T ss_pred HHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeeccee
Confidence 999999899998754322221110000 001111 123446999999998543 111 134457789999999999
Q ss_pred hHhhcC-CchHHH--HHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeC-ChhhHH
Q psy11867 257 VMIATQ-GHQDFS--IRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCK-NIDEKF 332 (399)
Q Consensus 257 ~l~~~~-~~~~~~--~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-~~~~k~ 332 (399)
+-...+ .|+... ..++++.-+...+++++||-++.+...++.++--...+.+.. .-..+++...++.-+ +.++-.
T Consensus 226 ccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp~n~dd~~ 304 (695)
T KOG0353|consen 226 CCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKPGNEDDCI 304 (695)
T ss_pred ehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCCCChHHHH
Confidence 975421 133222 245566567889999999999888887777663322222221 123455555554433 335555
Q ss_pred HHHHHHhccCCCC-cEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 333 EAVSNIYGVVTIG-QAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 333 ~~l~~ll~~~~~~-k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.+..+++....+ ..||||-+++.|+.++..|+.+|+.+..||+.|.+.+|.-+-+.|-.|+++|+|
T Consensus 305 edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqviv 372 (695)
T KOG0353|consen 305 EDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIV 372 (695)
T ss_pred HHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEE
Confidence 6666666655444 579999999999999999999999999999999999999999999999999986
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.7e-21 Score=195.42 Aligned_cols=264 Identities=17% Similarity=0.165 Sum_probs=182.6
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHH-HhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTML-SRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il-~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.|. .|+++|.-..-.+.. | -|+.++||+|||++|.+|++ ..+ .+ ..+-|++||..||.|.++++..+...
T Consensus 78 lg~-~~~dvQlig~l~L~~--G--~Iaem~TGeGKTLva~lpa~l~aL-~G---~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHE--G--KIAEMKTGEGKTLVATLPAYLNAL-TG---KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCC-CCCccHHHhhHHhcC--C--chhhhhcCCCcHHHHHHHHHHHHH-cC---CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 344 789999988876654 3 49999999999999999996 444 32 23779999999999999999999988
Q ss_pred CCCcEEEEEEcCchhhhhh-ccCCcEEEeCchhH-HHhhhcccc-----ccCCceeEEEEechhhHhhcC----------
Q psy11867 200 ITDLSVRYAVRGENLERNK-KITEQIIIGTPGKV-LDWGLKYRF-----FDLSKIKVFVLDEADVMIATQ---------- 262 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~IlV~Tp~~l-~~~~~~~~~-----~~~~~~~~lViDEah~l~~~~---------- 262 (399)
+ ++++.+..++....... ...++|+++||++| .+++..... ..++.+.++||||||.|+=..
T Consensus 149 L-Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 7 89999999886654333 45689999999999 888754432 246789999999999875110
Q ss_pred -----CchHHHHHHHHhCCC--------CC--------------------------------------------------
Q psy11867 263 -----GHQDFSIRIQKRLPS--------DC-------------------------------------------------- 279 (399)
Q Consensus 263 -----~~~~~~~~i~~~l~~--------~~-------------------------------------------------- 279 (399)
........+...+.. ..
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 011112222232211 11
Q ss_pred -----------------------------------------------------------cEEEEEeeCChhHHHHHHhhC
Q psy11867 280 -----------------------------------------------------------QIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 280 -----------------------------------------------------------q~l~~SAT~~~~v~~~~~~~~ 300 (399)
++.+||.|......++...|-
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 387 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN 387 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC
Confidence 223333333333333332222
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCC
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGEL 378 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 378 (399)
.+-+ .+.. +.........-........|..++.+.+.. ....|+||||+|++.++.|+..|.+.|+++..+||.
T Consensus 388 l~vv--~IPt-nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 388 LDVV--VIPT-NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCEE--EcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 2211 1111 111111111222334557789999988865 455799999999999999999999999999999996
Q ss_pred CHHHHHHHHHHHhcCCCcccC
Q psy11867 379 TVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 379 ~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.+|++.+..|+.|...|+|
T Consensus 464 -q~eREa~Iia~Ag~~g~VtI 483 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTI 483 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEE
Confidence 88999999999999999886
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.7e-21 Score=197.16 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=126.5
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEE
Q psy11867 106 EALHLKPELLKGVY-----EMGFYAP---SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVL 177 (399)
Q Consensus 106 ~~~~l~~~l~~~l~-----~~g~~~p---~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~l 177 (399)
+.+.+...+.+++. .+||..| +|+|.+++|.++. +++++++++||+|||++|++|++..+.... .++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l--~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM--HKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc--CCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeE
Confidence 56778899998887 6899999 9999999999998 699999999999999999999998775432 389
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh-ccCCcEEEeCchhH-HHhhhccccccCC-------cee
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK-KITEQIIIGTPGKV-LDWGLKYRFFDLS-------KIK 248 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IlV~Tp~~l-~~~~~~~~~~~~~-------~~~ 248 (399)
||+||++||.|+.+++..++.++ ++++.+..||.....+. ...++|+||||++| .+++.. +.+.++ .+.
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~~ 217 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGFY 217 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhC-CCCCcCHHHhhccccc
Confidence 99999999999999999999887 78999999998876554 44689999999999 998654 334433 568
Q ss_pred EEEEechhhHh
Q psy11867 249 VFVLDEADVMI 259 (399)
Q Consensus 249 ~lViDEah~l~ 259 (399)
++||||||.|+
T Consensus 218 ~~IIDEADsmL 228 (970)
T PRK12899 218 FAIIDEVDSIL 228 (970)
T ss_pred EEEEechhhhh
Confidence 99999999986
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=2.3e-19 Score=185.65 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
.+......+.+.--+.-|+-|..||..+.++ .+.|-++||..|.|||-+++-++...+.. +.++.+||||.-|
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlL 655 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLL 655 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHh
Confidence 4455555565543347899999999999765 47899999999999999999888877765 4679999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCchh-------hhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 186 AIQIGEVVAKMGKHITDLSVRYAVRGENL-------ERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 186 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|+|.++.|+.-..++ .+++....+-... .....+..+|||||.. |++ +.+.+++++++||||=|++
T Consensus 656 A~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-LL~-----kdv~FkdLGLlIIDEEqRF 728 (1139)
T COG1197 656 AQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-LLS-----KDVKFKDLGLLIIDEEQRF 728 (1139)
T ss_pred HHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-hhC-----CCcEEecCCeEEEechhhc
Confidence 999999999988877 5676665544332 2223567899999985 332 4677899999999999997
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
.- .+.+ -++.+..+.-++-+|||.=+...++.-.-++|-..|...+.+. -.++.++....+.--+...++++
T Consensus 729 GV--k~KE----kLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~~ireAI~REl 800 (1139)
T COG1197 729 GV--KHKE----KLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDLLIREAILREL 800 (1139)
T ss_pred Cc--cHHH----HHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChHHHHHHHHHHH
Confidence 53 2343 3455557888999999966666777777778877776665443 22444444333333333444444
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+ +|++-..+|..+..+.+++.|+.. ..++++.||.|+..+-+.++..|.+|+++|||
T Consensus 801 ~R---gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv 860 (1139)
T COG1197 801 LR---GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLV 860 (1139)
T ss_pred hc---CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEE
Confidence 33 489999999999999999999987 56899999999999999999999999999997
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=2.8e-19 Score=190.48 Aligned_cols=242 Identities=18% Similarity=0.168 Sum_probs=154.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
++.++++|+||||||. .+|.+..-.......++++.-|.|--|..+.+.+.+....-.+-.+.+.+...+. ....
T Consensus 82 ~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~---~s~~ 156 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQ---VSSN 156 (1283)
T ss_pred CceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcc---cCCC
Confidence 5788999999999998 4565433222122335566668887777766555544322113344443333322 2345
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechh-hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD-VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
.+|.++|+|+|+..+... ..+.++++||||||| ++++.......+..++.. .++.|+|+||||++. ..+.+.+.
T Consensus 157 T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld~--~~fa~~F~ 231 (1283)
T TIGR01967 157 TLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATIDP--ERFSRHFN 231 (1283)
T ss_pred ceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcCH--HHHHHHhc
Confidence 679999999999987553 348899999999999 577653333334455433 357899999999974 46666655
Q ss_pred CCCeEEecccccccccceeEEEEEeCCh-----hhHHHHHHHHhc---cCCCCcEEEEecchHhHHHHHHHHHHCC---C
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNI-----DEKFEAVSNIYG---VVTIGQAMIFCHTRKTAAWLAEKMSKEG---L 369 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~ll~---~~~~~k~IIF~~s~~~a~~l~~~L~~~g---~ 369 (399)
..|+ +.+.... ..+..+|..+... ..+...+...+. ....+.+||||++.++++.+++.|.+.+ .
T Consensus 232 ~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~ 307 (1283)
T TIGR01967 232 NAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHT 307 (1283)
T ss_pred CCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCc
Confidence 5554 3333211 2244455433211 123333333222 1245899999999999999999998764 4
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 370 NVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 370 ~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+..+||+|++++|..+++.+ +..+|||
T Consensus 308 ~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVL 335 (1283)
T TIGR01967 308 EILPLYARLSNKEQQRVFQPH--SGRRIVL 335 (1283)
T ss_pred EEEeccCCCCHHHHHHHhCCC--CCceEEE
Confidence 688999999999999996654 2345553
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.2e-19 Score=185.60 Aligned_cols=263 Identities=15% Similarity=0.145 Sum_probs=182.8
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
..|| .|-++|++|+-.+-+ |.+|+++||||+|||++...++...+..+ .+++|.+|.++|..|.++.+......
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler--~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILER--GESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhC--CCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhh
Confidence 3555 688999999999988 79999999999999999988887776543 34999999999999999888775443
Q ss_pred CCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
. .-.+....|...+. ....++|.|.+-|-+++.. +...+..+.+||+||+|.|.+. .....+..++..+|...
T Consensus 189 v-~~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 189 V-ADMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIILLPDHV 261 (1041)
T ss_pred h-hhhccceecceeeC----CCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeecccc-ccchhHHHHHHhcCCCC
Confidence 2 11223445555443 3356999999988888655 4667999999999999999874 44445567778889999
Q ss_pred cEEEEEeeCChhH--HHHHHhhCCCCeEEecccccccccceeEEEEEeC-------Chhh--------------------
Q psy11867 280 QIMLFSATYDKEV--MEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCK-------NIDE-------------------- 330 (399)
Q Consensus 280 q~l~~SAT~~~~v--~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-------~~~~-------------------- 330 (399)
+++++|||+++.. ...+...-..|..+....... ..+.+++. +. +...
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp--vPL~~~~~-~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRP--VPLEHFVY-VGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCC--CCeEEEEe-cCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 9999999999763 223332223444332221111 11111111 10 0000
Q ss_pred ---------------------------HHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC----------------
Q psy11867 331 ---------------------------KFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE---------------- 367 (399)
Q Consensus 331 ---------------------------k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~---------------- 367 (399)
+...+.+.+.....-++|+||-+++.|+..+..+...
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 0011222222233358999999999999998887631
Q ss_pred ------------CC-------------eEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 368 ------------GL-------------NVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 368 ------------g~-------------~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
+. .++++|+||-+..|..+.+.|..|-++||
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvv 474 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVV 474 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEE
Confidence 11 25689999999999999999999999987
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=3.2e-19 Score=177.55 Aligned_cols=235 Identities=17% Similarity=0.212 Sum_probs=147.2
Q ss_pred EEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hh
Q psy11867 146 IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NK 218 (399)
Q Consensus 146 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 218 (399)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +..+....++..... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 467999999999998776655543 4579999999999999999998754 234445555433211 12
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC----CchHHHHHHHHhCCCCCcEEEEEeeCChhHHH
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ----GHQDFSIRIQKRLPSDCQIMLFSATYDKEVME 294 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~----~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~ 294 (399)
.+..+|+|||+..+. ..+++++++||||+|...-.+ .+...-..+......+.+++++|||.+.+...
T Consensus 74 ~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 346789999998663 236789999999999864221 11111112223333588999999996544433
Q ss_pred HHHhhCCCCeEEecccccccccceeEEEEEeCCh-------hhHHHHHHHHhccCCCCcEEEEecchHh-----------
Q psy11867 295 FAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI-------DEKFEAVSNIYGVVTIGQAMIFCHTRKT----------- 356 (399)
Q Consensus 295 ~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~-------~~k~~~l~~ll~~~~~~k~IIF~~s~~~----------- 356 (399)
.+.. .....+.+.............++..... ..-.+.+.+.++ .++++|||+|++.-
T Consensus 146 ~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~ 221 (505)
T TIGR00595 146 NAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGY 221 (505)
T ss_pred HHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcC
Confidence 3321 1111222221111111111122222111 111222222222 23589999877643
Q ss_pred -------------------------------------------------HHHHHHHHHHC--CCeEEEEcCCCCHHHH--
Q psy11867 357 -------------------------------------------------AAWLAEKMSKE--GLNVGLLSGELTVEQR-- 383 (399)
Q Consensus 357 -------------------------------------------------a~~l~~~L~~~--g~~v~~lhg~~~~~~R-- 383 (399)
++++++.|.+. +.++..+|++++...+
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAH 301 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHH
Confidence 58888888876 7899999999988776
Q ss_pred HHHHHHHhcCCCcccC
Q psy11867 384 LSILDRFREGEFKIYS 399 (399)
Q Consensus 384 ~~v~~~F~~G~~~ILV 399 (399)
+.+++.|++|+.+|||
T Consensus 302 ~~~l~~f~~g~~~ILV 317 (505)
T TIGR00595 302 EALLNQFANGKADILI 317 (505)
T ss_pred HHHHHHHhcCCCCEEE
Confidence 9999999999999986
No 94
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=4.6e-19 Score=155.49 Aligned_cols=185 Identities=30% Similarity=0.448 Sum_probs=144.6
Q ss_pred HcCCCCChHHHHHHhhhhhcCCC-CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPP-HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g-~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..++..|+++|.++++.++. . +++++.++||+|||.++..+++..+.... ..+++|++|+..++.|+.+.+..++.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~--~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS--GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc--CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35688999999999999997 5 89999999999999999999998887642 45799999999999999999998876
Q ss_pred cCCCcEEEEEEcCchh-h--hhhccCC-cEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh
Q psy11867 199 HITDLSVRYAVRGENL-E--RNKKITE-QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR 274 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~--~~~~~~~-~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~ 274 (399)
... .......++... . ....... +++++|++.+.+...... .....++++|+||+|.+... .+...+..+...
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~ 156 (201)
T smart00487 80 SLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDG-GFGDQLEKLLKL 156 (201)
T ss_pred cCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHh
Confidence 532 222333333321 1 1112333 899999999998865433 56778899999999999752 577777788888
Q ss_pred CCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc
Q psy11867 275 LPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310 (399)
Q Consensus 275 l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~ 310 (399)
+++..+++++|||.++........+..+...+....
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888999999999999999999888888776665543
No 95
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=2.4e-18 Score=180.18 Aligned_cols=269 Identities=14% Similarity=0.155 Sum_probs=166.6
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|.|+|..++..++......+++...+|.|||..+.+.+-..+..+ ...++|||||. .|..|+..++.+.. ++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF----~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF----NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh----CCC
Confidence 5999999999887765456899999999999998876665554443 44579999998 89999988886533 222
Q ss_pred EEEEEcCchhh--h---hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-CC
Q psy11867 205 VRYAVRGENLE--R---NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SD 278 (399)
Q Consensus 205 ~~~~~~~~~~~--~---~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~ 278 (399)
.....++.... . ......+++|+|.+.+...-.....+.-..++++|+||||++-............+..+. ..
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 22222221110 0 112245799999987764211112233347899999999998532111122233333333 34
Q ss_pred CcEEEEEeeCCh-------------------hHHHH------------------------------HHhhCCC-------
Q psy11867 279 CQIMLFSATYDK-------------------EVMEF------------------------------AQDMVPN------- 302 (399)
Q Consensus 279 ~q~l~~SAT~~~-------------------~v~~~------------------------------~~~~~~~------- 302 (399)
..++++|||.-. +...| +..++.+
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 578999999210 00000 0001100
Q ss_pred ----------------------------CeEEeccccc--ccccceeEEE-EE---------------------------
Q psy11867 303 ----------------------------PLIIKLKREE--ESLDNIKQHY-VM--------------------------- 324 (399)
Q Consensus 303 ----------------------------p~~i~~~~~~--~~~~~i~~~~-~~--------------------------- 324 (399)
++.++-.+.. ..+....+.+ ..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 0000000000 0000000000 00
Q ss_pred --------eCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHH-HCCCeEEEEcCCCCHHHHHHHHHHHhcC--
Q psy11867 325 --------CKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMS-KEGLNVGLLSGELTVEQRLSILDRFREG-- 393 (399)
Q Consensus 325 --------~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~~R~~v~~~F~~G-- 393 (399)
....+.|...|.++++.....|+||||+++.++..|++.|+ ..|+++..+||+|++.+|.++++.|+++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~ 545 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEED 545 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 00113467778888888778899999999999999999995 5699999999999999999999999984
Q ss_pred CCcccC
Q psy11867 394 EFKIYS 399 (399)
Q Consensus 394 ~~~ILV 399 (399)
..+|||
T Consensus 546 ~~~VLI 551 (956)
T PRK04914 546 GAQVLL 551 (956)
T ss_pred CccEEE
Confidence 588875
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.1e-19 Score=180.37 Aligned_cols=127 Identities=21% Similarity=0.193 Sum_probs=103.1
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+++|...--.+. +.-|+.++||.|||++|.+|++.....+ ..+.||+|+..||.|..+++..+..++ +++
T Consensus 82 ~~ydVQliGgl~L~----~G~IaEm~TGEGKTL~a~lp~~l~al~g---~~VhIvT~ndyLA~RD~e~m~~l~~~l-Gls 153 (908)
T PRK13107 82 RHFDVQLLGGMVLD----SNRIAEMRTGEGKTLTATLPAYLNALTG---KGVHVITVNDYLARRDAENNRPLFEFL-GLT 153 (908)
T ss_pred CcCchHHhcchHhc----CCccccccCCCCchHHHHHHHHHHHhcC---CCEEEEeCCHHHHHHHHHHHHHHHHhc-CCe
Confidence 68888887665554 4458999999999999999999777654 339999999999999999999999987 899
Q ss_pred EEEEEcCchhhhh-hccCCcEEEeCchhH-HHhhhcccccc-----CCceeEEEEechhhHh
Q psy11867 205 VRYAVRGENLERN-KKITEQIIIGTPGKV-LDWGLKYRFFD-----LSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~~~IlV~Tp~~l-~~~~~~~~~~~-----~~~~~~lViDEah~l~ 259 (399)
+.+..++...... ....++|+++||++| .+++..+-.+. .+.+.++||||||.++
T Consensus 154 v~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 154 VGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred EEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9988887655333 345789999999999 88866542333 3788999999999775
No 97
>KOG0948|consensus
Probab=99.81 E-value=5.6e-19 Score=172.81 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=184.2
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..+-|.|..||.-+-+ +..|+++|-|.+|||.++-.+|.+.+.. +.|++|-+|.++|..|-|+.+..-.+..
T Consensus 128 F~LDpFQ~~aI~Cidr--~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV--- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDR--GESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV--- 199 (1041)
T ss_pred cccCchHhhhhhhhcC--CceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc---
Confidence 3677999999998877 7999999999999999999988888765 3469999999999999999888765543
Q ss_pred EEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEE
Q psy11867 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~ 283 (399)
.+.+|...+.. ....+|.|.+.|.+++.+... -++.+.|+|+||+|.|-+.....- +..-+-.+|.+.++++
T Consensus 200 --GLMTGDVTInP----~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYMRDkERGVV-WEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 200 --GLMTGDVTINP----DASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYMRDKERGVV-WEETIILLPDNVRFVF 271 (1041)
T ss_pred --ceeecceeeCC----CCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhcccccccee-eeeeEEeccccceEEE
Confidence 34445444432 245899999999888766433 478999999999999987533222 2333456789999999
Q ss_pred EEeeCChhHHHHHHh---hCCCCeEEecccccccccceeEEEEE----------eCCh----hhHHH-------------
Q psy11867 284 FSATYDKEVMEFAQD---MVPNPLIIKLKREEESLDNIKQHYVM----------CKNI----DEKFE------------- 333 (399)
Q Consensus 284 ~SAT~~~~v~~~~~~---~~~~p~~i~~~~~~~~~~~i~~~~~~----------~~~~----~~k~~------------- 333 (399)
+|||+|+. .+|+.+ +-..|..+.......+ --|+|++ ++.. ++.+.
T Consensus 272 LSATiPNA-~qFAeWI~~ihkQPcHVVYTdyRPT---PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 272 LSATIPNA-RQFAEWICHIHKQPCHVVYTDYRPT---PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EeccCCCH-HHHHHHHHHHhcCCceEEeecCCCC---cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 99999976 344444 4466766544332221 1222222 2110 11111
Q ss_pred -------------------------HHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC---------------------
Q psy11867 334 -------------------------AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--------------------- 367 (399)
Q Consensus 334 -------------------------~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--------------------- 367 (399)
.+..++-.....|+|||+-+++.|+.+|-.|.+.
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 2222333334468999999999999999998762
Q ss_pred ------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 368 ------------------GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 368 ------------------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
...++++|||+-+--++-+.-.|.+|-++||
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvL 476 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVL 476 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHH
Confidence 1237899999999999999999999999887
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.80 E-value=1.2e-18 Score=186.20 Aligned_cols=270 Identities=15% Similarity=0.144 Sum_probs=156.5
Q ss_pred CCChHHHHHHhhhhhc---CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 124 YAPSKIQETALPTLLA---DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~---~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
..++++|.+|+..+.. ...++.+++++||||||.+++. ++.++.......++|||+|+.+|+.|..+.++.+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 3589999999988763 2257899999999999987543 44444433455689999999999999999998874321
Q ss_pred CCcEEEEEEcCchhhh-hhccCCcEEEeCchhHHHhhhcc----ccccCCceeEEEEechhhHhhcC--------C----
Q psy11867 201 TDLSVRYAVRGENLER-NKKITEQIIIGTPGKVLDWGLKY----RFFDLSKIKVFVLDEADVMIATQ--------G---- 263 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~IlV~Tp~~l~~~~~~~----~~~~~~~~~~lViDEah~l~~~~--------~---- 263 (399)
........+...+.. .......|+|+|...+...+... ..+.+.++++||+||||+-.... .
T Consensus 491 -~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 -DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred -ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 111111111111111 11334679999999987654321 22457789999999999953100 0
Q ss_pred --chHHHHHHHHhCCCCCcEEEEEeeCChhHHH-------------HHH-hhCC---CCeEEecccc--------ccccc
Q psy11867 264 --HQDFSIRIQKRLPSDCQIMLFSATYDKEVME-------------FAQ-DMVP---NPLIIKLKRE--------EESLD 316 (399)
Q Consensus 264 --~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~-------------~~~-~~~~---~p~~i~~~~~--------~~~~~ 316 (399)
+......++... +...|+||||....... .+. .++. .|..+..... .....
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 122334455543 35789999995422111 111 1111 1222221000 00000
Q ss_pred ceeE---EE--EEeCCh--------hh------HH----HHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC------
Q psy11867 317 NIKQ---HY--VMCKNI--------DE------KF----EAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE------ 367 (399)
Q Consensus 317 ~i~~---~~--~~~~~~--------~~------k~----~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~------ 367 (399)
.... .+ ...+.. +. .. ..+.+.+.....+++||||.++++|+.+++.|.+.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 0000 00 000000 00 00 11222232233479999999999999999887653
Q ss_pred C---CeEEEEcCCCCHHHHHHHHHHHhcCCC-cccC
Q psy11867 368 G---LNVGLLSGELTVEQRLSILDRFREGEF-KIYS 399 (399)
Q Consensus 368 g---~~v~~lhg~~~~~~R~~v~~~F~~G~~-~ILV 399 (399)
+ ..+..+||+.+ ++..++++|++|.. +|||
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlV 761 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVV 761 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEE
Confidence 2 24667999985 56789999999987 4654
No 99
>KOG0947|consensus
Probab=99.78 E-value=3.6e-18 Score=171.04 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=181.0
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
++|-..|++||-.+.. |..|++.|+|.+|||+++-.++...- ....|++|-+|.++|..|-++.|+.-....
T Consensus 296 FelD~FQk~Ai~~ler--g~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv--- 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLER--GDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGDV--- 367 (1248)
T ss_pred CCccHHHHHHHHHHHc--CCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhcccc---
Confidence 3788999999999998 79999999999999999877665332 245679999999999999999998865543
Q ss_pred EEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEE
Q psy11867 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~ 283 (399)
...+|...+.. ...++|.|.+.|-+++.+. .--++++.+|||||+|.+.+. .....+..++-.+|...++|+
T Consensus 368 --gLlTGDvqinP----eAsCLIMTTEILRsMLYrg-adliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 368 --GLLTGDVQINP----EASCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred --ceeecceeeCC----CcceEeehHHHHHHHHhcc-cchhhccceEEEeeeeecccc-cccccceeeeeeccccceEEE
Confidence 25556554433 3569999999999887653 334788999999999999765 344445677788999999999
Q ss_pred EEeeCChhHHHHHHhhCCC-CeEEecccc-ccccc---------------------------------------------
Q psy11867 284 FSATYDKEVMEFAQDMVPN-PLIIKLKRE-EESLD--------------------------------------------- 316 (399)
Q Consensus 284 ~SAT~~~~v~~~~~~~~~~-p~~i~~~~~-~~~~~--------------------------------------------- 316 (399)
+|||.|+.. +|+.+.-+. -..|.+... ...++
T Consensus 440 LSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 440 LSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 999999763 444443210 001111000 00000
Q ss_pred -----------ceeEEEE-------EeCChhh---HHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC--------
Q psy11867 317 -----------NIKQHYV-------MCKNIDE---KFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE-------- 367 (399)
Q Consensus 317 -----------~i~~~~~-------~~~~~~~---k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~-------- 367 (399)
+.++.+- ....... ....+.+.++...--|+||||-+++.|+..+..|...
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 0000000 0000001 1233444444444468999999999999999998651
Q ss_pred -------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 368 -------------------------------GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 368 -------------------------------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
-..++++|||+-+--++-+.-.|..|-++||
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVL 660 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVL 660 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEE
Confidence 1237899999999999999999999999997
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.78 E-value=2e-17 Score=167.48 Aligned_cols=262 Identities=23% Similarity=0.265 Sum_probs=179.6
Q ss_pred HHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 116 KGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 116 ~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
+.+.+.....|...|+-....++. |++.-+.||||.|||.--++..+... ..+.+++||+||+.|+.|+++.+++
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~r--g~SFaiiAPTGvGKTTfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVR--GKSFAIIAPTGVGKTTFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHc--CCceEEEcCCCCchhHHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHHH
Confidence 344444444999999999999999 79999999999999964443333222 2457899999999999999999999
Q ss_pred HhccCCCcEEEEEEcCc--------hhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-----
Q psy11867 196 MGKHITDLSVRYAVRGE--------NLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ----- 262 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~----- 262 (399)
++.......+...+.+. ..++...++.+|+|+|.+-|.... ..+.-.+++++++|++|.++...
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~---e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRF---EELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH---HHhcccCCCEEEEccHHHHHhccccHHH
Confidence 98776445544433332 122233567899999988665443 22222478999999999776322
Q ss_pred -----CchHHH-------HHHHHhC------------------------CCCCcEEEEEeeCChhH--HHHHHhhCCCCe
Q psy11867 263 -----GHQDFS-------IRIQKRL------------------------PSDCQIMLFSATYDKEV--MEFAQDMVPNPL 304 (399)
Q Consensus 263 -----~~~~~~-------~~i~~~l------------------------~~~~q~l~~SAT~~~~v--~~~~~~~~~~p~ 304 (399)
||.+.. ..+...+ .+..+++..|||..+.- ..+.+.. .
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL----l 300 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL----L 300 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH----h
Confidence 222211 1111111 13468899999976532 1222222 2
Q ss_pred EEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecc---hHhHHHHHHHHHHCCCeEEEEcCCCCHH
Q psy11867 305 IIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHT---RKTAAWLAEKMSKEGLNVGLLSGELTVE 381 (399)
Q Consensus 305 ~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s---~~~a~~l~~~L~~~g~~v~~lhg~~~~~ 381 (399)
.+.++.....+.||...|+.... .++ +.++++... .-.|||++. ++.|+.+++.|+..|+++..+|++
T Consensus 301 gFevG~~~~~LRNIvD~y~~~~~-~e~---~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~---- 371 (1187)
T COG1110 301 GFEVGSGGEGLRNIVDIYVESES-LEK---VVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE---- 371 (1187)
T ss_pred CCccCccchhhhheeeeeccCcc-HHH---HHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc----
Confidence 34555555667788888876622 333 333333332 247999999 999999999999999999999994
Q ss_pred HHHHHHHHHhcCCCcccC
Q psy11867 382 QRLSILDRFREGEFKIYS 399 (399)
Q Consensus 382 ~R~~v~~~F~~G~~~ILV 399 (399)
++..++.|..|+++|||
T Consensus 372 -~~~~le~F~~GeidvLV 388 (1187)
T COG1110 372 -KEEALEDFEEGEVDVLV 388 (1187)
T ss_pred -chhhhhhhccCceeEEE
Confidence 37789999999999996
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.77 E-value=4.3e-17 Score=147.16 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=176.8
Q ss_pred CChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 125 APSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
++++.|+.+-..++.. ...+.++.|-||+|||-...-.+-..+. .|.++.+.+|....+..++..+++-.. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~---~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS---N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc---c
Confidence 6889999888777643 3689999999999999764433333333 466799999999999999999988654 3
Q ss_pred cEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
..+...+|+.... ...+++|+|.-+|+..- +.++++||||+|.+.=. .-...-..+.+......-+|
T Consensus 171 ~~I~~Lyg~S~~~----fr~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 171 CDIDLLYGDSDSY----FRAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFS-DDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CCeeeEecCCchh----ccccEEEEehHHHHHHH--------hhccEEEEecccccccc-CCHHHHHHHHHhhcccCceE
Confidence 4555666554332 22579999998887652 35789999999997421 11222223444445677899
Q ss_pred EEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHH------HHHHHhccCC--CCcEEEEecch
Q psy11867 283 LFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFE------AVSNIYGVVT--IGQAMIFCHTR 354 (399)
Q Consensus 283 ~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~------~l~~ll~~~~--~~k~IIF~~s~ 354 (399)
++|||-++.++.-+..- +...+.+.......+-..-.++++.+-.+++. .|..+++... ..+++||+++.
T Consensus 238 ylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 99999887766544432 23334444443333344456777776655542 4666665543 36899999999
Q ss_pred HhHHHHHHHHHHC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 355 KTAAWLAEKMSKE-G-LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 355 ~~a~~l~~~L~~~-g-~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+..+.++..|++. + ..++.+|+. ...|.+.+++||+|++.+|+
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLi 360 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLI 360 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEE
Confidence 9999999999544 3 356899988 56899999999999999985
No 102
>KOG0950|consensus
Probab=99.75 E-value=9.9e-18 Score=168.76 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=180.6
Q ss_pred CCHHHHHH-HHHcCCCCChHHHHHHh--hhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 110 LKPELLKG-VYEMGFYAPSKIQETAL--PTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 110 l~~~l~~~-l~~~g~~~p~~iQ~~ai--~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
+++...+. .+..|....+.||.+|+ |.++. ++|.|..+||+.|||+++-+-++..+... ...++.+.|..+.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e--~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv 282 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLE--RKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIV 282 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhc--ccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehh
Confidence 34444443 34578899999999998 66664 89999999999999999998888776543 33489999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc-ccccCCceeEEEEechhhHhhcCCch
Q psy11867 187 IQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY-RFFDLSKIKVFVLDEADVMIATQGHQ 265 (399)
Q Consensus 187 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~-~~~~~~~~~~lViDEah~l~~~~~~~ 265 (399)
+.-...+..+.... ++.+....|...-. ......++.|||-++-..++... +.-++..++++|+||.|.+++. +..
T Consensus 283 ~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~-~rg 359 (1008)
T KOG0950|consen 283 QEKISALSPFSIDL-GFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK-GRG 359 (1008)
T ss_pred HHHHhhhhhhcccc-CCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc-ccc
Confidence 88888888888776 66766655443332 23445679999999876553221 2225778999999999999875 444
Q ss_pred HHHHHHHHh-----CCCCCcEEEEEeeCChh--HHHHHHhhC----CCCeEEecccccccccceeEEEEEeCChhhHHHH
Q psy11867 266 DFSIRIQKR-----LPSDCQIMLFSATYDKE--VMEFAQDMV----PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEA 334 (399)
Q Consensus 266 ~~~~~i~~~-----l~~~~q~l~~SAT~~~~--v~~~~~~~~----~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (399)
..+..++.. .....|+|+||||+++- +..+....+ ..|+... +.++-....+.. + +...
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~--------E~ik~G~~i~~~-~-r~~~ 429 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLK--------EYIKPGSLIYES-S-RNKV 429 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccch--------hccCCCcccccc-h-hhHH
Confidence 444433322 23346799999999863 444433221 1121110 000000000000 0 1112
Q ss_pred HHHHh--------------------ccCCC-CcEEEEecchHhHHHHHHHHHH---------------------------
Q psy11867 335 VSNIY--------------------GVVTI-GQAMIFCHTRKTAAWLAEKMSK--------------------------- 366 (399)
Q Consensus 335 l~~ll--------------------~~~~~-~k~IIF~~s~~~a~~l~~~L~~--------------------------- 366 (399)
+.++- ..... .++||||++++.|+.+|..+..
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 22211 11122 3599999999999999876654
Q ss_pred -----------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 367 -----------EGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 367 -----------~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+.++++|+|++.++|+.+...||+|.+.|++
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~ 553 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLV 553 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEE
Confidence 024589999999999999999999999999875
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.73 E-value=1.4e-16 Score=165.70 Aligned_cols=262 Identities=18% Similarity=0.196 Sum_probs=167.9
Q ss_pred CChHHHHHHhhhhhcC-CCC-cEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 125 APSKIQETALPTLLAD-PPH-NMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~-~g~-~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
.+++.|..++..++.. ... .+++.||||+|||.+.+.++...+.. .....+++++.|++.++.++++.++.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3489999999988765 234 89999999999999999999988876 45678999999999999999999998765431
Q ss_pred CcEEEEEEcCchhhhh------------------hccCCcEEEeCchhHHHhhhcccccc-CC--ceeEEEEechhhHhh
Q psy11867 202 DLSVRYAVRGENLERN------------------KKITEQIIIGTPGKVLDWGLKYRFFD-LS--KIKVFVLDEADVMIA 260 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~------------------~~~~~~IlV~Tp~~l~~~~~~~~~~~-~~--~~~~lViDEah~l~~ 260 (399)
... .. ..+...... ......+.++||-...........+. +. -...+|+||+|.+.+
T Consensus 275 ~~~-~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 275 VIG-KS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred ccc-cc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 111 10 111111000 01112355556555444211111111 11 236899999999865
Q ss_pred cCCchHHHHHHHHhCC-CCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccc---ccccceeEEEEEeCChhhHH--HH
Q psy11867 261 TQGHQDFSIRIQKRLP-SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREE---ESLDNIKQHYVMCKNIDEKF--EA 334 (399)
Q Consensus 261 ~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~---~~~~~i~~~~~~~~~~~~k~--~~ 334 (399)
.. ....+..++..+. ....+|++|||+|+.....+.........+...... ..-..+.+....+ ..... ..
T Consensus 353 ~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~ 429 (733)
T COG1203 353 ET-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVD--VEDGPQEEL 429 (733)
T ss_pred cc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchh--hhhhhhHhh
Confidence 32 3444444444442 478899999999999998888877654444332110 0001111111111 01110 11
Q ss_pred HHHHh-ccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHh
Q psy11867 335 VSNIY-GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFR 391 (399)
Q Consensus 335 l~~ll-~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~ 391 (399)
..... .....++++|.|||++.|..+++.|+..+.++..+||.++..+|.+.+++++
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHH
Confidence 11111 2223468999999999999999999998878999999999999999999655
No 104
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.68 E-value=6.7e-15 Score=156.21 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhh---hcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTL---LADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~l---l~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
+++.+.+.+...||. +++.|.+.+..+ +.+ ++++++.||||+|||++|++|++.... .+.+++|.+||++|.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~-~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq 305 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTH-SEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQ 305 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhcc-CCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHH
Confidence 445677778788886 889999866643 233 799999999999999999999988765 234799999999999
Q ss_pred HHHHH-HHHHHh
Q psy11867 187 IQIGE-VVAKMG 197 (399)
Q Consensus 187 ~Q~~~-~~~~~~ 197 (399)
.|+.. .+..+.
T Consensus 306 ~Ql~~~~~~~l~ 317 (850)
T TIGR01407 306 SQLLEKDIPLLN 317 (850)
T ss_pred HHHHHHHHHHHH
Confidence 99854 444443
No 105
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.6e-15 Score=125.29 Aligned_cols=141 Identities=31% Similarity=0.519 Sum_probs=103.2
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hc
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KK 219 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 219 (399)
+++++.++||+|||..++..+...... ....+++|++|++.++.|+.+.+...... ...+....+....... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhc
Confidence 478999999999999999888887765 24568999999999999999998887754 4555655555433322 24
Q ss_pred cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeC
Q psy11867 220 ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 220 ~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~ 288 (399)
...+|+++|++.+........ ......+++|+||+|.+.... ................+++++|||.
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 567899999999987654332 345678899999999997542 2222122334446788999999994
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=3.7e-15 Score=152.01 Aligned_cols=261 Identities=15% Similarity=0.150 Sum_probs=176.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|++.|..+.-.+.. |+ |+...||+|||+++.+|++.....+ ..+-+++||.-||.|-++.+..+...+ ++
T Consensus 79 ~~~~dvQlig~l~l~~--G~--iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl 150 (796)
T PRK12906 79 LRPFDVQIIGGIVLHE--GN--IAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELYRWL-GL 150 (796)
T ss_pred CCCchhHHHHHHHHhc--CC--cccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHHHhc-CC
Confidence 3799999988776654 44 9999999999999999998777654 448999999999999999999999987 79
Q ss_pred EEEEEEcCchh-hhhhccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHhhcC------------Cc
Q psy11867 204 SVRYAVRGENL-ERNKKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMIATQ------------GH 264 (399)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~~~~------------~~ 264 (399)
++.+..++... .+.....++|+.+|...| .+++..+ .....+.+.+.||||+|.++=.. ..
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 99888776543 344456789999999887 3333322 11234678999999999553000 00
Q ss_pred ---hHHHHHHHHhCCC----------------------------------------------------------------
Q psy11867 265 ---QDFSIRIQKRLPS---------------------------------------------------------------- 277 (399)
Q Consensus 265 ---~~~~~~i~~~l~~---------------------------------------------------------------- 277 (399)
......+...+..
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 0000001000000
Q ss_pred ----------------------------------------------------------------CCcEEEEEeeCChhHH
Q psy11867 278 ----------------------------------------------------------------DCQIMLFSATYDKEVM 293 (399)
Q Consensus 278 ----------------------------------------------------------------~~q~l~~SAT~~~~v~ 293 (399)
-.++.+||.|......
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0134455555544434
Q ss_pred HHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeE
Q psy11867 294 EFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNV 371 (399)
Q Consensus 294 ~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v 371 (399)
.+...|--+ .+.+.. +.........-..+.....|...+...+... ...|+||||+|++.++.|+..|.+.|+++
T Consensus 391 Ef~~iY~l~--vv~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~ 467 (796)
T PRK12906 391 EFREIYNME--VITIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPH 467 (796)
T ss_pred HHHHHhCCC--EEEcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCe
Confidence 443333222 122222 1111111122223345577888888887543 55799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 372 GLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 372 ~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
.++|+++.+.++..+.+.++.|.+
T Consensus 468 ~~Lna~~~~~Ea~ii~~ag~~g~V 491 (796)
T PRK12906 468 AVLNAKNHAKEAEIIMNAGQRGAV 491 (796)
T ss_pred eEecCCcHHHHHHHHHhcCCCceE
Confidence 999999999999999999999884
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=6.4e-15 Score=151.90 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=100.7
Q ss_pred CChHHHHHHhhhhhcC--------CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD--------PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--------~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
.|+.+|..|+..+... ..+..+++.+||||||+..+..+...+ .....+++|||+|+.+|..|+.+.++.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 3788999999887532 146899999999999988776555444 3346688999999999999999999998
Q ss_pred hccCCCcEEEEEEcCchhhhhh-ccCCcEEEeCchhHHHhhhcc-ccccCCce-eEEEEechhhHhhcCCchHHHHHHHH
Q psy11867 197 GKHITDLSVRYAVRGENLERNK-KITEQIIIGTPGKVLDWGLKY-RFFDLSKI-KVFVLDEADVMIATQGHQDFSIRIQK 273 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~IlV~Tp~~l~~~~~~~-~~~~~~~~-~~lViDEah~l~~~~~~~~~~~~i~~ 273 (399)
+.... ........+.... .....|+|+|.+.|...+... ..+....- -+||+||||+.. +......+.+
T Consensus 317 ~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~----~~~~~~~l~~ 388 (667)
T TIGR00348 317 QKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ----YGELAKNLKK 388 (667)
T ss_pred CCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc----chHHHHHHHh
Confidence 64211 0011111121111 234579999999997632221 11111111 289999999953 3333333434
Q ss_pred hCCCCCcEEEEEeeC
Q psy11867 274 RLPSDCQIMLFSATY 288 (399)
Q Consensus 274 ~l~~~~q~l~~SAT~ 288 (399)
.++ +..+++||||.
T Consensus 389 ~~p-~a~~lGfTaTP 402 (667)
T TIGR00348 389 ALK-NASFFGFTGTP 402 (667)
T ss_pred hCC-CCcEEEEeCCC
Confidence 554 67899999995
No 108
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=6.9e-16 Score=134.10 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=103.1
Q ss_pred CChHHHHHHhhhhhcC-----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 125 APSKIQETALPTLLAD-----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~-----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
+|+++|.+|+..+... .++++++.+|||||||.+++..+..... ++++++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 5889999999999841 1599999999999999998866666555 6999999999999999999777654
Q ss_pred CCCcEEEE---------EE-cCch--h-hhhhccCCcEEEeCchhHHHhhhccc----------cccCCceeEEEEechh
Q psy11867 200 ITDLSVRY---------AV-RGEN--L-ERNKKITEQIIIGTPGKVLDWGLKYR----------FFDLSKIKVFVLDEAD 256 (399)
Q Consensus 200 ~~~~~~~~---------~~-~~~~--~-~~~~~~~~~IlV~Tp~~l~~~~~~~~----------~~~~~~~~~lViDEah 256 (399)
........ .. .... . ........+++++|..++........ .......+++|+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 21111110 00 0010 1 11124456799999999987643311 1234567899999999
Q ss_pred hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 257 VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 257 ~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
++..... ...+.. .+...+|+||||..
T Consensus 157 ~~~~~~~----~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS----YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH----HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH----HHHHHc--CCCCeEEEEEeCcc
Confidence 9865421 333434 46778999999964
No 109
>KOG0951|consensus
Probab=99.62 E-value=2.7e-15 Score=154.19 Aligned_cols=308 Identities=17% Similarity=0.224 Sum_probs=200.2
Q ss_pred HHHHHHHhhhccccccceee--------ccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCC
Q psy11867 72 LLQKIVRRGLIESKQELEIQ--------RKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPH 143 (399)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~ 143 (399)
++-.++...|..+...+++. ...|+.++.+.....-+.+.......|+ ....|+|.++++.+.+. ..
T Consensus 1086 ~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf----~~~n~iqtqVf~~~y~~-nd 1160 (1674)
T KOG0951|consen 1086 YFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLF----QDFNPIQTQVFTSLYNT-ND 1160 (1674)
T ss_pred eEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhc----cccCCceEEEEeeeecc-cc
Confidence 34445555555555544443 2344455554444444555555555553 34489999999999987 89
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCc
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQ 223 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (399)
+|++.+|+|||||.++-++++. .....+++++.|..+.+..+++.+.+-.....++.+....|...+........+
T Consensus 1161 ~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~ 1236 (1674)
T KOG0951|consen 1161 NVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQ 1236 (1674)
T ss_pred eEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcc
Confidence 9999999999999999998886 235678999999999998888777665555567787777777777766677789
Q ss_pred EEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCch----HHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhh
Q psy11867 224 IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQ----DFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDM 299 (399)
Q Consensus 224 IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~----~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~ 299 (399)
|+|+||+++-.+ + ..+.++++|.||+|.+.+..|.. ..+..|...+-++.+++.+|..+.+. .+++ .
T Consensus 1237 vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana-~d~i--g 1307 (1674)
T KOG0951|consen 1237 VIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANA-RDLI--G 1307 (1674)
T ss_pred eEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccc-hhhc--c
Confidence 999999987544 2 57789999999999987543211 11445666667788899999887643 2221 1
Q ss_pred CCCCeEEeccccccccc-ceeEEEEEeCChhh--------HHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC---
Q psy11867 300 VPNPLIIKLKREEESLD-NIKQHYVMCKNIDE--------KFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--- 367 (399)
Q Consensus 300 ~~~p~~i~~~~~~~~~~-~i~~~~~~~~~~~~--------k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--- 367 (399)
......+.+.......+ .+.-.-+.....+. -+..+.... ...++++||++++++|..++.-|-..
T Consensus 1308 ~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~ 1385 (1674)
T KOG0951|consen 1308 ASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAVDLVTFSHA 1385 (1674)
T ss_pred ccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhhccchhhcc
Confidence 11122222222222111 11111111111111 122222222 24468999999999998887554320
Q ss_pred -------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 368 -------------------GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 368 -------------------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+..+=|.+++..+...+-..|..|.++|+|
T Consensus 1386 ~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1386 DEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred CcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 11222229999999999999999999999875
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.60 E-value=9.4e-14 Score=143.18 Aligned_cols=243 Identities=22% Similarity=0.228 Sum_probs=160.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
.+-++++|+||||||...-..+++... ..+..+.+.-|.|--|..+.+.+.+-...-.+-.|.|.+...+.. ...
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~---s~~ 139 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV---SPR 139 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC---CCC
Confidence 588999999999999876555554433 234456777799876666666555543332355566666555443 223
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhH-hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM-IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l-~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
..|-+.|.|.|+..+.. ...++.++++||||||.= ++.......+..++...+++.++|+||||+..+ .|. .++
T Consensus 140 Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~--rfs-~~f 214 (845)
T COG1643 140 TRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE--RFS-AYF 214 (845)
T ss_pred ceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH--HHH-HHc
Confidence 46999999999998764 345899999999999963 222123334445566667789999999998853 343 344
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhh-H---HHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHH----CCCeEE
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDE-K---FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK----EGLNVG 372 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~-k---~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~----~g~~v~ 372 (399)
.+.-.+.+.... ..+..+|......+. - +............|-++||.+..++.+.+++.|.+ ....+.
T Consensus 215 ~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~ 291 (845)
T COG1643 215 GNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEIL 291 (845)
T ss_pred CCCCEEEecCCc---cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEe
Confidence 433333332211 223444433322222 2 23333333444568999999999999999999987 347899
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 373 LLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 373 ~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
.+||.|+.++..++++---.|+-+|
T Consensus 292 PLy~~L~~~eQ~rvF~p~~~~~RKV 316 (845)
T COG1643 292 PLYGALSAEEQVRVFEPAPGGKRKV 316 (845)
T ss_pred eccccCCHHHHHhhcCCCCCCcceE
Confidence 9999999999999888777775444
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.60 E-value=2.3e-14 Score=143.45 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=151.3
Q ss_pred CCCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 123 FYAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
-..|+.+|..||..+... +.+.+++++.||+|||-.+. +++.+|.+.....|+|+|+-+++|+.|.+..+..+...
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 357899999999877532 24569999999999998764 67777777777789999999999999999988887654
Q ss_pred CCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc----ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC
Q psy11867 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY----RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL 275 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~----~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l 275 (399)
- .......+.... ..++|.|+|..++....... ..+....++++|+|||||-+-. ....|+.++
T Consensus 242 ~---~~~n~i~~~~~~----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-----~~~~I~dYF 309 (875)
T COG4096 242 G---TKMNKIEDKKGD----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-----EWSSILDYF 309 (875)
T ss_pred c---cceeeeecccCC----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-----hhHHHHHHH
Confidence 2 222222222111 14679999999997764332 3455677999999999995432 122454444
Q ss_pred CCCCcEEEEEeeCChhHH------------------HHH-HhhCCCC--eEEecc--cccccccc-----------e---
Q psy11867 276 PSDCQIMLFSATYDKEVM------------------EFA-QDMVPNP--LIIKLK--REEESLDN-----------I--- 318 (399)
Q Consensus 276 ~~~~q~l~~SAT~~~~v~------------------~~~-~~~~~~p--~~i~~~--~~~~~~~~-----------i--- 318 (399)
..-. ++++||..+.+. +-+ ..++.++ +.+.+. ...-.+.. +
T Consensus 310 dA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 3222 233777543221 111 1222222 222211 10000000 0
Q ss_pred eEEE--------EEeC-ChhhHHHHHHHHhcc--CC--CCcEEEEecchHhHHHHHHHHHHC-----CCeEEEEcCCCCH
Q psy11867 319 KQHY--------VMCK-NIDEKFEAVSNIYGV--VT--IGQAMIFCHTRKTAAWLAEKMSKE-----GLNVGLLSGELTV 380 (399)
Q Consensus 319 ~~~~--------~~~~-~~~~k~~~l~~ll~~--~~--~~k~IIF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~ 380 (399)
.+.| ..+. ..+--...+.+.+.. .. .+|+||||.+..+|+.+.+.|... |--+..+.|+-.+
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 0111 1111 111122334444544 22 479999999999999999999875 3346777777554
Q ss_pred HHHHHHHHHHhc
Q psy11867 381 EQRLSILDRFRE 392 (399)
Q Consensus 381 ~~R~~v~~~F~~ 392 (399)
.++ .+..|..
T Consensus 468 ~q~--~Id~f~~ 477 (875)
T COG4096 468 AQA--LIDNFID 477 (875)
T ss_pred hHH--HHHHHHh
Confidence 443 4555543
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=1.2e-13 Score=145.68 Aligned_cols=258 Identities=14% Similarity=0.120 Sum_probs=159.2
Q ss_pred CChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 125 APSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
.+.++|.+++..++. ..|.+.|++..+|.|||+..+..+............+|||||. .+..|+.+.++++. +.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---PV 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---CC
Confidence 678999999998863 2378899999999999987543332222222233458999997 56677888888775 35
Q ss_pred cEEEEEEcCchhhhh------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC
Q psy11867 203 LSVRYAVRGENLERN------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~ 276 (399)
+.+....|....... .....+|+|+|++.+.... ..+.--.+++||+||||++- .........++.+.
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~---~~L~k~~W~~VIvDEAHrIK---N~~Sklskalr~L~ 318 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK---TALKRFSWRYIIIDEAHRIK---NENSLLSKTMRLFS 318 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH---HHhccCCCCEEEEcCccccC---CHHHHHHHHHHHhh
Confidence 555555555432111 1235689999999886542 22222356899999999984 33444555566664
Q ss_pred CCCcEEEEEeeCC-h---hHHHHHHhhCCC--------------------------------CeEEe-cccc-cccccce
Q psy11867 277 SDCQIMLFSATYD-K---EVMEFAQDMVPN--------------------------------PLIIK-LKRE-EESLDNI 318 (399)
Q Consensus 277 ~~~q~l~~SAT~~-~---~v~~~~~~~~~~--------------------------------p~~i~-~~~~-~~~~~~i 318 (399)
....+++|+|.- + +++.++....++ |..++ +... ...++..
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 345688999931 1 122221111111 00000 0000 0000111
Q ss_pred eEEEEEeC--------------------------------------------------------------ChhhHHHHHH
Q psy11867 319 KQHYVMCK--------------------------------------------------------------NIDEKFEAVS 336 (399)
Q Consensus 319 ~~~~~~~~--------------------------------------------------------------~~~~k~~~l~ 336 (399)
....+.|. ....|...|.
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHH
Confidence 11111111 0123444444
Q ss_pred HHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 337 NIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 337 ~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
.++... ...++||||........|.+.|...|+....+||+++..+|..+++.|.+.
T Consensus 478 kLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~ 536 (1033)
T PLN03142 478 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKP 536 (1033)
T ss_pred HHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccc
Confidence 444332 336999999999999999999999999999999999999999999999864
No 113
>KOG0920|consensus
Probab=99.45 E-value=8.7e-12 Score=128.51 Aligned_cols=263 Identities=19% Similarity=0.206 Sum_probs=171.0
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEE
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSV 205 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 205 (399)
.+..+.+.+..+.+ .+.++++|.||+|||.-..--++..........+++|--|.|--|.-+++.+.+-.....+-.+
T Consensus 174 a~~~r~~Il~~i~~--~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEE--NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHh--CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 34667777777777 5999999999999998877777776644445566777779998888888877665444335555
Q ss_pred EEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 206 RYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.+.++....... ...+++||.|.|+..+.. .-.+..+.++|+||+|.=.-...|.-.+.+.+-..++..++++||
T Consensus 252 GYqvrl~~~~s~---~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 252 GYQVRLESKRSR---ETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred eEEEeeecccCC---ceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 665555433222 246999999999998765 446889999999999974322223333333333445789999999
Q ss_pred eeCChhHHHHHHhhCCCCeEEecc-cccc---------------cccceeEEE-----------EEeCChhhHHHHHHH-
Q psy11867 286 ATYDKEVMEFAQDMVPNPLIIKLK-REEE---------------SLDNIKQHY-----------VMCKNIDEKFEAVSN- 337 (399)
Q Consensus 286 AT~~~~v~~~~~~~~~~p~~i~~~-~~~~---------------~~~~i~~~~-----------~~~~~~~~k~~~l~~- 337 (399)
||+..+ ....|+.+.-.+.+. .... ......+.. ..+-..+..+..+..
T Consensus 327 AT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 327 ATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 998833 233334333222221 1000 000001110 000011122233333
Q ss_pred ---HhccCCCCcEEEEecchHhHHHHHHHHHHC-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 338 ---IYGVVTIGQAMIFCHTRKTAAWLAEKMSKE-------GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 338 ---ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
+......|.+|||.+.......+++.|... .+-+..+|+.|+..+...+...--.|.-+|+
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKII 474 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKII 474 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhh
Confidence 333444588999999999999999999652 2568899999999999999998888877765
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.42 E-value=8.1e-12 Score=127.19 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=109.3
Q ss_pred CCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 124 YAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
..+++-|..|+..+... .-...++.+.||||||-+|+-.+-..+..+ .++|+|+|-.+|..|+...++....
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg--- 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG--- 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC---
Confidence 35778999999999764 236789999999999999998877777654 5699999999999999999988653
Q ss_pred CcEEEEEEcCc-------hhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh----hcCCchHHHHH
Q psy11867 202 DLSVRYAVRGE-------NLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI----ATQGHQDFSIR 270 (399)
Q Consensus 202 ~~~~~~~~~~~-------~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~----~~~~~~~~~~~ 270 (399)
.++....++- .+.+...+...|+|||=..+ ..-+++++++|+||=|--. +...+..--..
T Consensus 271 -~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 271 -AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred -CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 3333333332 22233356778999995443 2347899999999999642 11123332334
Q ss_pred HHHhCCCCCcEEEEEeeCChhHHH
Q psy11867 271 IQKRLPSDCQIMLFSATYDKEVME 294 (399)
Q Consensus 271 i~~~l~~~~q~l~~SAT~~~~v~~ 294 (399)
+.+.-..++++|+-|||-.-+...
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLES~~ 365 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLESYA 365 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHHHHH
Confidence 444444689999999995544333
No 115
>KOG0949|consensus
Probab=99.42 E-value=8.5e-12 Score=126.21 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=111.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|-.||.+.+..+=. +..++++|||.+|||.+-...+- ...+......+|+++||++|+.|+...+........-.
T Consensus 510 F~Pd~WQ~elLDsvDr--~eSavIVAPTSaGKTfisfY~iE-KVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDR--NESAVIVAPTSAGKTFISFYAIE-KVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhc--ccceEEEeeccCCceeccHHHHH-HHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 3678899999998876 69999999999999987655444 44444566789999999999999988777665322122
Q ss_pred EEEEEEcCchhhhhh-ccCCcEEEeCchhHHHhhhcc--ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCc
Q psy11867 204 SVRYAVRGENLERNK-KITEQIIIGTPGKVLDWGLKY--RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~-~~~~~IlV~Tp~~l~~~~~~~--~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q 280 (399)
......|....+-.. .-.|+|+|+-|+.+-.++... ..-+..+++++|+||+|.+....... .+..++- -..|.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l-~~Eqll~--li~CP 663 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL-LWEQLLL--LIPCP 663 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch-HHHHHHH--hcCCC
Confidence 222223332222222 346899999999998876653 34468899999999999986532211 1222222 24788
Q ss_pred EEEEEeeCCh
Q psy11867 281 IMLFSATYDK 290 (399)
Q Consensus 281 ~l~~SAT~~~ 290 (399)
++++|||+.+
T Consensus 664 ~L~LSATigN 673 (1330)
T KOG0949|consen 664 FLVLSATIGN 673 (1330)
T ss_pred eeEEecccCC
Confidence 9999999764
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.8e-11 Score=121.62 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=99.6
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|++.|....-.++. | -|+...||.|||+++.+|+...... +..+-|++||.-||.|-++++..+...+ +++
T Consensus 78 r~ydvQlig~l~Ll~--G--~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~L-GLs 149 (764)
T PRK12326 78 RPFDVQLLGALRLLA--G--DVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEAL-GLT 149 (764)
T ss_pred CcchHHHHHHHHHhC--C--CcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhc-CCE
Confidence 799999999988886 3 4779999999999999998877654 3459999999999999999999999887 889
Q ss_pred EEEEEcCchhh-hhhccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHh
Q psy11867 205 VRYAVRGENLE-RNKKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~ 259 (399)
+.+..++.... +.....++|+.+|...| .+++..+ .....+.+.+.|+||+|.++
T Consensus 150 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 150 VGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 98887765443 33356789999999876 2332221 22235678899999999664
No 117
>KOG0922|consensus
Probab=99.41 E-value=4.3e-11 Score=117.61 Aligned_cols=239 Identities=23% Similarity=0.283 Sum_probs=152.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH-HhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK-MGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
.+-+|+.|+||||||.----.+.+.--. ...++.|.-|.|--|.-+++.... ++..+ +-.+.+.+.-.+....
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~l-G~~VGY~IRFed~ts~--- 139 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQL-GEEVGYTIRFEDSTSK--- 139 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccc--cCCcEEeecCchHHHHHHHHHHHHHhCCCc-CceeeeEEEecccCCC---
Confidence 5899999999999997532222222111 223366777988777766654443 44333 5556665554433222
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC---CCCCcEEEEEeeCChhHHHHHH
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL---PSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l---~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
...|.+.|-|.|+..+.. .-.+++.+++|+||||.=. -+.|.+..+++.+ ++..+++++|||+..+ . ..
T Consensus 140 ~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERs---l~TDiLlGlLKki~~~R~~LklIimSATlda~--k-fS 211 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERS---LHTDILLGLLKKILKKRPDLKLIIMSATLDAE--K-FS 211 (674)
T ss_pred ceeEEEecchHHHHHHhc--CCccccccEEEEechhhhh---hHHHHHHHHHHHHHhcCCCceEEEEeeeecHH--H-HH
Confidence 346999999999987654 3358899999999999631 2445555555544 3467899999999843 3 33
Q ss_pred hhCCC-CeEEecccccccccceeEEEEEeCCh---hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC----CC
Q psy11867 298 DMVPN-PLIIKLKREEESLDNIKQHYVMCKNI---DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE----GL 369 (399)
Q Consensus 298 ~~~~~-p~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~----g~ 369 (399)
.|+.+ |+...-++. -.++..|..-+.. +.-+..+.++-...+.|-++||....++.+.+++.|.+. +.
T Consensus 212 ~yF~~a~i~~i~GR~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 212 EYFNNAPILTIPGRT----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHhcCCceEeecCCC----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 44444 443322221 1233444432222 223344445555566788999999999999999998775 11
Q ss_pred ----eEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 370 ----NVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 370 ----~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
-+..+||.|+.++..++++---.|.-+|+
T Consensus 288 ~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 288 DCPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred cCcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 25789999999999998877666655554
No 118
>KOG1123|consensus
Probab=99.40 E-value=4e-12 Score=120.33 Aligned_cols=251 Identities=16% Similarity=0.180 Sum_probs=151.1
Q ss_pred CCCChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 123 FYAPSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
-..++|+|+.++..+.-+ ..+.-||..|.|+|||++-+-++. . -..+|||||.+---+.|+...++.+..--+
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-t-----ikK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-T-----IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-e-----ecccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 357889999999998854 346889999999999998765443 2 234599999999999999999988753322
Q ss_pred CcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc-------ccccCCceeEEEEechhhHhhcCCchHHHHHHHHh
Q psy11867 202 DLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY-------RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR 274 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~-------~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~ 274 (399)
. .+..+.... ......++.|+|+|..++..--.+. ..+.-+..+++++||+|.+.+. -|...+..+..
T Consensus 374 ~-~i~rFTsd~--Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~-MFRRVlsiv~a- 448 (776)
T KOG1123|consen 374 D-QICRFTSDA--KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK-MFRRVLSIVQA- 448 (776)
T ss_pred c-ceEEeeccc--cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-HHHHHHHHHHH-
Confidence 1 222222211 1112456779999998875431111 1123456889999999998764 34433333322
Q ss_pred CCCCCcEEEEEeeCChhHHHHHH-hhCCCCeEEeccc----ccccccceeEEEEEeCCh---------------------
Q psy11867 275 LPSDCQIMLFSATYDKEVMEFAQ-DMVPNPLIIKLKR----EEESLDNIKQHYVMCKNI--------------------- 328 (399)
Q Consensus 275 l~~~~q~l~~SAT~~~~v~~~~~-~~~~~p~~i~~~~----~~~~~~~i~~~~~~~~~~--------------------- 328 (399)
.| .++++||+-.+-..... .++-.|......= ...-..++...-+||+-.
T Consensus 449 ---Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 449 ---HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred ---Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 22 58999997433222111 1222332211100 001112233333344321
Q ss_pred -hhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 329 -DEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 329 -~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
..|+.+-.-+++- ..+.++|||..+.-.....|-.|.+ -.+.|..++.+|..+++.|+-.
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTN 587 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccC
Confidence 1233333333322 2457999999887776666666633 3688999999999999999854
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.3e-10 Score=111.38 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=54.3
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++|-+-|++.|+.|.++|...|+++..+|++..--+|.++++.+|.|.++|||
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLV 501 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEE
Confidence 37999999999999999999999999999999999999999999999999999997
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=9.4e-11 Score=120.64 Aligned_cols=128 Identities=20% Similarity=0.143 Sum_probs=98.4
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+++|...--.+. +.-|+...||+|||+++.+|++-.... +..+-|++||.-||.|-++++..+...+ ++
T Consensus 81 m~~ydVQliGg~~Lh----~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl 152 (913)
T PRK13103 81 MRHFDVQLIGGMTLH----EGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFL-GL 152 (913)
T ss_pred CCcchhHHHhhhHhc----cCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhccc-CC
Confidence 478899987765554 456889999999999999999866654 3459999999999999999999999887 88
Q ss_pred EEEEEEcCchh-hhhhccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHh
Q psy11867 204 SVRYAVRGENL-ERNKKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~ 259 (399)
++.+..++... ++.....++|++||...| .+++...- ..-.+.+.++||||+|.++
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 98888776543 333355689999999886 33332221 1124789999999999764
No 121
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.28 E-value=2.2e-11 Score=128.05 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=58.6
Q ss_pred cCCCCChHHHHHHhhhh---hcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH-HHHHHHH
Q psy11867 121 MGFYAPSKIQETALPTL---LADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI-GEVVAKM 196 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~l---l~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~-~~~~~~~ 196 (399)
.|| ++++-|.+....+ +.+ +.+++++|+||+|||++|++|++... .+.+++|++||++|+.|+ .+.+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~-~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHD-GPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhC-CCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 344 6899999955444 444 79999999999999999999998754 246799999999999999 4666666
Q ss_pred hccC
Q psy11867 197 GKHI 200 (399)
Q Consensus 197 ~~~~ 200 (399)
.+.+
T Consensus 316 ~~~~ 319 (820)
T PRK07246 316 QEVF 319 (820)
T ss_pred HHhc
Confidence 5543
No 122
>KOG0385|consensus
Probab=99.28 E-value=1.6e-10 Score=114.69 Aligned_cols=257 Identities=18% Similarity=0.207 Sum_probs=161.6
Q ss_pred CChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhhC--CCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 125 APSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRVN--PSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l~--~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.++++|.+.++.+.+ ..|-|.|.....|-|||+.-. +++..+. .+..+| -||++|...|.. ++..+..++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~GP-fLVi~P~StL~N----W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPGP-FLVIAPKSTLDN----WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCCC-eEEEeeHhhHHH----HHHHHHHhC
Confidence 678999999988854 248899999999999997532 2333222 222333 689999988753 344445556
Q ss_pred CCcEEEEEEcCchhhhhh------ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh
Q psy11867 201 TDLSVRYAVRGENLERNK------KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR 274 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~------~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~ 274 (399)
|.+++...+|........ ....+|+|+|.+..+.- ...+.--+.+++|||||||+- .....+..+++.
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d---k~~lk~~~W~ylvIDEaHRiK---N~~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD---KSFLKKFNWRYLVIDEAHRIK---NEKSKLSKILRE 314 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh---HHHHhcCCceEEEechhhhhc---chhhHHHHHHHH
Confidence 788888888876432221 34668999999987653 223333467899999999984 455556677776
Q ss_pred CCCCCcEEEEEeeC-Ch---hHHHHHHhhCCC------------------------------------------------
Q psy11867 275 LPSDCQIMLFSATY-DK---EVMEFAQDMVPN------------------------------------------------ 302 (399)
Q Consensus 275 l~~~~q~l~~SAT~-~~---~v~~~~~~~~~~------------------------------------------------ 302 (399)
+.... .+++|.|. -+ +++.++...+++
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 65444 46677771 00 011111111100
Q ss_pred -C--eEEeccc---------------------cc----cc--------ccceeEEEEEeC--------------ChhhHH
Q psy11867 303 -P--LIIKLKR---------------------EE----ES--------LDNIKQHYVMCK--------------NIDEKF 332 (399)
Q Consensus 303 -p--~~i~~~~---------------------~~----~~--------~~~i~~~~~~~~--------------~~~~k~ 332 (399)
. +.+.++- .. .. ..+..+.|.+-. ....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 0 1111100 00 00 001122222111 113466
Q ss_pred HHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy11867 333 EAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGE 394 (399)
Q Consensus 333 ~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~ 394 (399)
..|-.++... .+.++|||.+--.....|-.++.-.++...-+-|.++.++|...++.|..-.
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~ 537 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPP 537 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCC
Confidence 6666666543 3469999999999999999998888999999999999999999999998755
No 123
>KOG4150|consensus
Probab=99.27 E-value=1e-11 Score=119.21 Aligned_cols=275 Identities=11% Similarity=0.001 Sum_probs=181.7
Q ss_pred HHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 118 VYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 118 l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+..+--.....+|.+++..+.. |+++++...|.+||.++|.+.....+... .....+++.|+.++++...+.+.-..
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~--G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~ 355 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASE--GRADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSKGQVVHV 355 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhh--cccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCCceEEEE
Confidence 3445556788999999999888 79999999999999999998877655433 33458999999999987655443333
Q ss_pred ccCCCcEEEEE---EcCchhhhh--hccCCcEEEeCchhHHHhhhcccccc---CCceeEEEEechhhHhhcCC-ch-HH
Q psy11867 198 KHITDLSVRYA---VRGENLERN--KKITEQIIIGTPGKVLDWGLKYRFFD---LSKIKVFVLDEADVMIATQG-HQ-DF 267 (399)
Q Consensus 198 ~~~~~~~~~~~---~~~~~~~~~--~~~~~~IlV~Tp~~l~~~~~~~~~~~---~~~~~~lViDEah~l~~~~~-~~-~~ 267 (399)
..++..+..++ .+....... .+.+.+++.+.|.............+ +-...+++.||+|.+....+ +. +.
T Consensus 356 ~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 356 EVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred EehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 33333332222 222222221 25677899999998876554332221 23456899999998753211 11 22
Q ss_pred HHHHHHhC-----CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCCh--------hhHHHH
Q psy11867 268 SIRIQKRL-----PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNI--------DEKFEA 334 (399)
Q Consensus 268 ~~~i~~~l-----~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~--------~~k~~~ 334 (399)
+.++.+.. +.+.|++-+|||+...++.....+ +-..+.+...+.++..-++.++|.++. +.+..-
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~--~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELA--NLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhc--CCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 22332222 457899999999998887765544 334445555566777788888887532 122222
Q ss_pred HHHHhccC--CCCcEEEEecchHhHHHHHHHHHHC----C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 335 VSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKE----G----LNVGLLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 335 l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~----g----~~v~~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
...++... .+-++|.||.+|+-|+.+....+.. | -.+..|.||...++|..+..++..|++.-
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 22232221 2348999999999999887665442 2 24778999999999999999999998753
No 124
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.27 E-value=2.3e-11 Score=122.90 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=48.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 16 ~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 16 KRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 78999999999999999999999876532 35689999999999999999888776
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.24 E-value=4.9e-10 Score=114.90 Aligned_cols=130 Identities=21% Similarity=0.183 Sum_probs=97.9
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.|+ .|++.|..+.-.+. +.-|+...||.|||+++.+|+.-.... +..+-|++++..||.+-++++..+...+
T Consensus 73 lG~-r~ydvQlig~l~L~----~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN----DGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCC-CCCchHhhhhHhhc----CCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 455 58899988765443 568999999999999999998644333 3448999999999999999999999888
Q ss_pred CCcEEEEEEcCchh-hhhhccCCcEEEeCchhHH-Hhhhcc-----ccccCCceeEEEEechhhHh
Q psy11867 201 TDLSVRYAVRGENL-ERNKKITEQIIIGTPGKVL-DWGLKY-----RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~~~IlV~Tp~~l~-~~~~~~-----~~~~~~~~~~lViDEah~l~ 259 (399)
++++.+..++... ++.....++|+.+|...|- +++..+ .....+.+.+.|+||+|.++
T Consensus 145 -GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 145 -GLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred -CCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 7888887776554 3344667899999997652 333221 11235678999999999663
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=5.6e-10 Score=115.54 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=94.5
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+++|...--.+. +.-|+...||-|||+++.+|+.-....+.. +=||+.+--||..=.+++..+..++ +++
T Consensus 138 ~~ydVQLiGgivLh----~G~IAEM~TGEGKTLvatlp~yLnAL~G~g---VHvVTvNDYLA~RDaewm~p~y~fl-GLt 209 (1025)
T PRK12900 138 VPYDVQLIGGIVLH----SGKISEMATGEGKTLVSTLPTFLNALTGRG---VHVVTVNDYLAQRDKEWMNPVFEFH-GLS 209 (1025)
T ss_pred cccchHHhhhHHhh----cCCccccCCCCCcchHhHHHHHHHHHcCCC---cEEEeechHhhhhhHHHHHHHHHHh-CCe
Confidence 57778876655554 446789999999999999998766555422 7778888899999999999998887 899
Q ss_pred EEEEEcCch-hhhhhccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHh
Q psy11867 205 VRYAVRGEN-LERNKKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~-~~~~~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~ 259 (399)
+.+...+.. ..+.....++|++||...| .+++..+- ..-.+.+.|.||||+|.++
T Consensus 210 Vg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 210 VGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 988866543 3444567889999999876 34433221 1225678999999999664
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1.1e-09 Score=112.32 Aligned_cols=127 Identities=21% Similarity=0.158 Sum_probs=98.7
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+++|...--.+. +.-|+...||-|||+++.+|+.-....+ ..+-||+++.-||.+=.+++..+..++ +++
T Consensus 85 r~ydVQliGgl~Lh----~G~IAEM~TGEGKTL~atlpaylnAL~G---kgVhVVTvNdYLA~RDae~m~~vy~~L-GLt 156 (939)
T PRK12902 85 RHFDVQLIGGMVLH----EGQIAEMKTGEGKTLVATLPSYLNALTG---KGVHVVTVNDYLARRDAEWMGQVHRFL-GLS 156 (939)
T ss_pred CcchhHHHhhhhhc----CCceeeecCCCChhHHHHHHHHHHhhcC---CCeEEEeCCHHHHHhHHHHHHHHHHHh-CCe
Confidence 78889988776664 4568999999999999999988655543 349999999999999999999999888 899
Q ss_pred EEEEEcCchh-hhhhccCCcEEEeCchhH-----HHhhhc-cccccCCceeEEEEechhhHh
Q psy11867 205 VRYAVRGENL-ERNKKITEQIIIGTPGKV-----LDWGLK-YRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~~-~~~~~~~~~IlV~Tp~~l-----~~~~~~-~~~~~~~~~~~lViDEah~l~ 259 (399)
+.+..++... ++.....++|+++|+..| .+.+.. ......+.+.+.||||+|.++
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 8887766543 344467889999999988 333221 222346788999999999664
No 128
>KOG0387|consensus
Probab=99.21 E-value=4.6e-09 Score=104.95 Aligned_cols=272 Identities=15% Similarity=0.123 Sum_probs=163.7
Q ss_pred ccccc-CCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehh--HHHHHHhhCCCCCCCeEE
Q psy11867 103 KTFEA-LHLKPELLKGVYEMGFYAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAF--TLTMLSRVNPSIQEPQVL 177 (399)
Q Consensus 103 ~~f~~-~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~--~l~il~~l~~~~~~~~~l 177 (399)
..++. +.++..+.. .+.++|.+++..+.+- .+..-|+....|-|||..- .|+.+++-. .-...+|
T Consensus 190 ~~~~~~~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~~~paL 259 (923)
T KOG0387|consen 190 KKLEGGFKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KLTKPAL 259 (923)
T ss_pred ccccccccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cccCceE
Confidence 33443 455655544 4568999999988642 3567788899999999542 223333321 2235699
Q ss_pred EEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchh----------------hhhhccCCcEEEeCchhHHHhhhcccc
Q psy11867 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL----------------ERNKKITEQIIIGTPGKVLDWGLKYRF 241 (399)
Q Consensus 178 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~IlV~Tp~~l~~~~~~~~~ 241 (399)
||||. .++.|+.+++..+.. .+++...++.... .+......+|+|+|...+.-. ...
T Consensus 260 IVCP~-Tii~qW~~E~~~w~p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~ 332 (923)
T KOG0387|consen 260 IVCPA-TIIHQWMKEFQTWWP---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDD 332 (923)
T ss_pred EEccH-HHHHHHHHHHHHhCc---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---Ccc
Confidence 99998 466777777777654 5566655544331 111122446999999876432 123
Q ss_pred ccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeC-Chh---HHHHHHhhCC--------------CC
Q psy11867 242 FDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY-DKE---VMEFAQDMVP--------------NP 303 (399)
Q Consensus 242 ~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~-~~~---v~~~~~~~~~--------------~p 303 (399)
+.-...+++|+||.|++-. -...+....+.++ ..+.+++|.|. -+. ++.+.....+ .|
T Consensus 333 l~~~~W~y~ILDEGH~IrN---pns~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~p 408 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRN---PNSKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHP 408 (923)
T ss_pred cccccccEEEecCcccccC---CccHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhh
Confidence 3344678999999999843 3334444444444 55667778882 111 1111111111 11
Q ss_pred eEEec-------------------------------cc--ccccccceeEEEEEeC------------------------
Q psy11867 304 LIIKL-------------------------------KR--EEESLDNIKQHYVMCK------------------------ 326 (399)
Q Consensus 304 ~~i~~-------------------------------~~--~~~~~~~i~~~~~~~~------------------------ 326 (399)
+.+-- +. ....++.-...+++|.
T Consensus 409 I~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng 488 (923)
T KOG0387|consen 409 INRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG 488 (923)
T ss_pred eeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC
Confidence 11100 00 0001111223334441
Q ss_pred --------------------------------------ChhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHH-
Q psy11867 327 --------------------------------------NIDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMS- 365 (399)
Q Consensus 327 --------------------------------------~~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~- 365 (399)
....|...+..++... .+.++|.|..++.....|...|.
T Consensus 489 ~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 489 KRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred CccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh
Confidence 1123555666655543 23589999999999999999998
Q ss_pred HCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 366 KEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 366 ~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
..|+...-+.|..+...|...+++|.++..
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~s 598 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDES 598 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCCc
Confidence 479999999999999999999999998753
No 129
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.17 E-value=1.2e-10 Score=94.29 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.--++...+|+|||--.+.-++..... .+.++|||.|||.++..+++.++.. .+. +..... ......+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~-----~~~--~~t~~~--~~~~~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGL-----PVR--FHTNAR--MRTHFGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTS-----SEE--EESTTS--S----SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcC-----Ccc--cCceee--eccccCC
Confidence 5667888999999998877655553332 4567999999999999888877643 122 211111 1122344
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-CchHHHHHHHHhCCCCCcEEEEEeeCChhH
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ-GHQDFSIRIQKRLPSDCQIMLFSATYDKEV 292 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~-~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v 292 (399)
.-|-|.|.+.+...+.+ .....+++++|+||||..-... .+...+.... . ...+.+|++|||-|...
T Consensus 73 ~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~-~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELA-E-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHH-H-TTS-EEEEEESS-TT--
T ss_pred CcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhh-h-ccCeeEEEEeCCCCCCC
Confidence 45889999988877654 3456899999999999862110 0111111221 1 13468999999977554
No 130
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.16 E-value=3.9e-09 Score=108.31 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=60.5
Q ss_pred hhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++..+...+.. ....++||||++++.|+.|++.|.+.|+++..+||++++.+|..+++.|+.|++.|||
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV 497 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV 497 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEE
Confidence 3445555554443 2346899999999999999999999999999999999999999999999999999984
No 131
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.12 E-value=2.9e-10 Score=106.66 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=90.3
Q ss_pred HHHHHhhhhhc-----------CCCCcEEEEccCCCCceehhHHHHHHhhCCCC--CCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 129 IQETALPTLLA-----------DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI--QEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 129 iQ~~ai~~ll~-----------~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
+|.+++..++. .+.+.++++..+|+|||+..+..+........ ....+|||+|. .+..|+..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 46666665532 23688999999999999887765543332221 22259999999 788899999999
Q ss_pred HhccCCCcEEEEEEcCchh---hhhhccCCcEEEeCchhHHHhh--hccccccCCceeEEEEechhhHhhcCCchHHHHH
Q psy11867 196 MGKHITDLSVRYAVRGENL---ERNKKITEQIIIGTPGKVLDWG--LKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIR 270 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IlV~Tp~~l~~~~--~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~ 270 (399)
+.... .+++....+.... ........+++|+|.+.+.... .....+.--+++++|+||+|.+- +.......
T Consensus 80 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k---~~~s~~~~ 155 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK---NKDSKRYK 155 (299)
T ss_dssp HSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT---TTTSHHHH
T ss_pred ccccc-cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc---cccccccc
Confidence 87542 3455555555411 1122445689999999988110 01112223458999999999983 23333334
Q ss_pred HHHhCCCCCcEEEEEeeC
Q psy11867 271 IQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 271 i~~~l~~~~q~l~~SAT~ 288 (399)
.+..+. ....+++|||.
T Consensus 156 ~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-
T ss_pred cccccc-cceEEeecccc
Confidence 444455 66778999993
No 132
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.09 E-value=4.9e-08 Score=94.39 Aligned_cols=230 Identities=20% Similarity=0.230 Sum_probs=153.2
Q ss_pred CCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc------EEEE-------------------------EEcCchh--
Q psy11867 168 NPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL------SVRY-------------------------AVRGENL-- 214 (399)
Q Consensus 168 ~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~------~~~~-------------------------~~~~~~~-- 214 (399)
.++-..|++|||+|+|..|.++.+.+-++......+ .-.+ ..+|...
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 445567999999999999999888887765330000 0000 0011000
Q ss_pred -------hh------hhccCCcEEEeCchhHHHhhhc----cccc-cCCceeEEEEechhhHhhcCCchHHHHHHHHhCC
Q psy11867 215 -------ER------NKKITEQIIIGTPGKVLDWGLK----YRFF-DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276 (399)
Q Consensus 215 -------~~------~~~~~~~IlV~Tp~~l~~~~~~----~~~~-~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~ 276 (399)
.+ ..-...+||||+|=-|...+.. .+.. .++.+.++|+|.||.|.- |. .+.+..+++.++
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QN-W~Hv~~v~~~lN 189 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QN-WEHVLHVFEHLN 189 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hh-HHHHHHHHHHhc
Confidence 00 0012357999999777655442 2222 388999999999999873 33 333444555442
Q ss_pred ---C---------------------CCcEEEEEeeCChhHHHHHHhhCCCC---eEEecccc-----cccccceeEEEEE
Q psy11867 277 ---S---------------------DCQIMLFSATYDKEVMEFAQDMVPNP---LIIKLKRE-----EESLDNIKQHYVM 324 (399)
Q Consensus 277 ---~---------------------~~q~l~~SAT~~~~v~~~~~~~~~~p---~~i~~~~~-----~~~~~~i~~~~~~ 324 (399)
. -+|+|++|+...+++..+......+. +.+..... ......+.|.+..
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 1 25999999999999999888865442 22222222 2345567787765
Q ss_pred eC--Ch----hhHHHHHHH----Hhc-cCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 325 CK--NI----DEKFEAVSN----IYG-VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 325 ~~--~~----~~k~~~l~~----ll~-~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
.+ +. +.+++...+ -+. ....+.+|||++|--.=-.|.+.|.+.++..+.+|.-.+..+-.++-..|..|
T Consensus 270 ~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G 349 (442)
T PF06862_consen 270 FDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG 349 (442)
T ss_pred ecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC
Confidence 33 22 333333222 222 34457899999999999999999999999999999999999999999999999
Q ss_pred CCcccC
Q psy11867 394 EFKIYS 399 (399)
Q Consensus 394 ~~~ILV 399 (399)
+.+||.
T Consensus 350 ~~~iLL 355 (442)
T PF06862_consen 350 RKPILL 355 (442)
T ss_pred CceEEE
Confidence 999874
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=6.2e-09 Score=106.53 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=96.8
Q ss_pred CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 122 GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 122 g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
|. .|+++|...--.+.. | -|+...||-|||+++.+|+.-....+ ..+=|++.+--||..=.+++..+..++
T Consensus 76 G~-r~ydVQliGglvLh~--G--~IAEMkTGEGKTLvAtLpayLnAL~G---kgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDL--G--SVAEMKTGEGKTITSIAPVYLNALTG---KGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred CC-CcCchHHHHHHHHhc--C--CeeeecCCCCccHHHHHHHHHHHhcC---CceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 44 789999988866554 3 47999999999999999886544433 338888999999999899999988887
Q ss_pred CcEEEEEEcCchh-hhhhccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHh
Q psy11867 202 DLSVRYAVRGENL-ERNKKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~ 259 (399)
++++.+...+... .+.....++|+++|...| .+++..+- ..-.+.+.|.|+||+|.++
T Consensus 147 GLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred CCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 8888887766443 444466789999999887 44443221 1235678899999999664
No 134
>KOG0924|consensus
Probab=99.08 E-value=1.4e-08 Score=99.98 Aligned_cols=252 Identities=21% Similarity=0.255 Sum_probs=151.0
Q ss_pred HHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH-HhccCCCcEEEE
Q psy11867 129 IQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK-MGKHITDLSVRY 207 (399)
Q Consensus 129 iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~ 207 (399)
++.+.+..+-. ++-|++.+.||||||....-.+++.-.. .+..+-|--|.|.-|..+++.+.. ++..+ +-.+.+
T Consensus 360 ~R~~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edGY~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l-G~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDGYA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTL-GDTVGY 434 (1042)
T ss_pred HHHHHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhcccc--cCCeeeecCchHHHHHHHHHHHHHHhCCcc-ccccce
Confidence 34444444444 5889999999999997533222211111 222344445999888887766554 43333 445555
Q ss_pred EEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC---CCCCcEEEE
Q psy11867 208 AVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL---PSDCQIMLF 284 (399)
Q Consensus 208 ~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l---~~~~q~l~~ 284 (399)
.+.-.+.... ...|=+.|-|.|+.-... .-.+.+..++|+||||.-. -..+.+..+++.. +.+.++|.+
T Consensus 435 sIRFEdvT~~---~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERs---lNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 435 SIRFEDVTSE---DTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERS---LNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred EEEeeecCCC---ceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcc---cchHHHHHHHHHHHHhhccceEEEe
Confidence 5554444322 234888999999875443 3457889999999999742 2233333444332 347889999
Q ss_pred EeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccC---CCCcEEEEecchHhHHHHH
Q psy11867 285 SATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV---TIGQAMIFCHTRKTAAWLA 361 (399)
Q Consensus 285 SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~k~IIF~~s~~~a~~l~ 361 (399)
|||+.. +.|...+-.-|.+..-++. ..+.-.|...+-.+-...++...+.-+ ..|-++||....+..+-.+
T Consensus 507 SATm~a--~kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 507 SATMDA--QKFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred eccccH--HHHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 999874 4555444434543322221 123334444433333333444444332 3477999998877555544
Q ss_pred HH----HHHC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 362 EK----MSKE------GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 362 ~~----L~~~------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.. |.+. +..|..+++.|+.+-...+++.--.|.-+++|
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~Iv 628 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIV 628 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEE
Confidence 44 4332 56899999999999999998887777766654
No 135
>KOG0923|consensus
Probab=99.08 E-value=1.5e-08 Score=99.40 Aligned_cols=253 Identities=21% Similarity=0.284 Sum_probs=154.8
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH-HHHHHHhccCCCcEE
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG-EVVAKMGKHITDLSV 205 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~-~~~~~~~~~~~~~~~ 205 (399)
+++-.+.+.++-. .+-+||.|.||||||...--.+.+. .-...+.++-|--|.|--|..+. ++.+.++..+ +..+
T Consensus 267 y~ykdell~av~e--~QVLiI~GeTGSGKTTQiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL-G~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKE--HQVLIIVGETGSGKTTQIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL-GHEV 342 (902)
T ss_pred hhhHHHHHHHHHh--CcEEEEEcCCCCCccccccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCccc-cccc
Confidence 3444555566655 5899999999999997532111111 11123344666679998887775 4445555444 3334
Q ss_pred EEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHH---hCCCCCcEE
Q psy11867 206 RYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK---RLPSDCQIM 282 (399)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~---~l~~~~q~l 282 (399)
.+.....+... ...-|=+.|-|+|+.-++ ...++....++||||||.=- -+.+.+..+++ ..+++.+++
T Consensus 343 GYsIRFEdcTS---ekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERT---L~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDCTS---EKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERT---LHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred ceEEEeccccC---cceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhh---hhhhHHHHHHHHHHhhCCcceEE
Confidence 44443333222 122377899999988654 45679999999999999631 23344444433 335789999
Q ss_pred EEEeeCChhHHHHHHhhCCC-CeEEecccccccccceeEEEEEeCChhhHHHHHHHHhc---cCCCCcEEEEecchHhHH
Q psy11867 283 LFSATYDKEVMEFAQDMVPN-PLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG---VVTIGQAMIFCHTRKTAA 358 (399)
Q Consensus 283 ~~SAT~~~~v~~~~~~~~~~-p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~---~~~~~k~IIF~~s~~~a~ 358 (399)
+.|||+..+ .|- .|+.+ |++..-++. ..+.-+|..++..+---.++..+++ ..+.|-+|||....+..+
T Consensus 415 IsSAT~DAe--kFS-~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 415 ISSATMDAE--KFS-AFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred eeccccCHH--HHH-HhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 999998743 333 34444 444332222 2344566666554444344444443 335578999998887766
Q ss_pred HHHHHHHH----CC-----CeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 359 WLAEKMSK----EG-----LNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 359 ~l~~~L~~----~g-----~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
...+.|.. +| +-+..+|+.++.+.+..|++---.|.-+|+
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVV 536 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVV 536 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEE
Confidence 66555543 33 347889999999999998876666655543
No 136
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=2.6e-10 Score=106.14 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=56.3
Q ss_pred CChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCC---CCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ---EPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~---~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
.|+|.|.+.+..+... .|.++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4799999955554321 27999999999999999999999876543222 247999999999999887777665
No 137
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=2.6e-10 Score=106.14 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=56.3
Q ss_pred CChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCC---CCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ---EPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~---~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
.|+|.|.+.+..+... .|.++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4799999955554321 27999999999999999999999876543222 247999999999999887777665
No 138
>KOG1000|consensus
Probab=99.06 E-value=3.9e-08 Score=93.65 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=156.8
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..+.|+|.+.+...++. |..+++....|-|||+.++. |......... .||+||. .+-..+.+.+.++...+.
T Consensus 197 s~LlPFQreGv~faL~R-gGR~llADeMGLGKTiQAla-IA~yyraEwp---lliVcPA-svrftWa~al~r~lps~~-- 268 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALER-GGRILLADEMGLGKTIQALA-IARYYRAEWP---LLIVCPA-SVRFTWAKALNRFLPSIH-- 268 (689)
T ss_pred HhhCchhhhhHHHHHhc-CCeEEEecccccchHHHHHH-HHHHHhhcCc---EEEEecH-HHhHHHHHHHHHhccccc--
Confidence 45679999999999886 88899999999999988753 3333333223 7999997 455566777777765442
Q ss_pred EEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEE
Q psy11867 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~ 283 (399)
.+....++.+.....-....|.|.+.+.+..+- ..+.-...+++|+||.|.+-... ......+...+..-.++|+
T Consensus 269 pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~---~~l~~~~~~vvI~DEsH~Lk~sk--tkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 269 PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLH---DILKKEKYRVVIFDESHMLKDSK--TKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred ceEEEecccCCccccccCCeEEEEEHHHHHHHH---HHHhcccceEEEEechhhhhccc--hhhhhhhhhHHHHhhheEE
Confidence 244455554433222223458888998776542 22234458899999999986532 2223333333344567899
Q ss_pred EEeeC-------------------ChhHHHHHHhhCCC---CeEEecccc------------------------cccccc
Q psy11867 284 FSATY-------------------DKEVMEFAQDMVPN---PLIIKLKRE------------------------EESLDN 317 (399)
Q Consensus 284 ~SAT~-------------------~~~v~~~~~~~~~~---p~~i~~~~~------------------------~~~~~~ 317 (399)
+|.|. -+...+++..|... +........ ...++.
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99982 11122233222211 111111000 011111
Q ss_pred eeEEEEEeCC---------------------hhh---------------HHHHHHHHhcc------CCCCcEEEEecchH
Q psy11867 318 IKQHYVMCKN---------------------IDE---------------KFEAVSNIYGV------VTIGQAMIFCHTRK 355 (399)
Q Consensus 318 i~~~~~~~~~---------------------~~~---------------k~~~l~~ll~~------~~~~k~IIF~~s~~ 355 (399)
-++..+.+.. .+. |...+.+.+.. .+..+.+|||+-..
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 1222222211 111 22233333332 23468999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 356 TAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 356 ~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
..+.+..++.+.++...-+.|..+..+|....+.|...
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~s 541 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTS 541 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999864
No 139
>KOG0925|consensus
Probab=99.05 E-value=7.5e-09 Score=98.22 Aligned_cols=257 Identities=20% Similarity=0.192 Sum_probs=144.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+..|...+.++.-.+-|++.---.-...+.+-+..+.+ ++-+++.|.||||||...--..+....... ..+.+--|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~--nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLN--NQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhc--CceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCc
Confidence 45678888888887777664322223333444444444 699999999999999754333333322221 33677779
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH-hh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM-IA 260 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l-~~ 260 (399)
.|--|.++......-.+-.-+-.+.+....++-.... .=+-.+|-|+|+.-... .-.+...+++|+||||.- ++
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~---T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPN---TLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhccccccccccCChh---HHHHHhcchHHHHHHhh--CcccccccEEEechhhhhhHH
Confidence 9988888766554432211122222222221111000 01234566666553222 234788999999999953 22
Q ss_pred cCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhH---HHHHHH
Q psy11867 261 TQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEK---FEAVSN 337 (399)
Q Consensus 261 ~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k---~~~l~~ 337 (399)
.......+..+...- ++.+++.+|||+... -.+.|+.++-.+.+... ..+.-+|..-...+.- +..+..
T Consensus 175 TDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred HHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHHHHHH
Confidence 222233333444444 589999999997643 33455666555555431 1222233322222222 333444
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHC---------CCeEEEEc
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKE---------GLNVGLLS 375 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~---------g~~v~~lh 375 (399)
+-.....|-+++|....++.+..++.+... ..+|..+|
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy 293 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY 293 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC
Confidence 445556789999999999888888877643 24677777
No 140
>KOG0389|consensus
Probab=99.03 E-value=2e-09 Score=107.29 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=91.0
Q ss_pred CChHHHHHHhhhhh--cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 125 APSKIQETALPTLL--ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll--~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
.+-++|.-.++++. ...+-+.|+....|-|||... ++.+..+.+......-|||||...| ..|++.+.++||.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~gpHLVVvPsSTl----eNWlrEf~kwCPs 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPGPHLVVVPSSTL----ENWLREFAKWCPS 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCCCcEEEecchhH----HHHHHHHHHhCCc
Confidence 36689998888773 223678899999999999653 3444444333333446899998776 4566777778899
Q ss_pred cEEEEEEcCchhhhhh-------ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 203 LSVRYAVRGENLERNK-------KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~~-------~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
+++...+|.....+.. ....+|+|+|......--.....+.-.++.++|+||+|.+-
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLK 537 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLK 537 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhh
Confidence 9999988887544333 23668999999866543233344556788999999999774
No 141
>KOG0926|consensus
Probab=99.02 E-value=6.8e-09 Score=103.69 Aligned_cols=226 Identities=23% Similarity=0.306 Sum_probs=130.5
Q ss_pred CCChHHHHHHh------------hhhhcCCCCcEEEEccCCCCceehhHHHHHHhh---CCCCCCCeEEEEeCcHHHHHH
Q psy11867 124 YAPSKIQETAL------------PTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRV---NPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 124 ~~p~~iQ~~ai------------~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l---~~~~~~~~~lil~Pt~~La~Q 188 (399)
.+|..||..-+ .+|.. +--|||||.||||||...---+.+.- .+...+..+=|--|.|--|..
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~--n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINE--NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhc--CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 46777776432 33333 56789999999999975322222211 111122244455588877766
Q ss_pred HHHHHH-HHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH
Q psy11867 189 IGEVVA-KMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 189 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
+.+... .++. + +-.+.+.++... .......|-+.|-|-|+.-+. ..|-+.....+|+||||.-. -+.+.
T Consensus 321 mAkRVa~EL~~-~-~~eVsYqIRfd~---ti~e~T~IkFMTDGVLLrEi~--~DflL~kYSvIIlDEAHERS---vnTDI 390 (1172)
T KOG0926|consen 321 MAKRVAFELGV-L-GSEVSYQIRFDG---TIGEDTSIKFMTDGVLLREIE--NDFLLTKYSVIILDEAHERS---VNTDI 390 (1172)
T ss_pred HHHHHHHHhcc-C-ccceeEEEEecc---ccCCCceeEEecchHHHHHHH--HhHhhhhceeEEechhhhcc---chHHH
Confidence 655443 3433 2 334444333221 112234699999999987654 36778999999999999631 23333
Q ss_pred HHHHHH-------hCCC------CCcEEEEEeeCChhHHHHH--HhhC--CCCeEEecccccccccceeEEEEEeCC---
Q psy11867 268 SIRIQK-------RLPS------DCQIMLFSATYDKEVMEFA--QDMV--PNPLIIKLKREEESLDNIKQHYVMCKN--- 327 (399)
Q Consensus 268 ~~~i~~-------~l~~------~~q~l~~SAT~~~~v~~~~--~~~~--~~p~~i~~~~~~~~~~~i~~~~~~~~~--- 327 (399)
+..++. .+.. ..++|+||||+.- .+|. +..+ ..| .+.++...-. +.-+|-.-..
T Consensus 391 LiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pP-likVdARQfP---VsIHF~krT~~DY 464 (1172)
T KOG0926|consen 391 LIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPP-LIKVDARQFP---VSIHFNKRTPDDY 464 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEe--cccccCceecCCCCc-eeeeecccCc---eEEEeccCCCchH
Confidence 333332 2222 5679999999752 2222 1222 223 4444432211 1112211111
Q ss_pred hhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC
Q psy11867 328 IDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367 (399)
Q Consensus 328 ~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~ 367 (399)
..+-+...+.+-+..+.|-+|||+.....+..|++.|++.
T Consensus 465 i~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 465 IAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 1344555666667778899999999999999999999875
No 142
>KOG0390|consensus
Probab=99.02 E-value=3.3e-08 Score=100.77 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=97.4
Q ss_pred CChHHHHHHhhhhhcC--------CCCcEEEEccCCCCceehhHHHHHHhhCCCCCC-----CeEEEEeCcHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD--------PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQE-----PQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--------~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~-----~~~lil~Pt~~La~Q~~~ 191 (399)
.++|+|.+.+..+... .....|+.-..|+|||+.... .+..+.+.... .++|||+|. .|+.-+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 6789999999888643 123566667799999987543 33333332344 679999997 68888888
Q ss_pred HHHHHhccCCCcEEEEEEcCchh--hh--------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc
Q psy11867 192 VVAKMGKHITDLSVRYAVRGENL--ER--------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~ 261 (399)
+|.++... ..+......++..- .. ......-|++-+.+.+.+++ +.+....++++|+||.|++-.
T Consensus 316 EF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~---~~il~~~~glLVcDEGHrlkN- 390 (776)
T KOG0390|consen 316 EFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYC---RKILLIRPGLLVCDEGHRLKN- 390 (776)
T ss_pred HHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH---HHHhcCCCCeEEECCCCCccc-
Confidence 88887653 13444444444431 00 01222347788888876654 344567899999999999743
Q ss_pred CCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 262 QGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 262 ~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
........+..+. ..+.|++|.|
T Consensus 391 --~~s~~~kaL~~l~-t~rRVLLSGT 413 (776)
T KOG0390|consen 391 --SDSLTLKALSSLK-TPRRVLLTGT 413 (776)
T ss_pred --hhhHHHHHHHhcC-CCceEEeeCC
Confidence 2333333444443 4567888999
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.02 E-value=2.3e-08 Score=101.74 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=140.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
..-.++.||.|||||.+..-++-..+.. ...++|+|+..++|+.++.+.++..+-. ++.......+..+.. ..
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv~Y~d~~~~~i~~---~~ 121 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS--GFVNYLDSDDYIIDG---RP 121 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC--cceeeeccccccccc---cc
Confidence 4556888999999998765554444332 4567999999999999999998865421 333222222222221 12
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH------HH-HHHHhCCCCCcEEEEEeeCChhHHH
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF------SI-RIQKRLPSDCQIMLFSATYDKEVME 294 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~------~~-~i~~~l~~~~q~l~~SAT~~~~v~~ 294 (399)
.+-+++..+.|... ..-.+.+.++|||||+--.+.. -+... +. .+...+.....+|++-|++.....+
T Consensus 122 ~~rLivqIdSL~R~----~~~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 122 YDRLIVQIDSLHRL----DGSLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred cCeEEEEehhhhhc----ccccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 34666666777554 1224667899999999877643 22222 22 2334455677899999999999999
Q ss_pred HHHhhCCCCeEEecccccccccceeEEEEEeC-----------------------------------ChhhHHHHHHHHh
Q psy11867 295 FAQDMVPNPLIIKLKREEESLDNIKQHYVMCK-----------------------------------NIDEKFEAVSNIY 339 (399)
Q Consensus 295 ~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~-----------------------------------~~~~k~~~l~~ll 339 (399)
++..+.++..+..+........-....-+.++ ...........++
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 99998765332222111110000000000000 0011223344444
Q ss_pred ccCCC-CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHH
Q psy11867 340 GVVTI-GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQ 382 (399)
Q Consensus 340 ~~~~~-~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~ 382 (399)
..... .++-|||.|...++.+++.....+.+|..++|+-+..+
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 44444 45667999999999999999988999999999876663
No 144
>KOG0953|consensus
Probab=99.02 E-value=3e-09 Score=102.39 Aligned_cols=217 Identities=15% Similarity=0.181 Sum_probs=144.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh-cc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK-KI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 220 (399)
.+-++-+|||.||||- -+++++...+. .++--|.|-||..+++.+.+.+-.+ ...+|.+...... ..
T Consensus 191 RkIi~H~GPTNSGKTy----~ALqrl~~aks---GvycGPLrLLA~EV~~r~na~gipC-----dL~TGeE~~~~~~~~~ 258 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTY----RALQRLKSAKS---GVYCGPLRLLAHEVYDRLNALGIPC-----DLLTGEERRFVLDNGN 258 (700)
T ss_pred heEEEEeCCCCCchhH----HHHHHHhhhcc---ceecchHHHHHHHHHHHhhhcCCCc-----cccccceeeecCCCCC
Confidence 3456667899999995 45666665544 6888999999999999999886655 3333332211111 12
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
..+.+=||.+++-- -..+++.||||.++|-+......+...++.....+.++++ .+.+..+.+.++
T Consensus 259 ~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~ 324 (700)
T KOG0953|consen 259 PAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKIL 324 (700)
T ss_pred cccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHH
Confidence 24566777765421 2356799999999998876677777778777666766665 455666666654
Q ss_pred C---CCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcC
Q psy11867 301 P---NPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSG 376 (399)
Q Consensus 301 ~---~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg 376 (399)
. +-+.++ .|...... .-.+.+..-++....|-||| |-|++....+...+.+.|.. +++++|
T Consensus 325 k~TGd~vev~-------------~YeRl~pL-~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 325 KMTGDDVEVR-------------EYERLSPL-VVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred hhcCCeeEEE-------------eecccCcc-eehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 2 322221 11111110 01112333344455566655 55788899999999888665 999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCcccC
Q psy11867 377 ELTVEQRLSILDRFRE--GEFKIYS 399 (399)
Q Consensus 377 ~~~~~~R~~v~~~F~~--G~~~ILV 399 (399)
+++++.|.+--..|.+ ++++|||
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlV 414 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLV 414 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEE
Confidence 9999999999999998 9999987
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.99 E-value=3.5e-09 Score=113.49 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCChHHHHHHhhhhh---cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHH
Q psy11867 124 YAPSKIQETALPTLL---ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll---~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 191 (399)
.++++-|.+.+..+. .+ ++++++.||||+|||++|++|++..... .+.+++|-++|+.|..|+..
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~-~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRD-SEHALIEAGTGTGKSLAYLLPAAYFAKK--KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhc-CCCEEEECCCCCchhHHHHHHHHHHhhc--cCCeEEEEcCCHHHHHHHHH
Confidence 489999999665553 33 7899999999999999999999876543 34569999999999999865
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=98.99 E-value=4.9e-10 Score=112.58 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=89.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
+|+.+.. ..+..++.-..-.+|+|+|..|+...+++ +.|.-++ ...|+|||...+- +.+.+.. .++|+|+
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHH-HHHHHhh----hheEeec
Confidence 4444432 34445555556679999999999999865 1222233 3469999988764 3333332 5799999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhh----------------------------hhhccCCcEEEeCchhH
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE----------------------------RNKKITEQIIIGTPGKV 232 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~IlV~Tp~~l 232 (399)
|+.+|..|+.+.+..-..- .+....++...... ++...+--||.+|.+.+
T Consensus 214 PSIsLLsQTlrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl 291 (1518)
T COG4889 214 PSISLLSQTLREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSL 291 (1518)
T ss_pred chHHHHHHHHHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccch
Confidence 9999999998887653221 22222222111110 01112234889999887
Q ss_pred HHhhhccccccCCceeEEEEechhhHh
Q psy11867 233 LDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 233 ~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
...- .-....+..++++|+|||||-.
T Consensus 292 ~~i~-eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 292 PRIK-EAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHH-HHHHcCCCCccEEEecchhccc
Confidence 6542 2223347789999999999974
No 147
>KOG0392|consensus
Probab=98.96 E-value=8.5e-09 Score=107.10 Aligned_cols=152 Identities=20% Similarity=0.104 Sum_probs=97.5
Q ss_pred CChHHHHHHhhhh--hcCCCCcEEEEccCCCCceehhHHHHHHhh-CCC----CCCCe-EEEEeCcHHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTL--LADPPHNMIAQSQSGTGKTAAFTLTMLSRV-NPS----IQEPQ-VLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 125 ~p~~iQ~~ai~~l--l~~~g~~vi~~a~TGsGKT~~~~l~il~~l-~~~----~~~~~-~lil~Pt~~La~Q~~~~~~~~ 196 (399)
.++.||.+.++++ |+..+-|-|.|...|-|||+..+.-+..-. .+. ..... .|||||. .|+--+..+++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4567899988876 444467899999999999987654443322 221 01222 7999997 6887777777777
Q ss_pred hccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHH
Q psy11867 197 GKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQK 273 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~ 273 (399)
.. .+++...+|+....... ..+.+|+|+..+.+.+-.. .+.-....|+|+||-|.+- .....+....+
T Consensus 1054 ~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d---~l~~~~wNYcVLDEGHVik---N~ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD---YLIKIDWNYCVLDEGHVIK---NSKTKLTKAVK 1124 (1549)
T ss_pred cc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH---HHHhcccceEEecCcceec---chHHHHHHHHH
Confidence 54 45665566655443332 3456899999998754322 2222356699999999974 23344445555
Q ss_pred hCCCCCcEEEEEee
Q psy11867 274 RLPSDCQIMLFSAT 287 (399)
Q Consensus 274 ~l~~~~q~l~~SAT 287 (399)
.+..+. .+.+|.|
T Consensus 1125 qL~a~h-RLILSGT 1137 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGT 1137 (1549)
T ss_pred HHhhcc-eEEeeCC
Confidence 554343 4666777
No 148
>KOG0952|consensus
Probab=98.93 E-value=2.2e-10 Score=117.18 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=103.2
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
+....|+|.+.+-.+..- ..++++-+|||+|||++|.+++...+... .+.+++|++|-.+|+..-...+.+.... ++
T Consensus 925 ~~~fn~~q~~if~~~y~t-d~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~-~g 1001 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHT-DLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDEL-PG 1001 (1230)
T ss_pred hcccCCccceEEEEEeec-chhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhccc-CC
Confidence 346678899888887765 68999999999999999999988877654 5578999999999998776666654433 36
Q ss_pred cEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEechhhHhhc
Q psy11867 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDEah~l~~~ 261 (399)
+++.-..|...-+.......+|+|+||++.......+... .++++..+|+||.|++.+.
T Consensus 1002 ~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 6666666555444333456789999999987765544433 3778999999999998753
No 149
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.84 E-value=2.8e-08 Score=90.39 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=94.8
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
-..|++.|..+.-.+.. |+ |++..||=|||++..+|+.-....+ ..+=|++.+.-||..=++++..+...+ +
T Consensus 75 g~~p~~vQll~~l~L~~--G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHK--GR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHHHT--TS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhccc--ce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 34799999999977755 34 9999999999999988877666543 448899999999999999999999887 8
Q ss_pred cEEEEEEcCchhh-hhhccCCcEEEeCchhHH-Hhhhcc----ccc-cCCceeEEEEechhhHh
Q psy11867 203 LSVRYAVRGENLE-RNKKITEQIIIGTPGKVL-DWGLKY----RFF-DLSKIKVFVLDEADVMI 259 (399)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~~IlV~Tp~~l~-~~~~~~----~~~-~~~~~~~lViDEah~l~ 259 (399)
+.+.....+.... +.....++|+.+|...+. +++... ... ..+.++++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999988876543 334556789999999884 333221 111 25788999999999886
No 150
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.81 E-value=1.4e-07 Score=98.56 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=103.7
Q ss_pred CChHHHHHHhhhhhc----C--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 125 APSKIQETALPTLLA----D--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~----~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
.-+.+|-.|+..+.+ . .|-=++-.|.||+|||++=.- |+..+.....+.|..|-.-.|.|..|+.+.+++-..
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 345799999988864 1 356677789999999987653 444555556778888889999999999988877432
Q ss_pred cCCCcEEEEEEcCchhh------------------------------------------h--------h----hccCCcE
Q psy11867 199 HITDLSVRYAVRGENLE------------------------------------------R--------N----KKITEQI 224 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~~~------------------------------------------~--------~----~~~~~~I 224 (399)
- .+-...+.+|+.... . . ......+
T Consensus 487 L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 487 L-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred C-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 1 111222222221000 0 0 0011249
Q ss_pred EEeCchhHHHhhhccc--cccCC--c--eeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChhHHHH
Q psy11867 225 IIGTPGKVLDWGLKYR--FFDLS--K--IKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKEVMEF 295 (399)
Q Consensus 225 lV~Tp~~l~~~~~~~~--~~~~~--~--~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~v~~~ 295 (399)
+|||++.++-.....+ ...+. . =+.|||||+|.+-. .....+.+++..+. -...++++|||+|+.+...
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~--~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP--EDLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH--HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 9999999987753222 22111 1 25799999998732 23333444444322 3678999999999875443
No 151
>KOG0384|consensus
Probab=98.76 E-value=1.9e-07 Score=97.50 Aligned_cols=256 Identities=20% Similarity=0.207 Sum_probs=150.4
Q ss_pred CCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceeh---hHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 124 YAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAA---FTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~---~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..++.+|.+.++.++.. .+.|+|+.-..|-|||+- |+-.+.+.... .|| .||++|...+.. +.+.+..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--~gp-flvvvplst~~~-W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI--HGP-FLVVVPLSTITA-WEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc--cCC-eEEEeehhhhHH-HHHHHHHHh-
Confidence 57889999999988643 479999999999999954 44444433322 233 688999876653 455555554
Q ss_pred cCCCcEEEEEEcCch---hhhh---------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchH
Q psy11867 199 HITDLSVRYAVRGEN---LERN---------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQD 266 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~---------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~ 266 (399)
.+++.+.+|... +-++ .....+++++|.+.++.-.. .+.--...++++||||+|-. -..
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN---~~~ 514 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKN---DES 514 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCc---hHH
Confidence 455555555422 1111 11256899999998865322 22222457899999999842 333
Q ss_pred HHHHHHHhCCCCCcEEEEEeeC-ChhHHHHHHhh-CCCCeEEec-------------------------------c-ccc
Q psy11867 267 FSIRIQKRLPSDCQIMLFSATY-DKEVMEFAQDM-VPNPLIIKL-------------------------------K-REE 312 (399)
Q Consensus 267 ~~~~i~~~l~~~~q~l~~SAT~-~~~v~~~~~~~-~~~p~~i~~-------------------------------~-~~~ 312 (399)
.+...+..+.-+. .++.|.|. -+.+.++.... +..|..+.. . ..+
T Consensus 515 ~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 3444455544333 46667772 22333322111 011110000 0 000
Q ss_pred ccc-cce-------------------------------------------------eEEEEEeCChhh---HH------H
Q psy11867 313 ESL-DNI-------------------------------------------------KQHYVMCKNIDE---KF------E 333 (399)
Q Consensus 313 ~~~-~~i-------------------------------------------------~~~~~~~~~~~~---k~------~ 333 (399)
.++ ... .|-|..-...+. .+ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 000 000 111111111100 11 2
Q ss_pred HHHHHhccC---------------CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy11867 334 AVSNIYGVV---------------TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGE 394 (399)
Q Consensus 334 ~l~~ll~~~---------------~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~ 394 (399)
.|..++... .+++||||.+-.+....|+++|...+++..-+-|.+..+.|.++++.|..-.
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence 333333221 3479999999999999999999999999999999999999999999998643
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.72 E-value=5e-08 Score=101.51 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCChHHHHHHhhhhh---cCC----CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 124 YAPSKIQETALPTLL---ADP----PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll---~~~----g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
.++++-|.+....+. .+. ++.+++.|+||+|||++|++|++..... .+.+++|=+.|+.|-.|+.
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHH
Confidence 478999999776664 321 4789999999999999999999876543 3446899999999999874
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.59 E-value=4.7e-07 Score=92.98 Aligned_cols=135 Identities=9% Similarity=0.114 Sum_probs=88.5
Q ss_pred EccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCch-------hhhhhcc
Q psy11867 148 QSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGEN-------LERNKKI 220 (399)
Q Consensus 148 ~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 220 (399)
.+.+|||||.+|+-.+-..+.. +.++|||+|...|+.|+.+.++..+. ...+....++.. +.+...+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 3446999999999877766654 44599999999999999999987653 123444444322 2222355
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC----CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHH
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ----GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFA 296 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~----~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~ 296 (399)
...|+|||-..+ ..-+.+++++|+||=|.-.=.+ .+..--..+.+....++.+|+-|||-+-+....+
T Consensus 240 ~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 240 QARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 678999996543 2357899999999988542111 1222222333333468899999999765544443
No 154
>KOG1002|consensus
Probab=98.56 E-value=2.3e-05 Score=75.20 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=83.0
Q ss_pred CCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 124 YAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
..+-|+|.+.+-.+... .-..-|+....|.|||....--++.. ..+...||++|+.+|. |+.+++.+....
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra~tLVvaP~VAlm-QW~nEI~~~T~g- 256 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRAPTLVVAPTVALM-QWKNEIERHTSG- 256 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccCCeeEEccHHHHH-HHHHHHHHhccC-
Confidence 35678999988777653 12334666889999997765444442 2334499999999985 677778877653
Q ss_pred CCcEEEEEEcCchhhh-hhccCCcEEEeCchhHHHhhhcccc-c-----------cCCce--eEEEEechhhH
Q psy11867 201 TDLSVRYAVRGENLER-NKKITEQIIIGTPGKVLDWGLKYRF-F-----------DLSKI--KVFVLDEADVM 258 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~IlV~Tp~~l~~~~~~~~~-~-----------~~~~~--~~lViDEah~l 258 (399)
.+++....|...... ....+.+++.+|...+-+...+... + -+.++ --+|+||||-+
T Consensus 257 -slkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 257 -SLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred -ceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 456555555543322 2245678999999887665443211 1 13333 45999999965
No 155
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.53 E-value=9.3e-07 Score=91.46 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=58.9
Q ss_pred HHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 331 KFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 331 k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+...+...+... ...++||||++++.|+.|++.|...|+++..+||++++.+|..+++.|+.|++.|||
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV 501 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEE
Confidence 344444444332 346899999999999999999999999999999999999999999999999999984
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.53 E-value=6.1e-07 Score=96.16 Aligned_cols=139 Identities=19% Similarity=0.123 Sum_probs=92.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhc-c
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKK-I 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 220 (399)
++..+|.--+|||||+..+..+-..+.. ...+.+++|+-.++|-.|+.+.++.+........ -...+..+.+... .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDG 349 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHhcC
Confidence 5678999999999998876655444443 6788999999999999999999999876542211 2222333333333 3
Q ss_pred CCcEEEeCchhHHHhhhccccccC-CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeC
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDL-SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~-~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~ 288 (399)
...|+|+|-..|-........... ++=-+||+|||||- .+...-..+...+ ++...++||.|.
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS----Q~G~~~~~~~~~~-~~a~~~gFTGTP 413 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS----QYGELAKLLKKAL-KKAIFIGFTGTP 413 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc----cccHHHHHHHHHh-ccceEEEeeCCc
Confidence 447999999998776544311111 22237899999994 2222223334444 358899999993
No 157
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=5.4e-07 Score=94.43 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=84.3
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHH-----HHhc-cCCCcEEEE--EEcCc--
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA-----KMGK-HITDLSVRY--AVRGE-- 212 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~-----~~~~-~~~~~~~~~--~~~~~-- 212 (399)
.++.+.++||||||.+|+-.|+..... .+..+.||+||+.++-..+...+. .... .+.+..+.+ ..++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 589999999999999999888776544 345679999999999888776654 1111 122222222 22221
Q ss_pred -----hhhhh----------hccCCcEEEeCchhHHHhhhcccc------------c-cCCce-eEEEEechhhHhhcCC
Q psy11867 213 -----NLERN----------KKITEQIIIGTPGKVLDWGLKYRF------------F-DLSKI-KVFVLDEADVMIATQG 263 (399)
Q Consensus 213 -----~~~~~----------~~~~~~IlV~Tp~~l~~~~~~~~~------------~-~~~~~-~~lViDEah~l~~~~~ 263 (399)
.+... .....+|+|.|-+.|..-...... + .++.. =+||+||+|++-..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 11111 112458999999988542110000 0 11111 36999999998431
Q ss_pred chHHHHHHHHhCCCCCcEEEEEeeCCh
Q psy11867 264 HQDFSIRIQKRLPSDCQIMLFSATYDK 290 (399)
Q Consensus 264 ~~~~~~~i~~~l~~~~q~l~~SAT~~~ 290 (399)
......| ..+.+.+ ++.||||.+.
T Consensus 217 -~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred -hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2223344 4444433 5679999986
No 158
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.41 E-value=2.3e-06 Score=69.55 Aligned_cols=71 Identities=37% Similarity=0.573 Sum_probs=63.9
Q ss_pred hhHHHHHHHHhccCC--CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVVT--IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~~--~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|...+.+++.... .+++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|..+||+
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili 83 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLV 83 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 368888888877664 67999999999999999999998889999999999999999999999999988874
No 159
>KOG4439|consensus
Probab=98.37 E-value=8.2e-06 Score=81.19 Aligned_cols=132 Identities=23% Similarity=0.184 Sum_probs=82.3
Q ss_pred CChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhh-----CCC--CCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRV-----NPS--IQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l-----~~~--~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
.+-|+|..++..++-. ++...|+....|-|||+...--+++.- ... ......|||||- .|..|++.++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 4568999999888632 467788889999999987655555432 111 111248999997 56677777666
Q ss_pred HHhccCCCcEEEEEEcCch--hhhhhccCCcEEEeCchhHHHh----hhccccc-cCCc--eeEEEEechhhH
Q psy11867 195 KMGKHITDLSVRYAVRGEN--LERNKKITEQIIIGTPGKVLDW----GLKYRFF-DLSK--IKVFVLDEADVM 258 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~IlV~Tp~~l~~~----~~~~~~~-~~~~--~~~lViDEah~l 258 (399)
.-...- .+++...+|... .........+|||+|+.-+..- ....+.- .+.+ ...||+||||.+
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~I 475 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNI 475 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhh
Confidence 554432 567776666653 2222245678999999765441 0000100 1222 356999999965
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.37 E-value=1.9e-06 Score=75.45 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=75.0
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH-------HHHHHH
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG-------EVVAKM 196 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~-------~~~~~~ 196 (399)
...+.-|..++.+++. ..-+++.||.|||||+.++..+++.+.. ....+.+|.-|..+....+. +.+..+
T Consensus 3 ~p~~~~Q~~~~~al~~--~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp ---SHHHHHHHHHHHH---SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TT
T ss_pred cCCCHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 3457899999999997 5899999999999999999999988876 46677888889876422211 111111
Q ss_pred h----ccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHH
Q psy11867 197 G----KHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQ 272 (399)
Q Consensus 197 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~ 272 (399)
. ..+..+. +....+.. .....|-+..+..+ +.+. +++ .++|+|||+.+. ...+..++
T Consensus 80 ~~p~~d~l~~~~-----~~~~~~~~-~~~~~Ie~~~~~~i-----RGrt--~~~-~~iIvDEaQN~t-----~~~~k~il 140 (205)
T PF02562_consen 80 LRPIYDALEELF-----GKEKLEEL-IQNGKIEIEPLAFI-----RGRT--FDN-AFIIVDEAQNLT-----PEELKMIL 140 (205)
T ss_dssp THHHHHHHTTTS------TTCHHHH-HHTTSEEEEEGGGG-----TT----B-S-EEEEE-SGGG-------HHHHHHHH
T ss_pred HHHHHHHHHHHh-----ChHhHHHH-hhcCeEEEEehhhh-----cCcc--ccc-eEEEEecccCCC-----HHHHHHHH
Confidence 0 0000000 11111111 12334666555432 1122 222 799999999873 34566788
Q ss_pred HhCCCCCcEEEEEe
Q psy11867 273 KRLPSDCQIMLFSA 286 (399)
Q Consensus 273 ~~l~~~~q~l~~SA 286 (399)
.++..+++++++.-
T Consensus 141 TR~g~~skii~~GD 154 (205)
T PF02562_consen 141 TRIGEGSKIIITGD 154 (205)
T ss_dssp TTB-TT-EEEEEE-
T ss_pred cccCCCcEEEEecC
Confidence 88888888877643
No 161
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.36 E-value=2e-06 Score=77.38 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=49.1
Q ss_pred ChHHHHHHhhhhhcCCCCc-EEEEccCCCCceehhHHHHHHhh------CCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 126 PSKIQETALPTLLADPPHN-MIAQSQSGTGKTAAFTLTMLSRV------NPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~-vi~~a~TGsGKT~~~~l~il~~l------~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
+++-|.+|+..++. ... .+++||+|||||.... .++..+ .....+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~--~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALS--SNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCT--SSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHc--CCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999998 466 9999999999995433 333333 1134667899999999999999888877
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.31 E-value=2.7e-06 Score=74.71 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=71.1
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
++++-|.+++..++....+-.+++|+.|+|||.+. -.+...+.. .+.++++++||...+..+.+... +.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~~v~~~apT~~Aa~~L~~~~~--------~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGKRVIGLAPTNKAAKELREKTG--------IE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT--EEEEESSHHHHHHHHHHHT--------S-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCCeEEEECCcHHHHHHHHHhhC--------cc
Confidence 36889999999998753456788899999999643 334444443 34679999999988876555421 11
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccc---cccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCC-CCc
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYR---FFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS-DCQ 280 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~---~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~-~~q 280 (399)
..|-.+++....... ...+...+++|||||-.+. ...+..++...+. ..+
T Consensus 70 ---------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~-----~~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 70 ---------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD-----SRQLARLLRLAKKSGAK 123 (196)
T ss_dssp ---------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B-----HHHHHHHHHHS-T-T-E
T ss_pred ---------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC-----HHHHHHHHHHHHhcCCE
Confidence 112222221100000 0014456799999998863 2345566666665 566
Q ss_pred EEEEEe
Q psy11867 281 IMLFSA 286 (399)
Q Consensus 281 ~l~~SA 286 (399)
++++-=
T Consensus 124 lilvGD 129 (196)
T PF13604_consen 124 LILVGD 129 (196)
T ss_dssp EEEEE-
T ss_pred EEEECC
Confidence 666543
No 163
>KOG2340|consensus
Probab=98.31 E-value=1.3e-05 Score=77.54 Aligned_cols=272 Identities=18% Similarity=0.225 Sum_probs=163.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccC-CCCc--eehhHHHHHHhhC----------------------------CCCC
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQS-GTGK--TAAFTLTMLSRVN----------------------------PSIQ 172 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~T-GsGK--T~~~~l~il~~l~----------------------------~~~~ 172 (399)
..+|+.|.+.+..+.+ -+|++..-.| +.|+ +-.|.+-++.++. ++..
T Consensus 215 ~pltalQ~~L~~~m~~--YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFN--YRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred CcchHHHHHHHHHHHh--hhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 5789999999999888 5888764322 3344 4567777777651 2234
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEE--------EEEEcC---------------------c---------hh
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSV--------RYAVRG---------------------E---------NL 214 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~--------~~~~~~---------------------~---------~~ 214 (399)
.|++|||||+|+-|..+...+..+......-+. ..-++| . .+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 688999999999999999888877433211000 001111 0 00
Q ss_pred hhh------hccCCcEEEeCchhHHHhhh----cccccc-CCceeEEEEechhhHhhcCCchHHHHHHHHhC---CCC--
Q psy11867 215 ERN------KKITEQIIIGTPGKVLDWGL----KYRFFD-LSKIKVFVLDEADVMIATQGHQDFSIRIQKRL---PSD-- 278 (399)
Q Consensus 215 ~~~------~~~~~~IlV~Tp~~l~~~~~----~~~~~~-~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l---~~~-- 278 (399)
.+. .-...+|+||+|=-|.-.+. +.+.++ ++.+.++|||-||.|+.. .+. .+..++..| |..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwE-hl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWE-HLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHH-HHHHHHHHhhcCccccc
Confidence 000 01234799999976644433 122332 788999999999999853 333 333444444 221
Q ss_pred -------------------CcEEEEEeeCChhHHHHHHhhCCC---CeEEecccccccc----cceeEEE--EEeCCh--
Q psy11867 279 -------------------CQIMLFSATYDKEVMEFAQDMVPN---PLIIKLKREEESL----DNIKQHY--VMCKNI-- 328 (399)
Q Consensus 279 -------------------~q~l~~SAT~~~~v~~~~~~~~~~---p~~i~~~~~~~~~----~~i~~~~--~~~~~~-- 328 (399)
+|+++||+--.+....+...+..+ .+..+-.....+. -.+.|.+ +.|.+.
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 488899887666555555444322 2221111111111 1222222 122221
Q ss_pred --hhHHHHHHHHhccCC----CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 --DEKFEAVSNIYGVVT----IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 --~~k~~~l~~ll~~~~----~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+..+.....-+.-.- ..-++||.++--.--++.++|.+.++....+|.=.++..-.++-+.|..|..+||+
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlL 607 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLL 607 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEE
Confidence 334443333222111 23479999999999999999999988888888877788888888999999998874
No 164
>KOG0391|consensus
Probab=98.15 E-value=7.8e-06 Score=85.22 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=101.7
Q ss_pred CChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhh-CCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 125 APSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRV-NPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l-~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
.++.||...+.++.. ...-|-|+....|-|||.--. .++.++ ....+-+=-|||+||.-+. .+.-+|++ +++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtI-SllAhLACeegnWGPHLIVVpTsviL-nWEMElKR---wcP 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTI-SLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKR---WCP 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHH-HHHHHHHhcccCCCCceEEeechhhh-hhhHHHhh---hCC
Confidence 456789988887732 126788999999999997533 334333 2222222358999997654 34444554 567
Q ss_pred CcEEEEEEcCchhhhhhc------cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC
Q psy11867 202 DLSVRYAVRGENLERNKK------ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL 275 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~------~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l 275 (399)
++++-..+|.....+.++ +..||.|+++..+..-+ ..|.-++.+|+|+||||.+- +|.......+-.+
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrkrWqyLvLDEaqnIK---nfksqrWQAllnf 763 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRKRWQYLVLDEAQNIK---NFKSQRWQALLNF 763 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH---HHHHhhccceeehhhhhhhc---chhHHHHHHHhcc
Confidence 889888888765444332 23489999988776543 45566788999999999983 5665555555455
Q ss_pred CCCCcEEEEEee-CChhHHH
Q psy11867 276 PSDCQIMLFSAT-YDKEVME 294 (399)
Q Consensus 276 ~~~~q~l~~SAT-~~~~v~~ 294 (399)
+..+ .++++.| +-+.+.+
T Consensus 764 nsqr-RLLLtgTPLqNslmE 782 (1958)
T KOG0391|consen 764 NSQR-RLLLTGTPLQNSLME 782 (1958)
T ss_pred chhh-eeeecCCchhhHHHH
Confidence 4444 5566666 4444333
No 165
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.10 E-value=2.4e-05 Score=71.70 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=103.0
Q ss_pred ChHHHHHHhhhhhc-------C-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 126 PSKIQETALPTLLA-------D-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 126 p~~iQ~~ai~~ll~-------~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
++..|.+++-.... + .+...++--.||.||--...--|++.+.++ ..++|.++.+..|-....+-++.++
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~vwvS~s~dL~~Da~RDl~DIG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAVWVSVSNDLKYDAERDLRDIG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CCceEEEECChhhhhHHHHHHHHhC
Confidence 46777777754432 1 246778888899999866655667766653 3469999999999999999999987
Q ss_pred ccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc----ccc-----cC--CceeEEEEechhhHhhcCC---
Q psy11867 198 KHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY----RFF-----DL--SKIKVFVLDEADVMIATQG--- 263 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~----~~~-----~~--~~~~~lViDEah~l~~~~~--- 263 (399)
.. .+.+.-...- ...........|+.+|...|....... ..+ ++ ..=.++||||||.+-....
T Consensus 116 ~~--~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 192 (303)
T PF13872_consen 116 AD--NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK 192 (303)
T ss_pred CC--cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc
Confidence 65 2222211110 000111234469999999887653211 000 11 1235899999999854322
Q ss_pred ----chHHHHHHHHhCCCCCcEEEEEeeCChhHHHH
Q psy11867 264 ----HQDFSIRIQKRLPSDCQIMLFSATYDKEVMEF 295 (399)
Q Consensus 264 ----~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~ 295 (399)
....+..+...+| +.+++.+|||-..+..++
T Consensus 193 ~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 193 KPSKTGIAVLELQNRLP-NARVVYASATGASEPRNM 227 (303)
T ss_pred cccHHHHHHHHHHHhCC-CCcEEEecccccCCCcee
Confidence 1134455667775 666999999977665544
No 166
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.10 E-value=1.4e-05 Score=76.96 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=67.9
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
+-++|.|..|||||+..+--+ ..+.....+..+++++++..|...+++.+...... ...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~-~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~~ 60 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLA-KELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------KLK 60 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHH-HHhhccccCCceEEEEecchHHHHHHHHHhhhccc--------------------chh
Confidence 357899999999998766433 33322335667999999999998888777654300 001
Q ss_pred cEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC------CchHHHHHHHHh
Q psy11867 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ------GHQDFSIRIQKR 274 (399)
Q Consensus 223 ~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~------~~~~~~~~i~~~ 274 (399)
...+..+..+..... .........+++||||||+|.... .....+..+++.
T Consensus 61 ~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 61 KSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 123334444443321 122345688999999999998621 123455555554
No 167
>KOG0386|consensus
Probab=98.04 E-value=1.3e-05 Score=82.73 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=53.8
Q ss_pred hHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy11867 330 EKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGE 394 (399)
Q Consensus 330 ~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~ 394 (399)
.|+..|-.++-.. .+++++.||.-..-...+-.+|.-.+++...+-|....++|...++.|..-.
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 4666666655433 3479999999988888888999888999999999999999999999998643
No 168
>PRK10536 hypothetical protein; Provisional
Probab=98.02 E-value=4.1e-05 Score=69.04 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH-----------HH
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI-----------QI 189 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~-----------Q~ 189 (399)
.++..-+..|...+..+.+ ...+++.|++|||||+......++.+... ...+++|.-|+.+... -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 4566678899999998887 57999999999999998887777666442 3445666667754322 12
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhhhc-cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERNKK-ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFS 268 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 268 (399)
.-++..+.+.+.. ..+......... ....|-|.....+ +.+. + +-+++|+|||+.+- ..++
T Consensus 132 ~p~~~pi~D~L~~-----~~~~~~~~~~~~~~~~~Iei~~l~ym-----RGrt--l-~~~~vIvDEaqn~~-----~~~~ 193 (262)
T PRK10536 132 APYFRPVYDVLVR-----RLGASFMQYCLRPEIGKVEIAPFAYM-----RGRT--F-ENAVVILDEAQNVT-----AAQM 193 (262)
T ss_pred HHHHHHHHHHHHH-----HhChHHHHHHHHhccCcEEEecHHHh-----cCCc--c-cCCEEEEechhcCC-----HHHH
Confidence 2222222222111 011122221111 1223545443321 2222 2 22699999999973 2566
Q ss_pred HHHHHhCCCCCcEEEE
Q psy11867 269 IRIQKRLPSDCQIMLF 284 (399)
Q Consensus 269 ~~i~~~l~~~~q~l~~ 284 (399)
..++..+..+++++++
T Consensus 194 k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 194 KMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHhhcCCCCEEEEe
Confidence 7788888888887764
No 169
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.01 E-value=7.8e-06 Score=85.36 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=61.0
Q ss_pred HHcCCCCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 119 YEMGFYAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 119 ~~~g~~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
..+....|++.|.+.+..+... .++.+++.||||+|||++|++|++...... +..++|.++|+.|-.|+.+....+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CCcEEEECCCHHHHHHHHHhhcch
Confidence 3456678999999998666421 267799999999999999999999887553 256999999999999988766553
No 170
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=1.1e-05 Score=84.78 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=64.1
Q ss_pred cCCCCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 121 MGFYAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+-|..++|.|.+.+..+... .+.++++.||||+|||++.+.|++.........++++|.+.|..-..|..++++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 34666799999988777542 389999999999999999999999877654445789999999999999999999853
No 171
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.94 E-value=2e-05 Score=82.61 Aligned_cols=127 Identities=21% Similarity=0.162 Sum_probs=94.2
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+++|...--.+. +.-|+...||-|||+++.+|+.-....+.. +-||+.+--||..=.+++..+..++ +++
T Consensus 169 ~~yDVQliGgivLh----~G~IAEM~TGEGKTLvAtlp~yLnAL~Gkg---VHvVTVNDYLA~RDaewmgply~fL-GLs 240 (1112)
T PRK12901 169 VHYDVQLIGGVVLH----QGKIAEMATGEGKTLVATLPVYLNALTGNG---VHVVTVNDYLAKRDSEWMGPLYEFH-GLS 240 (1112)
T ss_pred cccchHHhhhhhhc----CCceeeecCCCCchhHHHHHHHHHHHcCCC---cEEEEechhhhhccHHHHHHHHHHh-CCc
Confidence 57777766554443 556889999999999999998766655433 7788888899998889999988887 888
Q ss_pred EEEEEc-C-chhhhhhccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHh
Q psy11867 205 VRYAVR-G-ENLERNKKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~-~-~~~~~~~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~ 259 (399)
+.+... . ....+.....++|..+|...| .+++..+- ....+.+.|.||||+|-++
T Consensus 241 vg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 241 VDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred eeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 887765 3 344555577899999998876 34433221 2235678999999999764
No 172
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=2.8e-05 Score=56.86 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=38.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhC--CCCCCCeEEEEeCcHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVN--PSIQEPQVLCLAPTYELAIQIGEVV 193 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~--~~~~~~~~lil~Pt~~La~Q~~~~~ 193 (399)
+.-+++.||.|||||...+-.+...+. ... +.++++++||+..+..+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 355666999999999766655555552 223 668999999999999888877
No 173
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.89 E-value=0.0001 Score=75.18 Aligned_cols=142 Identities=22% Similarity=0.256 Sum_probs=84.9
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehh--HHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAF--TLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~--~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
..+|+.|+...+. ++-.++.|+.|||||... ++..+..........++++.+||-.-|..+.+.+......+.
T Consensus 147 ~~~Qk~A~~~al~--~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~--- 221 (586)
T TIGR01447 147 QNWQKVAVALALK--SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLA--- 221 (586)
T ss_pred cHHHHHHHHHHhh--CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccc---
Confidence 3799999999998 589999999999999653 333333222211235799999998888877776655432221
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcccc-----ccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRF-----FDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~-----~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
.. ... .....+-..|-.+|+........ -+.-.+++||||||-++- ...+..+++.+++.+
T Consensus 222 ~~-----~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 222 AA-----EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-----LPLMAKLLKALPPNT 287 (586)
T ss_pred cc-----hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-----HHHHHHHHHhcCCCC
Confidence 00 000 00001123343344332111011 123357899999997752 345667888888888
Q ss_pred cEEEEEee
Q psy11867 280 QIMLFSAT 287 (399)
Q Consensus 280 q~l~~SAT 287 (399)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 88876433
No 174
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00044 Score=71.58 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=92.7
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|..+|...--.+. ..-++...||-|||+++.+|+.-....+ ..+.+++-..-||..-.+++.++..++ +++
T Consensus 80 ~~~dVQliG~i~lh----~g~iaEM~TGEGKTL~atlp~ylnaL~g---kgVhvVTvNdYLA~RDae~m~~l~~~L-Gls 151 (822)
T COG0653 80 RHFDVQLLGGIVLH----LGDIAEMRTGEGKTLVATLPAYLNALAG---KGVHVVTVNDYLARRDAEWMGPLYEFL-GLS 151 (822)
T ss_pred ChhhHHHhhhhhhc----CCceeeeecCCchHHHHHHHHHHHhcCC---CCcEEeeehHHhhhhCHHHHHHHHHHc-CCc
Confidence 45566665544332 5578889999999999999887554443 338888999999999999999998887 888
Q ss_pred EEEEEcCchhh-hhhccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHh
Q psy11867 205 VRYAVRGENLE-RNKKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~ 259 (399)
+.+...+.... +.....++|..+|...| .+++..+ .......+.+.|+||+|-++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 88887776554 44467889999998877 3332221 22235578999999999663
No 175
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.80 E-value=0.00013 Score=74.59 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=85.3
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehh--HHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAF--TLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~--~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.++|+.|+-..+. .+-.++.|++|+|||... ++..+..... ....++++.+||..-|..+.+.+......++ +.
T Consensus 154 ~d~Qk~Av~~a~~--~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALT--RRISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLP-LT 229 (615)
T ss_pred CHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccc-cc
Confidence 5899999999888 589999999999999654 2222322221 1235688889999888888776655433221 00
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccc-----cccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYR-----FFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~-----~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
. ........-..|--+|+....... .-+.-.++++|||||-++ -...+..+++.+++.+
T Consensus 230 ------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-----d~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 ------D-----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-----DLPMMARLIDALPPHA 293 (615)
T ss_pred ------h-----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-----cHHHHHHHHHhcccCC
Confidence 0 000000011233333333211111 112335689999999775 2455667888899999
Q ss_pred cEEEEEee
Q psy11867 280 QIMLFSAT 287 (399)
Q Consensus 280 q~l~~SAT 287 (399)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 98887544
No 176
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.79 E-value=0.00014 Score=64.26 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=92.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.|+-..-+.+++=.+. .++ -.++.|.+....+.+. .|.|.+.+.-+|.|||.+- +|++..+..+. ..-+.+++|.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg-~~LvrviVpk 79 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG-SRLVRVIVPK 79 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC-CcEEEEEcCH
Confidence 4555555566664443 223 5789999999988863 3689999999999999874 57777766542 2346666774
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEE--EcCchhh-----------hhhccCCcEEEeCchhHHHhhhccc------c--
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYA--VRGENLE-----------RNKKITEQIIIGTPGKVLDWGLKYR------F-- 241 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~IlV~Tp~~l~~~~~~~~------~-- 241 (399)
+|..|+...+..-...+-+-.+... ....... ........|+++||+.+++.....- .
T Consensus 80 -~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 80 -ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred -HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 7999998888765443322222221 1111110 0112344699999999877532210 0
Q ss_pred ---------ccCCceeEEEEechhhHhh
Q psy11867 242 ---------FDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 242 ---------~~~~~~~~lViDEah~l~~ 260 (399)
-++.....=|+||+|..+.
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0123344568888887654
No 177
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.00024 Score=74.47 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..+++-|++|+..+.. ++-+++.|+.|||||...- .++..+........+++++||-.-|..+.+.. +.
T Consensus 322 ~~l~~~Q~~Ai~~~~~--~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--------g~ 390 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ--HKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--------GL 390 (720)
T ss_pred CCCCHHHHHHHHHHHh--CCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--------CC
Confidence 4789999999999987 5799999999999996432 33444433221245888899987776544321 10
Q ss_pred EEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc----ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY----RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~----~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
. . .|-.+++.+.... ..-.....++||+|||+++- ...+..+++.++..+
T Consensus 391 ~------a---------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd-----~~~~~~Ll~~~~~~~ 444 (720)
T TIGR01448 391 T------A---------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD-----TWLALSLLAALPDHA 444 (720)
T ss_pred c------c---------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC-----HHHHHHHHHhCCCCC
Confidence 0 0 1222222210000 00012356899999999973 234567777888888
Q ss_pred cEEEEEee
Q psy11867 280 QIMLFSAT 287 (399)
Q Consensus 280 q~l~~SAT 287 (399)
+++++.=+
T Consensus 445 rlilvGD~ 452 (720)
T TIGR01448 445 RLLLVGDT 452 (720)
T ss_pred EEEEECcc
Confidence 88887544
No 178
>KOG1802|consensus
Probab=97.69 E-value=0.0002 Score=71.18 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=61.4
Q ss_pred HHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 119 YEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 119 ~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
...|+.+++.-|..|+..+|. ..-.++++|+|+|||....--+.+.+.. ....+||.+|+.--++|+.+.+.+.+
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~--rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQ--RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred cCCCchhhchHHHHHHHHHHc--CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC
Confidence 345667888999999999998 4778999999999999877655555554 45569999999999999999887764
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.68 E-value=0.00016 Score=73.82 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc-----CCCcEEEEEEcCchhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH-----ITDLSVRYAVRGENLER 216 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 216 (399)
.-|+=|.+.||+|||.+|+-.|...- +...-.+.+|+|||.+.-.-+....+....+ +.+.+.....-......
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLh-k~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~ 152 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELH-KKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEK 152 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHH-HHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHH
Confidence 56788889999999999987666532 2334456899999998766544333332222 22233333332222222
Q ss_pred h---hccCCcEEEeCchhHHHh------hh-----ccccc--------cCCce-eEEEEechhhHhhcCCchHHHHHHHH
Q psy11867 217 N---KKITEQIIIGTPGKVLDW------GL-----KYRFF--------DLSKI-KVFVLDEADVMIATQGHQDFSIRIQK 273 (399)
Q Consensus 217 ~---~~~~~~IlV~Tp~~l~~~------~~-----~~~~~--------~~~~~-~~lViDEah~l~~~~~~~~~~~~i~~ 273 (399)
. ....+.+++.|...+..- +. ....+ .+..+ -.+|+||-|+|... ......+.
T Consensus 153 ~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~---~k~~~~i~- 228 (985)
T COG3587 153 FKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD---DKTYGAIK- 228 (985)
T ss_pred HhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc---hHHHHHHH-
Confidence 1 134556777765544221 00 00000 01111 26999999999642 11222222
Q ss_pred hCCCCCcEEEEEeeCChhHH
Q psy11867 274 RLPSDCQIMLFSATYDKEVM 293 (399)
Q Consensus 274 ~l~~~~q~l~~SAT~~~~v~ 293 (399)
.+ ...-++=|+||+++...
T Consensus 229 ~l-~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 229 QL-NPLLILRFGATFKDEYN 247 (985)
T ss_pred hh-CceEEEEecccchhhhc
Confidence 22 13336679999987655
No 180
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.52 E-value=0.00017 Score=67.90 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=76.8
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
+++-|.+++.. . .++++|.|..|||||.+.+.-++..+... ....++|++++|+..|..+.+.+...........
T Consensus 1 l~~eQ~~~i~~-~---~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~ 76 (315)
T PF00580_consen 1 LTDEQRRIIRS-T---EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES 76 (315)
T ss_dssp S-HHHHHHHHS-----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC
T ss_pred CCHHHHHHHhC-C---CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc
Confidence 47889999987 3 49999999999999998777666666544 4556799999999999999998888654320000
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccC-CceeEEEEechh
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDL-SKIKVFVLDEAD 256 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~-~~~~~lViDEah 256 (399)
.....+.........+.|+|-..+...+.+...... -.-.+-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011112223345888888777654433211111 123456777776
No 181
>KOG0989|consensus
Probab=97.49 E-value=0.0005 Score=62.78 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=38.3
Q ss_pred cCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeC---ChhHHHHHHhhCCCC
Q psy11867 243 DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY---DKEVMEFAQDMVPNP 303 (399)
Q Consensus 243 ~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~---~~~v~~~~~~~~~~p 303 (399)
....++.+|+||||.|.. .....+.+.+...+...++++.+.-+ +..+..-+.+|...+
T Consensus 126 ~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred CCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 356678999999999964 34445556666666777777776653 344444455554443
No 182
>KOG1803|consensus
Probab=97.48 E-value=0.00061 Score=67.43 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=52.7
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVV 193 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 193 (399)
.+.+-|..|+....+. ..-.+++||+|+|||..-..-+.+.+.+ +.++||.+||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~-k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINN-KDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhcc-CCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHh
Confidence 5678899999998875 3667899999999999877766666654 357999999999888888754
No 183
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.40 E-value=0.00026 Score=66.10 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=57.0
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
..|+..-+..|.-|+..++...=.=|.+.++.|||||+.++.+.+.+....+...+.++-=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc
Confidence 3678778889999999999854456778899999999999999999988777777788887887766443
No 184
>KOG0388|consensus
Probab=97.27 E-value=0.00039 Score=69.67 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=91.5
Q ss_pred ChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 126 PSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 126 p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
+-.+|...+..+.+ +.|-|.|+....|-|||+..+--+.+......--+-.|||+|...|- .+...+..++|.+
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~----NWaqEisrFlP~~ 643 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLH----NWAQEISRFLPSF 643 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHh----HHHHHHHHhCccc
Confidence 34678888777643 24899999999999999876543333333332223368899987663 4444455556677
Q ss_pred EEEEEEcCchhhhh------------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHH
Q psy11867 204 SVRYAVRGENLERN------------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRI 271 (399)
Q Consensus 204 ~~~~~~~~~~~~~~------------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i 271 (399)
++.-.-|+...... .....||+|++.+.+..- .+.+.--+.++.|+|||+.+-.. ...-+..+
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD---eky~qkvKWQYMILDEAQAIKSS--sS~RWKtL 718 (1185)
T KOG0388|consen 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD---EKYLQKVKWQYMILDEAQAIKSS--SSSRWKTL 718 (1185)
T ss_pred eeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech---HHHHHhhhhhheehhHHHHhhhh--hhhHHHHH
Confidence 76655555432221 123568999999876432 12222224578999999998543 22222333
Q ss_pred HHhCCCCCcEEEEEeeC
Q psy11867 272 QKRLPSDCQIMLFSATY 288 (399)
Q Consensus 272 ~~~l~~~~q~l~~SAT~ 288 (399)
+.. +.+-.++++.|.
T Consensus 719 LsF--~cRNRLLLTGTP 733 (1185)
T KOG0388|consen 719 LSF--KCRNRLLLTGTP 733 (1185)
T ss_pred hhh--hccceeeecCCc
Confidence 332 234468888883
No 185
>KOG0921|consensus
Probab=97.26 E-value=0.0016 Score=67.15 Aligned_cols=249 Identities=19% Similarity=0.215 Sum_probs=134.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCC-Ce-EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQE-PQ-VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKK 219 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~-~~-~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (399)
.+-+++-+.||.|||.-+.--+|+.+..+..+ .+ +.+--|++-.+.-+.+.+.+--..-.+-.+.+...-.+... +
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~p--r 470 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATP--R 470 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccc--c
Confidence 57778889999999999988888877654332 22 44444888877777665544321111112222222211111 1
Q ss_pred cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC---CCCCcEEEEEeeCChh-----
Q psy11867 220 ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL---PSDCQIMLFSATYDKE----- 291 (399)
Q Consensus 220 ~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l---~~~~q~l~~SAT~~~~----- 291 (399)
.-.-|+.||-+-++..+.. -+..+.++++||.|..-- -.+++..+++-+ .....++++|||+..+
T Consensus 471 pyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv---~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~ 543 (1282)
T KOG0921|consen 471 PYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDV---DTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNF 543 (1282)
T ss_pred cccceeeeccchhhhhhhh----cccccccccchhhhhhcc---chHHHHHHHHhhhccchhhhhhhhhcccchhhhhhh
Confidence 1224999999999887533 256778999999997532 223333332222 2233444445543221
Q ss_pred ---------------HHHHHHhhCCCCeEEe-----------cccccccccc--eeEEEEEeCC---------------h
Q psy11867 292 ---------------VMEFAQDMVPNPLIIK-----------LKREEESLDN--IKQHYVMCKN---------------I 328 (399)
Q Consensus 292 ---------------v~~~~~~~~~~p~~i~-----------~~~~~~~~~~--i~~~~~~~~~---------------~ 328 (399)
+..|....+..+.... .........+ -+..-..|++ .
T Consensus 544 f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~ 623 (1282)
T KOG0921|consen 544 FSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEK 623 (1282)
T ss_pred hccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhh
Confidence 2222222211111100 0000000000 0000011110 0
Q ss_pred ---hhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHC-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 329 ---DEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKE-------GLNVGLLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 329 ---~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
..-.+++...+... -.+-+++|-+-......|...|... .+++..+|+..+..+...+.+.-..|..+|
T Consensus 624 d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~ki 703 (1282)
T KOG0921|consen 624 DIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKI 703 (1282)
T ss_pred cchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccccc
Confidence 11122222222222 2367899999998888888887654 467899999999999999998888888877
Q ss_pred cC
Q psy11867 398 YS 399 (399)
Q Consensus 398 LV 399 (399)
++
T Consensus 704 i~ 705 (1282)
T KOG0921|consen 704 IL 705 (1282)
T ss_pred cc
Confidence 63
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.21 E-value=0.0007 Score=54.93 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
++.+++.|++|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 57899999999999976543
No 187
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.00071 Score=61.77 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
+.++++.||+|+|||....-
T Consensus 98 ~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred CceEEEEeCCCCchHHHHHH
Confidence 78999999999999976553
No 188
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.15 E-value=0.0038 Score=65.83 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=45.9
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
..+++-|..|+..++.+ ++-++++|+.|+|||...- .+...+.. .+.++++++||---|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s-~~~~il~G~aGTGKTtll~-~i~~~~~~--~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS-GDIAVVVGRAGTGKSTMLK-AAREAWEA--AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcC-CCEEEEEecCCCCHHHHHH-HHHHHHHh--CCCeEEEEeCcHHHHHHHH
Confidence 35899999999999875 4678999999999995532 33433433 3567999999976655443
No 189
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.00049 Score=60.10 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc---HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT---YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt---~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
|.=.++.+|+|+|||...+--+..... .+.+++++-|. +.... .+...+ ++. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~~~d~~~~~~-------~i~~~l-g~~---------~~--- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKPAIDDRYGEG-------KVVSRI-GLS---------RE--- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEeccccccccCC-------cEecCC-CCc---------cc---
Confidence 456788999999999765544433333 24568877663 21111 011111 000 00
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
.+.+..+..+++.+.. .-.+.++|||||+|.+. .+++..+.+.+.+....+++++-
T Consensus 59 ----~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~-----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ----AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD-----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ----ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC-----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0223444555554432 23567899999998752 23344455554444445555554
No 190
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0016 Score=70.34 Aligned_cols=135 Identities=16% Similarity=0.045 Sum_probs=86.4
Q ss_pred CCCChHHHHHHhhhhh---cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCC-CCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 123 FYAPSKIQETALPTLL---ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ-EPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll---~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~-~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
+..+.++|...++.+. ...+.+.++....|.|||+..+..+......... .+.++|++|+ +++.++.+.+.++..
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~ 414 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc
Confidence 3467788999887754 3346788888999999997766555442322222 3579999998 455667777766654
Q ss_pred cCCCcEEEEEEcCch-----hhhhh-ccC------CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 199 HITDLSVRYAVRGEN-----LERNK-KIT------EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~-----~~~~~-~~~------~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
.... +....|... ..... ... .+++++|.+.+.........+.-...+++|+||+|++-.
T Consensus 415 ~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 415 DLRL--VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred cccc--eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 4321 444444432 11111 111 689999999887632222344455778999999999754
No 191
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0038 Score=60.39 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=67.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhh-CCCCCCCeEEEEe--CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRV-NPSIQEPQVLCLA--PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l-~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
++.+++.||||+|||....--+.... .....+.++.+++ +.|.-+..+ ++.++..+ ++.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~------------ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVK------------ 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceE------------
Confidence 56899999999999977643222222 1111233444444 333333322 44444322 22221
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCC-CcEEEEEeeCCh-hHHHHH
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSD-CQIMLFSATYDK-EVMEFA 296 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~-~q~l~~SAT~~~-~v~~~~ 296 (399)
++-++..+...+.. +.+.++++||++.++.........+..++....+. -..+.+|||... .+.+.+
T Consensus 238 ------~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 238 ------AIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ------eeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 11234444433222 35788999999998742111112333444433333 356889999874 455555
Q ss_pred Hhh
Q psy11867 297 QDM 299 (399)
Q Consensus 297 ~~~ 299 (399)
..+
T Consensus 307 ~~~ 309 (388)
T PRK12723 307 HQF 309 (388)
T ss_pred HHh
Confidence 555
No 192
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.0048 Score=56.76 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
++++++.||+|+|||..........+.. +..+++ .+..+|..++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc---CCceee-eeHHHHHHHHH
Confidence 7999999999999995544222222222 233444 44556665553
No 193
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.07 E-value=0.043 Score=63.78 Aligned_cols=237 Identities=14% Similarity=0.170 Sum_probs=127.1
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.+++-|.+|+..++....+-.+++++.|+|||.+.- .++..+.. .+.+++.++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A~------ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLAS------ 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchhh------
Confidence 578999999999998656888999999999996532 34444433 356799999998766655543211100
Q ss_pred EEEEEcCchhhhhhc-cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEE
Q psy11867 205 VRYAVRGENLERNKK-ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIM 282 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l 282 (399)
.+.+... .....-..|...+++ +...+..-++||||||-++.. ..+..+++.. +.+.++|
T Consensus 500 --------Ti~~~l~~l~~~~~~~tv~~fl~-----~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~garvV 561 (1960)
T TIGR02760 500 --------TFITWVKNLFNDDQDHTVQGLLD-----KSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQHNSKLI 561 (1960)
T ss_pred --------hHHHHHHhhcccccchhHHHhhc-----ccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhcCCEEE
Confidence 0000000 000011112222321 122345678999999987632 3344555544 4678888
Q ss_pred EEEee--CC----hhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc-CCC-CcEEEEecch
Q psy11867 283 LFSAT--YD----KEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV-VTI-GQAMIFCHTR 354 (399)
Q Consensus 283 ~~SAT--~~----~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~-~~~-~k~IIF~~s~ 354 (399)
++.=+ ++ ..+...+...- --.+.+.........+ .+ .-.....++..+..-+.. ... .+++|+..+.
T Consensus 562 lvGD~~QL~sV~aG~~f~~L~~~g--v~t~~l~~i~rq~~~v--~i-~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~ 636 (1960)
T TIGR02760 562 LLNDSAQRQGMSAGSAIDLLKEGG--VTTYAWVDTKQQKASV--EI-SEAVDKLRVDYIASAWLDLTPDRQNSQVLATTH 636 (1960)
T ss_pred EEcChhhcCccccchHHHHHHHCC--CcEEEeecccccCcce--ee-eccCchHHHHHHHHHHHhcccccCceEEEcCCc
Confidence 87654 22 13333333321 1111221111111111 11 112223334444443333 322 3589999998
Q ss_pred HhHHHHHHHHHH----C------CCeEEEEc-CCCCHHHHHHHHHHHhcCC
Q psy11867 355 KTAAWLAEKMSK----E------GLNVGLLS-GELTVEQRLSILDRFREGE 394 (399)
Q Consensus 355 ~~a~~l~~~L~~----~------g~~v~~lh-g~~~~~~R~~v~~~F~~G~ 394 (399)
+....|...++. . ++.+..+. ..|+..++... ..|+.|.
T Consensus 637 ~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 637 REQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 887777766644 2 23344444 46888888854 7777775
No 194
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.03 E-value=0.007 Score=62.50 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
..+..-..++....+.+..-|.+.+..++..+++-+++.|.-|=|||.+.-+.+....... ...+++|.+|+.+-++.+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTL 277 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHH
Confidence 3333345577777777777888888888887666899999999999999887664333332 256799999999988777
Q ss_pred HHHHHHHhccCCCcEEEEE--EcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH
Q psy11867 190 GEVVAKMGKHITDLSVRYA--VRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
.+.+.+-...+ +.+-... ..|... ........|=+-.|.... ..-+++|||||=.+. ...
T Consensus 278 f~fa~~~l~~l-g~~~~v~~d~~g~~~-~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp-----lpl 339 (758)
T COG1444 278 FEFAGKGLEFL-GYKRKVAPDALGEIR-EVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP-----LPL 339 (758)
T ss_pred HHHHHHhHHHh-CCcccccccccccee-eecCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC-----hHH
Confidence 66665544333 1111111 111100 000111124444554322 116799999996653 333
Q ss_pred HHHHHHhCCCCCcEEEEEeeCC
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
+..+.. ..+.++||.|+.
T Consensus 340 L~~l~~----~~~rv~~sTTIh 357 (758)
T COG1444 340 LHKLLR----RFPRVLFSTTIH 357 (758)
T ss_pred HHHHHh----hcCceEEEeeec
Confidence 334433 445788999964
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.01 E-value=0.0068 Score=49.51 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
.++.+++.|++|+|||...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3689999999999999543
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.98 E-value=0.0031 Score=67.73 Aligned_cols=124 Identities=17% Similarity=0.037 Sum_probs=74.5
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.+++-|.+|+..++.+ +.-++++|..|+|||.+ +-++...+.. .+.+++.++||---|..+.+ .. ++.
T Consensus 346 ~Ls~eQr~Av~~il~s-~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~t-Gi~ 413 (988)
T PRK13889 346 VLSGEQADALAHVTDG-RDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GS-GIA 413 (988)
T ss_pred CCCHHHHHHHHHHhcC-CCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------cc-Ccc
Confidence 6899999999999974 34578999999999975 3344444433 35679999999765544332 10 111
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEE
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIML 283 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~ 283 (399)
. .|-.+|+.-. ......+...++||||||-++.. ..+..+++.. ...+++|+
T Consensus 414 a---------------------~TI~sll~~~-~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~garvVL 466 (988)
T PRK13889 414 S---------------------RTIASLEHGW-GQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAKVVL 466 (988)
T ss_pred h---------------------hhHHHHHhhh-cccccccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCEEEE
Confidence 0 1222222110 11122355678999999987632 2344555433 45677777
Q ss_pred EEee
Q psy11867 284 FSAT 287 (399)
Q Consensus 284 ~SAT 287 (399)
+.=+
T Consensus 467 VGD~ 470 (988)
T PRK13889 467 VGDP 470 (988)
T ss_pred ECCH
Confidence 6544
No 197
>KOG1132|consensus
Probab=96.92 E-value=0.0019 Score=66.55 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=52.3
Q ss_pred CCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHH---hhC-----------C--------C---------
Q psy11867 124 YAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLS---RVN-----------P--------S--------- 170 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~---~l~-----------~--------~--------- 170 (399)
++|++.|...+..++.. ...|.++.+|||+|||++-+-..|. ++. . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 47899999888877653 3688999999999999887654443 221 0 0
Q ss_pred --------CCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 171 --------IQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 171 --------~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
...|++.|-+-|..-..|+.+++++.+
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 013566777778877788888887754
No 198
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0011 Score=65.58 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=73.9
Q ss_pred EccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhcc
Q psy11867 148 QSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKI 220 (399)
Q Consensus 148 ~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 220 (399)
.+.||||||++..--||+....+.+ ..|+.|........+..-+..-...---++-....++...+- .-..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 4679999999988888888776433 477888766655544332211000000000011111111110 0123
Q ss_pred CCcEEEeCchhHHHhhhcccc--c---cCCcee-EEEEechhhHhhcC--CchH-------HHHHHH--HhCCCCCcEEE
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRF--F---DLSKIK-VFVLDEADVMIATQ--GHQD-------FSIRIQ--KRLPSDCQIML 283 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~--~---~~~~~~-~lViDEah~l~~~~--~~~~-------~~~~i~--~~l~~~~q~l~ 283 (399)
...|..+|.+.|...+.+.+. + ++.+.. +++-||||++-... ...+ +-..+. ..-.++.-++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 346999999998766543322 2 344444 45679999985311 0111 111111 22234556779
Q ss_pred EEeeCChh
Q psy11867 284 FSATYDKE 291 (399)
Q Consensus 284 ~SAT~~~~ 291 (399)
||||.+.+
T Consensus 161 f~at~~k~ 168 (812)
T COG3421 161 FSATIPKE 168 (812)
T ss_pred hhhcCCcc
Confidence 99999843
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0066 Score=58.30 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=80.5
Q ss_pred cccccCCCCHHHHHHHHHc---C--CCCChH---HHHHHhhh----hhc-----CCCCcEEEEccCCCCceehhHHHHHH
Q psy11867 103 KTFEALHLKPELLKGVYEM---G--FYAPSK---IQETALPT----LLA-----DPPHNMIAQSQSGTGKTAAFTLTMLS 165 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g--~~~p~~---iQ~~ai~~----ll~-----~~g~~vi~~a~TGsGKT~~~~l~il~ 165 (399)
..+...++++.+.+.|.+. + ...+.. +....+.. +-. ..|..+++.||||+|||.....-+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566778888888887542 1 112222 22222211 100 12789999999999999776543333
Q ss_pred hhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 166 RVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 166 ~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
..... ...++.+++ +...-.--.+.++.++..+ ++.+ ..+-+++.+...+. .+.
T Consensus 161 ~~~~~-G~~~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~------------------~~~~~~~~l~~~l~-----~l~ 214 (374)
T PRK14722 161 CVMRF-GASKVALLT-TDSYRIGGHEQLRIFGKIL-GVPV------------------HAVKDGGDLQLALA-----ELR 214 (374)
T ss_pred HHHhc-CCCeEEEEe-cccccccHHHHHHHHHHHc-CCce------------------EecCCcccHHHHHH-----Hhc
Confidence 22221 112343333 2221001123333333322 2222 22334444433322 234
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhH-HHHHHhh
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEV-MEFAQDM 299 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v-~~~~~~~ 299 (399)
+.++++||.+-+..-.....+.+..+.....+...++.+|||..... .+.++.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 66889999986642111122222222222222344778899986543 3444444
No 200
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0078 Score=57.82 Aligned_cols=131 Identities=13% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcH-HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTY-ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~-~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
++.+.+.||||+|||.....-+..... .+.++.++. |.| .-+.|+....+.+ ++.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~yae~l-----gipv------------- 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GFEV------------- 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHhhhc-----CCcE-------------
Confidence 578899999999999766544433322 233344444 333 2333333322221 1111
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC-hhHHHHHH
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD-KEVMEFAQ 297 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~-~~v~~~~~ 297 (399)
+++.+|..+.+.+.... ...++++++||-+=+..........+..++....+..-++.+|||.. .++.+.++
T Consensus 300 -----~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 -----IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred -----EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 22345666655432211 11257889999887753221122223344433334444567898865 45566666
Q ss_pred hhC
Q psy11867 298 DMV 300 (399)
Q Consensus 298 ~~~ 300 (399)
.|-
T Consensus 373 ~F~ 375 (436)
T PRK11889 373 NFK 375 (436)
T ss_pred Hhc
Confidence 653
No 201
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=96.86 E-value=0.0014 Score=48.02 Aligned_cols=38 Identities=26% Similarity=0.676 Sum_probs=35.1
Q ss_pred HHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 362 EKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 362 ~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|+..|+++..+||+++..+|..+++.|++|+.+||+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli 38 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLI 38 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEE
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEE
Confidence 35788899999999999999999999999999998885
No 202
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.83 E-value=0.012 Score=63.91 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
.++..+......+ ..+++-|.+|+..+... ++-++++|+.|+|||.+.- ++...+.. .+.+++.++||-.-|..+
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~-~r~~~v~G~AGTGKTt~l~-~~~~~~e~--~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGP-ARIAAVVGRAGAGKTTMMK-AAREAWEA--AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhcc-CCeEEEEeCCCCCHHHHHH-HHHHHHHH--cCCeEEEEcCcHHHHHHH
Confidence 3344444433333 46899999999988654 6788999999999996533 34444433 356789999997655444
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhH-HHhhhccccccCCceeEEEEechhhHhhcCCchHHH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKV-LDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFS 268 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 268 (399)
.+.. ++.. .|-.++ +.+ ......+..-++||||||-++.. ..+
T Consensus 442 ~e~~--------Gi~a---------------------~TIas~ll~~--~~~~~~l~~~~vlVIDEAsMv~~-----~~m 485 (1102)
T PRK13826 442 EKEA--------GIQS---------------------RTLSSWELRW--NQGRDQLDNKTVFVLDEAGMVAS-----RQM 485 (1102)
T ss_pred HHhh--------CCCe---------------------eeHHHHHhhh--ccCccCCCCCcEEEEECcccCCH-----HHH
Confidence 3211 1111 122222 111 11122355667999999987632 334
Q ss_pred HHHHHhCC-CCCcEEEEEee
Q psy11867 269 IRIQKRLP-SDCQIMLFSAT 287 (399)
Q Consensus 269 ~~i~~~l~-~~~q~l~~SAT 287 (399)
..+++..+ ..++++++.=+
T Consensus 486 ~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 486 ALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHhcCCEEEEECCH
Confidence 45555554 56777777544
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=96.82 E-value=0.0029 Score=57.17 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=29.1
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
.+++++|+|++|.+.........+..++..+......++++++.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 35678999999987533233444555555544444557777776543
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=96.80 E-value=0.0088 Score=56.79 Aligned_cols=132 Identities=21% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc---HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT---YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt---~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
+.-+++.|++|+|||....-.+. .+.. .+.+++++... ..-..|+......++ +.+.....+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~~--~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-----v~v~~~~~g~------ 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLKK--NGFSVVIAAGDTFRAGAIEQLEEHAERLG-----VKVIKHKYGA------ 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHH--cCCeEEEecCCcCcHHHHHHHHHHHHHcC-----CceecccCCC------
Confidence 46788999999999975433222 2222 23345555432 233455544444442 2221111111
Q ss_pred ccCCcEEEeCchhH-HHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 219 KITEQIIIGTPGKV-LDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l-~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
.|..+ .+.+. .....+.+++++|.+.++.........+..+.+...+...++.++||...+....++
T Consensus 206 ---------dp~~v~~~ai~---~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 206 ---------DPAAVAYDAIE---HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred ---------CHHHHHHHHHH---HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 11111 11111 111235679999999997432234445556666666777788999998877666565
Q ss_pred hh
Q psy11867 298 DM 299 (399)
Q Consensus 298 ~~ 299 (399)
.+
T Consensus 274 ~f 275 (336)
T PRK14974 274 EF 275 (336)
T ss_pred HH
Confidence 54
No 205
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.78 E-value=0.0029 Score=65.47 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
..+++.|..|+..++.. ...++++||+|||||....-.+.+.+.. +.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSS-KDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcC-CCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998874 4788999999999996654444444433 44799999999999998888876
No 206
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.77 E-value=0.0045 Score=63.08 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH-HHHHHHhccCCCc
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG-EVVAKMGKHITDL 203 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~-~~~~~~~~~~~~~ 203 (399)
..+|+|.+.+..+....-+.|+++.++-+|||.+.+..+...+.... .-+|++.||.++|.... ..+..+....+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 56899999999887654578999999999999966665555555433 34899999999998875 6777777666554
Q ss_pred EEEEEE-----cCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 204 SVRYAV-----RGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 204 ~~~~~~-----~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
.-.+.- ++.........+..+.++..+. -..+.-..++++++||+|.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S-------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS-------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecCCCEEEEEeCCC-------CcccccCCcCEEEEechhhccc
Confidence 422221 1111111111122344332221 1222334678999999999853
No 207
>PHA02533 17 large terminase protein; Provisional
Probab=96.77 E-value=0.014 Score=59.09 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=85.1
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.+.|+|...+..+.. ++-.++..+=..|||.+....++..... ..+..+++++|++.-|..+.+.++.+....+.+.
T Consensus 59 ~L~p~Q~~i~~~~~~--~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 59 QMRDYQKDMLKIMHK--NRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred CCcHHHHHHHHHHhc--CeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 578999999887754 4556788889999998776544433322 2356899999999999999988887766554321
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCC--CCcEE
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPS--DCQIM 282 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~--~~q~l 282 (399)
-..........-....+..|.+.|-+ .+...=.+.+++++||+|.+.+ +......+...+.. ..+++
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~---~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN---FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC---HHHHHHHHHHHHHcCCCceEE
Confidence 10000000000000223334333321 1111223567899999998632 22333333333322 24566
Q ss_pred EEEeeC
Q psy11867 283 LFSATY 288 (399)
Q Consensus 283 ~~SAT~ 288 (399)
++|.+.
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 666664
No 208
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.76 E-value=0.0039 Score=60.29 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=40.7
Q ss_pred ChHHHHHHhhhhh----cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHH
Q psy11867 126 PSKIQETALPTLL----ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 126 p~~iQ~~ai~~ll----~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 188 (399)
+++-|+.++..++ ...+.++++.|+-|+|||..+- .+...+.. .+..+++++||-.-|..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccceEEEecchHHHHHh
Confidence 5677888877772 2238999999999999996442 23333333 34568889998655443
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.73 E-value=0.0026 Score=51.49 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
+..+++.||+|+|||..... ++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 68899999999999976543 222222211 246777766543
No 210
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.71 E-value=0.003 Score=57.12 Aligned_cols=84 Identities=25% Similarity=0.289 Sum_probs=58.2
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEc-Cchhhhh----hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 171 IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVR-GENLERN----KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
...|.+|||+..---|..+.+.++.+... +..+.-.+. ...++.+ .....+|.||||+|+..++ ..+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLl-e~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLL-ENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHH-HcCCCCcc
Confidence 45788999999988888888888877311 112111111 1122222 2456789999999999996 66788999
Q ss_pred ceeEEEEechhh
Q psy11867 246 KIKVFVLDEADV 257 (399)
Q Consensus 246 ~~~~lViDEah~ 257 (399)
++.++|||--|+
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998653
No 211
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.67 E-value=0.021 Score=54.75 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
++.+.+.||||.|||..-.=-+............+||-+-|.-.+. .++++.+++-+ ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im-~vp~---------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA--VEQLKTYADIM-GVPL---------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH--HHHHHHHHHHh-CCce----------------
Confidence 7889999999999996543222222222234445677666655442 34455554433 3333
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCCh-hHHHHHHhhC
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK-EVMEFAQDMV 300 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~-~v~~~~~~~~ 300 (399)
.+|-+|.-|...+. .+++++++.+|=+-+-.-.......+..+.....+---.+.+|||... ++...+..|.
T Consensus 264 --~vv~~~~el~~ai~-----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 264 --EVVYSPKELAEAIE-----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred --EEecCHHHHHHHHH-----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 34445555554432 245667888887755211111122223333333334456788999764 4666666664
Q ss_pred C
Q psy11867 301 P 301 (399)
Q Consensus 301 ~ 301 (399)
.
T Consensus 337 ~ 337 (407)
T COG1419 337 L 337 (407)
T ss_pred c
Confidence 3
No 212
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.67 E-value=0.003 Score=46.18 Aligned_cols=41 Identities=37% Similarity=0.598 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 359 WLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 359 ~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++..|...++.+..+||+++..+|..+++.|++|...||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 42 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLV 42 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEE
Confidence 46778888899999999999999999999999999988874
No 213
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.66 E-value=0.0044 Score=64.83 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=55.2
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
.+++-|.+|+... ..+++|.|..|||||.+-..-+...+.. +....++|+|+.|+.-|..+.+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~----~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV----TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC----CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4788999998642 4788899999999998877766666653 3344579999999999999999888764
No 214
>KOG1805|consensus
Probab=96.54 E-value=0.0056 Score=63.86 Aligned_cols=137 Identities=20% Similarity=0.128 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.|.+.+- -+..++.-|++|+-..++. ....+|.|=+|||||......+-..+. .+.++|..+=|..-+..+
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~a-edy~LI~GMPGTGKTTtI~~LIkiL~~---~gkkVLLtsyThsAVDNI 729 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALAA-EDYALILGMPGTGKTTTISLLIKILVA---LGKKVLLTSYTHSAVDNI 729 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHhc-cchheeecCCCCCchhhHHHHHHHHHH---cCCeEEEEehhhHHHHHH
Confidence 44554443 2346788999999988875 567788899999999765433322222 344588888888777777
Q ss_pred HHHHHHHhccCCCcEEE----------EEEcCchh---hh--hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEec
Q psy11867 190 GEVVAKMGKHITDLSVR----------YAVRGENL---ER--NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~----------~~~~~~~~---~~--~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDE 254 (399)
.-.++.++..+-.+... +...+.+. .. .......||.+|.=-+.+ ..|..+.++++|+||
T Consensus 730 LiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 730 LIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDE 804 (1100)
T ss_pred HHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEcc
Confidence 77676654332111000 00111111 11 113445688888644433 344556789999999
Q ss_pred hhhHh
Q psy11867 255 ADVMI 259 (399)
Q Consensus 255 ah~l~ 259 (399)
|-.+.
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98653
No 215
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.53 E-value=0.0046 Score=55.27 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=57.0
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCc
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQ 223 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (399)
-+++.|++|+|||-. +-++...+.....+.+++++... +....+...++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 589999999999963 33444444332334456666543 333333332221
Q ss_pred EEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChh
Q psy11867 224 IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKE 291 (399)
Q Consensus 224 IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~ 291 (399)
.....+.+. +...++++||++|.+...+.....+..++..+. .+.++|+.|...|..
T Consensus 86 ---~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ---GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ---TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ---ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011122221 347889999999998643333444444444432 355666666565544
No 216
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.021 Score=56.26 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=63.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhh-CCCCCCCeEEEEe--CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRV-NPSIQEPQVLCLA--PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l-~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
++.+++.+|||+|||....--+.... .. .+.++.++. |.+.-+. +.++.++... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~---eqL~~~a~~~-~vp~------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAV---EQLKTYAKIM-GIPV------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHH---HHHHHHHHHh-CCce-------------
Confidence 57889999999999976543222222 12 223444444 3332222 2232222211 2211
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCCh-hHHHHH
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDK-EVMEFA 296 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~-~v~~~~ 296 (399)
..+.++..+...+.. +.+.++|+||.+-+..........+..++... .+....+++|||... .+.+.+
T Consensus 282 -----~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 282 -----EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -----EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 122344444444322 33678999998865422111222333444421 223447789999874 455555
Q ss_pred Hhh
Q psy11867 297 QDM 299 (399)
Q Consensus 297 ~~~ 299 (399)
..+
T Consensus 352 ~~f 354 (424)
T PRK05703 352 KHF 354 (424)
T ss_pred HHh
Confidence 554
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.51 E-value=0.0054 Score=55.44 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 478999999999999543
No 218
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.012 Score=53.13 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
..+++.|++|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55999999999999543
No 219
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.46 E-value=0.0076 Score=63.68 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..+++-|.+|+..- ..+++|.|..|||||.+-..-+...+.. .....++|+|+.|+.-|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~----~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP----PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC----CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35889999998642 4789999999999998876666666643 3345679999999999999999998875
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.45 E-value=0.01 Score=51.99 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=30.6
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
++.++++||-+-+..........+..+...+.+..-.+.+|||........+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 45678888887654321122334445555655566678899998765443333
No 221
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.43 E-value=0.0072 Score=60.23 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
..+++.||+|+|||.... ++...+.....+.+++++ +..++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEE-EHHHHHHHH
Confidence 569999999999996543 333444332234456655 444554443
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.43 E-value=0.00087 Score=57.27 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=52.7
Q ss_pred EEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEE
Q psy11867 146 IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQII 225 (399)
Q Consensus 146 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 225 (399)
++.|+-|-|||.+..+.+...+... ..+++|-+|+.+-++.+.+.+..-...+ +.+...................|-
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 77 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQRIE 77 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC---------------------------CCC--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccceEE
Confidence 5789999999987766555544443 2569999999988877776555433222 111100000000000001123455
Q ss_pred EeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 226 IGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 226 V~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
...|+.+... ....+++|||||=.+.- ..+..++ .....++||.|..
T Consensus 78 f~~Pd~l~~~--------~~~~DlliVDEAAaIp~-----p~L~~ll----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 78 FVAPDELLAE--------KPQADLLIVDEAAAIPL-----PLLKQLL----RRFPRVVFSTTIH 124 (177)
T ss_dssp B--HHHHCCT------------SCEEECTGGGS-H-----HHHHHHH----CCSSEEEEEEEBS
T ss_pred EECCHHHHhC--------cCCCCEEEEechhcCCH-----HHHHHHH----hhCCEEEEEeecc
Confidence 5566554332 12357999999976532 2333333 3444678888864
No 223
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.43 E-value=0.0062 Score=57.51 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 115 LKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 115 ~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
+..+...|+ +++.|...+..+... +.+++++|+|||||| .++-+++..+.......+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRA-HRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHc-CCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 445555665 456788888777665 799999999999999 4445555544222234567777788776
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.40 E-value=0.013 Score=52.37 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.|++|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6899999999999996554
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.38 E-value=0.013 Score=58.26 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=30.3
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVV 193 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 193 (399)
..+++.|++|+|||... .++...+.....+.+++++.. .++..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45899999999999443 344454443334556766655 45655554443
No 226
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.36 E-value=0.0074 Score=60.60 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=81.5
Q ss_pred HHHHHHhhhhhc---CC----CCcEEEEccCCCCceehhHHHHHHhh-CCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 128 KIQETALPTLLA---DP----PHNMIAQSQSGTGKTAAFTLTMLSRV-NPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 128 ~iQ~~ai~~ll~---~~----g~~vi~~a~TGsGKT~~~~l~il~~l-~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
|+|.-.+-.++- +. -+.+++.-+=|.|||.....-++..+ .....+..+++.+++++-|..+++.++++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 456666555541 11 25678888999999976544444333 34446778999999999999999999998876
Q ss_pred CCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhh-hccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC--C
Q psy11867 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWG-LKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL--P 276 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~-~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l--~ 276 (399)
.+.+........ ... ....|.....+.+...+ ...+..+=.+..++|+||+|.+-+ .+.+..+..-+ .
T Consensus 81 ~~~l~~~~~~~~--~~~---~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~----~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 81 SPELRKRKKPKI--IKS---NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD----DELYDALESGMGAR 151 (477)
T ss_pred Chhhccchhhhh--hhh---hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC----HHHHHHHHhhhccC
Confidence 544432111100 000 00112221111111110 111222333678999999999743 12333333333 2
Q ss_pred CCCcEEEEEe
Q psy11867 277 SDCQIMLFSA 286 (399)
Q Consensus 277 ~~~q~l~~SA 286 (399)
++.+++.+|.
T Consensus 152 ~~pl~~~IST 161 (477)
T PF03354_consen 152 PNPLIIIIST 161 (477)
T ss_pred CCceEEEEeC
Confidence 4556665543
No 227
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.35 E-value=0.0091 Score=58.66 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=24.1
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+++.|++|+|||.... ++...+.....+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEH
Confidence 468999999999996543 34444433323445666643
No 228
>PRK06893 DNA replication initiation factor; Validated
Probab=96.34 E-value=0.0089 Score=53.82 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=28.8
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChhH
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKEV 292 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~v 292 (399)
.+.+++|+||+|.+.....+...+..++.... ...+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 46779999999998532222333334443333 3456778888876543
No 229
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.33 E-value=0.032 Score=56.78 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC-CCcEEEEEEcCchhhhhhcc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI-TDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 220 (399)
.+-.++..|--.|||.... +++..+.....+.++++.+|.+.-++.+++.++...... +...+... .|..+.-....
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v-kGe~I~i~f~n 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV-KGETISFSFPD 331 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee-cCcEEEEEecC
Confidence 4778888999999998655 666655444457789999999999999999998876532 11112121 22211000011
Q ss_pred C--CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 221 T--EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 221 ~--~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
+ ..|..++- .+...+.=..++++|+|||+.+-.. .+...+ -.+ ...+++++++|.|
T Consensus 332 G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l--~~~n~k~I~ISS~ 389 (738)
T PHA03368 332 GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFL--NQTNCKIIFVSST 389 (738)
T ss_pred CCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHH--hccCccEEEEecC
Confidence 1 13433321 1222333457899999999998542 222222 221 2248899999988
No 230
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.33 E-value=0.0081 Score=63.48 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=56.1
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..+++-|.+|+... ..+++|.|..|||||.+-.--+...+.. +....++|+|+-|+..|..+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~----~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP----LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC----CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998642 4789999999999998876666666643 33456799999999999999999988753
No 231
>KOG1015|consensus
Probab=96.31 E-value=0.033 Score=58.19 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHhhhhhcCCCCcEEEEccCCCCceeh---hHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC---CcEE
Q psy11867 132 TALPTLLADPPHNMIAQSQSGTGKTAA---FTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT---DLSV 205 (399)
Q Consensus 132 ~ai~~ll~~~g~~vi~~a~TGsGKT~~---~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~---~~~~ 205 (399)
+.+......+|...|+.--.|-|||+. |+..+|.... ..-.++|||||...+ ..+...|.++...+. .+.+
T Consensus 686 eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k--lg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV 762 (1567)
T KOG1015|consen 686 ESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK--LGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEV 762 (1567)
T ss_pred HHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc--cCCceEEEEcchHHH-HHHHHHHHHhccccccccccee
Confidence 333333334678888888899999975 4444443333 244679999998654 445666666654321 1222
Q ss_pred EEEEcCchhhh------hhccCCcEEEeCchhHHHhhhcccc--------c----cCCceeEEEEechhhHhhcCCchHH
Q psy11867 206 RYAVRGENLER------NKKITEQIIIGTPGKVLDWGLKYRF--------F----DLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 206 ~~~~~~~~~~~------~~~~~~~IlV~Tp~~l~~~~~~~~~--------~----~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
.-...-...+. .......|.|.-+..+-.+...... | --...++||+||+|.+-. -...
T Consensus 763 ~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKN---eksa 839 (1567)
T KOG1015|consen 763 SELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKN---EKSA 839 (1567)
T ss_pred ehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhcc---chHH
Confidence 22111111111 1122234655555555444322110 0 112358999999999843 2233
Q ss_pred HHHHHHhCCCCCcEEEEEee
Q psy11867 268 SIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT 287 (399)
+...+..+...+ .|++|.|
T Consensus 840 ~Skam~~irtkR-RI~LTGT 858 (1567)
T KOG1015|consen 840 VSKAMNSIRTKR-RIILTGT 858 (1567)
T ss_pred HHHHHHHHHhhe-eEEeecC
Confidence 333333333334 4566666
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.028 Score=53.29 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
+.++++.|+||+|||.... ++...+.. .+..+++ .+..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~--~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD--RGKSVIY-RTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH--CCCeEEE-EEHHHHHHHHH
Confidence 6899999999999996544 33333322 2334544 44455654443
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.021 Score=51.70 Aligned_cols=104 Identities=16% Similarity=0.244 Sum_probs=54.2
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
..+++.+++|+|||.... ++...+.. .+..++++ +..+|...+...+. . ..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~--~g~~v~~i-t~~~l~~~l~~~~~----~----------~~----------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL--RGKSVLII-TVADIMSAMKDTFS----N----------SE----------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh--cCCeEEEE-EHHHHHHHHHHHHh----h----------cc-----------
Confidence 579999999999996554 33333333 23345555 44444433332211 0 00
Q ss_pred cEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh-CCCCCcEEEEEee
Q psy11867 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR-LPSDCQIMLFSAT 287 (399)
Q Consensus 223 ~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~-l~~~~q~l~~SAT 287 (399)
.+...+++. +.++++|||||++......+....+..|+.. ......+++.|--
T Consensus 151 ----~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 151 ----TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ----ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 022233332 4578899999999865332222333344432 3335566665554
No 234
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.27 E-value=0.0099 Score=56.08 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred HHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 116 KGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 116 ~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
..+...|. .++.|...+..+... +.+++++|+||||||.. +-+++..+.......+++.+=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~-~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDS-RLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCcccc
Confidence 34455555 457788888877776 78999999999999964 345555553322345677777777763
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.23 E-value=0.074 Score=44.33 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.8
Q ss_pred EEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
+++.|++|+|||.....-+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcch
Confidence 678999999999765433332222 34557777655443
No 236
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.19 E-value=0.014 Score=61.34 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=54.3
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+++-|.+++.. . ..+++|.|..|||||.+-+--+...+.. .....++|+|+.|+.-|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--V--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--C--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998864 2 4789999999999998877777766643 3345679999999999999998887654
No 237
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.18 E-value=0.027 Score=51.00 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
+|..+++.|++|+|||...+-.+...+.. +..++|++ +.+-..|+.+.++.++-
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 37899999999999998665555555433 44588888 55677778887777654
No 238
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.11 E-value=0.044 Score=51.00 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 5799999999999997663
No 239
>CHL00181 cbbX CbbX; Provisional
Probab=96.10 E-value=0.042 Score=51.19 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
|.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 67899999999999977654
No 240
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.07 E-value=0.036 Score=57.88 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-CCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-IQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..+++-|.+|+-. . ..+++|.|..|||||.+.+--+...+... ....++|+|+.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--G--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--C--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999999853 2 36789999999999987766555555432 234579999999999999998887654
No 241
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.07 E-value=0.025 Score=58.91 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCChHHHHHHhhhhhcC--CC-CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 124 YAPSKIQETALPTLLAD--PP-HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~--~g-~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..|++.|..++..+.+. .+ ++.++.+.+|||||+... .++... +..+|||+|+...|.|+++.++.+..
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 37999999999998654 12 356799999999997643 233322 23499999999999999999988853
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.06 E-value=0.029 Score=63.08 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=46.9
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh--HHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF--TLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~--~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
.+++-|.+|+..++..+.+-++++|..|+|||.+. ++.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 68999999999999755689999999999999763 2233332222 2346688899997666554
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.05 E-value=0.028 Score=50.39 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=25.2
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCc-EEEEEeeCCh
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ-IMLFSATYDK 290 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q-~l~~SAT~~~ 290 (399)
..+++||||+|.+.. .....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~--~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDD--AQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCc--hHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 456899999998742 233334444444333333 5777777553
No 244
>KOG1001|consensus
Probab=95.96 E-value=0.041 Score=56.95 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCC------CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSI------QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE 215 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (399)
-+-.|+.-..|-|||..-+.-++.+-.... .....||+||+ ++..|+..++.+.... ..+.+.+..| ....
T Consensus 152 ~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g-r~kd 228 (674)
T KOG1001|consen 152 LRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG-RTKD 228 (674)
T ss_pred cccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc-cccc
Confidence 355677788999999876654444322222 34457999998 4556777777544433 3566666665 2222
Q ss_pred hhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 216 RNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
.......+||++|++.+... ..+. -..-.+|+||||.+.
T Consensus 229 ~~el~~~dVVltTy~il~~~----~l~~-i~w~Riildea~~ik 267 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKNS----PLVK-IKWLRIVLDEAHTIK 267 (674)
T ss_pred cchhcCCceEEeeHHHhhcc----cccc-eeEEEEEeccccccC
Confidence 33345567999999987631 1111 123469999999974
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=95.95 E-value=0.1 Score=49.52 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=24.6
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++|+||+|.|... ....+.+++...+..+.+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~--aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG--AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH--HHHHHHHHHhcccCCceEEEEe
Confidence 35789999999998542 3344445555555556555543
No 246
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.048 Score=55.67 Aligned_cols=96 Identities=25% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.-+++.||+|.||| +|+..+++.+. .--+....||...+...++.
T Consensus 350 GpILcLVGPPGVGKT---------------------------SLgkSIA~al~-------RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 350 GPILCLVGPPGVGKT---------------------------SLGKSIAKALG-------RKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred CcEEEEECCCCCCch---------------------------hHHHHHHHHhC-------CCEEEEecCccccHHHhccc
Confidence 677888999999999 34444444332 22346677887777666665
Q ss_pred CcEEE-eCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC
Q psy11867 222 EQIII-GTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276 (399)
Q Consensus 222 ~~IlV-~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~ 276 (399)
-.-.| +-||++.+-+.+-+..+. ++++||.|.|... ...+-...++.-|.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss-~rGDPaSALLEVLD 446 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSS-FRGDPASALLEVLD 446 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC----eEEeechhhccCC-CCCChHHHHHhhcC
Confidence 54444 479999998766554333 7999999999764 45555666666664
No 247
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.94 E-value=0.022 Score=53.40 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=45.4
Q ss_pred HHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 115 LKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 115 ~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
+..+.+.|. +++-|...+..++.. +.+++++|+||||||... -.++..+.......+++++=.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLA-RKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 444555554 445666777666665 789999999999999643 44555554322345688887887764
No 248
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.94 E-value=0.018 Score=64.34 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=82.0
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEE
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSV 205 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 205 (399)
.|+-|.+||.. . ++++++.|..|||||.+-+--++..+..+....++|+|+=|+.-|..+.+.+.+-.... +.-
T Consensus 2 ~t~~Q~~ai~~--~--~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--~~~ 75 (1232)
T TIGR02785 2 WTDEQWQAIYT--R--GQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--LQQ 75 (1232)
T ss_pred CCHHHHHHHhC--C--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH--Hhc
Confidence 58899999973 2 79999999999999988777777766554334569999999999999888777654321 000
Q ss_pred EEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCC-ceeEEEEechhh
Q psy11867 206 RYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLS-KIKVFVLDEADV 257 (399)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~-~~~~lViDEah~ 257 (399)
......+.++...-...-|+|-..+...+.+.....+. +-.|=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00112233333444567899988887665543222211 124556898875
No 249
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.93 E-value=0.033 Score=55.63 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCCHHH-HHHHHHcCCCCCh----HHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhC---CCCCCCeEEEEe
Q psy11867 109 HLKPEL-LKGVYEMGFYAPS----KIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN---PSIQEPQVLCLA 180 (399)
Q Consensus 109 ~l~~~l-~~~l~~~g~~~p~----~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~---~~~~~~~~lil~ 180 (399)
+..+++ ..+|.+.--.++. -||.+==..|....+.-++++|..|||||.+++--+...+. .......+||+.
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEc
Confidence 344444 4445544333332 24444444444445788999999999999988765544442 222334499999
Q ss_pred CcHHHHHHHHHHHHHHhcc
Q psy11867 181 PTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~ 199 (399)
|++-++.-+.+++-.+|..
T Consensus 268 PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 268 PNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CcHHHHHHHHHhchhhccC
Confidence 9999999888888888754
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.92 E-value=0.034 Score=51.06 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=33.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS 170 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~ 170 (399)
+.+|+++++++-+.+ +.. .+..=+++.+|||||||.. +.+|+..+++.
T Consensus 105 i~~~e~LglP~i~~~-~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 105 IPTLEELGLPPIVRE-LAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCCHHHcCCCHHHHH-HHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 567788887776655 321 2246789999999999865 34677777664
No 251
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.059 Score=57.36 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=27.9
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
.+.+++||||+|+|.. .....+.++++..+..+.+|+.+ |-.
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 4678999999999964 23334555666666666666654 433
No 252
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.86 E-value=0.016 Score=61.41 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..+++-|.+|+... ..+++|.|..|||||.+..--+...+.. .....++|+++-|+.-|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~----~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT----EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC----CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35889999999742 4789999999999998877666666643 2334579999999999999998888764
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.014 Score=53.29 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
+.++++.|++|+|||..+..-....+ . . +..++++++.+|+.++...+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~-g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K--A-GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H--c-CCeEEEEEHHHHHHHHHHHHh
Confidence 78999999999999976543333333 2 2 335667778888877665443
No 254
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.84 E-value=0.067 Score=49.25 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe-CcH--HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA-PTY--ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN 217 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~-Pt~--~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (399)
++..+.+.+++|+|||..+..-+..... .+.++.++. .+. ..+.|+......+ ++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~~~~----------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GFEVI----------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhc-----CceEE-----------
Confidence 3689999999999999876644333222 223344443 222 3444444333222 11111
Q ss_pred hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC-hhHHHHH
Q psy11867 218 KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD-KEVMEFA 296 (399)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~-~~v~~~~ 296 (399)
...+|..+.+.+... -...++++++||-+=+..........+..+.....+..-.+.+|||.. .+..+.+
T Consensus 135 -------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 135 -------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred -------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 112444444432211 112367899999986652111112222233333333444667999865 4677777
Q ss_pred HhhC
Q psy11867 297 QDMV 300 (399)
Q Consensus 297 ~~~~ 300 (399)
+.|-
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 7653
No 255
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.044 Score=52.03 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=27.9
Q ss_pred ChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHH
Q psy11867 126 PSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l 161 (399)
.+|||...+..+++. -++-.++.||.|.|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 478888888888765 134688999999999976554
No 256
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.80 E-value=0.064 Score=49.27 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
..++++.||+|+|||..+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 57899999999999976543
No 257
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.74 E-value=0.073 Score=60.65 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=46.7
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhC--CCCCCCeEEEEeCcHHHHHHH
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN--PSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~--~~~~~~~~lil~Pt~~La~Q~ 189 (399)
..+++.|.+|+..++..+.+-+++++..|+|||...- .++..+. ....+..++.++||-.-|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 3689999999999998656789999999999996532 2333322 112345688899997666544
No 258
>KOG0991|consensus
Probab=95.73 E-value=0.02 Score=50.56 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeC
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~ 288 (399)
..+.+.+|+||||.|-+ |....+.+.+....+.+++.+-..+.
T Consensus 111 ~grhKIiILDEADSMT~--gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA--GAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred CCceeEEEeeccchhhh--HHHHHHHHHHHHHcccchhhhhhcch
Confidence 35678999999999964 67777777777777777777655553
No 259
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.70 E-value=0.052 Score=53.85 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=24.5
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+++.||+|+|||.... ++...+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 469999999999996543 34444433323446776654
No 260
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.68 E-value=0.055 Score=52.96 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=72.1
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH-HHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc-
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE-LAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI- 220 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (399)
+-.++.|..|||||.+..+-++..+.....+.+++|+-|+.. |..-++..++.....+ ++..........+.-....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 346788999999999888777776655434577899999887 5555666666554433 2221111111110000111
Q ss_pred CCcEEEeCc-hhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC--CCCcEEEEEeeCC
Q psy11867 221 TEQIIIGTP-GKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP--SDCQIMLFSATYD 289 (399)
Q Consensus 221 ~~~IlV~Tp-~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~--~~~q~l~~SAT~~ 289 (399)
+..|++..- +.-.. ......+.++.+|||..+... ....+...++ .....+++|.+.+
T Consensus 81 g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~-----~~~~l~~rlr~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFE-----DIKELIPRLRETGGKKFIIFSSNPE 141 (396)
T ss_pred CeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHH-----HHHHHHHHhhccCCccEEEEEcCcC
Confidence 223444332 21111 112334689999999987431 2222333333 2222467777744
No 261
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.053 Score=56.70 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=62.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe-CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA-PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~-Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
|+-+.+.||||+|||.....-+....... .+.++.++. -|.-.+ ..+.++.++... ++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~Rig--A~eQL~~~a~~~-gvpv--------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIG--ALEQLRIYGRIL-GVPV--------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchH--HHHHHHHHHHhC-CCCc---------------
Confidence 45678999999999876654332221111 112343333 232211 123344433322 2211
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh-HHHHHHhh
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE-VMEFAQDM 299 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~-v~~~~~~~ 299 (399)
.++.+|..+.+.+.. +.+.++|+||=+=+..........+..+.....+...++.+|||.... +.+.++.|
T Consensus 246 ---~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 ---HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ---cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 223355555544332 335567888877664321112222223333333445577888887543 44455554
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.05 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCCceehhHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTML 164 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il 164 (399)
++.+++.+|+|+|||....--+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 77889999999999976544333
No 263
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.55 E-value=0.23 Score=50.96 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=51.0
Q ss_pred CChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 125 APSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
-|+|.=.+-|..++.. ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.++....
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3455555555555432 14667788999999998876655544432 346799999999999998888877765
No 264
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.55 E-value=0.048 Score=47.03 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
+++.|++|+|||...+--+...+. .+..++|++. .+-..++.+.++.++-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~-e~~~~~~~~~~~~~g~ 51 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTL-EESPEELIENAESLGW 51 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEEC-CCCHHHHHHHHHHcCC
Confidence 688999999999766544444443 3445777764 4566777777776643
No 265
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.48 E-value=0.054 Score=53.71 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=25.0
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 187 (399)
..+++.||+|+|||.... ++...+.. .+.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~--~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE--SGGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH--cCCCEEEeeH-HHHHH
Confidence 568999999999996543 33443332 2345666653 34443
No 266
>PRK08116 hypothetical protein; Validated
Probab=95.48 E-value=0.039 Score=50.86 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIG 190 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~ 190 (399)
+..+++.|++|+|||..+. ++...+... +..+++ .+..++...+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~-~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIF-VNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEE-EEHHHHHHHHH
Confidence 3459999999999997654 344444432 233444 44455554443
No 267
>PRK12377 putative replication protein; Provisional
Probab=95.48 E-value=0.064 Score=48.74 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 191 (399)
..++++.|++|+|||.... ++...+.. .+..+ +.++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~--~g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLA--KGRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH--cCCCe-EEEEHHHHHHHHHH
Confidence 4789999999999996543 33333332 22234 44455566665544
No 268
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.45 E-value=0.19 Score=50.71 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=80.7
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh-ccCCCcEEEEEEcCchhhhhhccC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG-KHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
+-.+.--|--.|||+ |+.|++..+...-.+.++.|+++-+.-++-+.+++..-. .+++.-.+... .+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~-----------k~ 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN-----------KD 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-----------cC
Confidence 666777899999996 678899888887788999999999988877666665432 22222111111 11
Q ss_pred CcEEEeCchhH----HHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEee
Q psy11867 222 EQIIIGTPGKV----LDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSAT 287 (399)
Q Consensus 222 ~~IlV~Tp~~l----~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT 287 (399)
..|.+.-||.= .-...+...+.=++++++++||||.+-. +.+..|+-.+ ..++++|..|.|
T Consensus 271 ~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~-----~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK-----DAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH-----HHHHHhhhhhcccCceEEEEeCC
Confidence 12444444321 0111233445567889999999998732 2333444444 357888888887
No 269
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.42 E-value=0.071 Score=62.06 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=47.0
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH---HHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT---LTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~---l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
..+++.|..|+..++.++++-+++++..|+|||.... -++...+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 3689999999999987656778899999999996541 233333332 356788899997666544
No 270
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.41 E-value=0.11 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCCceehhHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~i 163 (399)
+..+++++++|+|||....--+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 6788999999999997665433
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.41 E-value=0.12 Score=43.70 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=27.0
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
...+++||||||.|.. .....+.+.+..-+.++.++++|..
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECC
Confidence 5689999999999864 2444455566665666666666554
No 272
>PRK04328 hypothetical protein; Provisional
Probab=95.38 E-value=0.082 Score=48.19 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
|..+++.+++|+|||...+--+...+.. +..++|++ +.+-..++.+.++.++-
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 7899999999999997655445554443 33477777 55566677777777654
No 273
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.35 E-value=0.021 Score=51.17 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=68.5
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc----EEEEEEcCchhhh
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL----SVRYAVRGENLER 216 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 216 (399)
.|..+++.|++|+|||.-.+--+...+... +..+++++- .+-..++.+.++.++-.+... .............
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 378999999999999976554444444430 234888873 455567777777664322110 0111111110000
Q ss_pred hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC---CchHHHHHHHHhCCCCCcEEEEEeeC
Q psy11867 217 NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ---GHQDFSIRIQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~---~~~~~~~~i~~~l~~~~q~l~~SAT~ 288 (399)
.. -..++.+...+.. .+.-.+.+.+|||-...+.... .....+..+...+.....+.++++..
T Consensus 95 ~~-------~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 95 WS-------PNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp -T-------SCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cc-------ccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 00 1122233332211 1111233799999999883221 23344455555555566677777774
No 274
>KOG0298|consensus
Probab=95.35 E-value=0.047 Score=58.80 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=84.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCC-----------C----CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEE
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNP-----------S----IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVR 206 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~-----------~----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 206 (399)
|.+++..-..|.|||.+-+...+..... . ...+..|||+|. ++..|+.+++.+-... .+++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 7888998999999998877655544211 0 112458999998 5567777777665433 24555
Q ss_pred EEEcCchh---hhhhccCCcEEEeCchhHHHhhhccccc-cCC----------------cee--EEEEechhhHhhcCCc
Q psy11867 207 YAVRGENL---ERNKKITEQIIIGTPGKVLDWGLKYRFF-DLS----------------KIK--VFVLDEADVMIATQGH 264 (399)
Q Consensus 207 ~~~~~~~~---~~~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~----------------~~~--~lViDEah~l~~~~~~ 264 (399)
...|-... .......++||++|...|..-+...+.. ..+ .+. -+++|||+++.. -
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves---s 527 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES---S 527 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc---h
Confidence 55544322 2233456799999999886543322111 011 111 289999999854 3
Q ss_pred hHHHHHHHHhCCCCCcEEEEEee
Q psy11867 265 QDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 265 ~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
.....++...++ ....=++|.|
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGT 549 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGT 549 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCC
Confidence 344445555554 4445678888
No 275
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.19 Score=50.35 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=34.4
Q ss_pred cccccCCCCHHHHHHHHHc-CC-CCChHHHHHHhhhh-----------hcCCCCcEEEEccCCCCceehhHH
Q psy11867 103 KTFEALHLKPELLKGVYEM-GF-YAPSKIQETALPTL-----------LADPPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~-g~-~~p~~iQ~~ai~~l-----------l~~~g~~vi~~a~TGsGKT~~~~l 161 (399)
..+...|+++.+.+.|... .- .....-.......+ +. .|+.+.+.||+|+|||.....
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~-~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLE-RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCcccccc-CCCEEEEECCCCCCHHHHHHH
Confidence 5567778888888888652 11 11111111111111 22 278899999999999976543
No 276
>PF13173 AAA_14: AAA domain
Probab=95.29 E-value=0.15 Score=41.18 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.4
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
.-.+++|||+|.+. .+...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999983 4666666666644 45666655443
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.27 E-value=0.11 Score=41.76 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.9
Q ss_pred eeEEEEechhhHhhc
Q psy11867 247 IKVFVLDEADVMIAT 261 (399)
Q Consensus 247 ~~~lViDEah~l~~~ 261 (399)
-.+++|||+|.+...
T Consensus 59 ~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPK 73 (132)
T ss_dssp SEEEEEETGGGTSHH
T ss_pred ceeeeeccchhcccc
Confidence 579999999999765
No 278
>KOG2004|consensus
Probab=95.25 E-value=0.12 Score=52.85 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=70.0
Q ss_pred CChHHHHHHhhhhh----cC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 125 APSKIQETALPTLL----AD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll----~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
-+..+-.+.+..+. ++ .|+-+++.+|+|-|||-. +..+++.+ +.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI---------------------------~kSIA~AL---nR 464 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI---------------------------AKSIARAL---NR 464 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH---------------------------HHHHHHHh---CC
Confidence 34455555555542 22 478899999999999943 22233322 21
Q ss_pred cCCCcEEEEEEcCchhhhhhccCCcEE-EeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC
Q psy11867 199 HITDLSVRYAVRGENLERNKKITEQII-IGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Il-V~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~ 276 (399)
--..+.+||.......++...-. =+-||++.+.+.+-+.-+. ++.|||+|.+.. +...+-...++..|.
T Consensus 465 ----kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP----liLiDEvDKlG~-g~qGDPasALLElLD 534 (906)
T KOG2004|consen 465 ----KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP----LILIDEVDKLGS-GHQGDPASALLELLD 534 (906)
T ss_pred ----ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc----eEEeehhhhhCC-CCCCChHHHHHHhcC
Confidence 12355677776666666655444 4579999998755433222 799999999973 345555666766664
No 279
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.046 Score=55.69 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=55.8
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
..+++.|++|+|||.... ++.+.+.....+.+++|+. ..+++.++...+.. .
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~---~----------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRD---G----------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHh---c-----------------------
Confidence 348999999999995432 3344433322344455554 34555443332211 0
Q ss_pred cEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChh
Q psy11867 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKE 291 (399)
Q Consensus 223 ~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~ 291 (399)
..+.+.. .+.++++|||||+|.+.........+..++..+. .+.++|+.|-..+..
T Consensus 367 -----~~~~f~~--------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 367 -----KGDSFRR--------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -----cHHHHHH--------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 0011111 1346789999999998543333333444444443 356666544443333
No 280
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.12 E-value=0.17 Score=53.40 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=22.9
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEe
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSA 286 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SA 286 (399)
..+.+|||||+|.|... ..+.+..+++... ...+++++..
T Consensus 868 r~v~IIILDEID~L~kK--~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK--TQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred ccceEEEeehHhhhCcc--HHHHHHHHHHHhhccCCeEEEEEe
Confidence 45678999999999642 3344444544322 2344444333
No 281
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.16 Score=49.67 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
|.-+.+.||||+|||.....-+-..+.........++.+.+.-
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 6778999999999997664322222222112223556666543
No 282
>KOG0739|consensus
Probab=95.11 E-value=2.1 Score=39.62 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=77.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 105 FEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 105 f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
|++.-=-+.-.++|++.=+- | -=+|.+..+ +-+.+++-+|+|+||+ |+.-++.. .. . -..+=+.
T Consensus 132 WsDVAGLE~AKeALKEAVIL---P---IKFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVAT-EA--n--STFFSvS 198 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVIL---P---IKFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVAT-EA--N--STFFSVS 198 (439)
T ss_pred hhhhccchhHHHHHHhheee---c---ccchhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHh-hc--C--CceEEee
Confidence 55442224555666553111 1 113566654 3568999999999999 33322211 11 1 2445555
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~ 261 (399)
+..|+..+..+-+++.+. |..+.. -+.-..+.|||+|.+...
T Consensus 199 SSDLvSKWmGESEkLVkn--------------------------------LFemAR------e~kPSIIFiDEiDslcg~ 240 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKN--------------------------------LFEMAR------ENKPSIIFIDEIDSLCGS 240 (439)
T ss_pred hHHHHHHHhccHHHHHHH--------------------------------HHHHHH------hcCCcEEEeehhhhhccC
Confidence 556665443333333211 222222 234568999999988754
Q ss_pred CCc--hHHHHHHHHh----C----CCCCcEEEEEeeCChhH-HHHHHhhCCCCeEEecc
Q psy11867 262 QGH--QDFSIRIQKR----L----PSDCQIMLFSATYDKEV-MEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 262 ~~~--~~~~~~i~~~----l----~~~~q~l~~SAT~~~~v-~~~~~~~~~~p~~i~~~ 309 (399)
.+. .+...+|... + ..+--++.+.||--+++ ...+++-+...+.|.+.
T Consensus 241 r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 241 RSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred CCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCC
Confidence 322 2222333221 1 23456888999965554 34444444444444443
No 283
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.01 E-value=0.054 Score=50.79 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=53.5
Q ss_pred CCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeE
Q psy11867 97 SPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQV 176 (399)
Q Consensus 97 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~ 176 (399)
.|..++..|..-.+. +..|- .|...++-|...+..+... ..|+++++.||||||.. +-+++..+.. .-|+
T Consensus 134 Gp~lsIRKf~k~~lt---l~dli--~~gt~~~~~a~~L~~av~~-r~NILisGGTGSGKTTl-LNal~~~i~~---~eRv 203 (355)
T COG4962 134 GPTLSIRKFPKIKLT---LLDLI--IFGTMIRRAAKFLRRAVGI-RCNILISGGTGSGKTTL-LNALSGFIDS---DERV 203 (355)
T ss_pred CCccccccccccccc---HHHHH--HcCCcCHHHHHHHHHHHhh-ceeEEEeCCCCCCHHHH-HHHHHhcCCC---cccE
Confidence 344555666544332 22332 4667889999999999885 56999999999999953 1122222222 2378
Q ss_pred EEEeCcHHHHHH
Q psy11867 177 LCLAPTYELAIQ 188 (399)
Q Consensus 177 lil~Pt~~La~Q 188 (399)
+++=-|.||-.+
T Consensus 204 ItiEDtaELql~ 215 (355)
T COG4962 204 ITIEDTAELQLA 215 (355)
T ss_pred EEEeehhhhccC
Confidence 999888887544
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.98 E-value=0.19 Score=47.82 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++|+||+|.+.. .....+..++...+..+++++.+
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEe
Confidence 4457999999998843 23334455555555566655543
No 285
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.41 Score=46.17 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=24.1
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
..|.+..+.+.|+++-|+||+|||++... ++..+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~-v~~~l~ 67 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKF-VMEELE 67 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHH-HHHHHH
Confidence 34555555577899999999999977554 344443
No 286
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.96 E-value=0.023 Score=55.33 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=39.5
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|+++.|+||||||.++++|-+... ...++|+=|.-|+...+....++.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHcC
Confidence 689999999999999998877543 2348888899999988887776654
No 287
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.074 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.8
Q ss_pred CcEEEEccCCCCceehhHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~i 163 (399)
+.+++.||.|+|||.++.+-+
T Consensus 41 ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447999999999998776533
No 288
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.84 E-value=0.042 Score=56.31 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=43.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..++++.||||||||..+++|-+..... -++|+=|--|+...+....++++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~~-----S~VV~DpKGEl~~~Ta~~R~~~G~ 209 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWED-----SVVVHDIKLENYELTSGWREKQGQ 209 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCCC-----CEEEEeCcHHHHHHHHHHHHHCCC
Confidence 5799999999999999999999876532 388888999999999888887653
No 289
>PRK06921 hypothetical protein; Provisional
Probab=94.81 E-value=0.077 Score=48.85 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.++++.|++|+|||.... ++...+... .+..++++. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCceEEEEE-HHHHHHHH
Confidence 6889999999999996543 344444331 134455554 44444443
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.15 Score=48.24 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEe
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSA 286 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SA 286 (399)
....++++|||||.|.. .......+.+..-+.+..+++.+-
T Consensus 107 ~~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 36788999999999964 233333344444444555555443
No 291
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=0.13 Score=48.50 Aligned_cols=39 Identities=26% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCChHHHHHHhhhhhcC----C-CCcEEEEccCCCCceehhHH
Q psy11867 123 FYAPSKIQETALPTLLAD----P-PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~----~-g~~vi~~a~TGsGKT~~~~l 161 (399)
+..++|+|..++..+... . ++-+++.||.|.||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 356789999999887642 1 33589999999999976544
No 292
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.65 E-value=0.039 Score=55.33 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=40.7
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
.|+++.||||||||..+++|.+-.... -++|.-|--||...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~-----s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPG-----SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccC-----CEEEEECCCcHHHHHHHHHHHCC
Confidence 489999999999999999998743221 47888899999988888777765
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.56 E-value=0.35 Score=43.50 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
|.-+++.+++|+|||...+-.+...+. .+.++++++ +.+-..+..+.+..++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~-~e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVS-TQLTTTEFIKQMMSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEe-CCCCHHHHHHHHHHhCC
Confidence 689999999999999765433343333 235588888 44444666666666543
No 294
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.51 E-value=0.17 Score=51.07 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=24.9
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.+.+++||||+|+|... .+ ..+.+.+...|+.+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HH-HHHHHHHhccCCCeEEEEEE
Confidence 46789999999998542 22 33344555555666666644
No 295
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.51 E-value=0.068 Score=51.55 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
+..+++++|||||||.. +-.++..+.......+++.+=-..|
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCch
Confidence 46899999999999964 3455555543222334554433333
No 296
>PRK09183 transposase/IS protein; Provisional
Probab=94.51 E-value=0.22 Score=45.69 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+.++++.||+|+|||.....-...... .+..++++ +..+|..++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEE-eHHHHHHHH
Confidence 799999999999999655432222222 23345554 334554433
No 297
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.1 Score=49.84 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
-.++|+.+|+|+|||..+-+-.- ..+....-+..+..=+.++.+.+++
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~------~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAG------TTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHH------hhCCceEEeccccccHHHHHHHHHH
Confidence 36899999999999976644221 1222355556665555555554443
No 298
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=94.43 E-value=0.062 Score=55.78 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
..|+++.||||||||..+++|-+.... ..++|+=|--|+...+....++.+.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~-----gS~VV~DpKGE~~~~Ta~~R~~~G~ 190 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK-----GSVIALDVKGELFELTSRARKASGD 190 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC-----CCEEEEeCCchHHHHHHHHHHhCCC
Confidence 569999999999999999999876543 2488888999998888777776543
No 299
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.18 Score=53.61 Aligned_cols=44 Identities=16% Similarity=0.355 Sum_probs=26.1
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
.+.+++||||||+|.. .....+.+++..-+..+.+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 4678999999999943 2333334444444455655554 454433
No 300
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.38 E-value=0.26 Score=48.14 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEE
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCL 179 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 179 (399)
+.++++.||+|+|||...- .++..+........++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 5789999999999997643 334433322222334444
No 301
>PF05729 NACHT: NACHT domain
Probab=94.38 E-value=0.48 Score=39.55 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=24.3
Q ss_pred EEEEechhhHhhcCC------chHHHHHHHHh-CCCCCcEEEEEeeC
Q psy11867 249 VFVLDEADVMIATQG------HQDFSIRIQKR-LPSDCQIMLFSATY 288 (399)
Q Consensus 249 ~lViDEah~l~~~~~------~~~~~~~i~~~-l~~~~q~l~~SAT~ 288 (399)
++|||-+|.+..... ..+.+..++.. ++++.++++.|.+.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 599999999865322 22334344444 45677777766653
No 302
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.16 Score=52.14 Aligned_cols=39 Identities=13% Similarity=0.381 Sum_probs=23.9
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.+.+++||||+|+|... ....+..+++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~--A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH--SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH--HHHHHHHHHhcCCCCcEEEEEE
Confidence 45689999999998532 2333444555545555555543
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.18 Score=51.56 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCCh
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDK 290 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~ 290 (399)
....+++||||+|+|... ....+...+...+..+.+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~--A~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA--GFNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHH--HHHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 356789999999998542 2333344555545555555544 5333
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.24 E-value=0.54 Score=46.29 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..++++.||+|+|||..+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4589999999999996554
No 305
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.17 E-value=0.42 Score=42.79 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=33.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|..+++.+++|+|||...+.-+...+.. +..+++++- .+...++.+.++.++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 7899999999999997654434444432 335777764 444556666666554
No 306
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.16 E-value=0.24 Score=45.96 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=57.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCC-C---CCCCeEEEEeCcHHHHHHHHHHH-HHHhccCCCcEEEEEEcCchhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNP-S---IQEPQVLCLAPTYELAIQIGEVV-AKMGKHITDLSVRYAVRGENLER 216 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~-~---~~~~~~lil~Pt~~La~Q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 216 (399)
-.++++.|+||-|||...---.-.+-.. . ..-|.+++-+|...-....|..+ ..++..+.. ..
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~---- 128 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RD---- 128 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CC----
Confidence 3689999999999996432111111100 0 11245566667666555555433 333322210 00
Q ss_pred hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCch--HHHHHHHHhCCCCCcE
Q psy11867 217 NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQ--DFSIRIQKRLPSDCQI 281 (399)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~--~~~~~i~~~l~~~~q~ 281 (399)
+...+..... ..+.--+++++||||.|.++.. ... ......++.+.+..++
T Consensus 129 -----------~~~~~~~~~~--~llr~~~vrmLIIDE~H~lLaG-s~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 129 -----------RVAKLEQQVL--RLLRRLGVRMLIIDEFHNLLAG-SYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred -----------CHHHHHHHHH--HHHHHcCCcEEEeechHHHhcc-cHHHHHHHHHHHHHHhhccCC
Confidence 1111111100 1222347889999999998752 333 2344566777666553
No 307
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.13 E-value=0.14 Score=53.22 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKE-G-LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|.+.+..++... .++++||.++....+.++.+.|+.. | ..++.+|++++..+|.+...+.++|+.+|+|
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 35666666665443 2458999999999999999999875 4 6799999999999999999999999999875
No 308
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.12 E-value=0.43 Score=46.84 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-++++|++|+|||....
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999986544
No 309
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.10 E-value=0.34 Score=47.28 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=29.1
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCC---CCCcEEEEEeeCCh-hHHHHHHhh
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLP---SDCQIMLFSATYDK-EVMEFAQDM 299 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~---~~~q~l~~SAT~~~-~v~~~~~~~ 299 (399)
.+.++++||=+-+..........+..+..... +.-.++.+|||... .+...++.+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45678888876554211112222233333321 22356788999887 455555544
No 310
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.08 E-value=0.37 Score=45.46 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=24.8
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
..+++||||+|.+... .....+..++...+..+++++.|
T Consensus 100 ~~~vliiDe~d~l~~~-~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA-DAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCH-HHHHHHHHHHHhcCCCceEEEEc
Confidence 4579999999998322 23344555666666667666544
No 311
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.04 E-value=0.15 Score=54.12 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=53.6
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
...|+++||..|..-+.. +.+++..+..+||||||+..+. ....++.++.+.-++..-+.+|||...
T Consensus 7 ~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhc-CCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 446999999998766544 5688999999999999999764 566667777777777778999999854
No 312
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.01 E-value=0.065 Score=52.81 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=34.2
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS 170 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~ 170 (399)
++.|...+-.+++.+..=+++.||||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 57888888888888777889999999999965 55667766554
No 313
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.96 E-value=0.24 Score=49.26 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=53.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.-+++.+++|+|||...+--+..... .+.+++|++- .+-..|+...+++++.....
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~------------------- 136 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSG-EESASQIKLRAERLGLPSDN------------------- 136 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEc-cccHHHHHHHHHHcCCChhc-------------------
Confidence 688899999999999755443333322 2456888874 45566777777666533211
Q ss_pred CcEEEeCc---hhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 222 EQIIIGTP---GKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 222 ~~IlV~Tp---~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
+.+... ..+...+ .-.+.+++|||+++.+..
T Consensus 137 --l~~~~e~~l~~i~~~i------~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 --LYLLAETNLEAILATI------EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred --EEEeCCCCHHHHHHHH------HhhCCCEEEEechhhhcc
Confidence 222222 2233332 123678999999998753
No 314
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.86 E-value=0.19 Score=46.65 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=32.9
Q ss_pred ccccCCCCHHHHHHHHHc--CCCCChHHHHHHhhhhhc------------CCCCcEEEEccCCCCceehhHH
Q psy11867 104 TFEALHLKPELLKGVYEM--GFYAPSKIQETALPTLLA------------DPPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~--g~~~p~~iQ~~ai~~ll~------------~~g~~vi~~a~TGsGKT~~~~l 161 (399)
.+...++++.+.+.+.+. .+..+...+......+.. ..++.++++||||+|||....-
T Consensus 142 ~L~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 142 RLLRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred HHHHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHH
Confidence 345567777777776652 222223333322222211 1256888999999999976543
No 315
>PRK05973 replicative DNA helicase; Provisional
Probab=93.85 E-value=0.61 Score=42.04 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=35.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|.-+++.|++|+|||...+--+.+.... +..++|++-- +-..|+.+.+..++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 7889999999999997666555544432 4457777633 33567777777764
No 316
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.18 Score=51.81 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.5
Q ss_pred CcEEEEccCCCCceehhHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~i 163 (399)
+-+|++|+.|+|||....+-+
T Consensus 39 HA~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456999999999998766533
No 317
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.41 Score=46.65 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
++.+++.||.|+|||..+..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46799999999999976554
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.69 E-value=0.087 Score=46.71 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.++++.||+|.|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 589999999999996543
No 319
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.24 Score=47.86 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
....+++||||+|.|-. .....+.+.++..+..+.+|++|..
T Consensus 139 ~~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 35678999999999843 2333344444544445555555443
No 320
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.65 E-value=0.42 Score=50.60 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=20.3
Q ss_pred HHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 132 TALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 132 ~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
+.+..+......|+++.||+|+|||...-
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 33344444336799999999999997643
No 321
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.61 E-value=0.09 Score=50.19 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 132 TALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 132 ~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
..+..+... +.+++++|+||||||.. +-+++..+.. ..+++.+=.+.||.
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El~ 202 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCcccc
Confidence 334444443 79999999999999953 3344544433 34577777887764
No 322
>KOG0738|consensus
Probab=93.60 E-value=1.3 Score=42.36 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=35.2
Q ss_pred ceeEEEEechhhHhhcCCch---HHHHHH----HHhC-------CCCCcEEEEEee-CChhHHHHHHhhCCCCeEEeccc
Q psy11867 246 KIKVFVLDEADVMIATQGHQ---DFSIRI----QKRL-------PSDCQIMLFSAT-YDKEVMEFAQDMVPNPLIIKLKR 310 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~---~~~~~i----~~~l-------~~~~q~l~~SAT-~~~~v~~~~~~~~~~p~~i~~~~ 310 (399)
--..+.|||+|-+....|.. +...++ +-.+ .....++.+-|| +|=++.+-.++-+...+.|.+..
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 45689999999998654322 222222 2111 122335566777 55556665555555555555543
No 323
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.59 E-value=0.65 Score=43.71 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=23.9
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
..+++++||+|.+... ....+..++...+..+.+++.+
T Consensus 102 ~~~vviiDe~~~l~~~--~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD--AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH--HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999998532 2334445555555566666544
No 324
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.59 E-value=0.28 Score=42.47 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH-HHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA-IQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La-~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
..++++..++|.|||.+++--++..+..+ .+++++-=.+--. .--...++++ +++.....-.+..+....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~~~~~~-- 92 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFTWETQD-- 92 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCcccCCC--
Confidence 57999999999999999887777666543 3466554222110 0001222221 222222111111111100
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCc--hHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHh
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGH--QDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQD 298 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~ 298 (399)
..--+......++... ..+.-..+++||+||+-..+.. ++ .+.+..+++..|...-+|+.--..|+.+.+.+..
T Consensus 93 -~~e~~~~~~~~~~~a~--~~l~~~~ydlvVLDEi~~Al~~-gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 93 -RERDIAAAREGWEEAK--RMLADESYDLVVLDELTYALKY-GYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred -cHHHHHHHHHHHHHHH--HHHhCCCCCEEEEehhhHHHHC-CCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 0000011112232211 2333467899999999888764 43 4556677777777777777777777777776644
No 325
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.56 E-value=0.36 Score=51.61 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999654
No 326
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.55 E-value=0.47 Score=47.49 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=29.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~i 163 (399)
++|+++--.+.+.+.|... +..+ -++..+++||.|+|||.++.+-+
T Consensus 10 ~~f~dliGQe~vv~~L~~a---------------~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNA---------------FTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CCHHHhcCcHHHHHHHHHH---------------HHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 4567665556666655421 1111 14679999999999998765533
No 327
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.52 E-value=0.13 Score=44.98 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=25.0
Q ss_pred ceeEEEEechhhHhhcCCch----HHHHHHHHhCCCC-CcEEEEEeeCChhHHHHHHh
Q psy11867 246 KIKVFVLDEADVMIATQGHQ----DFSIRIQKRLPSD-CQIMLFSATYDKEVMEFAQD 298 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~----~~~~~i~~~l~~~-~q~l~~SAT~~~~v~~~~~~ 298 (399)
.=.++||||||.+....... ......+...+.. .-++++|-. +..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 44699999999987654442 1222333333433 445555554 4455555554
No 328
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=93.50 E-value=0.11 Score=53.88 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..++++.||||||||..+++|-|-.... -+||+=|--|+...+....++.+
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~~-----S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWPG-----SAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCCC-----CEEEEeCcchHHHHHHHHHHhCC
Confidence 6899999999999999999998865432 37888899999888777766654
No 329
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.35 Score=48.39 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCceehhHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l 161 (399)
+.+++.||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999977654
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.49 E-value=0.56 Score=43.31 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
++-+++.+++|+|||....--+..... .+.+++++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAA 107 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEe
Confidence 567788899999999765443333322 234566555
No 331
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.27 Score=49.62 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCceehhHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l 161 (399)
+-+++.||.|+|||.++..
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4459999999999987654
No 332
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.48 E-value=0.89 Score=43.81 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=62.3
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
.++.+.+.|+.|.|||+.. -++....+...+.| ++-.+-+.++++.+.++... ...+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lm--d~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~~~-----------~~~l------ 117 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLM--DLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLRGQ-----------DDPL------ 117 (362)
T ss_pred CCceEEEECCCCCchhHHH--HHHHHhCCcccccc----ccccHHHHHHHHHHHHHhCC-----------CccH------
Confidence 3799999999999999643 33333222222223 25567888888877776410 0000
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCChh
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDKE 291 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~ 291 (399)
..+.+.+ .+...++.|||.|.- + -+-.-.+.+++..+ ....-++..|-+.|.+
T Consensus 118 ---------~~va~~l-------~~~~~lLcfDEF~V~-D-iaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 ---------PQVADEL-------AKESRLLCFDEFQVT-D-IADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ---------HHHHHHH-------HhcCCEEEEeeeecc-c-hhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0112211 335668999999874 1 12333344555544 3456677777776643
No 333
>PHA00012 I assembly protein
Probab=93.46 E-value=0.66 Score=43.49 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.4
Q ss_pred EEEEccCCCCceehhHHHHHHhhCCC
Q psy11867 145 MIAQSQSGTGKTAAFTLTMLSRVNPS 170 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l~il~~l~~~ 170 (399)
-++.|..|||||+..+--++..+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47889999999998877666666554
No 334
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.45 E-value=0.12 Score=53.87 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=27.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCC-CCcEEEEccCCCCceehhHH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADP-PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~-g~~vi~~a~TGsGKT~~~~l 161 (399)
++|+++--.+.+++.|... +-.+. .+-+|++|+.|+|||....+
T Consensus 13 qtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4567665566666666542 11111 24468999999999976654
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.44 E-value=0.34 Score=41.94 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
++.+++.||.|+|||.....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALA 33 (188)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 36689999999999976543
No 336
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.44 E-value=0.25 Score=47.96 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=30.7
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCC-CCcEEEEEeeCChhHH
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPS-DCQIMLFSATYDKEVM 293 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~-~~q~l~~SAT~~~~v~ 293 (399)
++++++||+++.+............++..+.. ..|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 78899999999986543344444455555543 4466666666665443
No 337
>PRK10867 signal recognition particle protein; Provisional
Probab=93.39 E-value=0.7 Score=45.55 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTYELA 186 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~~La 186 (399)
+.-+++++++|+|||....--+...... .+.+++++. +.|.-+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHH
Confidence 4668899999999997655433332222 133455554 444443
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.36 E-value=0.61 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCCceehhHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTML 164 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il 164 (399)
+.-+++++++|+|||....--+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999977554333
No 339
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.33 E-value=0.33 Score=49.10 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=50.9
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+++||.++++.-+.++++.|++. |..+.++||+++..+|.++..+.++|+.+|+|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVV 81 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVI 81 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999764 77899999999999999999999999998875
No 340
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.25 Score=47.35 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=25.3
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++||||||.|.. .....+...++..+.+..++++|
T Consensus 140 g~~rVviIDeAd~l~~--~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--NAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4678999999999853 23333445555555556666665
No 341
>KOG1016|consensus
Probab=93.25 E-value=0.35 Score=49.85 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=99.1
Q ss_pred ccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 106 EALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 106 ~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
+++-|-+.|.+.++-. |+..++.--.+.+...-...|..+|+.-..|-|||+... ....-+.+......+|+|+|.
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVi-sF~diflRhT~AKtVL~ivPi 321 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVI-SFSDIFLRHTKAKTVLVIVPI 321 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEe-ehhHHHhhcCccceEEEEEeh
Confidence 3445778888877632 455555555555555554468899999999999997643 233333344455679999998
Q ss_pred HHHHHHHHHHHHHHhccC--------CCcEEEEEEcCc-hhhhhh------ccCCcEEEeCchhHHHhhhcc--------
Q psy11867 183 YELAIQIGEVVAKMGKHI--------TDLSVRYAVRGE-NLERNK------KITEQIIIGTPGKVLDWGLKY-------- 239 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~------~~~~~IlV~Tp~~l~~~~~~~-------- 239 (399)
..|-. ++.++..+...+ ..+.+...-.+. .+.... .....++..-.+++.-+..+.
T Consensus 322 NTlQN-WlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpk 400 (1387)
T KOG1016|consen 322 NTLQN-WLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPK 400 (1387)
T ss_pred HHHHH-HHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCcc
Confidence 87743 333344333221 012222222221 111111 112235554455443222210
Q ss_pred --------cccc-------------------CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 240 --------RFFD-------------------LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 240 --------~~~~-------------------~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
..++ --.-++||+||-|++- .....+...++.++..+++++....+-+.
T Consensus 401 kt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIK---N~~A~iS~aLk~IrtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 401 KTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIK---NITAEISMALKAIRTRRRIVLTGYPLQNN 476 (1387)
T ss_pred ccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceec---cchHHHHHHHHHhhhceeEEEeccccccc
Confidence 0000 1124799999999984 34444555666777778888877665544
No 342
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.24 E-value=0.3 Score=51.29 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=51.2
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|.+.......|+.+|+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVV 246 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVI 246 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999774 78899999999999999999999999998875
No 343
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.23 E-value=0.31 Score=45.84 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++++++.|++|+|||....
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999996544
No 344
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.23 E-value=0.078 Score=45.67 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
++++++.|++|+|||..+...+-..+.. +..+++ ++..+|...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEE-EEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeE-eecCceeccc
Confidence 7999999999999997765433333332 233444 4555666544
No 345
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=93.20 E-value=0.13 Score=52.89 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=41.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..|+++.||||||||..+++|-+-... .-++|+=|.-|+...+...-++.+
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL~~~-----gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTALKYG-----GPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhhcCC-----CCEEEEEChHHHHHHHHHHHHHcC
Confidence 579999999999999999999764332 238888899999888877766665
No 346
>KOG1133|consensus
Probab=93.20 E-value=0.077 Score=53.77 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=35.4
Q ss_pred CCChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhh
Q psy11867 124 YAPSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRV 167 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l 167 (399)
.+|+.||.+.+..+.+- .|+--|..+|||+|||+.-+-..+..+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 47999999988777431 388899999999999998877776654
No 347
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.19 E-value=0.4 Score=49.35 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
....+++||||+|.|... ....+...++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~--a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA--AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH--HHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999998532 2233334445555566666654
No 348
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.24 Score=52.58 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=54.9
Q ss_pred HHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 332 FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEG-----LNVGL-LSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 332 ~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g-----~~v~~-lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+-.+..++-...++++.+.++|.--+.+.++.|.+.+ ..+.+ |||.|+.++++.++++|.+|..+|||
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIli 186 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILI 186 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEE
Confidence 3445555555556889999999999999998887752 44433 99999999999999999999999986
No 349
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.18 E-value=0.38 Score=50.64 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=26.0
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHH
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVME 294 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~ 294 (399)
+..++||||+|++... ..+ .++..+ .+.++++++||-++....
T Consensus 109 ~~~IL~IDEIh~Ln~~--qQd---aLL~~l-E~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 109 KRTILFIDEVHRFNKA--QQD---ALLPWV-ENGTITLIGATTENPYFE 151 (725)
T ss_pred CceEEEEeChhhCCHH--HHH---HHHHHh-cCceEEEEEecCCChHhh
Confidence 4568999999998532 222 233333 346678888885554333
No 350
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.17 E-value=0.67 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.6
Q ss_pred cCCCCcEEEEccCCCCceehhH
Q psy11867 139 ADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 139 ~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.....|+++.||+|+|||...-
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred cCCCCceEEECCCCCCHHHHHH
Confidence 3346799999999999997653
No 351
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.13 Score=53.62 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred hhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|.+.+.+++... .++++||.++.+....++...|+.. |.+++++|+++++.+|.....+.+.|+.+|++
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 55666666665443 2358999999999999888888776 89999999999999999999999999999874
No 352
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.12 E-value=0.14 Score=49.21 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNP 169 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~ 169 (399)
+..++++||||||||... -.++..+..
T Consensus 134 ~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 689999999999999653 345555543
No 353
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.11 E-value=0.57 Score=39.86 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=27.9
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhh
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDM 299 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~ 299 (399)
...+++|+|....+.........+..+........-++.++|....+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 4667889999877521111122222222222344456677776555555555444
No 354
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.3 Score=50.56 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=24.0
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.+.+++||||+|.|... ....+.+.+...+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEe
Confidence 46789999999987532 2223344444445566666554
No 355
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.08 E-value=0.18 Score=46.43 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=32.4
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
.+-|.+.+..++..++..++++++||||||... ..++..+.. ...+++.+=-..|
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCCce
Confidence 344555665555543567999999999999653 345555533 2223444443333
No 356
>KOG0733|consensus
Probab=93.04 E-value=0.77 Score=46.38 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=91.0
Q ss_pred ccccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEE
Q psy11867 102 VKTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLC 178 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 178 (399)
--+|++.|--..+...|.-. -+++|--++.-.+. .+..+++++|+|+|||+.+-..+ ++ .
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-----~PsGvLL~GPPGCGKTLlAKAVA----NE--a------ 569 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-----APSGVLLCGPPGCGKTLLAKAVA----NE--A------ 569 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-----CCCceEEeCCCCccHHHHHHHHh----hh--c------
Confidence 45788888777777766532 23344333333332 26889999999999997542111 00 0
Q ss_pred EeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 179 LAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 179 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
+.+...+-|...+. -.|+--++-...+... -.-+.-.++.|||.|.|
T Consensus 570 -----------------------g~NFisVKGPELlN--------kYVGESErAVR~vFqR--AR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 570 -----------------------GANFISVKGPELLN--------KYVGESERAVRQVFQR--ARASAPCVIFFDEIDAL 616 (802)
T ss_pred -----------------------cCceEeecCHHHHH--------HHhhhHHHHHHHHHHH--hhcCCCeEEEecchhhc
Confidence 11111111211111 1122222322221110 11335578999999998
Q ss_pred hhcCCc--h----HHHHHHHHhC---CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChh
Q psy11867 259 IATQGH--Q----DFSIRIQKRL---PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNID 329 (399)
Q Consensus 259 ~~~~~~--~----~~~~~i~~~l---~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~ 329 (399)
....+. . ..+..++..| .....+.++-||-.+++. ||-..+-++-+ +..|+-.++.+
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI--------DpAiLRPGRlD------k~LyV~lPn~~ 682 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII--------DPAILRPGRLD------KLLYVGLPNAE 682 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc--------chhhcCCCccC------ceeeecCCCHH
Confidence 643221 1 2233333333 345678888999766533 33333333222 23566777778
Q ss_pred hHHHHHHHHhcc
Q psy11867 330 EKFEAVSNIYGV 341 (399)
Q Consensus 330 ~k~~~l~~ll~~ 341 (399)
++...|..+.+.
T Consensus 683 eR~~ILK~~tkn 694 (802)
T KOG0733|consen 683 ERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHhcc
Confidence 888888777764
No 357
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=93.03 E-value=0.14 Score=53.03 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=40.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..|+++.||||+|||..+++|-+-... .-++|+=|..|+...+....++.+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~~-----gS~VV~DpKgEl~~~Ta~~R~~~G 274 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKWG-----GPLVVLDPSTEVAPMVSEHRRDAG 274 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcCC-----CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 579999999999999999999864322 237777799999888887776664
No 358
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.54 Score=44.64 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.5
Q ss_pred hHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHH
Q psy11867 127 SKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~i 163 (399)
+|+|...+..+... -++-+++.||.|.|||..+..-+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 57777777776632 13568899999999997765433
No 359
>PRK04195 replication factor C large subunit; Provisional
Probab=92.86 E-value=0.34 Score=48.78 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=28.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++-.++...+.|... +.....+ +.+.+++.||+|+|||....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4567776666666666542 0011111 25789999999999996543
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.85 E-value=0.52 Score=47.00 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
|+-+.+.||||+|||.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 56788999999999987654
No 361
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.78 E-value=0.31 Score=49.26 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
....+++||||||+|.. .....+.+.+...|+.+.+++++
T Consensus 115 ~~~~KVvIIDEad~Lt~--~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH--HHHHHHHHHHhhcCCceEEEEEE
Confidence 35678999999999854 23333445555556666666655
No 362
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.5 Score=48.00 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=25.0
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++||||+|+|.. .....+...+...+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~--~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK--QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4668999999999854 23334445555555566666544
No 363
>PHA00729 NTP-binding motif containing protein
Probab=92.62 E-value=0.87 Score=40.61 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=36.2
Q ss_pred EEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCch----HHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHh
Q psy11867 224 IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQ----DFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQD 298 (399)
Q Consensus 224 IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~----~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~ 298 (399)
.++.+...++..+.... -.....+++||||+=.-.....+. .....+...+.+.++++.+...-+..+...++.
T Consensus 61 ~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 61 SYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred EEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 44444455555432211 112345789999943222111111 111123333445677788877766666666655
No 364
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.31 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=16.6
Q ss_pred CcEEEEccCCCCceehhHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~i 163 (399)
+-++++||.|+|||.++.+-+
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 445999999999998776543
No 365
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=92.59 E-value=0.16 Score=52.76 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
..|+++.||||||||..+++|-+... +..++|+=|--|+..-+....++
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~-----~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW-----GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC-----CCCEEEEeCcHHHHHHHHHHHHH
Confidence 58999999999999999999988643 23488888999998766665543
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.58 E-value=0.16 Score=48.33 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 132 TALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 132 ~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
..+..+... +.+++++|+||||||.. +-+++..+.. ..+++.+=-+.||.
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El~ 200 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCccc
Confidence 334444444 79999999999999953 3455555533 34566655555554
No 367
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.59 Score=45.16 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCceehhHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l 161 (399)
+.+++.||.|+|||..+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 4468999999999977654
No 368
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.53 E-value=0.97 Score=45.23 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=85.4
Q ss_pred CChHHHHHHhhhhhc----CCC----CcEEEEccCCCCceehhH-HHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLA----DPP----HNMIAQSQSGTGKTAAFT-LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~----~~g----~~vi~~a~TGsGKT~~~~-l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
.+-|+|.-.+-.++- +.| .-.+|..|-|-|||.... +.....+.....+....|++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 567889988888861 112 356888899999995443 33333333335667799999999999988888887
Q ss_pred HhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHh----hhccccccCCceeEEEEechhhHhhcCCchHHHHHH
Q psy11867 196 MGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDW----GLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRI 271 (399)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~----~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i 271 (399)
+......+... .....+....+.+..... .......+-.+..+.|+||.|..... .+.+..+
T Consensus 141 mv~~~~~l~~~-----------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~---~~~~~~~ 206 (546)
T COG4626 141 MVKRDDDLRDL-----------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ---EDMYSEA 206 (546)
T ss_pred HHHhCcchhhh-----------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH---HHHHHHH
Confidence 76554321111 111111111121111111 01223344557789999999997532 1445555
Q ss_pred HHhC--CCCCcEEEEEe
Q psy11867 272 QKRL--PSDCQIMLFSA 286 (399)
Q Consensus 272 ~~~l--~~~~q~l~~SA 286 (399)
..-+ .++.+++..|.
T Consensus 207 ~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 207 KGGLGARPEGLVVYITT 223 (546)
T ss_pred HhhhccCcCceEEEEec
Confidence 4444 34566666655
No 369
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.49 Score=48.47 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=28.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC-CCCcEEEEccCCCCceehhHHHH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD-PPHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~-~g~~vi~~a~TGsGKT~~~~l~i 163 (399)
.+|+++--.+.+.+.|... +..+ .++-.+++||.|+|||.++-+-+
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4566665556666555432 1111 14567889999999998776543
No 370
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.36 E-value=0.82 Score=43.30 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=25.2
Q ss_pred hHHHHHHhhhhhcC-----CCCcEEEEccCCCCceehhHHHH
Q psy11867 127 SKIQETALPTLLAD-----PPHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~-----~g~~vi~~a~TGsGKT~~~~l~i 163 (399)
+|+|...+..+.+. -++-.++.||.|.||+..+..-+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 56777777666432 13567799999999997665433
No 371
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.33 E-value=0.28 Score=46.83 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 115 LKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 115 ~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
+..+.+.|+ .++.+...+..+... +.+++++++||||||... -.++..+.. ..+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~-~~~ili~G~tGsGKTTll-~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAA-RLAFLISGGTGSGKTTLL-SALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhC-CCeEEEECCCCCCHHHHH-HHHHccCCC---CCcEEEECCccee
Confidence 455556666 346677777777765 789999999999998643 234444332 3356777777676
No 372
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.30 E-value=0.28 Score=48.23 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=24.9
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
|-......+..+.. ++++++.+++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTI--KKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 44455556666666 7999999999999997654
No 373
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.27 E-value=1 Score=45.41 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCCceehhHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~i 163 (399)
++.++++||.|+|||.++.+-+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3689999999999998776533
No 374
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.20 E-value=0.76 Score=43.87 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=26.3
Q ss_pred hHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHH
Q psy11867 127 SKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~i 163 (399)
+|+|...+..+.+. -++-+++.||.|.||+..+..-+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 57777777666542 24678899999999997665433
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.17 E-value=0.55 Score=47.25 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=44.0
Q ss_pred HhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 133 ALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 133 ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
.+..++.+ +|.-+++.+|+|+|||...+--+...+. .+.+++|++ ..|-..|+.+.++.++-
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 34555544 4789999999999999866554444443 344688877 66777888888888753
No 376
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.16 E-value=1 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.5
Q ss_pred cCCCCcEEEEccCCCCceehhH
Q psy11867 139 ADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 139 ~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.....|+++.||+|+|||...-
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHH
Confidence 3345799999999999997653
No 377
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.14 E-value=0.15 Score=47.07 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH
Q psy11867 129 IQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA 186 (399)
Q Consensus 129 iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 186 (399)
...+.+....+. +.+++++|+||||||... -.++..+... ..+++++-.+.|+-
T Consensus 115 ~~~~~l~~~v~~-~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 115 EIAEFLRSAVRG-RGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPELR 168 (270)
T ss_dssp HHHHHHHHCHHT-TEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S-
T ss_pred HHHHHHhhcccc-ceEEEEECCCccccchHH-HHHhhhcccc--ccceEEecccccee
Confidence 333444444444 799999999999999654 4555555443 35677777776653
No 378
>PTZ00293 thymidine kinase; Provisional
Probab=92.10 E-value=0.44 Score=42.00 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
|+=.++.||++||||.-.+- .+.+... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~--ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY--SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH--cCCceEEEEecc
Confidence 56678899999999954333 3333322 234578887754
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.10 E-value=0.33 Score=46.49 Aligned_cols=42 Identities=14% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
+..++++||||||||... -.++..+... ...+++.+--..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC-CCCEEEEEcCChhh
Confidence 688999999999999654 3455555432 23456665554444
No 380
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.09 E-value=0.71 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCCceehhHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~i 163 (399)
+..+++.||.|+|||.++..-+
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CceEEEECCCCCChHHHHHHHH
Confidence 3678999999999998765533
No 381
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.07 E-value=0.2 Score=44.47 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=18.2
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhh
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRV 167 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l 167 (399)
+++.+++.||.|+|||.. +--++..+
T Consensus 19 ~~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 358899999999999963 33344444
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.06 E-value=0.63 Score=39.13 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=73.9
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHH-HHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCC
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELA-IQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La-~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
-+.+-.++|.|||.+++--++..+.. +.+++++-=.+.-. .--...++++ +++.....-.+..+...... .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~---g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~-~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH---GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDE-E 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChH-H
Confidence 35566778999999887777766654 34566632111100 0001223333 23332221111111000000 0
Q ss_pred cEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCC-chHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQG-HQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 223 ~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~-~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
+. ......+.... +.+....++++|+||+-..+..+. -.+.+..+++..|...-+|+.+-..|+.+.+.+.
T Consensus 76 ~~--~~a~~~~~~a~--~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 76 DI--AAAAEGWAFAK--EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HH--HHHHHHHHHHH--HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 00 00011222211 233356789999999988765321 3456677888888888888888888888777654
No 383
>PRK10436 hypothetical protein; Provisional
Probab=92.05 E-value=0.16 Score=50.44 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=29.0
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~ 169 (399)
.+-|.+.+..++..++.-++++||||||||... ..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 355666666666554678999999999999753 345665543
No 384
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.01 E-value=0.48 Score=49.00 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=22.8
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLF 284 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~ 284 (399)
...+++||||+|+|... ....+.+.+..-+..+.+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~--a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH--SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH--HHHHHHHHHHcCCCCeEEEEe
Confidence 46789999999998542 223333444444444555554
No 385
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.01 E-value=0.4 Score=50.45 Aligned_cols=57 Identities=32% Similarity=0.350 Sum_probs=51.1
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+++|.++++.-|.+.++.+++. |+++..+||+++..+|..+++.+.+|+.+|+|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvV 369 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 3468999999999999998887654 78999999999999999999999999999876
No 386
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.91 E-value=0.27 Score=49.39 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=31.3
Q ss_pred HHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 118 VYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 118 l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
|..+|| .+-|.+.+..++..+..-++++||||||||... ..++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 444554 466677777666653456889999999999653 34555554
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.91 E-value=0.12 Score=44.83 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.9
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.++-|...+...+.. |..+++.+|||||||...
T Consensus 10 ~~~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 456677777777776 899999999999999654
No 388
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.82 E-value=0.87 Score=44.08 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.-+++.+++|+|||...+..+..... .+.+++|++-. +-..|+...+.+++.....+. ....
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~---l~~e---------- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGE-ESPEQIKLRADRLGISTENLY---LLAE---------- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEE---EEcc----------
Confidence 688899999999999755433332222 23468888754 445677666666543221110 0000
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
...+.+.+.+. -.+.+++|||+++.+.
T Consensus 145 -----~~le~I~~~i~------~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----TNLEDILASIE------ELKPDLVIIDSIQTVY 171 (372)
T ss_pred -----CcHHHHHHHHH------hcCCcEEEEcchHHhh
Confidence 11233333321 2367899999999885
No 389
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.78 E-value=0.7 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCCceehhHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~i 163 (399)
++.+++.||.|+|||..+..-+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3568899999999998766533
No 390
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.72 E-value=0.8 Score=40.28 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
|.-+.+.+++|+|||...+..+.+.... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 6788999999999998766555444332 3457777764
No 391
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=0.96 Score=46.54 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 244 LSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 244 ~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
....+++||||+|+|.. .....+...+..-+..+.+|+.+ |-+
T Consensus 117 ~~~~KVvIIdev~~Lt~--~a~naLLk~LEepp~~~~fIl~t-~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST--NAFNALLKTLEEPPPHVKFIFAT-TEP 159 (576)
T ss_pred cCCceEEEEEChhhCCH--HHHHHHHHHHHcCCCCeEEEEEe-CCh
Confidence 35678999999999853 22233334444444455555444 533
No 392
>KOG0383|consensus
Probab=91.52 E-value=0.023 Score=58.38 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=50.0
Q ss_pred HHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 331 KFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 331 k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
|+..|..+++.. ..++++||..-.+..+.|-..+...+ ....+.|..+..+|.+++.+|..
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 444555555443 33699999999999999999998888 88899999999999999999984
No 393
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.47 E-value=0.85 Score=43.46 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred ChHHHHHHhhhhhcC-----CCCcEEEEccCCCCceehhHH
Q psy11867 126 PSKIQETALPTLLAD-----PPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~-----~g~~vi~~a~TGsGKT~~~~l 161 (399)
.+|||...+..+.+. -++-.++.||.|.||+..+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 467777777766432 245778999999999976654
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.46 E-value=0.19 Score=52.51 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=35.8
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
..-++|+|+.|++.+. .....+.+++++.|++...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~-~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDP-ALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcc-cHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3459999999998764 666778899999999999999988854
No 395
>KOG2170|consensus
Probab=91.45 E-value=0.4 Score=44.19 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=35.0
Q ss_pred eEEEEechhhHhhcCCchHHHHHHHHhCC-------CCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 248 KVFVLDEADVMIATQGHQDFSIRIQKRLP-------SDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 248 ~~lViDEah~l~~~~~~~~~~~~i~~~l~-------~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
.++|+||+|.|.. +..+.+.-++...+ .+.-+|++|.+-...+.+++....
T Consensus 180 slFIFDE~DKmp~--gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 180 SLFIFDEVDKLPP--GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred ceEEechhhhcCH--hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 4899999999953 56666655555433 234578999888877776665544
No 396
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.42 E-value=0.47 Score=46.23 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.|++..||+|+|||-.|.
T Consensus 209 ~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 7999999999999996554
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.42 E-value=1.7 Score=46.97 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
...|.++.||+|+|||...-
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCCceEEEcCCCCCHHHHHH
Confidence 46799999999999996654
No 398
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.37 E-value=0.79 Score=39.08 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=40.8
Q ss_pred cCCceeEEEEechhhHhhcCC-chHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHh
Q psy11867 243 DLSKIKVFVLDEADVMIATQG-HQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQD 298 (399)
Q Consensus 243 ~~~~~~~lViDEah~l~~~~~-~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~ 298 (399)
.-..+++||+||+-..+..+. -.+.+..+++..|+...+|+..-..|+.+.+.+..
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 346789999999988775421 33456677787788888888777788877776643
No 399
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.27 E-value=0.21 Score=51.19 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=32.7
Q ss_pred HHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 118 VYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 118 l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
|.++|| .+-|.+.+..++..+...++++||||||||... ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 445555 456666776666654678899999999999763 45666654
No 400
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.23 E-value=0.93 Score=44.40 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.5
Q ss_pred CcEEEEccCCCCceehhHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~ 162 (399)
+.++++||.|+|||.++.+-
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 45889999999999877653
No 401
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.20 E-value=1.1 Score=42.39 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
++++++.+++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 689999999999999643
No 402
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.19 E-value=1.1 Score=48.99 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=42.1
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGL--NVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
..++++||++|.+..+.++..|..... ...++.-+++...|..++++|+.++-.||
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iL 808 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAIL 808 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEE
Confidence 457999999999999999999976422 13333335555678999999998877776
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.16 E-value=2.4 Score=40.10 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+.+.||+|+|||....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 6778899999999996654
No 404
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.15 E-value=0.7 Score=49.13 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=29.9
Q ss_pred cccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|++++-.+.+.+.|... .+..|.-++..- + .+++.+++.||+|+|||+.+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g----~-~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG----I-RPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC----C-CCCceEEEECCCCCCHHHHH
Confidence 3566666666666666542 222222222111 1 12578999999999999654
No 405
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.07 E-value=0.72 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.3
Q ss_pred CcEEEEccCCCCceehhHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~i 163 (399)
..+|+.+|.|+|||.++.+-+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578899999999998876544
No 406
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.06 E-value=0.56 Score=44.26 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=46.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+..+..-.+++. .|.+ +..+++.|..-+..+... +++++++++||||||. ++.+++..+... .+.+.+=-
T Consensus 109 IRk~~~~~~t~~---~l~~--~gt~~~~~~ayL~~~ie~-~~siii~G~t~sGKTt-~lnall~~Ip~~---~rivtIEd 178 (312)
T COG0630 109 IRKFSDEPITPE---DLIE--YGTISPEQAAYLWLAIEA-RKSIIICGGTASGKTT-LLNALLDFIPPE---ERIVTIED 178 (312)
T ss_pred EEcCCCCCCCHH---HHhh--cCCCCHHHHHHHHHHHHc-CCcEEEECCCCCCHHH-HHHHHHHhCCch---hcEEEEec
Confidence 444554444443 3333 335667777777777766 8999999999999995 355666555433 33666656
Q ss_pred cHHH
Q psy11867 182 TYEL 185 (399)
Q Consensus 182 t~~L 185 (399)
|.|+
T Consensus 179 t~E~ 182 (312)
T COG0630 179 TPEL 182 (312)
T ss_pred cccc
Confidence 6554
No 407
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.00 E-value=0.81 Score=46.51 Aligned_cols=39 Identities=15% Similarity=0.414 Sum_probs=23.8
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.+.+++||||+|+|... ....+.+.+...+....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~--a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH--HHHHHHHHHhCCCCCEEEEEEe
Confidence 46789999999998542 2223334444445556666554
No 408
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.98 E-value=0.17 Score=45.27 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=12.0
Q ss_pred EEEEccCCCCceeh
Q psy11867 145 MIAQSQSGTGKTAA 158 (399)
Q Consensus 145 vi~~a~TGsGKT~~ 158 (399)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 409
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.98 E-value=1.4 Score=41.72 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=25.9
Q ss_pred CChHHHHHHhhhhhc----C-CCCcEEEEccCCCCceehhHH
Q psy11867 125 APSKIQETALPTLLA----D-PPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~----~-~g~~vi~~a~TGsGKT~~~~l 161 (399)
.++|+|...+..+.+ + -++-.++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 356777777766643 1 145789999999999966543
No 410
>KOG2028|consensus
Probab=90.97 E-value=0.73 Score=43.69 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=32.2
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
-.+|+.+|.|+|||..+-+-+-.. .....+.+=++-|.+-.+.+.+.+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts---k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS---KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc---CCCceEEEEEeccccchHHHHHHHHH
Confidence 478999999999997654432211 11234567777777776666665554
No 411
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.88 E-value=0.72 Score=44.74 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=20.4
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~ 169 (399)
.|+.+++.||+|+|||..... +...+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhhcc
Confidence 489999999999999975433 4444443
No 412
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.82 E-value=2.1 Score=40.85 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=24.2
Q ss_pred EEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHH
Q psy11867 146 IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 146 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 188 (399)
++.++.|+|||.+....++..+.......++++. ||..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHH
Confidence 4678999999998877677666543333445555 66554444
No 413
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.77 E-value=1.3 Score=47.74 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
...|+++.||+|+|||...-
T Consensus 199 ~~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred ccCCeEEECCCCCCHHHHHH
Confidence 46799999999999997654
No 414
>PHA00350 putative assembly protein
Probab=90.71 E-value=1.5 Score=42.58 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=17.7
Q ss_pred EEEEccCCCCceehhHH-HHHHhhCC
Q psy11867 145 MIAQSQSGTGKTAAFTL-TMLSRVNP 169 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l-~il~~l~~ 169 (399)
.++.|..|||||+..+- -++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 46789999999987764 34444443
No 415
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.64 E-value=0.92 Score=45.65 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
++.+++.||+|+|||+..
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 688999999999999754
No 416
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.63 E-value=1.1 Score=40.40 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|.-+++.+++|+|||.....-+...+. .+.+++++.=- +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 788999999999999765544444443 24457777653 33456666666664
No 417
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.54 E-value=0.42 Score=41.26 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.=.++.+|..||||..-+--+-.... .+.++++..|-..- .+ +........|.. .
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~iD~-------------R~-~~~~V~Sr~G~~-------~ 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAIDT-------------RY-GVGKVSSRIGLS-------S 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH---cCCeEEEEeccccc-------------cc-ccceeeeccCCc-------c
Confidence 456789999999999743322222212 33457777664310 00 111111111211 2
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
..++|-.+..+.+.+..... ...+++|.||||+.+-
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQFFD 95 (201)
T ss_pred cceecCChHHHHHHHHhccc--CCCcCEEEEehhHhCC
Confidence 23667777777776543221 1128899999998864
No 418
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.52 E-value=1.3 Score=39.45 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
|.-+++.+++|+|||...+--+...+.. +..++|++- .+-..++.+.+..++.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~-e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISL-EEREERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEC-CCCHHHHHHHHHHcCC
Confidence 6889999999999986544334443432 345777765 3456777777776643
No 419
>PRK09354 recA recombinase A; Provisional
Probab=90.40 E-value=0.67 Score=44.19 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+-+.+.+|+|||||...+..+.+... .+..|+|+..-..+-. +.++.++-.+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~---~~a~~lGvdld-------------------- 113 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP---VYAKKLGVDID-------------------- 113 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHH---HHHHHcCCCHH--------------------
Confidence 688889999999999877665555443 3456888876655543 33444432211
Q ss_pred CcEEEeCchhHHHhhhcc-ccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDWGLKY-RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~-~~~~~~~~~~lViDEah~l~ 259 (399)
++++..|...-+.+... ..+.-..+++||||=+-.+.
T Consensus 114 -~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 114 -NLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred -HeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 24445443322211100 11223468899999987664
No 420
>KOG0732|consensus
Probab=90.29 E-value=0.52 Score=50.72 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=36.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCC---CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFY---APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~---~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
...|++.|........|+++-+. +|.-+|.-.| .+++.++.++|.|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-----tpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-----TPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-----CCCcceeecCCCCCchhHHH
Confidence 46788888888888888876432 2222222222 24789999999999999754
No 421
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.28 E-value=0.66 Score=48.37 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=50.6
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++|.++++.-|.+.++.+++. |.++..+||+++..+|..+++...+|+.+|+|
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiV 343 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVV 343 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEE
Confidence 458999999999999998887764 78999999999999999999999999998875
No 422
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.21 E-value=2.6 Score=36.22 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH-HHHHHHHHHHHhccCCCcEEEEEEcC--chhhhhhcc
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL-AIQIGEVVAKMGKHITDLSVRYAVRG--ENLERNKKI 220 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L-a~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (399)
-+++-...|-|||.+++=-++..+-. +.++.|+-=.+-= -.--+..+.++ +..+.+..-+ ...+.+.+.
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh---G~rv~vvQFiKg~~~~GE~~~~~~~-----~~~v~~~~~~~g~tw~~~~~~ 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH---GLRVGVVQFIKGGWKYGEEAALEKF-----GLGVEFHGMGEGFTWETQDRE 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC---CCEEEEEEEeecCcchhHHHHHHhh-----ccceeEEecCCceeCCCcCcH
Confidence 36677778889999988777776654 3456555421111 01112223333 1122221111 111111000
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCch--HHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHh
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQ--DFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQD 298 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~--~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~ 298 (399)
.++ ..+...+.... ..+.-...++||+||.-..+.. ++. +.+..++..-|....+|+..-..|+.+.+.+..
T Consensus 102 -~d~--~aa~~~w~~a~--~~l~~~~ydlviLDEl~~al~~-g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 102 -ADI--AAAKAGWEHAK--EALADGKYDLVILDELNYALRY-GLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred -HHH--HHHHHHHHHHH--HHHhCCCCCEEEEehhhHHHHc-CCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 022 33344444322 2333447899999999988764 433 455666666666666776666677777776654
Q ss_pred h
Q psy11867 299 M 299 (399)
Q Consensus 299 ~ 299 (399)
.
T Consensus 176 V 176 (198)
T COG2109 176 V 176 (198)
T ss_pred H
Confidence 3
No 423
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.20 E-value=1.3 Score=39.19 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
|.-+++.+++|+|||...+.-+..... .+..++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE
Confidence 677899999999999766554444332 245688874
No 424
>KOG1513|consensus
Probab=90.17 E-value=0.56 Score=48.58 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=89.7
Q ss_pred CChHHHHHHhhhhhcC--------CCCcEEEEc--cCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD--------PPHNMIAQS--QSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVA 194 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--------~g~~vi~~a--~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 194 (399)
.++..|.+|+-..... ..-..++-. ..|-|.|.|-.+ ++...+ ...++|.++-+..|-.+-.+-++
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiI--feNyLk--GRKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGII--FENYLK--GRKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEE--ehhhhc--ccceeEEEEeccccccchhhchh
Confidence 5667788777555432 112334433 355566766543 333333 34579999999999888888888
Q ss_pred HHhccCCCcEEEEEEcC----chhhhhhccCCcEEEeCchhHHHhhhc-cccc---------c--CCceeEEEEechhhH
Q psy11867 195 KMGKHITDLSVRYAVRG----ENLERNKKITEQIIIGTPGKVLDWGLK-YRFF---------D--LSKIKVFVLDEADVM 258 (399)
Q Consensus 195 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~IlV~Tp~~l~~~~~~-~~~~---------~--~~~~~~lViDEah~l 258 (399)
.++.. ++.+.....- -+-+.....+..++++|...|+--... .+.. | -..=.++||||||+-
T Consensus 340 DigA~--~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 340 DIGAT--GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred hcCCC--CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 87654 4444322111 111111122335999999877643221 1110 0 122368999999975
Q ss_pred hh--------cCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 259 IA--------TQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 259 ~~--------~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
-. .-.....+..+.+.|| +.+++.-|||
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 32 0123455667888886 7789999999
No 425
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=0.13 Score=47.62 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..|+++.+|||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 5899999999999997664
No 426
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.13 E-value=1.4 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~ 162 (399)
++.+|+.||.|+|||.+..+-
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 355799999999999876543
No 427
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.07 E-value=0.61 Score=44.00 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=51.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+-+.+.+|+|||||...+..+...... +..++++..-..+-.+ .++.++-...
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~---~a~~lGvd~~-------------------- 108 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV---YARKLGVDID-------------------- 108 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHH---HHHHcCCCHH--------------------
Confidence 6888999999999998766555544432 4557777655444432 3444432110
Q ss_pred CcEEEeCchhHHHhhhcc-ccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDWGLKY-RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~-~~~~~~~~~~lViDEah~l~ 259 (399)
++++..|...-+.+... ..+.-..++++|||-+-.+.
T Consensus 109 -~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 109 -NLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred -HeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 24455444332221110 11123468899999988764
No 428
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.04 E-value=0.48 Score=52.76 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=45.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC--CCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS--IQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
+.++++.|..|||||.+-..-++..+... ..-.+.|||+-|+.=+..+.+.+..-
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 78999999999999988777777777663 45668999999999888877666553
No 429
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.98 E-value=1.3 Score=39.43 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~Pt 182 (399)
|.-+.+.+++|+|||...+.-+....... .....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 68889999999999976655444433221 012457777754
No 430
>PRK13764 ATPase; Provisional
Probab=89.96 E-value=0.5 Score=48.41 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
+++++++|+||||||.. +-+++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 68899999999999964 345555554
No 431
>KOG1806|consensus
Probab=89.87 E-value=0.61 Score=49.57 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 122 GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 122 g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
++-..++-|-+++-.-.. +....+.+|+|+|||-... -++.-+......++++|++....-..|..+.+.+.
T Consensus 735 n~v~ft~~qveai~sg~q--pgltmvvgppgtgktd~av-qil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQ--PGLTMVVGPPGTGKTDVAV-QILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCC--CCceeeecCCCCCCcchhh-hhhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 345678899999988777 7999999999999997765 34444444557788999999888778877776654
No 432
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.85 E-value=0.45 Score=42.88 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.-++++.|++|||||. +++-++..+... ...+++++|.
T Consensus 13 ~fr~viIG~sGSGKT~-li~~lL~~~~~~--f~~I~l~t~~ 50 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTT-LIKSLLYYLRHK--FDHIFLITPE 50 (241)
T ss_pred CceEEEECCCCCCHHH-HHHHHHHhhccc--CCEEEEEecC
Confidence 5689999999999995 444555554432 2446666673
No 433
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.76 E-value=1.4 Score=42.72 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.+|++.++||+||++.+.
T Consensus 101 ~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 101 GLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCcEEEecCCCccHHHHHH
Confidence 7999999999999997664
No 434
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.75 E-value=2.4 Score=45.18 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+++.+++.||+|+|||...
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3689999999999999643
No 435
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.70 E-value=1.3 Score=47.14 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|..+++.+|+|+|||...
T Consensus 349 g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 678999999999999543
No 436
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.56 E-value=0.69 Score=51.77 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+.+++++.|+.|||||.+-.--++..+..+.....+++|+-|+.=|..+.+.+....
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 468999999999999988776677666555455679999999999988877666554
No 437
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.51 E-value=0.7 Score=43.69 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+-+.+.+|+|||||...+..+..... .+..++++..-..+-.+ .++.++-.. +
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~---~a~~lGvd~--------------~------ 108 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV---YAKKLGVDL--------------D------ 108 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH---HHHHcCCCH--------------H------
Confidence 688899999999999766655544433 34568888875555432 334433211 1
Q ss_pred CcEEEeCchh---HHHhhhccccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGK---VLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~---l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
++++..|.. ++..+.. .+.-..++++|||-+-.+.
T Consensus 109 -~l~v~~p~~~eq~l~i~~~--li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 109 -NLLISQPDTGEQALEIADS--LVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred -HheecCCCCHHHHHHHHHH--HHhccCCCEEEEcchHhhc
Confidence 244444433 3332211 1223468899999987664
No 438
>PRK09087 hypothetical protein; Validated
Probab=89.48 E-value=1.1 Score=40.10 Aligned_cols=41 Identities=5% Similarity=-0.013 Sum_probs=23.9
Q ss_pred eEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 248 KVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 248 ~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
+++++|++|.+. .....+..++..+......++++++.++.
T Consensus 89 ~~l~iDDi~~~~---~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG---FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC---CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 379999999863 22344445554444434456666665544
No 439
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.41 E-value=2.7 Score=45.38 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=22.0
Q ss_pred HHHHhhhhh----cCCCCcEEEEccCCCCceehhH
Q psy11867 130 QETALPTLL----ADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 130 Q~~ai~~ll----~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
|...+..++ .....|+++.||.|+|||...-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 555555443 4345799999999999996543
No 440
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=89.40 E-value=3.6 Score=44.22 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=70.5
Q ss_pred CcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc-C-CCCcEEEEecchHh
Q psy11867 279 CQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV-V-TIGQAMIFCHTRKT 356 (399)
Q Consensus 279 ~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~-~-~~~k~IIF~~s~~~ 356 (399)
.++.+||.|......++..-|-.+- +.+.... ........-..+.....|..++.+-+.. + ...|+||-|.|.+.
T Consensus 504 ~kl~GmTGTa~~e~~Ef~~iY~l~v--~~iPt~k-p~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 504 EKLAGMTGTAITESREFKEIYNLYV--LQVPTFK-PCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred chhcccCCCCHHHHHHHHHHhCCCE--EECCCCC-CceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 3678999998766666655554332 2222221 1111111112334556777776664433 3 33589999999999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 357 AAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 357 a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
.+.|+..|.+.|++..+++..-...|-..+-+.=+.|.+
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g~V 619 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAV 619 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCCcE
Confidence 999999999999999999998554444444443344443
No 441
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.36 E-value=0.27 Score=42.07 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=28.0
Q ss_pred hhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEechhhHhh
Q psy11867 217 NKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDEah~l~~ 260 (399)
......+|||++..-|++-....... ...+-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 33456789999999887653322221 122346999999999865
No 442
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.27 E-value=0.82 Score=41.91 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe---CcHHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA---PTYELAIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~---Pt~~La~Q~~~~~~~~ 196 (399)
|.-+++.|++|+|||...+--+.+.+.. +.+++|++ |...+..++.+....+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 7889999999999997665544444432 44588888 3333444444444444
No 443
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.05 E-value=1.4 Score=42.32 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.||.|+|||....
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999996654
No 444
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.78 E-value=0.24 Score=43.44 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=18.9
Q ss_pred HHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 131 ETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 131 ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
+.|+.....+ ++++++.+|.|+|||+.+
T Consensus 12 KrAL~iAAaG-~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 12 KRALEIAAAG-GHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHHC-C--EEEES-CCCTHHHHH
T ss_pred HHHHHHHHcC-CCCeEEECCCCCCHHHHH
Confidence 3455555566 899999999999999765
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.67 E-value=0.53 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.1
Q ss_pred hhhhcCCCCcEEEEccCCCCceeh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~ 158 (399)
...... +.+++++++||||||..
T Consensus 138 ~~~v~~-~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 138 RLAIAS-RKNIIISGGTGSGKTTF 160 (308)
T ss_pred HHHhhC-CCEEEEECCCCCCHHHH
Confidence 333443 79999999999999964
No 446
>PRK14701 reverse gyrase; Provisional
Probab=88.52 E-value=2.1 Score=49.33 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE------GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+++|.++++.-+.+++..|... +..+..+||+++..++..+++.+++|+.+|||
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV 183 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILV 183 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3458999999999999999998773 46788999999999999999999999999885
No 447
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.52 E-value=0.32 Score=40.52 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=26.9
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
+-.|+.+|.|||||..|........ . +++++.+-++|.|+
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~----~---~~~~VN~D~iA~~i 42 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLL----P---GIVFVNADEIAAQI 42 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhc----C---CeEEECHHHHhhhc
Confidence 3457889999999998865433221 1 56777777777664
No 448
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.46 E-value=1.8 Score=39.09 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcHHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTYELAIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~ 196 (399)
..-+.++++.|||||..-- +++..+..+ ..++++. ||...+.=....+..+
T Consensus 51 qg~~~vtGevGsGKTv~~R-al~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRR-ALLASLNED---QVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred CceEEEEecCCCchhHHHH-HHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHh
Confidence 3488899999999998766 455444432 2344444 4544443333333333
No 449
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.45 E-value=3.2 Score=44.68 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++++|+++|.+..+.++..|......+ ...|.-. .|..++++|++++-.||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 45899999999999999999997665555 4444222 356789999998777763
No 450
>PF12846 AAA_10: AAA-like domain
Probab=88.42 E-value=0.51 Score=43.83 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=29.1
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 187 (399)
.|+++.|+||||||.....-+.+.+.. +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCchHHH
Confidence 789999999999997776444344433 355777767655544
No 451
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=0.28 Score=48.07 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=21.4
Q ss_pred HHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 131 ETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 131 ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
++|+....++ |+|+++.+|.|||||+.+
T Consensus 188 KrAleiAAAG-gHnLl~~GpPGtGKTmla 215 (490)
T COG0606 188 KRALEIAAAG-GHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHHhc-CCcEEEecCCCCchHHhh
Confidence 3444555566 999999999999999643
No 452
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.32 E-value=1.8 Score=44.80 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.6
Q ss_pred CcEEEEccCCCCceehhHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~ 162 (399)
+..|++||.|+|||.++.+-
T Consensus 39 ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 55899999999999877553
No 453
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.19 E-value=0.97 Score=41.46 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
-.|+++.+|+|.|||..+.+
T Consensus 52 lDHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHH
Confidence 47899999999999965543
No 454
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.99 E-value=0.44 Score=46.46 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 191 (399)
.+|+++.|.||||||. ++..++..+.. .+.+++|.=|.-+.....++
T Consensus 15 ~~~~li~G~~GsGKT~-~i~~ll~~~~~--~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQ-AIRHLLDQIRA--RGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GG-EEEEE-TTSSHHH-HHHHHHHHHHH--TT-EEEEEEETTHHHHHH--
T ss_pred hCcEEEECCCCCCHHH-HHHHHHHHHHH--cCCEEEEEECCchHHHHhcC
Confidence 5999999999999996 44566766644 24567777787766554444
No 455
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.91 E-value=0.93 Score=41.14 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSR 166 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~ 166 (399)
..-+|+.++|||||+.... +++.+
T Consensus 127 RGLviiVGaTGSGKSTtmA-aMi~y 150 (375)
T COG5008 127 RGLVIIVGATGSGKSTTMA-AMIGY 150 (375)
T ss_pred CceEEEECCCCCCchhhHH-HHhcc
Confidence 4678899999999997543 44443
No 456
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.87 E-value=0.26 Score=45.49 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=20.2
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.. +++++++||+|+|||...
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444555 899999999999999754
No 457
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.85 E-value=1.6 Score=42.27 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
.|+..++.||.|+|||.... .+...+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK-~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQ-NIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHH-HHHHHHH
Confidence 48999999999999995432 2444443
No 458
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.82 E-value=1.9 Score=40.66 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=24.2
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEe
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSA 286 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SA 286 (399)
...+++|||+||.|.. .....+.+++..-| +..++++|.
T Consensus 123 ~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEEC
Confidence 5678999999999854 23333444444444 565555544
No 459
>KOG0740|consensus
Probab=87.81 E-value=2.1 Score=41.78 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=32.4
Q ss_pred CceeEEEEechhhHhhcCCch--H-----HHHHHH----HhCCCCCcEEEEEee-CChhHHHHHHhhCCC
Q psy11867 245 SKIKVFVLDEADVMIATQGHQ--D-----FSIRIQ----KRLPSDCQIMLFSAT-YDKEVMEFAQDMVPN 302 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~--~-----~~~~i~----~~l~~~~q~l~~SAT-~~~~v~~~~~~~~~~ 302 (399)
....+++|||+|.++....-. + ....++ .....+-++++++|| .|..+.+-++..+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVK 313 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhc
Confidence 356688899999998543111 1 111111 122345689999999 444555555444333
No 460
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.77 E-value=2.1 Score=44.90 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.2
Q ss_pred CcEEEEccCCCCceehhHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~ 162 (399)
+-++++||.|+|||.++.+-
T Consensus 41 HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45689999999999877543
No 461
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.67 E-value=2.5 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCCceehhHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTM 163 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~i 163 (399)
++.+++.||.|+|||.++..-+
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3568899999999998765533
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.63 E-value=3.6 Score=37.05 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=30.3
Q ss_pred cEEEEccCCCCceehhHHHHHHhhC---------CCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVN---------PSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~---------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
-.++.||.|+|||...+--++.... ....+.+++|++- ..=..++.+.+..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHh
Confidence 3578899999999766554443221 1123456888882 1122344445555544
No 463
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.56 E-value=0.8 Score=47.56 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=38.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH--HHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE--LAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~--La~Q~~~~~~~~~~ 198 (399)
.+|+++.|+||+|||..+.+-+.+.+.. +..++++=|-.. |...++..++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 6899999999999998875555555543 334666667654 77777777777654
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.39 E-value=2.1 Score=42.70 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|.-+++.+++|+|||...+.-+..... .+.+++|++.- +-..|+...+.+++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 788999999999999765543333322 23458888754 45567776666654
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.39 E-value=0.75 Score=46.32 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=39.9
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
+|+-+++.+++|+|||.-.+--+.+.+.+ .+-.++|++- .|-..++.+.++.++-.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 37999999999999997766555554443 1234888884 46667778888877644
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.26 E-value=2 Score=39.03 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCceeh
Q psy11867 141 PPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~ 158 (399)
.|+.+++.++.|+|||..
T Consensus 15 ~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 389999999999999953
No 467
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=87.21 E-value=2 Score=36.55 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=19.2
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
...+++|+||+=.|-. ....+...+...+.++..++
T Consensus 94 ~~~~liviDEIG~mEl--~~~~F~~~v~~~l~s~~~vi 129 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMEL--KSPGFREAVEKLLDSNKPVI 129 (168)
T ss_dssp HCCHEEEE---STTCC--C-CHHHHHHHHHHCTTSEEE
T ss_pred CCCCEEEEeccchhhh--cCHHHHHHHHHHHcCCCcEE
Confidence 5678999999998843 23334444555555555544
No 468
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=87.07 E-value=0.72 Score=40.48 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
..|+++.|.||||||.+....+.+.+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 359999999999999776554444444
No 469
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.01 E-value=2.8 Score=42.19 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCceehhHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~ 162 (399)
+-.++.||.|+|||.++.+-
T Consensus 39 hayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34578999999999776553
No 470
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.92 E-value=0.45 Score=46.80 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
.+|+++.|+||||||.. +..++..+.. .+.+++|+=|..++....
T Consensus 42 ~~h~~i~g~tGsGKt~~-i~~l~~~~~~--~~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQ-IRELLASIRA--RGDRAIIYDPNGGFVSKF 86 (410)
T ss_pred hccEEEEcCCCCCHHHH-HHHHHHHHHh--cCCCEEEEeCCcchhHhh
Confidence 58999999999999975 3344444332 234577777777765443
No 471
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.91 E-value=2.4 Score=43.46 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred CcEEEEccCCCCceehhHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l 161 (399)
+-+++.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5589999999999987655
No 472
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=86.76 E-value=1.2 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|+..|+++..+.||+..
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHH
Confidence 3689999998778888999999999999999999753
No 473
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.68 E-value=0.4 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|+++++.||+|+|||..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred CCeEEEEcCCCCCHHHHHH
Confidence 7999999999999997664
No 474
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.63 E-value=5.6 Score=33.90 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=64.4
Q ss_pred EEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcE
Q psy11867 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQI 224 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 224 (399)
+.+-...|-|||.|++=-++..+-. +.+++++-=.+. ...+.+...+. .++.+.....-.+......... .+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg--~~~~GE~~~l~-~l~~~~~~~~g~~f~~~~~~~~-~~- 77 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKG--GRYSGELKALK-KLPNVEIERFGKGFVWRMNEEE-ED- 77 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS----SS--HHHHHHG-GGT--EEEE--TT----GGGHH-HH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecC--CCCcCHHHHHH-hCCeEEEEEcCCcccccCCCcH-HH-
Confidence 4555668999999988777776654 345777764443 01112222222 2223222211111111100000 00
Q ss_pred EEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCc--hHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 225 IIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGH--QDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 225 lV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
.......++... +.+.-..+++||+||+-..+.. ++ .+.+..+++..|...-+|+.--..|+.+.+.+.
T Consensus 78 -~~~~~~~~~~a~--~~i~~~~~dlvILDEi~~a~~~-gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 78 -RAAAREGLEEAK--EAISSGEYDLVILDEINYAVDY-GLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -HHHHHHHHHHHH--HHTT-TT-SEEEEETHHHHHHT-TSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred -HHHHHHHHHHHH--HHHhCCCCCEEEEcchHHHhHC-CCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 011112222211 2333567899999999888764 43 345667777777788888877777877777664
No 475
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=86.57 E-value=1.7 Score=45.65 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=55.5
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-CCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS-IQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
.+++-|.+|+... ...++|.|..|||||.+-.--+.+.+... ....+++.++=|+.-|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~----~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP----DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC----CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999765 47788889999999988776666666553 2344689999999999999999988875
No 476
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=86.50 E-value=2.6 Score=39.78 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCC---CCCCCeEEEEeCcHHH-HHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNP---SIQEPQVLCLAPTYEL-AIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~---~~~~~~~lil~Pt~~L-a~Q~~~~~~~~ 196 (399)
|.-+.+.+++|+|||...+-.++....+ ...+.+++||.--..+ ..++.+.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 6778899999999996654433322211 1234578888743321 34455544444
No 477
>KOG2228|consensus
Probab=86.48 E-value=13 Score=35.29 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.4
Q ss_pred CCCCcEEEEccCCCCceeh
Q psy11867 140 DPPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 140 ~~g~~vi~~a~TGsGKT~~ 158 (399)
+.+..+++.+|-|||||..
T Consensus 47 gEsnsviiigprgsgkT~l 65 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTIL 65 (408)
T ss_pred cCCCceEEEccCCCCceEe
Confidence 3478999999999999964
No 478
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=86.48 E-value=6.7 Score=41.45 Aligned_cols=59 Identities=15% Similarity=0.364 Sum_probs=40.1
Q ss_pred HHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhc----CCCccc
Q psy11867 334 AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFRE----GEFKIY 398 (399)
Q Consensus 334 ~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~----G~~~IL 398 (399)
.+..++. ..+.++||++|.+..+.++..|... +.. ...+|. ..|..+++.|++ |+-.||
T Consensus 526 ~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 526 FLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEE
Confidence 3444545 3456999999999999999998743 333 344554 357788877774 555565
No 479
>KOG0344|consensus
Probab=86.26 E-value=7.9 Score=38.98 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=71.9
Q ss_pred ccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhh-------hhhccC
Q psy11867 149 SQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE-------RNKKIT 221 (399)
Q Consensus 149 a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 221 (399)
.-.+.||+..-++++.+.+..+ -.|-+||.+-+.+-|.|++..+. .+.++++..++|..... +-..+.
T Consensus 364 elvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 3468899988888888877765 56779999999999999999887 23578888888874432 222455
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechh
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah 256 (399)
..++|||- ++. +.+++.++.+||.++.-
T Consensus 439 IwvLicTd--ll~-----RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICTD--LLA-----RGIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEehh--hhh-----ccccccCcceEEecCCC
Confidence 67999995 222 45899999999997753
No 480
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=86.01 E-value=1.9 Score=32.16 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=34.3
Q ss_pred ccCCCCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCCH
Q psy11867 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELTV 380 (399)
Q Consensus 340 ~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 380 (399)
......++|+||.+-..+..++..|...|+. +..|.||+..
T Consensus 52 ~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 52 GLDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 3344568999999988999999999999987 9999999754
No 481
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.96 E-value=1.8 Score=47.03 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=50.4
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++|.++|+.-|.+.++.+.+. ++++..++|..+..++..+++.+++|+.+|+|
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVI 559 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILI 559 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEE
Confidence 468999999999999999888764 67889999999999999999999999999875
No 482
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=85.96 E-value=3.6 Score=43.12 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 332 FEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 332 ~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
...+..++...+ ++++||++|.+..+.+++.+...... ....+|.. .+...++.|+.+.-
T Consensus 468 ~~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~ 528 (654)
T COG1199 468 AAYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGE 528 (654)
T ss_pred HHHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcC
Confidence 334444555444 59999999999999999999876542 34444544 44478888887543
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.79 E-value=0.78 Score=40.15 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=23.6
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
-+++++|||||||... ..++..+... .+.+++.+--..|
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~-~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKN-KTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhc-CCcEEEEEcCCcc
Confidence 4789999999999764 3345554432 2334555554434
No 484
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.42 E-value=6.1 Score=34.86 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe---CcHHHHHHHHHH----HHHHhccCCCcEEEE-EEcCch
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA---PTYELAIQIGEV----VAKMGKHITDLSVRY-AVRGEN 213 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~---Pt~~La~Q~~~~----~~~~~~~~~~~~~~~-~~~~~~ 213 (399)
|.=+++.++.|+|||+.-+--+.-.+.. +.++.+++ ++++...|+... ...+... .+.+.. ...+..
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~---g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G--~l~~~~~~~~~~~ 102 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMN---GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG--RLLFFPVNLEPVN 102 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhC---CceEEEEEechhHHHHHHHHHhcCCCchHHHhcc--eeEEEEecccccc
Confidence 6788999999999996554433333333 34466665 566666665321 1111111 111111 112222
Q ss_pred hhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHH---HHhCCCCCcEEEEEee---
Q psy11867 214 LERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRI---QKRLPSDCQIMLFSAT--- 287 (399)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i---~~~l~~~~q~l~~SAT--- 287 (399)
+.+.. -..+++.+.+ .....+-+++|+|-...+... .-...+..+ ++.+....+++++|+-
T Consensus 103 ~~~~~----------~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~-~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~ 169 (235)
T COG2874 103 WGRRS----------ARKLLDLLLE--FIKRWEKDVIIIDSLSAFATY-DSEDAVLNFMTFLRKLSDLGKVIILTVHPSA 169 (235)
T ss_pred cChHH----------HHHHHHHHHh--hHHhhcCCEEEEecccHHhhc-ccHHHHHHHHHHHHHHHhCCCEEEEEeChhh
Confidence 22211 1123443322 222556779999999887643 222223222 3445567789999986
Q ss_pred CChhHHHHHHh
Q psy11867 288 YDKEVMEFAQD 298 (399)
Q Consensus 288 ~~~~v~~~~~~ 298 (399)
+++++.-.++.
T Consensus 170 l~e~~~~rirs 180 (235)
T COG2874 170 LDEDVLTRIRS 180 (235)
T ss_pred cCHHHHHHHHH
Confidence 34444433333
No 485
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.36 E-value=3.2 Score=45.19 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=33.3
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
.--++|||++|.+-+ ....+.+..+++.++.+..+++.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~-~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITN-PEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCC-hHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 345899999999743 3455677888888998999988887754
No 486
>KOG2036|consensus
Probab=85.30 E-value=3.6 Score=42.31 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=41.8
Q ss_pred hHHHHHHhhhhhc----C-CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHH
Q psy11867 127 SKIQETALPTLLA----D-PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 127 ~~iQ~~ai~~ll~----~-~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 191 (399)
|--|..|+-.+.. . -..-+-+.|.-|-||+.|..+.+...+.-+. ..+.|-+|.-+=..-..+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy--snIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY--SNIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc--ceEEEcCCChHHHHHHHH
Confidence 5567777755432 1 1345667789999999999998887776543 336667788765444333
No 487
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.26 E-value=2.4 Score=40.95 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
.+.+++.||.|+|||....
T Consensus 39 ~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3679999999999996554
No 488
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.22 E-value=2.5 Score=42.43 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+.+||.+++++-+...+..|...|+.+..++|+.+..++..++...+.|+.+||+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~ 106 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLY 106 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 46799999999999999999999999999999999999999999999999988874
No 489
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.19 E-value=16 Score=34.55 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe-C-cHHHH-HHHHHHHHHHhccCCCcEEEEEEcCchhhhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA-P-TYELA-IQIGEVVAKMGKHITDLSVRYAVRGENLERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~-P-t~~La-~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (399)
+.-+++.+..|+|||..-.=-+-.... .+.++++.+ - -|+=| .|...+.++. ++.+.....|.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~-----gv~vI~~~~G~------ 204 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERL-----GVPVISGKEGA------ 204 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHh-----CCeEEccCCCC------
Confidence 456788999999999765432222222 333455554 2 34433 4444444443 22222211111
Q ss_pred ccCCcEEEeCchhH-HHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC------cEEEEEeeCChh
Q psy11867 219 KITEQIIIGTPGKV-LDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC------QIMLFSATYDKE 291 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l-~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~------q~l~~SAT~~~~ 291 (399)
-|..+ .+.+. .-.-+++++|++|=|-||-......+.+..|.+.+.+.. -++.+-||...+
T Consensus 205 ---------DpAaVafDAi~---~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 205 ---------DPAAVAFDAIQ---AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ---------CcHHHHHHHHH---HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 11111 11111 112346677777777777544344555556665554433 234448998877
Q ss_pred HHHHHHhh
Q psy11867 292 VMEFAQDM 299 (399)
Q Consensus 292 v~~~~~~~ 299 (399)
...-++.|
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 65555554
No 490
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=85.18 E-value=2 Score=37.01 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=34.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC-------CCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS-------IQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~-------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
|.-+++.|++|+|||...+--+...+... ....+++++..-.. ..++.+.+..+...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~ 95 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQD 95 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhcc
Confidence 67899999999999976554444444211 13456777765443 55777777776643
No 491
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=85.13 E-value=0.87 Score=40.72 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
++|+.|.|.||||||..... +++.+.. ..+..++|+=|.-|
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~-~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK-KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh-cCCCCEEEEcCCCc
Confidence 48999999999999976554 3333332 23445777767654
No 492
>PHA02542 41 41 helicase; Provisional
Probab=85.06 E-value=2.5 Score=42.35 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe---CcHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA---PTYELAI 187 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~---Pt~~La~ 187 (399)
|.-+++.|.+|.|||...+--+..... .+..+++++ |...|+.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~---~g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQ---QGYNVLYISMEMAEEVIAK 235 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEEeccCCHHHHHH
Confidence 567788999999999766654444442 234467666 4444443
No 493
>KOG0741|consensus
Probab=84.96 E-value=6.7 Score=39.32 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHcCCCCChHHHHHHhhhh-------hc---CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeE
Q psy11867 107 ALHLKPELLKGVYEMGFYAPSKIQETALPTL-------LA---DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQV 176 (399)
Q Consensus 107 ~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~l-------l~---~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~ 176 (399)
.+|.+++-++.....|...-.+.-.+.+..- .. .+-..+++.+|.|||||..+.-.++ ....|.+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~-----~S~FPFv 567 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL-----SSDFPFV 567 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh-----hcCCCeE
Confidence 4678888888888777654443333333211 00 1236899999999999954433222 2345667
Q ss_pred EEEeCc
Q psy11867 177 LCLAPT 182 (399)
Q Consensus 177 lil~Pt 182 (399)
=|++|.
T Consensus 568 KiiSpe 573 (744)
T KOG0741|consen 568 KIISPE 573 (744)
T ss_pred EEeChH
Confidence 777774
No 494
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=84.91 E-value=1.6 Score=45.17 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH--HHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY--ELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~--~La~Q~~~~~~~~~~ 198 (399)
..|.++.|+||+|||..+.+-+.+.+.. +..++++=|-. ++...++..++..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~---g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR---GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999887766666643 34577777765 577777777777765
No 495
>KOG0331|consensus
Probab=84.81 E-value=4.4 Score=40.67 Aligned_cols=70 Identities=10% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh-------ccCCcEEEeCchhHHHhhhcccccc
Q psy11867 171 IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK-------KITEQIIIGTPGKVLDWGLKYRFFD 243 (399)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~Tp~~l~~~~~~~~~~~ 243 (399)
....++||.|-|+.-|.++.+.++..+ .+...++|........ .+.+.|+|||- .-.+.++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~-----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-------VAaRGLD 406 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG-----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-------VAARGLD 406 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC-----cceeeecccccHHHHHHHHHhcccCCcceEEEcc-------cccccCC
Confidence 356789999999999999988887753 4556666765543322 45678999996 2336788
Q ss_pred CCceeEEEE
Q psy11867 244 LSKIKVFVL 252 (399)
Q Consensus 244 ~~~~~~lVi 252 (399)
+.++++||-
T Consensus 407 i~dV~lVIn 415 (519)
T KOG0331|consen 407 VPDVDLVIN 415 (519)
T ss_pred CccccEEEe
Confidence 899999985
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.43 E-value=0.49 Score=32.84 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|...++.+++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999643
No 497
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.86 E-value=1.4 Score=47.62 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.3
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999996653
No 498
>KOG1131|consensus
Probab=83.70 E-value=4.2 Score=40.47 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=40.1
Q ss_pred CCCChHHHHHHhhhh---hcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC-CCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 123 FYAPSKIQETALPTL---LADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI-QEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~l---l~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
|..-+|-|-+=.-.+ +.. +.+.++..|+|+|||.+.+--++..-..-+ ...+.++-+-|..=......+++.+
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDa-kGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDA-KGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CcccCHHHHHHHHHHHHhhcc-CCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 444556665444333 322 789999999999999876544443322222 2334555555544334444444443
No 499
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.69 E-value=1.5 Score=46.53 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.||||+|||..+-
T Consensus 486 ~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAK 502 (731)
T ss_pred eEEEECCCCccHHHHHH
Confidence 57999999999995543
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.68 E-value=4.8 Score=41.00 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCceeh
Q psy11867 141 PPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~ 158 (399)
+|+-+.+.||+|||||..
T Consensus 360 ~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTL 377 (529)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 489999999999999964
Done!